Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75204.t1 | XP_013470162.1 | 98.4 | 315 | 5 | 0 | 1 | 315 | 97 | 411 | 1.90E-182 | 648.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75204.t1 | Q65XS5 | 34.2 | 310 | 152 | 9 | 29 | 291 | 85 | 389 | 1.7e-38 | 161.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75204.t1 | A0A072W1N5 | 98.4 | 315 | 5 | 0 | 1 | 315 | 97 | 411 | 1.3e-182 | 648.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002006 | MS.gene75204 | PPI |
| MS.gene047241 | MS.gene75204 | PPI |
| MS.gene072101 | MS.gene75204 | PPI |
| MS.gene00579 | MS.gene75204 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75204.t1 | MTR_1g110290 | 98.413 | 315 | 5 | 0 | 1 | 315 | 97 | 411 | 0.0 | 652 |
| MS.gene75204.t1 | MTR_5g055480 | 74.747 | 297 | 74 | 1 | 1 | 297 | 95 | 390 | 5.67e-173 | 484 |
| MS.gene75204.t1 | MTR_6g083830 | 64.214 | 299 | 104 | 3 | 1 | 297 | 122 | 419 | 3.22e-145 | 416 |
| MS.gene75204.t1 | MTR_5g006930 | 64.214 | 299 | 104 | 3 | 1 | 297 | 89 | 386 | 1.21e-141 | 405 |
| MS.gene75204.t1 | MTR_5g006920 | 62.207 | 299 | 110 | 3 | 1 | 297 | 124 | 421 | 4.78e-135 | 390 |
| MS.gene75204.t1 | MTR_1g016880 | 56.856 | 299 | 126 | 3 | 1 | 297 | 79 | 376 | 9.42e-128 | 369 |
| MS.gene75204.t1 | MTR_3g104840 | 57.383 | 298 | 106 | 4 | 2 | 297 | 115 | 393 | 2.78e-123 | 359 |
| MS.gene75204.t1 | MTR_2g005350 | 54.698 | 298 | 132 | 2 | 2 | 297 | 142 | 438 | 1.09e-119 | 351 |
| MS.gene75204.t1 | MTR_8g015500 | 54.882 | 297 | 131 | 3 | 1 | 295 | 116 | 411 | 2.05e-116 | 342 |
| MS.gene75204.t1 | MTR_3g108740 | 41.905 | 315 | 145 | 6 | 3 | 288 | 66 | 371 | 4.81e-75 | 235 |
| MS.gene75204.t1 | MTR_1g009960 | 41.935 | 310 | 152 | 5 | 3 | 288 | 85 | 390 | 1.55e-74 | 234 |
| MS.gene75204.t1 | MTR_4g127550 | 41.121 | 321 | 156 | 8 | 6 | 303 | 84 | 394 | 1.11e-71 | 227 |
| MS.gene75204.t1 | MTR_1g009960 | 44.444 | 261 | 136 | 3 | 3 | 256 | 85 | 343 | 2.58e-69 | 220 |
| MS.gene75204.t1 | MTR_2g037600 | 41.905 | 315 | 149 | 8 | 3 | 290 | 79 | 386 | 2.86e-69 | 221 |
| MS.gene75204.t1 | MTR_2g037620 | 41.754 | 285 | 140 | 6 | 28 | 290 | 97 | 377 | 2.49e-68 | 218 |
| MS.gene75204.t1 | MTR_2g024120 | 36.593 | 317 | 157 | 9 | 13 | 288 | 46 | 359 | 1.15e-52 | 177 |
| MS.gene75204.t1 | MTR_8g094180 | 35.463 | 313 | 148 | 9 | 28 | 291 | 55 | 362 | 3.80e-50 | 170 |
| MS.gene75204.t1 | MTR_8g094180 | 35.714 | 266 | 136 | 6 | 28 | 261 | 55 | 317 | 1.25e-46 | 160 |
| MS.gene75204.t1 | MTR_3g106930 | 36.184 | 304 | 177 | 8 | 5 | 295 | 75 | 374 | 9.46e-46 | 159 |
