Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75080.t1 | XP_003620926.1 | 95.1 | 244 | 6 | 2 | 1 | 244 | 52 | 289 | 1.10E-118 | 436 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75080.t1 | Q9LVS0 | 70.7 | 92 | 24 | 1 | 23 | 111 | 70 | 161 | 9.9e-31 | 135.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75080.t1 | G7KJT9 | 95.1 | 244 | 6 | 2 | 1 | 244 | 52 | 289 | 8.1e-119 | 436.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene75080.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049230 | MS.gene75080 | 0.8078 | 4.23E-50 | -1.69E-46 |
MS.gene049378 | MS.gene75080 | 0.836768 | 7.71E-57 | -1.69E-46 |
MS.gene050787 | MS.gene75080 | 0.817171 | 3.79E-52 | -1.69E-46 |
MS.gene052389 | MS.gene75080 | 0.820161 | 7.94E-53 | -1.69E-46 |
MS.gene054468 | MS.gene75080 | 0.811989 | 5.31E-51 | -1.69E-46 |
MS.gene054930 | MS.gene75080 | 0.81461 | 1.41E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75080.t1 | MTR_6g092540 | 95.082 | 244 | 6 | 2 | 1 | 244 | 52 | 289 | 9.13e-168 | 464 |
MS.gene75080.t1 | MTR_8g101650 | 50.000 | 226 | 76 | 8 | 26 | 244 | 85 | 280 | 1.63e-57 | 184 |
MS.gene75080.t1 | MTR_2g100930 | 70.000 | 90 | 20 | 1 | 29 | 111 | 85 | 174 | 6.21e-39 | 138 |
MS.gene75080.t1 | MTR_4g100630 | 65.217 | 92 | 28 | 1 | 24 | 111 | 69 | 160 | 3.78e-37 | 133 |
MS.gene75080.t1 | MTR_4g111975 | 73.239 | 71 | 19 | 0 | 40 | 110 | 132 | 202 | 2.90e-34 | 125 |
MS.gene75080.t1 | MTR_7g067080 | 78.873 | 71 | 15 | 0 | 40 | 110 | 134 | 204 | 9.63e-34 | 124 |
MS.gene75080.t1 | MTR_5g037080 | 65.909 | 88 | 27 | 1 | 26 | 110 | 79 | 166 | 1.77e-32 | 120 |
MS.gene75080.t1 | MTR_3g462790 | 74.648 | 71 | 18 | 0 | 40 | 110 | 141 | 211 | 7.52e-32 | 119 |
MS.gene75080.t1 | MTR_5g069710 | 74.648 | 71 | 18 | 0 | 40 | 110 | 126 | 196 | 1.03e-31 | 118 |
MS.gene75080.t1 | MTR_1g111830 | 71.429 | 70 | 20 | 0 | 41 | 110 | 119 | 188 | 1.36e-30 | 114 |
MS.gene75080.t1 | MTR_4g107230 | 63.366 | 101 | 30 | 2 | 38 | 136 | 76 | 171 | 2.04e-29 | 112 |
MS.gene75080.t1 | MTR_5g081860 | 69.863 | 73 | 20 | 1 | 40 | 110 | 119 | 191 | 2.29e-29 | 111 |
MS.gene75080.t1 | MTR_0036s0260 | 63.158 | 76 | 28 | 0 | 35 | 110 | 17 | 92 | 2.24e-28 | 107 |
MS.gene75080.t1 | MTR_3g104370 | 60.714 | 84 | 29 | 2 | 43 | 123 | 88 | 170 | 2.86e-27 | 105 |
MS.gene75080.t1 | MTR_2g090305 | 61.842 | 76 | 29 | 0 | 35 | 110 | 17 | 92 | 8.53e-27 | 102 |
MS.gene75080.t1 | MTR_8g063600 | 68.493 | 73 | 21 | 1 | 40 | 110 | 100 | 172 | 1.17e-25 | 102 |
