Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75193.t1 | XP_013470128.1 | 94.5 | 344 | 19 | 0 | 1 | 344 | 1 | 344 | 1.50E-185 | 658.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75193.t1 | Q9C9F4 | 32.2 | 342 | 174 | 8 | 1 | 339 | 10 | 296 | 7.6e-37 | 156.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75193.t1 | G8A287 | 94.5 | 344 | 19 | 0 | 1 | 344 | 1 | 344 | 1.1e-185 | 658.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050076 | MS.gene75193 | 0.817497 | 3.20E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene75193 | 0.809788 | 1.59E-50 | -1.69E-46 |
| MS.gene052290 | MS.gene75193 | 0.820045 | 8.44E-53 | -1.69E-46 |
| MS.gene052326 | MS.gene75193 | 0.810835 | 9.46E-51 | -1.69E-46 |
| MS.gene055254 | MS.gene75193 | 0.818566 | 1.83E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene75193 | 0.80105 | 1.08E-48 | -1.69E-46 |
| MS.gene055896 | MS.gene75193 | 0.824121 | 9.58E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene75193 | 0.808597 | 2.86E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75193.t1 | MTR_1g109350 | 94.477 | 344 | 19 | 0 | 1 | 344 | 1 | 344 | 0.0 | 673 |
| MS.gene75193.t1 | MTR_5g069480 | 47.541 | 122 | 60 | 2 | 1 | 119 | 1 | 121 | 2.27e-31 | 120 |
| MS.gene75193.t1 | MTR_5g069480 | 47.541 | 122 | 60 | 2 | 1 | 119 | 1 | 121 | 3.83e-31 | 122 |
| MS.gene75193.t1 | MTR_3g082630 | 44.860 | 107 | 57 | 1 | 1 | 105 | 1 | 107 | 5.07e-25 | 105 |
| MS.gene75193.t1 | MTR_2g088900 | 46.154 | 104 | 55 | 1 | 1 | 103 | 97 | 200 | 4.05e-23 | 100 |
| MS.gene75193.t1 | MTR_7g108150 | 38.679 | 106 | 63 | 1 | 3 | 106 | 18 | 123 | 2.14e-20 | 91.3 |
| MS.gene75193.t1 | MTR_7g083540 | 33.333 | 117 | 69 | 1 | 1 | 108 | 1 | 117 | 3.08e-17 | 82.4 |
| MS.gene75193.t1 | MTR_1g013450 | 34.146 | 82 | 54 | 0 | 3 | 84 | 4 | 85 | 4.16e-13 | 69.7 |
| MS.gene75193.t1 | MTR_3g105710 | 34.783 | 92 | 57 | 1 | 3 | 91 | 4 | 95 | 5.17e-12 | 65.9 |
| MS.gene75193.t1 | MTR_7g018170 | 37.838 | 74 | 46 | 0 | 3 | 76 | 24 | 97 | 2.91e-11 | 64.7 |
| MS.gene75193.t1 | MTR_4g128930 | 34.146 | 82 | 54 | 0 | 3 | 84 | 20 | 101 | 5.42e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75193.t1 | AT1G68190 | 38.535 | 314 | 135 | 8 | 1 | 311 | 10 | 268 | 4.22e-65 | 210 |
| MS.gene75193.t1 | AT1G68190 | 38.535 | 314 | 135 | 8 | 1 | 311 | 10 | 268 | 4.22e-65 | 210 |
| MS.gene75193.t1 | AT1G68190 | 38.535 | 314 | 135 | 8 | 1 | 311 | 39 | 297 | 1.23e-64 | 209 |
| MS.gene75193.t1 | AT5G48250 | 45.455 | 110 | 55 | 1 | 1 | 105 | 1 | 110 | 1.34e-27 | 111 |
| MS.gene75193.t1 | AT3G07650 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.32e-25 | 103 |
| MS.gene75193.t1 | AT3G07650 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.32e-25 | 103 |
| MS.gene75193.t1 | AT3G07650 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.32e-25 | 103 |