| MS.gene75204.t1 | MTR_1g048320 | 35.897 | 312 | 172 | 9 | 3 | 295 | 39 | 341 | 3.83e-41 | 146 |
| MS.gene75204.t1 | MTR_2g087610 | 35.333 | 300 | 149 | 12 | 29 | 295 | 78 | 365 | 5.66e-40 | 144 |
| MS.gene75204.t1 | MTR_1g031060 | 35.556 | 315 | 172 | 10 | 3 | 295 | 54 | 359 | 4.53e-38 | 139 |
| MS.gene75204.t1 | MTR_1g031080 | 34.855 | 241 | 128 | 7 | 76 | 295 | 57 | 289 | 1.79e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75204.t1 | AT1G68390 | 65.333 | 300 | 100 | 3 | 1 | 297 | 110 | 408 | 1.32e-145 | 416 |
| MS.gene75204.t1 | AT5G11730 | 58.054 | 298 | 123 | 2 | 1 | 297 | 90 | 386 | 5.76e-130 | 375 |
| MS.gene75204.t1 | AT3G21310 | 57.576 | 297 | 124 | 2 | 2 | 297 | 88 | 383 | 3.96e-126 | 365 |
| MS.gene75204.t1 | AT3G21310 | 57.576 | 297 | 124 | 2 | 2 | 297 | 88 | 383 | 3.96e-126 | 365 |
| MS.gene75204.t1 | AT5G25970 | 57.095 | 296 | 125 | 2 | 1 | 295 | 91 | 385 | 4.14e-126 | 366 |
| MS.gene75204.t1 | AT5G25970 | 57.095 | 296 | 125 | 2 | 1 | 295 | 91 | 385 | 4.14e-126 | 366 |
| MS.gene75204.t1 | AT5G25970 | 57.095 | 296 | 125 | 2 | 1 | 295 | 91 | 385 | 4.14e-126 | 366 |
| MS.gene75204.t1 | AT1G10880 | 59.107 | 291 | 116 | 3 | 3 | 292 | 93 | 381 | 3.08e-125 | 363 |
| MS.gene75204.t1 | AT1G68380 | 58.609 | 302 | 115 | 5 | 1 | 297 | 96 | 392 | 2.37e-124 | 362 |
| MS.gene75204.t1 | AT1G10280 | 53.356 | 298 | 136 | 2 | 2 | 297 | 116 | 412 | 1.40e-120 | 353 |
| MS.gene75204.t1 | AT1G73810 | 60.465 | 301 | 111 | 5 | 1 | 297 | 122 | 418 | 1.87e-119 | 350 |
| MS.gene75204.t1 | AT1G51770 | 55.556 | 297 | 130 | 2 | 2 | 297 | 97 | 392 | 2.62e-118 | 347 |
| MS.gene75204.t1 | AT5G16170 | 55.839 | 274 | 116 | 2 | 29 | 297 | 136 | 409 | 7.51e-114 | 335 |
| MS.gene75204.t1 | AT1G51770 | 50.168 | 297 | 119 | 3 | 2 | 297 | 97 | 365 | 2.31e-101 | 302 |
| MS.gene75204.t1 | AT4G31350 | 42.014 | 288 | 139 | 4 | 28 | 292 | 88 | 370 | 3.92e-75 | 235 |
| MS.gene75204.t1 | AT4G31350 | 42.014 | 288 | 139 | 4 | 28 | 292 | 88 | 370 | 3.92e-75 | 235 |
| MS.gene75204.t1 | AT4G31350 | 42.014 | 288 | 139 | 4 | 28 | 292 | 88 | 370 | 3.92e-75 | 235 |
| MS.gene75204.t1 | AT4G31350 | 40.000 | 285 | 144 | 3 | 28 | 292 | 88 | 365 | 1.71e-70 | 223 |
| MS.gene75204.t1 | AT4G30060 | 39.185 | 319 | 156 | 6 | 1 | 290 | 80 | 389 | 3.73e-70 | 223 |
| MS.gene75204.t1 | AT4G30060 | 39.185 | 319 | 156 | 6 | 1 | 290 | 80 | 389 | 3.73e-70 | 223 |
| MS.gene75204.t1 | AT4G25870 | 40.645 | 310 | 159 | 5 | 6 | 292 | 75 | 382 | 6.65e-70 | 222 |
| MS.gene75204.t1 | AT2G19160 | 38.486 | 317 | 165 | 7 | 1 | 292 | 77 | 388 | 3.43e-69 | 221 |
