AlfalfaGEDB | MS.gene75193

M. sativa cultivar XinJiangDaYe / MS.gene75193

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75193.t1	XP_013470128.1	94.5	344	19	0	1	344	1	344	1.50E-185	658.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75193.t1	Q9C9F4	32.2	342	174	8	1	339	10	296	7.6e-37	156.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75193.t1	G8A287	94.5	344	19	0	1	344	1	344	1.1e-185	658.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050076	MS.gene75193	0.817497	3.20E-52	-1.69E-46
MS.gene051471	MS.gene75193	0.809788	1.59E-50	-1.69E-46
MS.gene052290	MS.gene75193	0.820045	8.44E-53	-1.69E-46
MS.gene052326	MS.gene75193	0.810835	9.46E-51	-1.69E-46
MS.gene055254	MS.gene75193	0.818566	1.83E-52	-1.69E-46
MS.gene055422	MS.gene75193	0.80105	1.08E-48	-1.69E-46
MS.gene055896	MS.gene75193	0.824121	9.58E-54	-1.69E-46
MS.gene058660	MS.gene75193	0.808597	2.86E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75193.t1	MTR_1g109350	94.477	344	19	0	1	344	1	344	0.0	673
MS.gene75193.t1	MTR_5g069480	47.541	122	60	2	1	119	1	121	2.27e-31	120
MS.gene75193.t1	MTR_5g069480	47.541	122	60	2	1	119	1	121	3.83e-31	122
MS.gene75193.t1	MTR_3g082630	44.860	107	57	1	1	105	1	107	5.07e-25	105
MS.gene75193.t1	MTR_2g088900	46.154	104	55	1	1	103	97	200	4.05e-23	100
MS.gene75193.t1	MTR_7g108150	38.679	106	63	1	3	106	18	123	2.14e-20	91.3
MS.gene75193.t1	MTR_7g083540	33.333	117	69	1	1	108	1	117	3.08e-17	82.4
MS.gene75193.t1	MTR_1g013450	34.146	82	54	0	3	84	4	85	4.16e-13	69.7
MS.gene75193.t1	MTR_3g105710	34.783	92	57	1	3	91	4	95	5.17e-12	65.9
MS.gene75193.t1	MTR_7g018170	37.838	74	46	0	3	76	24	97	2.91e-11	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75193.t1	AT1G68190	38.535	314	135	8	1	311	10	268	4.22e-65	210
MS.gene75193.t1	AT1G68190	38.535	314	135	8	1	311	10	268	4.22e-65	210
MS.gene75193.t1	AT1G68190	38.535	314	135	8	1	311	39	297	1.23e-64	209
MS.gene75193.t1	AT5G48250	45.455	110	55	1	1	105	1	110	1.34e-27	111
MS.gene75193.t1	AT3G07650	41.880	117	56	2	1	105	1	117	9.32e-25	103
MS.gene75193.t1	AT3G07650	41.880	117	56	2	1	105	1	117	9.32e-25	103
MS.gene75193.t1	AT3G07650	41.880	117	56	2	1	105	1	117	9.32e-25	103
MS.gene75193.t1	AT3G07650	41.880	117	56	2	1	105	1	117	9.32e-25	103
MS.gene75193.t1	AT2G33500	39.252	107	62	1	5	108	12	118	1.50e-22	97.8
MS.gene75193.t1	AT2G33500	39.252	107	62	1	5	108	12	118	1.53e-22	97.8