| MS.gene75193.t1 | AT3G07650 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.32e-25 | 103 |
| MS.gene75193.t1 | AT2G33500 | 39.252 | 107 | 62 | 1 | 5 | 108 | 12 | 118 | 1.50e-22 | 97.8 |
| MS.gene75193.t1 | AT2G33500 | 39.252 | 107 | 62 | 1 | 5 | 108 | 12 | 118 | 1.53e-22 | 97.8 |
| MS.gene75193.t1 | AT1G28050 | 38.889 | 108 | 63 | 1 | 5 | 109 | 9 | 116 | 6.32e-22 | 96.3 |
| MS.gene75193.t1 | AT3G21880 | 42.308 | 104 | 59 | 1 | 1 | 103 | 1 | 104 | 2.15e-21 | 94.4 |
| MS.gene75193.t1 | AT3G21880 | 42.308 | 104 | 59 | 1 | 1 | 103 | 5 | 108 | 2.16e-21 | 94.4 |
| MS.gene75193.t1 | AT3G21880 | 42.308 | 104 | 59 | 1 | 1 | 103 | 5 | 108 | 2.16e-21 | 94.4 |
| MS.gene75193.t1 | AT2G47890 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 1.96e-20 | 90.5 |
| MS.gene75193.t1 | AT2G47890 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 2.67e-20 | 90.5 |
| MS.gene75193.t1 | AT2G47890 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 3.47e-20 | 88.6 |
| MS.gene75193.t1 | AT4G15250 | 37.500 | 104 | 64 | 1 | 1 | 103 | 1 | 104 | 1.32e-19 | 88.6 |
| MS.gene75193.t1 | AT5G24930 | 40.244 | 82 | 49 | 0 | 3 | 84 | 4 | 85 | 1.68e-14 | 74.3 |
| MS.gene75193.t1 | AT3G02380 | 39.024 | 82 | 50 | 0 | 3 | 84 | 14 | 95 | 2.16e-13 | 70.9 |
| MS.gene75193.t1 | AT5G15840 | 37.000 | 100 | 62 | 1 | 3 | 102 | 18 | 116 | 4.64e-13 | 70.1 |
| MS.gene75193.t1 | AT5G15850 | 41.463 | 82 | 48 | 0 | 3 | 84 | 10 | 91 | 6.43e-13 | 69.3 |
| MS.gene75193.t1 | AT5G15840 | 37.000 | 100 | 62 | 1 | 3 | 102 | 18 | 116 | 7.28e-13 | 68.6 |
| MS.gene75193.t1 | AT2G24790 | 35.366 | 82 | 53 | 0 | 3 | 84 | 6 | 87 | 1.17e-12 | 68.2 |
| MS.gene75193.t1 | AT2G24790 | 35.366 | 82 | 53 | 0 | 3 | 84 | 6 | 87 | 1.86e-12 | 66.2 |
Find 66 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCATGGAGAGTTATTT+TGG | 0.172335 | 1.3:-74352870 | MS.gene75193:CDS |
| CCACCAAACATCACTCTAAT+TGG | 0.186429 | 1.3:+74352059 | None:intergenic |
| ACTATGGGGATTTGAATTTA+AGG | 0.203446 | 1.3:-74353863 | MS.gene75193:CDS |
| CAAAACTATGAGGAACTATT+TGG | 0.211793 | 1.3:-74352095 | MS.gene75193:CDS |
| AGCAGATTGTTGATTTAAAA+AGG | 0.229527 | 1.3:-74353101 | MS.gene75193:CDS |
| CAAATAGTTCCTCATAGTTT+TGG | 0.233633 | 1.3:+74352096 | None:intergenic |
| GATCATTCTACAAAGATAAC+TGG | 0.292316 | 1.3:-74353057 | MS.gene75193:CDS |
| CCATAGTGTTGCAAACTCTT+TGG | 0.316623 | 1.3:+74353879 | None:intergenic |
| CGATCTGTCAAATCTTTCAT+TGG | 0.318044 | 1.3:-74353913 | MS.gene75193:CDS |
| CCAAAGAGTTTGCAACACTA+TGG | 0.332185 | 1.3:-74353879 | MS.gene75193:CDS |
| AGACGTCTCTTATTCTTCAT+TGG | 0.353797 | 1.3:-74352033 | MS.gene75193:CDS |
| AATTGTCCGGCCGGCACCTC+CGG | 0.395024 | 1.3:-74354056 | MS.gene75193:CDS |
| AATTAGACCTCCATTGTACT+TGG | 0.396036 | 1.3:+74351972 | None:intergenic |
| TTTGTCTTCATCTTCAGTTA+TGG | 0.410820 | 1.3:-74352899 | MS.gene75193:CDS |
| CCAATGGACCTTTGCATCAC+AGG | 0.442091 | 1.3:+74354086 | None:intergenic |