MS.gene75080.t1 | MTR_1g033620 | 56.790 | 81 | 28 | 2 | 61 | 134 | 20 | 100 | 2.25e-20 | 87.0 |
MS.gene75080.t1 | MTR_4g015130 | 67.857 | 56 | 18 | 0 | 55 | 110 | 2 | 57 | 5.54e-20 | 81.6 |
MS.gene75080.t1 | MTR_1g048660 | 48.315 | 89 | 36 | 3 | 47 | 134 | 13 | 92 | 7.81e-20 | 81.6 |
MS.gene75080.t1 | MTR_5g027570 | 52.857 | 70 | 31 | 1 | 42 | 109 | 88 | 157 | 2.17e-19 | 84.3 |
MS.gene75080.t1 | MTR_8g063870 | 61.538 | 65 | 23 | 1 | 48 | 110 | 94 | 158 | 1.03e-18 | 83.2 |
MS.gene75080.t1 | MTR_5g088010 | 50.704 | 71 | 32 | 1 | 42 | 109 | 56 | 126 | 2.38e-18 | 81.6 |
MS.gene75080.t1 | MTR_5g088060 | 55.385 | 65 | 26 | 1 | 48 | 109 | 274 | 338 | 2.85e-17 | 80.9 |
MS.gene75080.t1 | MTR_5g488160 | 55.385 | 65 | 26 | 1 | 48 | 109 | 274 | 338 | 2.85e-17 | 80.9 |
MS.gene75080.t1 | MTR_5g027550 | 58.929 | 56 | 23 | 0 | 42 | 97 | 73 | 128 | 6.15e-17 | 77.4 |
MS.gene75080.t1 | MTR_1g083180 | 50.633 | 79 | 33 | 3 | 48 | 123 | 63 | 138 | 2.97e-15 | 72.0 |
MS.gene75080.t1 | MTR_5g075760 | 56.250 | 64 | 24 | 3 | 48 | 108 | 107 | 169 | 1.33e-12 | 65.5 |
MS.gene75080.t1 | MTR_5g075790 | 54.688 | 64 | 25 | 3 | 48 | 108 | 115 | 177 | 4.24e-12 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75080.t1 | AT5G56840 | 64.486 | 107 | 33 | 2 | 29 | 134 | 74 | 176 | 8.36e-43 | 145 |
MS.gene75080.t1 | AT5G47390 | 70.652 | 92 | 24 | 1 | 23 | 111 | 70 | 161 | 5.34e-40 | 141 |
MS.gene75080.t1 | AT5G61620 | 64.211 | 95 | 26 | 2 | 21 | 110 | 81 | 172 | 1.33e-35 | 129 |
MS.gene75080.t1 | AT3G16350 | 43.049 | 223 | 89 | 8 | 10 | 206 | 85 | 295 | 7.69e-35 | 128 |
MS.gene75080.t1 | AT1G49010 | 73.239 | 71 | 19 | 0 | 40 | 110 | 128 | 198 | 5.95e-34 | 124 |
MS.gene75080.t1 | AT5G08520 | 67.949 | 78 | 25 | 0 | 40 | 117 | 112 | 189 | 2.26e-33 | 122 |
MS.gene75080.t1 | AT2G38090 | 71.250 | 80 | 21 | 1 | 34 | 111 | 127 | 206 | 4.38e-33 | 122 |
MS.gene75080.t1 | AT1G70000 | 67.442 | 86 | 25 | 1 | 29 | 111 | 78 | 163 | 6.11e-32 | 118 |
MS.gene75080.t1 | AT1G70000 | 67.442 | 86 | 25 | 1 | 29 | 111 | 78 | 163 | 6.11e-32 | 118 |
MS.gene75080.t1 | AT5G58900 | 74.286 | 70 | 18 | 0 | 41 | 110 | 136 | 205 | 2.51e-31 | 117 |
MS.gene75080.t1 | AT5G01200 | 70.423 | 71 | 21 | 0 | 40 | 110 | 140 | 210 | 4.39e-30 | 113 |
MS.gene75080.t1 | AT3G11280 | 60.976 | 82 | 32 | 0 | 40 | 121 | 121 | 202 | 5.62e-29 | 110 |
MS.gene75080.t1 | AT3G11280 | 60.976 | 82 | 32 | 0 | 40 | 121 | 121 | 202 | 5.62e-29 | 110 |
MS.gene75080.t1 | AT5G04760 | 65.714 | 70 | 24 | 0 | 41 | 110 | 94 | 163 | 1.32e-28 | 108 |
MS.gene75080.t1 | AT5G05790 | 67.606 | 71 | 23 | 0 | 40 | 110 | 125 | 195 | 4.11e-28 | 108 |