| MS.gene75204.t1 | AT2G19160 | 38.486 | 317 | 165 | 7 | 1 | 292 | 77 | 388 | 3.43e-69 | 221 |
| MS.gene75204.t1 | AT5G57270 | 40.138 | 289 | 143 | 5 | 29 | 292 | 98 | 381 | 4.23e-65 | 210 |
| MS.gene75204.t1 | AT5G57270 | 40.138 | 289 | 143 | 5 | 29 | 292 | 98 | 381 | 4.23e-65 | 210 |
| MS.gene75204.t1 | AT5G57270 | 40.138 | 289 | 143 | 5 | 29 | 292 | 98 | 381 | 4.23e-65 | 210 |
| MS.gene75204.t1 | AT5G57270 | 40.138 | 289 | 143 | 5 | 29 | 292 | 98 | 381 | 4.23e-65 | 210 |
| MS.gene75204.t1 | AT5G57270 | 40.138 | 289 | 143 | 5 | 29 | 292 | 98 | 381 | 4.23e-65 | 210 |
| MS.gene75204.t1 | AT3G21310 | 58.537 | 164 | 68 | 0 | 2 | 165 | 88 | 251 | 5.40e-65 | 206 |
| MS.gene75204.t1 | AT5G25330 | 37.459 | 307 | 173 | 10 | 4 | 295 | 57 | 359 | 4.11e-53 | 178 |
| MS.gene75204.t1 | AT1G62305 | 36.634 | 303 | 144 | 9 | 28 | 288 | 68 | 364 | 1.34e-50 | 172 |
| MS.gene75204.t1 | AT3G52060 | 34.194 | 310 | 178 | 10 | 3 | 295 | 43 | 343 | 2.92e-50 | 170 |
| MS.gene75204.t1 | AT5G14550 | 35.161 | 310 | 152 | 8 | 24 | 289 | 60 | 364 | 1.31e-49 | 169 |
| MS.gene75204.t1 | AT5G14550 | 35.161 | 310 | 152 | 8 | 24 | 289 | 60 | 364 | 1.54e-49 | 169 |
| MS.gene75204.t1 | AT5G14550 | 37.308 | 260 | 141 | 6 | 24 | 264 | 60 | 316 | 1.12e-48 | 166 |
| MS.gene75204.t1 | AT1G11940 | 36.644 | 292 | 142 | 9 | 28 | 279 | 73 | 361 | 1.30e-48 | 167 |
| MS.gene75204.t1 | AT1G62305 | 41.629 | 221 | 102 | 6 | 19 | 217 | 60 | 275 | 1.20e-45 | 157 |
| MS.gene75204.t1 | AT1G11940 | 46.067 | 178 | 89 | 4 | 28 | 201 | 73 | 247 | 2.02e-42 | 147 |
| MS.gene75204.t1 | AT5G22070 | 32.934 | 334 | 167 | 14 | 3 | 295 | 42 | 359 | 2.48e-42 | 150 |
| MS.gene75204.t1 | AT5G14550 | 35.739 | 291 | 149 | 10 | 24 | 289 | 60 | 337 | 2.33e-41 | 147 |
| MS.gene75204.t1 | AT4G32290 | 37.282 | 287 | 157 | 9 | 29 | 295 | 93 | 376 | 3.45e-37 | 137 |
| MS.gene75204.t1 | AT1G62305 | 32.692 | 312 | 137 | 10 | 19 | 288 | 60 | 340 | 1.64e-36 | 134 |
Find 49 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGTAACTTATGTTTATT+AGG | 0.206271 | 1.1:+79142482 | None:intergenic |
| CATTCTAATCCTTCTTATAA+TGG | 0.257546 | 1.1:-79143855 | MS.gene75204:CDS |
| TCCTCCAATTATGCATGATA+TGG | 0.306477 | 1.1:-79144048 | None:intergenic |
| CTTTGGTTAGAATAAAGTTT+GGG | 0.319095 | 1.1:-79142751 | MS.gene75204:CDS |
| GTTTATTAAGTAAGAATAGA+TGG | 0.333539 | 1.1:+79143003 | None:intergenic |
| CTCTGTCCATTTCAAACCAT+TGG | 0.344014 | 1.1:+79142870 | None:intergenic |
| TTGGGGAAGGAAATTCAAAT+AGG | 0.374868 | 1.1:-79142733 | MS.gene75204:CDS |
| GGGAAACCTCGGGTAACATT+TGG | 0.376467 | 1.1:+79142915 | None:intergenic |