| TGGAATGTTAAGTCAACGTC+AGG | 0.452059 | 1.3:+74352116 | None:intergenic |
| GATCCAATTAGAGTGATGTT+TGG | 0.455146 | 1.3:-74352062 | MS.gene75193:CDS |
| GTCTGGTGACAATCATGATA+AGG | 0.459630 | 1.3:-74353731 | MS.gene75193:CDS |
| TCAGTCACTTCAACGACGTC+TGG | 0.463294 | 1.3:-74353748 | MS.gene75193:CDS |
| CTCTTATTCTTCATTGGAGA+AGG | 0.464404 | 1.3:-74352027 | MS.gene75193:CDS |
| CATTGGGCAAATGAATTGTC+CGG | 0.481757 | 1.3:-74354069 | MS.gene75193:CDS |
| TACCTGACCTAGTTGACTGC+TGG | 0.483505 | 1.3:+74353705 | None:intergenic |
| ACACAAGGGTCCGGAGGTGC+CGG | 0.485126 | 1.3:+74354046 | None:intergenic |
| CAAAGAGTTTGCAACACTAT+GGG | 0.487640 | 1.3:-74353878 | MS.gene75193:CDS |
| TCTGGTGACAATCATGATAA+GGG | 0.492151 | 1.3:-74353730 | MS.gene75193:CDS |
| CTGTGATGCAAAGGTCCATT+GGG | 0.492787 | 1.3:-74354085 | MS.gene75193:CDS |
| CTTAACATTCCAAAACTATG+AGG | 0.496040 | 1.3:-74352105 | MS.gene75193:CDS |
| ATCCAGCAGTCAACTAGGTC+AGG | 0.498273 | 1.3:-74353707 | MS.gene75193:intron |
| GTTATGGACCTTCCCTTGCA+TGG | 0.501977 | 1.3:-74352883 | MS.gene75193:CDS |
| CCTGTGATGCAAAGGTCCAT+TGG | 0.506685 | 1.3:-74354086 | MS.gene75193:CDS |
| TGGGAGAAGACAATTCTATC+GGG | 0.510510 | 1.3:-74352969 | MS.gene75193:CDS |
| CTGGGAGAAGACAATTCTAT+CGG | 0.513285 | 1.3:-74352970 | MS.gene75193:CDS |
| TGCGATCAAAAGCTACATGA+TGG | 0.526346 | 1.3:-74353955 | MS.gene75193:CDS |
| CCAAAATAACTCTCCATGCA+AGG | 0.527678 | 1.3:+74352870 | None:intergenic |
| CCAATTAGAGTGATGTTTGG+TGG | 0.535280 | 1.3:-74352059 | MS.gene75193:CDS |
| TCTTGCGTATGTTCAGTGCT+TGG | 0.538169 | 1.3:-74354004 | MS.gene75193:CDS |
| ACGAGTTACACACAAGGGTC+CGG | 0.543558 | 1.3:+74354037 | None:intergenic |
| CAAGTTCTTCACATATTCCC+AGG | 0.546412 | 1.3:+74352162 | None:intergenic |
| TGAAAACAGTGTCGATCAGA+AGG | 0.550060 | 1.3:-74353836 | MS.gene75193:CDS |
| GTTTCAGCTAATAGAAGAGA+GGG | 0.550624 | 1.3:-74353079 | MS.gene75193:CDS |
| AACTATGAGGAACTATTTGG+AGG | 0.557150 | 1.3:-74352092 | MS.gene75193:CDS |
| CGGACAATTCATTTGCCCAA+TGG | 0.558043 | 1.3:+74354070 | None:intergenic |
| GTTGCAAACTCTTTGGCAGA+AGG | 0.563765 | 1.3:+74353886 | None:intergenic |
| AAGGGATCCAGCAGTCAACT+AGG | 0.570420 | 1.3:-74353712 | MS.gene75193:CDS |
| GCAGCAAAATATTCAAGACC+TGG | 0.572888 | 1.3:-74352180 | MS.gene75193:CDS |
| TTGTCTATCCTGTGATGCAA+AGG | 0.577128 | 1.3:-74354094 | MS.gene75193:CDS |
| CAAAATAACTCTCCATGCAA+GGG | 0.584415 | 1.3:+74352871 | None:intergenic |
| AAGGGTCCGGAGGTGCCGGC+CGG | 0.586330 | 1.3:+74354050 | None:intergenic |
| AAAGATAACTGGGCTACAAG+TGG | 0.592394 | 1.3:-74353046 | MS.gene75193:CDS |
| GGGCAAATGAATTGTCCGGC+CGG | 0.594066 | 1.3:-74354065 | MS.gene75193:CDS |
| ATAACTCTCCATGCAAGGGA+AGG | 0.600276 | 1.3:+74352875 | None:intergenic |
| CAGCAAAATATTCAAGACCT+GGG | 0.612414 | 1.3:-74352179 | MS.gene75193:CDS |
| ATCATTCTACAAAGATAACT+GGG | 0.615835 | 1.3:-74353056 | MS.gene75193:CDS |