MS.gene75080.t1 | AT5G05790 | 67.606 | 71 | 23 | 0 | 40 | 110 | 125 | 195 | 4.11e-28 | 108 |
MS.gene75080.t1 | AT1G19000 | 41.791 | 201 | 87 | 8 | 42 | 240 | 98 | 270 | 4.23e-27 | 105 |
MS.gene75080.t1 | AT1G19000 | 41.791 | 201 | 87 | 8 | 42 | 240 | 98 | 270 | 4.23e-27 | 105 |
MS.gene75080.t1 | AT1G74840 | 74.286 | 70 | 18 | 0 | 41 | 110 | 91 | 160 | 2.23e-26 | 102 |
MS.gene75080.t1 | AT1G74840 | 74.286 | 70 | 18 | 0 | 41 | 110 | 91 | 160 | 3.27e-26 | 103 |
MS.gene75080.t1 | AT3G10580 | 57.831 | 83 | 33 | 1 | 42 | 124 | 91 | 171 | 2.85e-24 | 97.8 |
MS.gene75080.t1 | AT3G10580 | 57.831 | 83 | 33 | 1 | 42 | 124 | 91 | 171 | 4.76e-24 | 97.8 |
MS.gene75080.t1 | AT5G23650 | 60.563 | 71 | 28 | 0 | 40 | 110 | 114 | 184 | 6.05e-24 | 98.6 |
MS.gene75080.t1 | AT4G09450 | 57.971 | 69 | 29 | 0 | 42 | 110 | 87 | 155 | 2.35e-20 | 85.9 |
MS.gene75080.t1 | AT3G10590 | 51.316 | 76 | 34 | 2 | 38 | 111 | 101 | 175 | 4.13e-16 | 74.7 |
Find 43 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTAATTAAGTCACACTAAT+TGG | 0.200852 | 6.3:-83968561 | None:intergenic |
GCTGCTACATTTGAAGAATT+TGG | 0.204915 | 6.3:-83968453 | None:intergenic |
TCCCCAAGTTCATTTCTTAT+TGG | 0.248835 | 6.3:+83968537 | MS.gene75080:CDS |
CCCCAAGTTCATTTCTTATT+GGG | 0.272509 | 6.3:+83968538 | MS.gene75080:CDS |
TTGTTCCATGTTATTTGAAT+TGG | 0.302002 | 6.3:-83968505 | None:intergenic |
CATATCATAATCATCTGATT+TGG | 0.325159 | 6.3:-83968319 | None:intergenic |
ATATTTAAAGACTTTGTTAG+AGG | 0.361817 | 6.3:-83968417 | None:intergenic |
AGAAGCTTGGAAAGGGAGAT+TGG | 0.367189 | 6.3:+83967203 | MS.gene75080:CDS |
CTATGCTCTTCTTCTGTCCA+TGG | 0.368105 | 6.3:-83967160 | None:intergenic |
ACGTCTCTTCTTCTTGTTCA+AGG | 0.393113 | 6.3:-83967311 | None:intergenic |
GAGCATAGAAAATTCCTTGT+TGG | 0.413219 | 6.3:+83967175 | MS.gene75080:CDS |
CTTGTTGGACTTGAGAAGCT+TGG | 0.417301 | 6.3:+83967190 | MS.gene75080:CDS |
GTTAGAGGATGTAGCCAATC+TGG | 0.418818 | 6.3:-83968402 | None:intergenic |
GCTTGGAAAGGGAGATTGGA+GGG | 0.428206 | 6.3:+83967207 | MS.gene75080:CDS |
ATTGATGATAGAGCCTCTAT+TGG | 0.438397 | 6.3:+83966804 | MS.gene75080:CDS |
AACATAAAGATGTGCCAGAT+TGG | 0.441110 | 6.3:+83968388 | MS.gene75080:CDS |
GAAGAAGAAAAGGAAGAAGT+AGG | 0.461242 | 6.3:-83966771 | None:intergenic |
TCTATTGGTTATCTTTCAGA+TGG | 0.468296 | 6.3:+83966819 | MS.gene75080:CDS |
GGATAATCTTGAAGAAGAAA+AGG | 0.479396 | 6.3:-83966781 | None:intergenic |
GATCTTGAGCTAACTCTGGC+AGG | 0.479985 | 6.3:+83968480 | MS.gene75080:CDS |