| TGACTTGGGTTGACTGGTCA+AGG | 0.394569 | 1.1:-79142706 | MS.gene75204:CDS |
| ACTTTGGTTAGAATAAAGTT+TGG | 0.400537 | 1.1:-79142752 | MS.gene75204:CDS |
| AAGAAATGCAAGTATAATAA+TGG | 0.408664 | 1.1:-79142614 | MS.gene75204:CDS |
| AACTTTATTCTAACCAAAGT+TGG | 0.411378 | 1.1:+79142755 | None:intergenic |
| GAAGTTGAAGAGTGGTATGC+AGG | 0.429293 | 1.1:+79143030 | None:intergenic |
| AGGGTCCCAATGGTTTGAAA+TGG | 0.440613 | 1.1:-79142876 | MS.gene75204:CDS |
| TCTGTCCATTTCAAACCATT+GGG | 0.442280 | 1.1:+79142871 | None:intergenic |
| TATAATGCAGGAAGTTGAAT+GGG | 0.448864 | 1.1:-79143143 | MS.gene75204:intron |
| AAGAGCTTTGACAAAGTACT+AGG | 0.449050 | 1.1:+79142548 | None:intergenic |
| GCTCTTGAAGATTGCGCCTA+AGG | 0.449626 | 1.1:-79142531 | MS.gene75204:CDS |
| TCCCTCAACGAATGGAGAAA+AGG | 0.452596 | 1.1:-79142896 | MS.gene75204:CDS |
| GGAGTTTGACTTGGGTTGAC+TGG | 0.465504 | 1.1:-79142712 | MS.gene75204:CDS |
| TGAACATTACTTGCCAACTT+TGG | 0.466371 | 1.1:-79142768 | MS.gene75204:CDS |
| GACTTGGGTTGACTGGTCAA+GGG | 0.470853 | 1.1:-79142705 | MS.gene75204:CDS |
| CTGATATGAGAACAAATCGT+TGG | 0.474721 | 1.1:+79143056 | None:intergenic |
| TGGATGATGAAGAATTGTTA+TGG | 0.474924 | 1.1:-79144028 | MS.gene75204:CDS |
| CCCTCAACGAATGGAGAAAA+GGG | 0.478730 | 1.1:-79142895 | MS.gene75204:CDS |
| CTATAATGCAGGAAGTTGAA+TGG | 0.492949 | 1.1:-79143144 | MS.gene75204:intron |
| CGACCACGACCGACCGAGCT+AGG | 0.504404 | 1.1:+79142947 | None:intergenic |
| TTCAAATAGGAGTTTGACTT+GGG | 0.504505 | 1.1:-79142720 | MS.gene75204:CDS |
| ATTCAAATAGGAGTTTGACT+TGG | 0.516231 | 1.1:-79142721 | MS.gene75204:CDS |
| TGTTCAAACTGCATAACCTT+AGG | 0.519351 | 1.1:+79142515 | None:intergenic |
| GATCCTAGCTCGGTCGGTCG+TGG | 0.528787 | 1.1:-79142950 | MS.gene75204:CDS |
| GTTAGAATAAAGTTTGGGGA+AGG | 0.530410 | 1.1:-79142746 | MS.gene75204:CDS |
| ACTTGGGTTGACTGGTCAAG+GGG | 0.535261 | 1.1:-79142704 | MS.gene75204:CDS |
| CCGAGGTTTCCCTCAACGAA+TGG | 0.536541 | 1.1:-79142904 | MS.gene75204:CDS |
| CGGTAGAAGAATTCCCAGTA+AGG | 0.536710 | 1.1:-79143805 | MS.gene75204:intron |
| GTCTTATGATGATCCTAGCT+CGG | 0.545878 | 1.1:-79142960 | MS.gene75204:CDS |
| TGCAGTTTGAACACTACGAC+AGG | 0.553841 | 1.1:-79142505 | MS.gene75204:CDS |
| TGGGTTGACTGGTCAAGGGG+TGG | 0.553874 | 1.1:-79142701 | MS.gene75204:CDS |
| AGCAAACAGAAAACATGCAT+TGG | 0.562151 | 1.1:+79142583 | None:intergenic |
| CCATTCGTTGAGGGAAACCT+CGG | 0.566873 | 1.1:+79142904 | None:intergenic |
| ATGGACAGAGAACTTGCTCT+AGG | 0.576538 | 1.1:-79142857 | MS.gene75204:CDS |