| GCGATCAAAAGCTACATGAT+GGG | 0.617031 | 1.3:-74353954 | MS.gene75193:CDS |
| GGTTTCAGCTAATAGAAGAG+AGG | 0.617889 | 1.3:-74353080 | MS.gene75193:CDS |
| AAAGAGTTTGCAACACTATG+GGG | 0.619686 | 1.3:-74353877 | MS.gene75193:CDS |
| TATTGACAATCCAAGTACAA+TGG | 0.635806 | 1.3:-74351982 | MS.gene75193:CDS |
| TCAGCATTACAGTAAACAAG+TGG | 0.650082 | 1.3:+74354129 | None:intergenic |
| TTGACAGATCGTTTGCGATG+TGG | 0.663808 | 1.3:+74353925 | None:intergenic |
| TGACAATCCAAGTACAATGG+AGG | 0.672160 | 1.3:-74351979 | MS.gene75193:CDS |
| AGTTACACACAAGGGTCCGG+AGG | 0.682408 | 1.3:+74354040 | None:intergenic |
| AAGTTCACTACAAAGTAACC+AGG | 0.683289 | 1.3:-74352839 | MS.gene75193:intron |
| GGGAGAAGACAATTCTATCG+GGG | 0.687222 | 1.3:-74352968 | MS.gene75193:CDS |
| AACAGCACGAGTTACACACA+AGG | 0.692236 | 1.3:+74354031 | None:intergenic |
| TTGCATCACAGGATAGACAA+AGG | 0.703130 | 1.3:+74354097 | None:intergenic |
| ACAGCACGAGTTACACACAA+GGG | 0.726480 | 1.3:+74354032 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTTATTCTTGATT+AGG | + | chr1.3:74353561-74353580 | None:intergenic | 10.0% |
| !! | AAAATCTAAATATATTTCCA+AGG | + | chr1.3:74353394-74353413 | None:intergenic | 15.0% |
| !! | AAATCTAAATATATTTCCAA+GGG | + | chr1.3:74353393-74353412 | None:intergenic | 15.0% |
| !! | ATAAAAATAAATTCATACTC+TGG | - | chr1.3:74353569-74353588 | MS.gene75193:intron | 15.0% |
| !! | ATATTAAAATATACCCTATA+TGG | - | chr1.3:74353474-74353493 | MS.gene75193:intron | 15.0% |
| !! | TATTAAAATATACCCTATAT+GGG | - | chr1.3:74353475-74353494 | MS.gene75193:intron | 15.0% |
| !!! | TTGGAAATATATTTAGATTT+TGG | - | chr1.3:74353393-74353412 | MS.gene75193:intron | 15.0% |
| !! | ATAAGATATCACAGAAATTA+AGG | - | chr1.3:74353598-74353617 | MS.gene75193:intron | 20.0% |
| !!! | GTGTTTTTAAGATTATTAGT+TGG | + | chr1.3:74353437-74353456 | None:intergenic | 20.0% |
| !!! | TGTGGTTTTGATAATTAATA+TGG | + | chr1.3:74352916-74352935 | None:intergenic | 20.0% |
| ! | AAAGGAAACATACATTATGT+GGG | - | chr1.3:74353361-74353380 | MS.gene75193:intron | 25.0% |
| ! | AAATGCAGAAGAAAAAGTTT+CGG | + | chr1.3:74353206-74353225 | None:intergenic | 25.0% |
| ! | AAGGGTTAAAGTATGTAATA+GGG | + | chr1.3:74353666-74353685 | None:intergenic | 25.0% |
| ! | AAGTTTAAATAAATGTCTGC+TGG | + | chr1.3:74353796-74353815 | None:intergenic | 25.0% |
| ! | ATCATTCTACAAAGATAACT+GGG | - | chr1.3:74353083-74353102 | MS.gene75193:CDS | 25.0% |
| ! | ATCATTTGAATTTCCCATAT+AGG | + | chr1.3:74353491-74353510 | None:intergenic | 25.0% |
| ! | ATTATCTTCATCCAAAATCT+TGG | - | chr1.3:74352714-74352733 | MS.gene75193:intron | 25.0% |
| ! | CTTCCAATTCTGATAATAAA+AGG | - | chr1.3:74353512-74353531 | MS.gene75193:intron | 25.0% |
| ! | GAATGCATTAATCATTTCTT+CGG | + | chr1.3:74352745-74352764 | None:intergenic | 25.0% |
| ! | GATTAATGCATTCTTAACTA+AGG | - | chr1.3:74352752-74352771 | MS.gene75193:intron | 25.0% |