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Find 66 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTTTGCAACACTATG+GGG	0.619686	1.3:-74353877	MS.gene75193:CDS
AAAGATAACTGGGCTACAAG+TGG	0.592394	1.3:-74353046	MS.gene75193:CDS
AACAGCACGAGTTACACACA+AGG	0.692236	1.3:+74354031	None:intergenic
AACTATGAGGAACTATTTGG+AGG	0.557150	1.3:-74352092	MS.gene75193:CDS
AAGGGATCCAGCAGTCAACT+AGG	0.570420	1.3:-74353712	MS.gene75193:CDS
AAGGGTCCGGAGGTGCCGGC+CGG	0.586330	1.3:+74354050	None:intergenic
AAGTTCACTACAAAGTAACC+AGG	0.683289	1.3:-74352839	MS.gene75193:intron
AATTAGACCTCCATTGTACT+TGG	0.396036	1.3:+74351972	None:intergenic
AATTGTCCGGCCGGCACCTC+CGG	0.395024	1.3:-74354056	MS.gene75193:CDS
ACACAAGGGTCCGGAGGTGC+CGG	0.485126	1.3:+74354046	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGAAACATACATTATGTG+GGG	-	chr1.3:74353362-74353381	MS.gene75193:intron	30.0%
AAGGAGTTCGTAACAATTAT+AGG	-	chr1.3:74352771-74352790	MS.gene75193:intron	30.0%
AATGCAGAAGAAAAAGTTTC+GGG	+	chr1.3:74353205-74353224	None:intergenic	30.0%
ACTATGGGGATTTGAATTTA+AGG	-	chr1.3:74352276-74352295	MS.gene75193:intron	30.0%
AGAGGGATTGATCAAAATAA+TGG	+	chr1.3:74353640-74353659	None:intergenic	30.0%
AGGGTTAAAGTATGTAATAG+GGG	+	chr1.3:74353665-74353684	None:intergenic	30.0%
AGTACCAATCATTTATGAGA+AGG	+	chr1.3:74352553-74352572	None:intergenic	30.0%
AGTTCGTAACAATTATAGGA+AGG	-	chr1.3:74352775-74352794	MS.gene75193:intron	30.0%
CAAAACTATGAGGAACTATT+TGG	-	chr1.3:74354044-74354063	MS.gene75193:CDS	30.0%
CAAGGGTTAAAGTATGTAAT+AGG	+	chr1.3:74353667-74353686	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	74351974	74354187	74351974	ID=MS.gene75193
chr1.3	mRNA	74351974	74354187	74351974	ID=MS.gene75193.t1;Parent=MS.gene75193
chr1.3	exon	74353708	74354187	74353708	ID=MS.gene75193.t1.exon1;Parent=MS.gene75193.t1
chr1.3	CDS	74353708	74354187	74353708	ID=cds.MS.gene75193.t1;Parent=MS.gene75193.t1
chr1.3	exon	74352840	74353160	74352840	ID=MS.gene75193.t1.exon2;Parent=MS.gene75193.t1
chr1.3	CDS	74352840	74353160	74352840	ID=cds.MS.gene75193.t1;Parent=MS.gene75193.t1
chr1.3	exon	74351974	74352207	74351974	ID=MS.gene75193.t1.exon3;Parent=MS.gene75193.t1
chr1.3	CDS	74351974	74352207	74351974	ID=cds.MS.gene75193.t1;Parent=MS.gene75193.t1