| GGGTGTGATCCATTATAAGA+AGG | 0.577180 | 1.1:+79143846 | None:intergenic |
| CATTCGTTGAGGGAAACCTC+GGG | 0.602596 | 1.1:+79142905 | None:intergenic |
| ATGGTTGAGAAGTTGAAGAG+TGG | 0.604831 | 1.1:+79143022 | None:intergenic |
| AATGGAGAAAAGGGTCCCAA+TGG | 0.634468 | 1.1:-79142886 | MS.gene75204:CDS |
| TTTGGTTAGAATAAAGTTTG+GGG | 0.642533 | 1.1:-79142750 | MS.gene75204:CDS |
| TAGCATCCAAATGTTACCCG+AGG | 0.647404 | 1.1:-79142921 | MS.gene75204:CDS |
| TATGATGATCCTAGCTCGGT+CGG | 0.674006 | 1.1:-79142956 | MS.gene75204:CDS |
| ATAATGCAGGAAGTTGAATG+GGG | 0.703755 | 1.1:-79143142 | MS.gene75204:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGTTACATTTTAATTTT+TGG | - | chr1.1:79142752-79142771 | MS.gene75204:CDS | 10.0% |
| !! | AAGAAATGCAAGTATAATAA+TGG | - | chr1.1:79143887-79143906 | MS.gene75204:CDS | 20.0% |
| !! | ATTGAAAAATGATTATTGCT+TGG | - | chr1.1:79142802-79142821 | MS.gene75204:CDS | 20.0% |
| !! | GATAGTAACTTATGTTTATT+AGG | + | chr1.1:79144022-79144041 | None:intergenic | 20.0% |
| !! | GTTTATTAAGTAAGAATAGA+TGG | + | chr1.1:79143501-79143520 | None:intergenic | 20.0% |
| !!! | ATTGTGAACTTTTAACAAAA+TGG | - | chr1.1:79143068-79143087 | MS.gene75204:CDS | 20.0% |
| !!! | TGATGTTAATGTTAAGTTTT+TGG | - | chr1.1:79143850-79143869 | MS.gene75204:CDS | 20.0% |
| ! | AACTTTATTCTAACCAAAGT+TGG | + | chr1.1:79143749-79143768 | None:intergenic | 25.0% |
| ! | ACTTTGGTTAGAATAAAGTT+TGG | - | chr1.1:79143749-79143768 | MS.gene75204:intron | 25.0% |
| ! | CATTCTAATCCTTCTTATAA+TGG | - | chr1.1:79142646-79142665 | MS.gene75204:CDS | 25.0% |
| ! | CTTTGGTTAGAATAAAGTTT+GGG | - | chr1.1:79143750-79143769 | MS.gene75204:intron | 25.0% |
| ! | TTGCAATATTCTTGAAAAAC+TGG | + | chr1.1:79143695-79143714 | None:intergenic | 25.0% |
| ! | TTGCTTGGATTTAATTCAAA+TGG | - | chr1.1:79142817-79142836 | MS.gene75204:CDS | 25.0% |
| ! | TTTGGTTAGAATAAAGTTTG+GGG | - | chr1.1:79143751-79143770 | MS.gene75204:intron | 25.0% |
| !! | AAAAACATGAATGCAACTTT+TGG | + | chr1.1:79142547-79142566 | None:intergenic | 25.0% |
| !! | CTTTTAACAAAATGGTACTA+TGG | - | chr1.1:79143076-79143095 | MS.gene75204:CDS | 25.0% |
| !!! | AAATAAACAGTGATGGATAT+TGG | - | chr1.1:79143321-79143340 | MS.gene75204:intron | 25.0% |
| !!! | GTTTTTCAAGAATATTGCAA+AGG | - | chr1.1:79143695-79143714 | MS.gene75204:intron | 25.0% |
| !!! | TTAAGTTTTTGGAGAGATTA+AGG | - | chr1.1:79143861-79143880 | MS.gene75204:CDS | 25.0% |
| !!! | TTTTAGCTAGAATGATGATA+TGG | - | chr1.1:79143014-79143033 | MS.gene75204:CDS | 25.0% |
| AAAAAACTAACTGACCTTAC+TGG | + | chr1.1:79142713-79142732 | None:intergenic | 30.0% | |