| ! | GTACTTTAACTAACACTTTA+AGG | + | chr1.3:74352819-74352838 | None:intergenic | 25.0% |
| ! | TATAGATTTCATCAGTGATA+AGG | + | chr1.3:74352485-74352504 | None:intergenic | 25.0% |
| ! | TCATTTGAATTTCCCATATA+GGG | + | chr1.3:74353490-74353509 | None:intergenic | 25.0% |
| ! | TTATCTTCATCCAAAATCTT+GGG | - | chr1.3:74352715-74352734 | MS.gene75193:intron | 25.0% |
| ! | TTTACCTTCTCATAAATGAT+TGG | - | chr1.3:74352546-74352565 | MS.gene75193:intron | 25.0% |
| !! | ATTGTTTAGTATTGAACGTT+AGG | - | chr1.3:74353876-74353895 | MS.gene75193:CDS | 25.0% |
| !! | CTTTTATTATCAGAATTGGA+AGG | + | chr1.3:74353514-74353533 | None:intergenic | 25.0% |
| !! | GTTCCTTTTATTATCAGAAT+TGG | + | chr1.3:74353518-74353537 | None:intergenic | 25.0% |
| !!! | AGCAGATTGTTGATTTAAAA+AGG | - | chr1.3:74353038-74353057 | MS.gene75193:CDS | 25.0% |
| !!! | TTTAGATTTTGGTGTAGAAT+AGG | - | chr1.3:74353404-74353423 | MS.gene75193:intron | 25.0% |
| AAGGAAACATACATTATGTG+GGG | - | chr1.3:74353362-74353381 | MS.gene75193:intron | 30.0% | |
| AAGGAGTTCGTAACAATTAT+AGG | - | chr1.3:74352771-74352790 | MS.gene75193:intron | 30.0% | |
| AATGCAGAAGAAAAAGTTTC+GGG | + | chr1.3:74353205-74353224 | None:intergenic | 30.0% | |
| ACTATGGGGATTTGAATTTA+AGG | - | chr1.3:74352276-74352295 | MS.gene75193:intron | 30.0% | |
| AGAGGGATTGATCAAAATAA+TGG | + | chr1.3:74353640-74353659 | None:intergenic | 30.0% | |
| AGGGTTAAAGTATGTAATAG+GGG | + | chr1.3:74353665-74353684 | None:intergenic | 30.0% | |
| AGTACCAATCATTTATGAGA+AGG | + | chr1.3:74352553-74352572 | None:intergenic | 30.0% | |
| AGTTCGTAACAATTATAGGA+AGG | - | chr1.3:74352775-74352794 | MS.gene75193:intron | 30.0% | |
| CAAAACTATGAGGAACTATT+TGG | - | chr1.3:74354044-74354063 | MS.gene75193:CDS | 30.0% | |
| CAAGGGTTAAAGTATGTAAT+AGG | + | chr1.3:74353667-74353686 | None:intergenic | 30.0% | |
| CTTAACATTCCAAAACTATG+AGG | - | chr1.3:74354034-74354053 | MS.gene75193:CDS | 30.0% | |
| GAAAGGAAACATACATTATG+TGG | - | chr1.3:74353360-74353379 | MS.gene75193:intron | 30.0% | |
| GATCATTCTACAAAGATAAC+TGG | - | chr1.3:74353082-74353101 | MS.gene75193:CDS | 30.0% | |
| TATCAAAACCACAAGTACAA+TGG | - | chr1.3:74352923-74352942 | MS.gene75193:CDS | 30.0% | |
| TATTGACAATCCAAGTACAA+TGG | - | chr1.3:74354157-74354176 | MS.gene75193:CDS | 30.0% | |
| TGTATGTTTCCTTTCAATTG+TGG | + | chr1.3:74353355-74353374 | None:intergenic | 30.0% | |
| TTTGTCTTCATCTTCAGTTA+TGG | - | chr1.3:74353240-74353259 | MS.gene75193:intron | 30.0% | |
| TTTGTTGATGTTTGCAGTTA+TGG | - | chr1.3:74353937-74353956 | MS.gene75193:CDS | 30.0% | |
| ! | AATGATTCACACTTTTATGC+TGG | - | chr1.3:74352643-74352662 | MS.gene75193:intron | 30.0% |
| ! | CAAATAGTTCCTCATAGTTT+TGG | + | chr1.3:74354046-74354065 | None:intergenic | 30.0% |
| ! | GATTTTGGATGAAGATAATG+TGG | + | chr1.3:74352713-74352732 | None:intergenic | 30.0% |
| ! | GTTTTACTTCTAGTCAAAAG+TGG | - | chr1.3:74353905-74353924 | MS.gene75193:CDS | 30.0% |