Gene Sequence

>MS.gene75193

ATGGAGAAAATTTGTGAATTTTGCACAGCATTGAGGCCACTTGTTTACTGTAATGCTGATGCAGCATACCTTTGTCTATCCTGTGATGCAAAGGTCCATTGGGCAAATGAATTGTCCGGCCGGCACCTCCGGACCCTTGTGTGTAACTCGTGCTGTTGTGATCTTGCGTATGTTCAGTGCTTGGATCACAAAATATTAATTTGTAGAGACTGCGATCAAAAGCTACATGATGGGTCTTCACCACATCGCAAACGATCTGTCAAATCTTTCATTGGTTGTCCTTCTGCCAAAGAGTTTGCAACACTATGGGGATTTGAATTTAAGGAGATTGAAAACAGTGTCGATCAGAAGGATCATTTTGCATCTATTTCTTGTGTTGCTACAGATGTAAATGTGATCAAGAATCGTATTCGAACTTCAGTCACTTCAACGACGTCTGGTGACAATCATGATAAGGGATCCAGCAGTCAACTAGGTCAGGTATGCAAATTTGTAAAATTTATTACCTCCTTATCACTGATGAAATCTATAAATTTTCTATTTAAGTCATTGCAAATTTACAGTGATAGCTATTTACCTTCTCATAAATGATTGGTACTAATGAAGCGATGAATCTTGTGAGGAGGTATGTAAATCAGTAGAAGAGTGCTTAATATTCCAGAGTTAGAAAATGATTCACACTTTTATGCTGGTCACAGCATTGGATTTCAACTTTCTCCTCCTAAAATGTGAGCCTCCACATTATCTTCATCCAAAATCTTGGGAAAACCGAAGAAATGATTAATGCATTCTTAACTAAGGAGTTCGTAACAATTATAGGAAGGTGTAATTTGAAATTCACTCCTTAAAGTGTTAGTTAAAGTACGATGATTCTTGTTTTGGTTTCTAAGGTCGACTCAGTAAATCAAAGTCACAAATTGTACATTTTGAAGATAATTGCCATATTAATTATCAAAACCACAAGTACAATGGAGGTCTGAATCAAAGTCATAAACATCTTAGTGTTTAATTACTTGAGTTGTGACAGATATTGTACAGTGATCAAGAGAAGCAAACTATTCTGCAGCAGATTGTTGATTTAAAAAGGTTTCAGCTAATAGAAGAGAGGGATCATTCTACAAAGATAACTGGGCTACAAGTGGATGAAAAATTTAATCAACAAGCACAAAAATCTCAGTATTTTGCTACTAATCTGCTGGGAGAAGACAATTCTATCGGGGAGCTGAACCCCGAAACTTTTTCTTCTGCATTTTCTCAACTTGATAATTTGTCTTCATCTTCAGTTATGGACCTTCCCTTGCATGGAGAGTTATTTTGGACTTCTAAAAGTTCACTACAAAGTAACCAGGTCAGATACTTATCTATCCACTGTTGTGAGCCACAATTGAAAGGAAACATACATTATGTGGGGTACATCCCTTGGAAATATATTTAGATTTTGGTGTAGAATAGGAACATAACCAACTAATAATCTTAAAAACACTCAGAATTCAGTATTTGATATTAAAATATACCCTATATGGGAAATTCAAATGATCCTTCCAATTCTGATAATAAAAGGAACTGCCTTAAGCGTCAAGTAATCCTAATCAAGAATAAAAATAAATTCATACTCTGGCTAGTGATAAGATATCACAGAAATTAAGGACTCATTCTGACTAAACCATTATTTTGATCAATCCCTCTTCCCCCTATTACATACTTTAACCCTTGTTTGTCGAGATGATTTCAATATACCTGACATTTGACTTCAATAGTCTGGAGCATTTTCCTTGCACACATTAATCAAACAGAAAACTTCATGTTGATGCTAGTTTAGCCAGCAGACATTTATTTAAACTTTGTTTTGATGACTGTATTAACATTCAGTTCAATGAAGTTTGATATGTCGACTTTATATTAATTGTTTAGTATTGAACGTTAGGTTAACTGTTTTACTTCTAGTCAAAAGTGGAAATTTCATTTTGTTGATGTTTGCAGTTATGGCAGCAAAATATTCAAGACCTGGGAATATGTGAAGAACTTGTTTGTCGAGACGATTTCAACATACCTGACGTTGACTTAACATTCCAAAACTATGAGGAACTATTTGGAGGAGATCAAGATCCAATTAGAGTGATGTTTGGTGGCAAAGACGTCTCTTATTCTTCATTGGAGAAGGATTTATCAGTTGATAATTCAGATATTGACAATCCAAGTACAATGGAGGTCTAA

Protein sequence

>MS.gene75193.t1

MEKICEFCTALRPLVYCNADAAYLCLSCDAKVHWANELSGRHLRTLVCNSCCCDLAYVQCLDHKILICRDCDQKLHDGSSPHRKRSVKSFIGCPSAKEFATLWGFEFKEIENSVDQKDHFASISCVATDVNVIKNRIRTSVTSTTSGDNHDKGSSSQLGQILYSDQEKQTILQQIVDLKRFQLIEERDHSTKITGLQVDEKFNQQAQKSQYFATNLLGEDNSIGELNPETFSSAFSQLDNLSSSSVMDLPLHGELFWTSKSSLQSNQLWQQNIQDLGICEELVCRDDFNIPDVDLTFQNYEELFGGDQDPIRVMFGGKDVSYSSLEKDLSVDNSDIDNPSTMEV