| AAAAACTAACTGACCTTACT+GGG | + | chr1.1:79142712-79142731 | None:intergenic | 30.0% | |
| AACAGAGAAATAAACAGTGA+TGG | - | chr1.1:79143314-79143333 | MS.gene75204:intron | 30.0% | |
| ATTCAAATAGGAGTTTGACT+TGG | - | chr1.1:79143780-79143799 | MS.gene75204:intron | 30.0% | |
| CAGATTAAGACAATAGAGAA+TGG | + | chr1.1:79142779-79142798 | None:intergenic | 30.0% | |
| TATAATGCAGGAAGTTGAAT+GGG | - | chr1.1:79143358-79143377 | MS.gene75204:intron | 30.0% | |
| TCTCTGTTGTAATAAGTTAC+TGG | + | chr1.1:79143302-79143321 | None:intergenic | 30.0% | |
| TGGATGATGAAGAATTGTTA+TGG | - | chr1.1:79142473-79142492 | MS.gene75204:CDS | 30.0% | |
| ! | ATATAACAAGACTTTTGCAC+AGG | + | chr1.1:79142862-79142881 | None:intergenic | 30.0% |
| ! | ATGCATACTTGTTTCTTTGT+AGG | - | chr1.1:79143260-79143279 | MS.gene75204:intron | 30.0% |
| ! | TTCAAATAGGAGTTTGACTT+GGG | - | chr1.1:79143781-79143800 | MS.gene75204:intron | 30.0% |
| !! | AGTTTTTCAAAGGTCATGAA+GGG | - | chr1.1:79142605-79142624 | MS.gene75204:CDS | 30.0% |
| !! | TGCATTCATGTTTTTGACAA+GGG | - | chr1.1:79142552-79142571 | MS.gene75204:CDS | 30.0% |
| !! | TTGCATTCATGTTTTTGACA+AGG | - | chr1.1:79142551-79142570 | MS.gene75204:CDS | 30.0% |
| AACTAACCCTTCTATAATGC+AGG | - | chr1.1:79143346-79143365 | MS.gene75204:intron | 35.0% | |
| AAGCCAAGTGAAGAGTAAAA+TGG | - | chr1.1:79142925-79142944 | MS.gene75204:CDS | 35.0% | |
| AGCAAACAGAAAACATGCAT+TGG | + | chr1.1:79143921-79143940 | None:intergenic | 35.0% | |
| AGCCAAGTGAAGAGTAAAAT+GGG | - | chr1.1:79142926-79142945 | MS.gene75204:CDS | 35.0% | |
| ATAATGCAGGAAGTTGAATG+GGG | - | chr1.1:79143359-79143378 | MS.gene75204:intron | 35.0% | |
| ATTCTTCTACCGTGAAAAAC+AGG | + | chr1.1:79142688-79142707 | None:intergenic | 35.0% | |
| CAAAATTGTCCAGTCAAACA+AGG | - | chr1.1:79143200-79143219 | MS.gene75204:intron | 35.0% | |
| CAACTTCCTGCATTATAGAA+GGG | + | chr1.1:79143355-79143374 | None:intergenic | 35.0% | |
| CTATAATGCAGGAAGTTGAA+TGG | - | chr1.1:79143357-79143376 | MS.gene75204:intron | 35.0% | |
| CTGATATGAGAACAAATCGT+TGG | + | chr1.1:79143448-79143467 | None:intergenic | 35.0% | |
| GTTAGAATAAAGTTTGGGGA+AGG | - | chr1.1:79143755-79143774 | MS.gene75204:intron | 35.0% | |
| TCAACTTCCTGCATTATAGA+AGG | + | chr1.1:79143356-79143375 | None:intergenic | 35.0% | |
| TCAGATCTCAAAAAATGAGC+TGG | + | chr1.1:79143833-79143852 | None:intergenic | 35.0% | |
| TCTGTCCATTTCAAACCATT+GGG | + | chr1.1:79143633-79143652 | None:intergenic | 35.0% | |
| TGAACATTACTTGCCAACTT+TGG | - | chr1.1:79143733-79143752 | MS.gene75204:intron | 35.0% | |