| ! | TATTTTGCTACTAATCTGCT+GGG | - | chr1.3:74353151-74353170 | MS.gene75193:intron | 30.0% |
| ! | TGTGAATCATTTTCTAACTC+TGG | + | chr1.3:74352634-74352653 | None:intergenic | 30.0% |
| !! | AAGTACGATGATTCTTGTTT+TGG | - | chr1.3:74352833-74352852 | MS.gene75193:intron | 30.0% |
| !!! | GATTCTTGTTTTGGTTTCTA+AGG | - | chr1.3:74352842-74352861 | MS.gene75193:CDS | 30.0% |
| AAAGAGTTTGCAACACTATG+GGG | - | chr1.3:74352262-74352281 | MS.gene75193:intron | 35.0% | |
| AACTATGAGGAACTATTTGG+AGG | - | chr1.3:74354047-74354066 | MS.gene75193:CDS | 35.0% | |
| AAGTTCACTACAAAGTAACC+AGG | - | chr1.3:74353300-74353319 | MS.gene75193:intron | 35.0% | |
| AGACGTCTCTTATTCTTCAT+TGG | - | chr1.3:74354106-74354125 | MS.gene75193:CDS | 35.0% | |
| AGATTTCATCAGTGATAAGG+AGG | + | chr1.3:74352482-74352501 | None:intergenic | 35.0% | |
| ATGCAGAAGAAAAAGTTTCG+GGG | + | chr1.3:74353204-74353223 | None:intergenic | 35.0% | |
| CAAAATAACTCTCCATGCAA+GGG | + | chr1.3:74353271-74353290 | None:intergenic | 35.0% | |
| CAAAGAGTTTGCAACACTAT+GGG | - | chr1.3:74352261-74352280 | MS.gene75193:intron | 35.0% | |
| CAGCAAAATATTCAAGACCT+GGG | - | chr1.3:74353960-74353979 | MS.gene75193:CDS | 35.0% | |
| CGATCTGTCAAATCTTTCAT+TGG | - | chr1.3:74352226-74352245 | MS.gene75193:intron | 35.0% | |
| CTCTTATTCTTCATTGGAGA+AGG | - | chr1.3:74354112-74354131 | MS.gene75193:CDS | 35.0% | |
| CTGTTTGATTAATGTGTGCA+AGG | + | chr1.3:74353747-74353766 | None:intergenic | 35.0% | |
| GAAATCATCTCGACAAACAA+GGG | + | chr1.3:74353684-74353703 | None:intergenic | 35.0% | |
| GACTATTGAAGTCAAATGTC+AGG | + | chr1.3:74353713-74353732 | None:intergenic | 35.0% | |
| GATCCAATTAGAGTGATGTT+TGG | - | chr1.3:74354077-74354096 | MS.gene75193:CDS | 35.0% | |
| GGGTTAAAGTATGTAATAGG+GGG | + | chr1.3:74353664-74353683 | None:intergenic | 35.0% | |
| GTTTCAGCTAATAGAAGAGA+GGG | - | chr1.3:74353060-74353079 | MS.gene75193:CDS | 35.0% | |
| TCAGCATTACAGTAAACAAG+TGG | + | chr1.3:74352013-74352032 | None:intergenic | 35.0% | |
| TCTGGTGACAATCATGATAA+GGG | - | chr1.3:74352409-74352428 | MS.gene75193:intron | 35.0% | |
| TGAAATCATCTCGACAAACA+AGG | + | chr1.3:74353685-74353704 | None:intergenic | 35.0% | |
| TTAGGATTACTTGACGCTTA+AGG | + | chr1.3:74353543-74353562 | None:intergenic | 35.0% | |
| TTTGGATGAAGATAATGTGG+AGG | + | chr1.3:74352710-74352729 | None:intergenic | 35.0% | |
| ! | GACATTTGACTTCAATAGTC+TGG | - | chr1.3:74353713-74353732 | MS.gene75193:CDS | 35.0% |
| ! | GTATTTTGCTACTAATCTGC+TGG | - | chr1.3:74353150-74353169 | MS.gene75193:intron | 35.0% |
| AAAGATAACTGGGCTACAAG+TGG | - | chr1.3:74353093-74353112 | MS.gene75193:CDS | 40.0% | |
| AAGTATGTAATAGGGGGAAG+AGG | + | chr1.3:74353658-74353677 | None:intergenic | 40.0% | |
| AGTATGTAATAGGGGGAAGA+GGG | + | chr1.3:74353657-74353676 | None:intergenic | 40.0% | |