AATAGAGGCTCTATCATCAA+TGG | 0.491413 | 6.3:-83966802 | None:intergenic |
TTTATTAAATAGGAGTTCCA+TGG | 0.498046 | 6.3:+83967143 | MS.gene75080:intron |
GGACTTGAGAAGCTTGGAAA+GGG | 0.498462 | 6.3:+83967196 | MS.gene75080:CDS |
ATCTGAAAGATAACCAATAG+AGG | 0.500436 | 6.3:-83966817 | None:intergenic |
AGCTTGGAAAGGGAGATTGG+AGG | 0.502184 | 6.3:+83967206 | MS.gene75080:CDS |
GGCCCAATAAGAAATGAACT+TGG | 0.508375 | 6.3:-83968540 | None:intergenic |
GCCAGAGTTAGCTCAAGATC+AGG | 0.513405 | 6.3:-83968477 | None:intergenic |
TCATAGTTCGTACACAAGAA+AGG | 0.523916 | 6.3:+83966844 | MS.gene75080:CDS |
GCCCAATAAGAAATGAACTT+GGG | 0.527445 | 6.3:-83968539 | None:intergenic |
GCATGGCTTGCAACTTGTGT+TGG | 0.527834 | 6.3:-83967262 | None:intergenic |
AAAGTCTTTAAATATGACAT+TGG | 0.528696 | 6.3:+83968425 | MS.gene75080:CDS |
GTAGGAGAAGAAGATGAAGT+AGG | 0.532464 | 6.3:-83966753 | None:intergenic |
GAATATGTTTAGGTTGGTAG+TGG | 0.550713 | 6.3:+83968162 | MS.gene75080:intron |
ACCTGATCTTGAGCTAACTC+TGG | 0.566325 | 6.3:+83968476 | MS.gene75080:CDS |
ATCTTGAGCTAACTCTGGCA+GGG | 0.569532 | 6.3:+83968481 | MS.gene75080:CDS |
TGGACTTGAGAAGCTTGGAA+AGG | 0.582509 | 6.3:+83967195 | MS.gene75080:CDS |
CCCAATAAGAAATGAACTTG+GGG | 0.590590 | 6.3:-83968538 | None:intergenic |
CTTGGAAAGGGAGATTGGAG+GGG | 0.594996 | 6.3:+83967208 | MS.gene75080:CDS |
CAAGCTTCTCAAGTCCAACA+AGG | 0.608243 | 6.3:-83967189 | None:intergenic |
TGATGATCATGAAGTTGAGA+AGG | 0.617743 | 6.3:+83968254 | MS.gene75080:CDS |
GATCATGAAGTTGAGAAGGA+TGG | 0.622469 | 6.3:+83968258 | MS.gene75080:CDS |
ACGTTCAAGTCTCTTTGACA+TGG | 0.636224 | 6.3:+83967330 | MS.gene75080:CDS |
AGGGTCCAATTCAAATAACA+TGG | 0.651228 | 6.3:+83968500 | MS.gene75080:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTATAAAAAGAAGATTCTT+TGG | - | chr6.3:83967718-83967737 | None:intergenic | 15.0% |
!! | TAACCTATCAAAAAATTATT+AGG | + | chr6.3:83967777-83967796 | MS.gene75080:intron | 15.0% |
!!! | ATGATGTTATTTTAGAATTT+GGG | - | chr6.3:83967758-83967777 | None:intergenic | 15.0% |
!!! | CTTTTTATAATTGTTGAATT+AGG | + | chr6.3:83967727-83967746 | MS.gene75080:intron | 15.0% |
!!! | TATGATGTTATTTTAGAATT+TGG | - | chr6.3:83967759-83967778 | None:intergenic | 15.0% |
!! | AAAGTCTTTAAATATGACAT+TGG | + | chr6.3:83968425-83968444 | MS.gene75080:CDS | 20.0% |
!! | AAATAAAAAACGTCAAATGT+CGG | + | chr6.3:83967983-83968002 | MS.gene75080:intron | 20.0% |
!! | ATATTTAAAGACTTTGTTAG+AGG | - | chr6.3:83968420-83968439 | None:intergenic | 20.0% |
!! | CTATGATGTATTTATTATGA+AGG | + | chr6.3:83966995-83967014 | MS.gene75080:intron | 20.0% |