| TGTTCAAACTGCATAACCTT+AGG | + | chr1.1:79143989-79144008 | None:intergenic | 35.0% | |
| TTGAAAAACTGTTCCCACAA+AGG | + | chr1.1:79142595-79142614 | None:intergenic | 35.0% | |
| TTGGGGAAGGAAATTCAAAT+AGG | - | chr1.1:79143768-79143787 | MS.gene75204:intron | 35.0% | |
| ! | AAGAGCTTTGACAAAGTACT+AGG | + | chr1.1:79143956-79143975 | None:intergenic | 35.0% |
| ! | ACTTTAAGTCCTTGTTTGAC+TGG | + | chr1.1:79143212-79143231 | None:intergenic | 35.0% |
| ! | ATGCATGTTTTCTGTTTGCT+AGG | - | chr1.1:79143921-79143940 | MS.gene75204:CDS | 35.0% |
| !! | CAGTTTTTCAAAGGTCATGA+AGG | - | chr1.1:79142604-79142623 | MS.gene75204:CDS | 35.0% |
| !! | GCATTCATGTTTTTGACAAG+GGG | - | chr1.1:79142553-79142572 | MS.gene75204:CDS | 35.0% |
| !! | TTGTGGGAACAGTTTTTCAA+AGG | - | chr1.1:79142595-79142614 | MS.gene75204:CDS | 35.0% |
| !!! | ACTTTTGGAACTCGTTCAAA+AGG | + | chr1.1:79142532-79142551 | None:intergenic | 35.0% |
| !!! | CTTTTGGAACTCGTTCAAAA+GGG | + | chr1.1:79142531-79142550 | None:intergenic | 35.0% |
| ATGGTTGAGAAGTTGAAGAG+TGG | + | chr1.1:79143482-79143501 | None:intergenic | 40.0% | |
| CTCAAAAAATGAGCTGGATG+TGG | + | chr1.1:79143827-79143846 | None:intergenic | 40.0% | |
| CTCTGTCCATTTCAAACCAT+TGG | + | chr1.1:79143634-79143653 | None:intergenic | 40.0% | |
| GCCAAGTGAAGAGTAAAATG+GGG | - | chr1.1:79142927-79142946 | MS.gene75204:CDS | 40.0% | |
| GGGTGTGATCCATTATAAGA+AGG | + | chr1.1:79142658-79142677 | None:intergenic | 40.0% | |
| GTCTTATGATGATCCTAGCT+CGG | - | chr1.1:79143541-79143560 | MS.gene75204:intron | 40.0% | |
| GTGAAGAGTAAAATGGGGAA+AGG | - | chr1.1:79142932-79142951 | MS.gene75204:CDS | 40.0% | |
| ! | TCCCCATTTTACTCTTCACT+TGG | + | chr1.1:79142931-79142950 | None:intergenic | 40.0% |
| !!! | TGTGTTTTTGGCACCTTTGT+GGG | - | chr1.1:79142579-79142598 | MS.gene75204:CDS | 40.0% |
| AATGGAGAAAAGGGTCCCAA+TGG | - | chr1.1:79143615-79143634 | MS.gene75204:intron | 45.0% | |
| AGGGTCCCAATGGTTTGAAA+TGG | - | chr1.1:79143625-79143644 | MS.gene75204:intron | 45.0% | |
| CCCTCAACGAATGGAGAAAA+GGG | - | chr1.1:79143606-79143625 | MS.gene75204:intron | 45.0% | |
| CGGTAGAAGAATTCCCAGTA+AGG | - | chr1.1:79142696-79142715 | MS.gene75204:CDS | 45.0% | |
| CGTGAAAAACAGGACTCTCA+GGG | + | chr1.1:79142678-79142697 | None:intergenic | 45.0% | |
| GAAGTTGAAGAGTGGTATGC+AGG | + | chr1.1:79143474-79143493 | None:intergenic | 45.0% | |
| TAGCATCCAAATGTTACCCG+AGG | - | chr1.1:79143580-79143599 | MS.gene75204:intron | 45.0% | |
| TATGATGATCCTAGCTCGGT+CGG | - | chr1.1:79143545-79143564 | MS.gene75204:intron | 45.0% | |