| ATGAAGCGATGAATCTTGTG+AGG | - | chr1.3:74352574-74352593 | MS.gene75193:intron | 40.0% | |
| CAAAACCACAAGTACAATGG+AGG | - | chr1.3:74352926-74352945 | MS.gene75193:CDS | 40.0% | |
| CAAGTTCTTCACATATTCCC+AGG | + | chr1.3:74353980-74353999 | None:intergenic | 40.0% | |
| CATTGGGCAAATGAATTGTC+CGG | - | chr1.3:74352070-74352089 | MS.gene75193:CDS | 40.0% | |
| CCAAAATAACTCTCCATGCA+AGG | + | chr1.3:74353272-74353291 | None:intergenic | 40.0% | |
| CCAAAGAGTTTGCAACACTA+TGG | - | chr1.3:74352260-74352279 | MS.gene75193:intron | 40.0% | |
| CCAATTAGAGTGATGTTTGG+TGG | - | chr1.3:74354080-74354099 | MS.gene75193:CDS | 40.0% | |
| CCACCAAACATCACTCTAAT+TGG | + | chr1.3:74354083-74354102 | None:intergenic | 40.0% | |
| CCATAGTGTTGCAAACTCTT+TGG | + | chr1.3:74352263-74352282 | None:intergenic | 40.0% | |
| CTGGGAGAAGACAATTCTAT+CGG | - | chr1.3:74353169-74353188 | MS.gene75193:intron | 40.0% | |
| GCAGCAAAATATTCAAGACC+TGG | - | chr1.3:74353959-74353978 | MS.gene75193:CDS | 40.0% | |
| GCGATCAAAAGCTACATGAT+GGG | - | chr1.3:74352185-74352204 | MS.gene75193:CDS | 40.0% | |
| GGATAGATAAGTATCTGACC+TGG | + | chr1.3:74353321-74353340 | None:intergenic | 40.0% | |
| GGTTTCAGCTAATAGAAGAG+AGG | - | chr1.3:74353059-74353078 | MS.gene75193:CDS | 40.0% | |
| GTCTGGTGACAATCATGATA+AGG | - | chr1.3:74352408-74352427 | MS.gene75193:intron | 40.0% | |
| TGACAATCCAAGTACAATGG+AGG | - | chr1.3:74354160-74354179 | MS.gene75193:CDS | 40.0% | |
| TGCGATCAAAAGCTACATGA+TGG | - | chr1.3:74352184-74352203 | MS.gene75193:CDS | 40.0% | |
| TGGAATGTTAAGTCAACGTC+AGG | + | chr1.3:74354026-74354045 | None:intergenic | 40.0% | |
| TGGGAGAAGACAATTCTATC+GGG | - | chr1.3:74353170-74353189 | MS.gene75193:intron | 40.0% | |
| TGTTGTGAGCCACAATTGAA+AGG | - | chr1.3:74353343-74353362 | MS.gene75193:intron | 40.0% | |
| TTGCATCACAGGATAGACAA+AGG | + | chr1.3:74352045-74352064 | None:intergenic | 40.0% | |
| TTGTCTATCCTGTGATGCAA+AGG | - | chr1.3:74352045-74352064 | MS.gene75193:CDS | 40.0% | |
| ! | AATGTGGAGGCTCACATTTT+AGG | + | chr1.3:74352697-74352716 | None:intergenic | 40.0% |
| ! | CCTTGCATGGAGAGTTATTT+TGG | - | chr1.3:74353269-74353288 | MS.gene75193:intron | 40.0% |
| ! | CTTCGGTTTTCCCAAGATTT+TGG | + | chr1.3:74352728-74352747 | None:intergenic | 40.0% |
| ! | GTGAATTTTGCACAGCATTG+AGG | - | chr1.3:74351987-74352006 | MS.gene75193:CDS | 40.0% |
| ! | TTTTATGCTGGTCACAGCAT+TGG | - | chr1.3:74352655-74352674 | MS.gene75193:intron | 40.0% |
| !! | TGAAAACAGTGTCGATCAGA+AGG | - | chr1.3:74352303-74352322 | MS.gene75193:intron | 40.0% |
| AACAGCACGAGTTACACACA+AGG | + | chr1.3:74352111-74352130 | None:intergenic | 45.0% | |
| AAGCGATGAATCTTGTGAGG+AGG | - | chr1.3:74352577-74352596 | MS.gene75193:intron | 45.0% | |
| ACAGCACGAGTTACACACAA+GGG | + | chr1.3:74352110-74352129 | None:intergenic | 45.0% | |
| ATAACTCTCCATGCAAGGGA+AGG | + | chr1.3:74353267-74353286 | None:intergenic | 45.0% | |