!! | TAAAATGCAAATATCCAAAT+TGG | - | chr6.3:83968112-83968131 | None:intergenic | 20.0% |
!! | TATGCATTTCATTGAATTTA+AGG | - | chr6.3:83967449-83967468 | None:intergenic | 20.0% |
!! | TGATATTGTTGAATATGTTT+AGG | + | chr6.3:83968152-83968171 | MS.gene75080:intron | 20.0% |
!! | TTTGAATTTACTCATTTAGA+CGG | - | chr6.3:83967667-83967686 | None:intergenic | 20.0% |
!!! | TCATCTATTTTAAAGTATCT+AGG | + | chr6.3:83966963-83966982 | MS.gene75080:intron | 20.0% |
!!! | TGACCTAATAATTTTTTGAT+AGG | - | chr6.3:83967783-83967802 | None:intergenic | 20.0% |
! | ATAAAAGAGTTCATCATATG+TGG | + | chr6.3:83967521-83967540 | MS.gene75080:intron | 25.0% |
! | ATGTTCAATCTTAGACATAA+AGG | + | chr6.3:83967888-83967907 | MS.gene75080:intron | 25.0% |
! | ATTGTTGAATATGTTTAGGT+TGG | + | chr6.3:83968156-83968175 | MS.gene75080:intron | 25.0% |
! | CATATCATAATCATCTGATT+TGG | - | chr6.3:83968322-83968341 | None:intergenic | 25.0% |
! | TAAAAGAGTTCATCATATGT+GGG | + | chr6.3:83967522-83967541 | MS.gene75080:intron | 25.0% |
! | TTTATTAAATAGGAGTTCCA+TGG | + | chr6.3:83967143-83967162 | MS.gene75080:intron | 25.0% |
!! | GAATAAAATACTTTTGAGCA+TGG | - | chr6.3:83967282-83967301 | None:intergenic | 25.0% |
!! | TTGTTCCATGTTATTTGAAT+TGG | - | chr6.3:83968508-83968527 | None:intergenic | 25.0% |
ATCTGAAAGATAACCAATAG+AGG | - | chr6.3:83966820-83966839 | None:intergenic | 30.0% | |
GGATAATCTTGAAGAAGAAA+AGG | - | chr6.3:83966784-83966803 | None:intergenic | 30.0% | |
TTCTTCTCAAAAGACCAATT+TGG | + | chr6.3:83968095-83968114 | MS.gene75080:intron | 30.0% | |
! | TCATTGAATTTAAGGTCATG+AGG | - | chr6.3:83967441-83967460 | None:intergenic | 30.0% |
! | TCTATTGGTTATCTTTCAGA+TGG | + | chr6.3:83966819-83966838 | MS.gene75080:CDS | 30.0% |
!! | GTGCTTTTTAAGAAATCAGA+GGG | - | chr6.3:83967580-83967599 | None:intergenic | 30.0% |
!! | TGAGTGGTTTTTAAGAATCA+TGG | + | chr6.3:83967689-83967708 | MS.gene75080:intron | 30.0% |
!! | TGTGCTTTTTAAGAAATCAG+AGG | - | chr6.3:83967581-83967600 | None:intergenic | 30.0% |
!!! | TTGCTTTTTGAGCTGTTATT+TGG | - | chr6.3:83968210-83968229 | None:intergenic | 30.0% |
AACATAAAGATGTGCCAGAT+TGG | + | chr6.3:83968388-83968407 | MS.gene75080:CDS | 35.0% | |
AATAGAGGCTCTATCATCAA+TGG | - | chr6.3:83966805-83966824 | None:intergenic | 35.0% | |
ACGCGTTTGGATGTATAATT+CGG | + | chr6.3:83967625-83967644 | MS.gene75080:intron | 35.0% | |
AGGGTCCAATTCAAATAACA+TGG | + | chr6.3:83968500-83968519 | MS.gene75080:CDS | 35.0% | |