| TCCCTCAACGAATGGAGAAA+AGG | - | chr1.1:79143605-79143624 | MS.gene75204:intron | 45.0% | |
| TGCAGTTTGAACACTACGAC+AGG | - | chr1.1:79143996-79144015 | MS.gene75204:CDS | 45.0% | |
| ! | ACCCTTTTCTCCATTCGTTG+AGG | + | chr1.1:79143610-79143629 | None:intergenic | 45.0% |
| ! | ATGGACAGAGAACTTGCTCT+AGG | - | chr1.1:79143644-79143663 | MS.gene75204:intron | 45.0% |
| ! | CCCTTTTCTCCATTCGTTGA+GGG | + | chr1.1:79143609-79143628 | None:intergenic | 45.0% |
| !! | CCTGAGAGTCCTGTTTTTCA+CGG | - | chr1.1:79142676-79142695 | MS.gene75204:CDS | 45.0% |
| !!! | CTGTGTTTTTGGCACCTTTG+TGG | - | chr1.1:79142578-79142597 | MS.gene75204:CDS | 45.0% |
| CATTCGTTGAGGGAAACCTC+GGG | + | chr1.1:79143599-79143618 | None:intergenic | 50.0% | |
| CCATTCGTTGAGGGAAACCT+CGG | + | chr1.1:79143600-79143619 | None:intergenic | 50.0% | |
| CCGTGAAAAACAGGACTCTC+AGG | + | chr1.1:79142679-79142698 | None:intergenic | 50.0% | |
| GCTCTTGAAGATTGCGCCTA+AGG | - | chr1.1:79143970-79143989 | MS.gene75204:CDS | 50.0% | |
| GGGAAACCTCGGGTAACATT+TGG | + | chr1.1:79143589-79143608 | None:intergenic | 50.0% | |
| !! | ACTTGGGTTGACTGGTCAAG+GGG | - | chr1.1:79143797-79143816 | MS.gene75204:intron | 50.0% |
| !! | GACTTGGGTTGACTGGTCAA+GGG | - | chr1.1:79143796-79143815 | MS.gene75204:intron | 50.0% |
| !! | GGAGTTTGACTTGGGTTGAC+TGG | - | chr1.1:79143789-79143808 | MS.gene75204:intron | 50.0% |
| !! | TGACTTGGGTTGACTGGTCA+AGG | - | chr1.1:79143795-79143814 | MS.gene75204:intron | 50.0% |
| !!! | GACAAGGGGTGCTGTGTTTT+TGG | - | chr1.1:79142567-79142586 | MS.gene75204:CDS | 50.0% |
| CCGAGGTTTCCCTCAACGAA+TGG | - | chr1.1:79143597-79143616 | MS.gene75204:intron | 55.0% | |
| ! | TGGGTTGACTGGTCAAGGGG+TGG | - | chr1.1:79143800-79143819 | MS.gene75204:intron | 60.0% |
| GATCCTAGCTCGGTCGGTCG+TGG | - | chr1.1:79143551-79143570 | MS.gene75204:intron | 65.0% | |
| CGACCACGACCGACCGAGCT+AGG | + | chr1.1:79143557-79143576 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 79142463 | 79144060 | 79142463 | ID=MS.gene75204 |
| chr1.1 | mRNA | 79142463 | 79144060 | 79142463 | ID=MS.gene75204.t1;Parent=MS.gene75204 |
| chr1.1 | exon | 79143806 | 79144060 | 79143806 | ID=MS.gene75204.t1.exon1;Parent=MS.gene75204.t1 |
| chr1.1 | CDS | 79143806 | 79144060 | 79143806 | ID=cds.MS.gene75204.t1;Parent=MS.gene75204.t1 |
| chr1.1 | exon | 79142463 | 79143155 | 79142463 | ID=MS.gene75204.t1.exon2;Parent=MS.gene75204.t1 |
| chr1.1 | CDS | 79142463 | 79143155 | 79142463 | ID=cds.MS.gene75204.t1;Parent=MS.gene75204.t1 |
| Gene Sequence |
| Protein sequence |