| ATTATGTGGGGTACATCCCT+TGG | - | chr1.3:74353374-74353393 | MS.gene75193:intron | 45.0% | |
| CGGACAATTCATTTGCCCAA+TGG | + | chr1.3:74352072-74352091 | None:intergenic | 45.0% | |
| CTGTGATGCAAAGGTCCATT+GGG | - | chr1.3:74352054-74352073 | MS.gene75193:CDS | 45.0% | |
| GGGAGAAGACAATTCTATCG+GGG | - | chr1.3:74353171-74353190 | MS.gene75193:intron | 45.0% | |
| GTTGCAAACTCTTTGGCAGA+AGG | + | chr1.3:74352256-74352275 | None:intergenic | 45.0% | |
| TCAATTGTGGCTCACAACAG+TGG | + | chr1.3:74353342-74353361 | None:intergenic | 45.0% | |
| TCAGACCTCCATTGTACTTG+TGG | + | chr1.3:74352934-74352953 | None:intergenic | 45.0% | |
| TCTTGCGTATGTTCAGTGCT+TGG | - | chr1.3:74352135-74352154 | MS.gene75193:CDS | 45.0% | |
| TTGACAGATCGTTTGCGATG+TGG | + | chr1.3:74352217-74352236 | None:intergenic | 45.0% | |
| AAGGGATCCAGCAGTCAACT+AGG | - | chr1.3:74352427-74352446 | MS.gene75193:intron | 50.0% | |
| ACGAGTTACACACAAGGGTC+CGG | + | chr1.3:74352105-74352124 | None:intergenic | 50.0% | |
| ATCCAGCAGTCAACTAGGTC+AGG | - | chr1.3:74352432-74352451 | MS.gene75193:intron | 50.0% | |
| CCAATGGACCTTTGCATCAC+AGG | + | chr1.3:74352056-74352075 | None:intergenic | 50.0% | |
| CCTGTGATGCAAAGGTCCAT+TGG | - | chr1.3:74352053-74352072 | MS.gene75193:CDS | 50.0% | |
| GTTATGGACCTTCCCTTGCA+TGG | - | chr1.3:74353256-74353275 | MS.gene75193:intron | 50.0% | |
| TACCTGACCTAGTTGACTGC+TGG | + | chr1.3:74352437-74352456 | None:intergenic | 50.0% | |
| TCAGTCACTTCAACGACGTC+TGG | - | chr1.3:74352391-74352410 | MS.gene75193:intron | 50.0% | |
| ! | GTGGAGGCTCACATTTTAGG+AGG | + | chr1.3:74352694-74352713 | None:intergenic | 50.0% |
| AGTTACACACAAGGGTCCGG+AGG | + | chr1.3:74352102-74352121 | None:intergenic | 55.0% | |
| GGGCAAATGAATTGTCCGGC+CGG | - | chr1.3:74352074-74352093 | MS.gene75193:CDS | 55.0% | |
| AATTGTCCGGCCGGCACCTC+CGG | - | chr1.3:74352083-74352102 | MS.gene75193:CDS | 65.0% | |
| ! | ACACAAGGGTCCGGAGGTGC+CGG | + | chr1.3:74352096-74352115 | None:intergenic | 65.0% |
| !! | AAGGGTCCGGAGGTGCCGGC+CGG | + | chr1.3:74352092-74352111 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 74351974 | 74354187 | 74351974 | ID=MS.gene75193 |
| chr1.3 | mRNA | 74351974 | 74354187 | 74351974 | ID=MS.gene75193.t1;Parent=MS.gene75193 |
| chr1.3 | exon | 74353708 | 74354187 | 74353708 | ID=MS.gene75193.t1.exon1;Parent=MS.gene75193.t1 |
| chr1.3 | CDS | 74353708 | 74354187 | 74353708 | ID=cds.MS.gene75193.t1;Parent=MS.gene75193.t1 |
| chr1.3 | exon | 74352840 | 74353160 | 74352840 | ID=MS.gene75193.t1.exon2;Parent=MS.gene75193.t1 |
| chr1.3 | CDS | 74352840 | 74353160 | 74352840 | ID=cds.MS.gene75193.t1;Parent=MS.gene75193.t1 |
| chr1.3 | exon | 74351974 | 74352207 | 74351974 | ID=MS.gene75193.t1.exon3;Parent=MS.gene75193.t1 |
| chr1.3 | CDS | 74351974 | 74352207 | 74351974 | ID=cds.MS.gene75193.t1;Parent=MS.gene75193.t1 |
| Gene Sequence |
| Protein sequence |