CCCAATAAGAAATGAACTTG+GGG | - | chr6.3:83968541-83968560 | None:intergenic | 35.0% | |
CCCCAAGTTCATTTCTTATT+GGG | + | chr6.3:83968538-83968557 | MS.gene75080:CDS | 35.0% | |
CGTACACAAGAAAGGAAAAA+AGG | + | chr6.3:83966852-83966871 | MS.gene75080:CDS | 35.0% | |
GAAGAAGAAAAGGAAGAAGT+AGG | - | chr6.3:83966774-83966793 | None:intergenic | 35.0% | |
GAGCATAGAAAATTCCTTGT+TGG | + | chr6.3:83967175-83967194 | MS.gene75080:CDS | 35.0% | |
GCCCAATAAGAAATGAACTT+GGG | - | chr6.3:83968542-83968561 | None:intergenic | 35.0% | |
GCTGCTACATTTGAAGAATT+TGG | - | chr6.3:83968456-83968475 | None:intergenic | 35.0% | |
TAGTTAAAGTAGTCCCGATA+AGG | - | chr6.3:83968019-83968038 | None:intergenic | 35.0% | |
TCATAGTTCGTACACAAGAA+AGG | + | chr6.3:83966844-83966863 | MS.gene75080:CDS | 35.0% | |
TCCCCAAGTTCATTTCTTAT+TGG | + | chr6.3:83968537-83968556 | MS.gene75080:CDS | 35.0% | |
TCGGTGAAATTAGTCCTTAT+CGG | + | chr6.3:83968002-83968021 | MS.gene75080:intron | 35.0% | |
TGAGTAAATTCAAACGTGAG+TGG | + | chr6.3:83967673-83967692 | MS.gene75080:intron | 35.0% | |
TGATGATCATGAAGTTGAGA+AGG | + | chr6.3:83968254-83968273 | MS.gene75080:CDS | 35.0% | |
! | ATTGATGATAGAGCCTCTAT+TGG | + | chr6.3:83966804-83966823 | MS.gene75080:CDS | 35.0% |
! | TTTTATCAAGACATCGATGC+AGG | + | chr6.3:83966920-83966939 | MS.gene75080:intron | 35.0% |
!! | GAATATGTTTAGGTTGGTAG+TGG | + | chr6.3:83968162-83968181 | MS.gene75080:intron | 35.0% |
!! | GTGGTTTTTAAGAATCATGG+TGG | + | chr6.3:83967692-83967711 | MS.gene75080:intron | 35.0% |
AACAGCTCAAAAAGCAAGTC+AGG | + | chr6.3:83968213-83968232 | MS.gene75080:CDS | 40.0% | |
ACGTCTCTTCTTCTTGTTCA+AGG | - | chr6.3:83967314-83967333 | None:intergenic | 40.0% | |
ACGTTCAAGTCTCTTTGACA+TGG | + | chr6.3:83967330-83967349 | MS.gene75080:CDS | 40.0% | |
CGGTGAAATTAGTCCTTATC+GGG | + | chr6.3:83968003-83968022 | MS.gene75080:intron | 40.0% | |
GATCATGAAGTTGAGAAGGA+TGG | + | chr6.3:83968258-83968277 | MS.gene75080:CDS | 40.0% | |
GGCCCAATAAGAAATGAACT+TGG | - | chr6.3:83968543-83968562 | None:intergenic | 40.0% | |
GTAGGAGAAGAAGATGAAGT+AGG | - | chr6.3:83966756-83966775 | None:intergenic | 40.0% | |
! | AAAAGCACACCACTTCGAAT+TGG | + | chr6.3:83967592-83967611 | MS.gene75080:intron | 40.0% |
ACCTGATCTTGAGCTAACTC+TGG | + | chr6.3:83968476-83968495 | MS.gene75080:CDS | 45.0% | |
AGAAGCTTGGAAAGGGAGAT+TGG | + | chr6.3:83967203-83967222 | MS.gene75080:CDS | 45.0% | |
ATCTTGAGCTAACTCTGGCA+GGG | + | chr6.3:83968481-83968500 | MS.gene75080:CDS | 45.0% | |
CAAGCTTCTCAAGTCCAACA+AGG | - | chr6.3:83967192-83967211 | None:intergenic | 45.0% | |
CACACCACTTCGAATTGGAA+AGG | + | chr6.3:83967597-83967616 | MS.gene75080:intron | 45.0% | |
CTATGCTCTTCTTCTGTCCA+TGG | - | chr6.3:83967163-83967182 | None:intergenic | 45.0% | |
CTTGTTGGACTTGAGAAGCT+TGG | + | chr6.3:83967190-83967209 | MS.gene75080:CDS | 45.0% | |
GGACTTGAGAAGCTTGGAAA+GGG | + | chr6.3:83967196-83967215 | MS.gene75080:CDS | 45.0% | |
GTTAGAGGATGTAGCCAATC+TGG | - | chr6.3:83968405-83968424 | None:intergenic | 45.0% | |
TGGACTTGAGAAGCTTGGAA+AGG | + | chr6.3:83967195-83967214 | MS.gene75080:CDS | 45.0% | |
!!! | ATTTTGTTATTTTATTAAAT+AGG | + | chr6.3:83967133-83967152 | MS.gene75080:intron | 5.0% |
!!! | TTTTATATATAAATTAAGAA+AGG | - | chr6.3:83967396-83967415 | None:intergenic | 5.0% |
ACATCGATGCAGGATACGCA+GGG | + | chr6.3:83966930-83966949 | MS.gene75080:intron | 50.0% | |
AGCTTGGAAAGGGAGATTGG+AGG | + | chr6.3:83967206-83967225 | MS.gene75080:CDS | 50.0% | |
ATGCAGGATACGCAGGGATA+CGG | + | chr6.3:83966936-83966955 | MS.gene75080:intron | 50.0% | |
CGTGCCTTTCCAATTCGAAG+TGG | - | chr6.3:83967604-83967623 | None:intergenic | 50.0% | |
CTTGGAAAGGGAGATTGGAG+GGG | + | chr6.3:83967208-83967227 | MS.gene75080:CDS | 50.0% | |
GATCTTGAGCTAACTCTGGC+AGG | + | chr6.3:83968480-83968499 | MS.gene75080:CDS | 50.0% | |
GCCAGAGTTAGCTCAAGATC+AGG | - | chr6.3:83968480-83968499 | None:intergenic | 50.0% | |
GCTTGGAAAGGGAGATTGGA+GGG | + | chr6.3:83967207-83967226 | MS.gene75080:CDS | 50.0% | |
! | GCATGGCTTGCAACTTGTGT+TGG | - | chr6.3:83967265-83967284 | None:intergenic | 50.0% |
GACATCGATGCAGGATACGC+AGG | + | chr6.3:83966929-83966948 | MS.gene75080:intron | 55.0% | |
! | TGGAAAGGCACGAACGCGTT+TGG | + | chr6.3:83967612-83967631 | MS.gene75080:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 83966741 | 83968578 | 83966741 | ID=MS.gene75080 |
chr6.3 | mRNA | 83966741 | 83968578 | 83966741 | ID=MS.gene75080.t1;Parent=MS.gene75080 |
chr6.3 | exon | 83966741 | 83966873 | 83966741 | ID=MS.gene75080.t1.exon1;Parent=MS.gene75080.t1 |
chr6.3 | CDS | 83966741 | 83966873 | 83966741 | ID=cds.MS.gene75080.t1;Parent=MS.gene75080.t1 |
chr6.3 | exon | 83967155 | 83967351 | 83967155 | ID=MS.gene75080.t1.exon2;Parent=MS.gene75080.t1 |
chr6.3 | CDS | 83967155 | 83967351 | 83967155 | ID=cds.MS.gene75080.t1;Parent=MS.gene75080.t1 |
chr6.3 | exon | 83968174 | 83968578 | 83968174 | ID=MS.gene75080.t1.exon3;Parent=MS.gene75080.t1 |
chr6.3 | CDS | 83968174 | 83968578 | 83968174 | ID=cds.MS.gene75080.t1;Parent=MS.gene75080.t1 |
Gene Sequence |
Protein sequence |