Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75311.t1 | GAU14498.1 | 71.2 | 1200 | 301 | 6 | 1 | 1193 | 8 | 1170 | 0.00E+00 | 1437.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75311.t1 | Q56YN8 | 56.2 | 1199 | 515 | 2 | 1 | 1192 | 1 | 1196 | 0.0e+00 | 1179.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75311.t1 | A0A2K3NM53 | 68.3 | 1249 | 303 | 6 | 1 | 1193 | 8 | 1219 | 0.0e+00 | 1409.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95250 | MS.gene75311 | PPI |
| MS.gene058789 | MS.gene75311 | PPI |
| MS.gene056169 | MS.gene75311 | PPI |
| MS.gene45748 | MS.gene75311 | PPI |
| MS.gene036083 | MS.gene75311 | PPI |
| MS.gene033508 | MS.gene75311 | PPI |
| MS.gene024068 | MS.gene75311 | PPI |
| MS.gene016667 | MS.gene75311 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75311.t1 | MTR_1g051825 | 78.333 | 1200 | 249 | 2 | 1 | 1193 | 1 | 1196 | 0.0 | 1838 |
| MS.gene75311.t1 | MTR_1g051825 | 78.500 | 1200 | 247 | 2 | 1 | 1193 | 25 | 1220 | 0.0 | 1837 |
| MS.gene75311.t1 | MTR_3g110058 | 80.000 | 580 | 60 | 6 | 122 | 698 | 1 | 527 | 0.0 | 874 |
| MS.gene75311.t1 | MTR_3g110055 | 89.648 | 454 | 35 | 3 | 697 | 1140 | 3 | 454 | 0.0 | 745 |
| MS.gene75311.t1 | MTR_8g037325 | 25.199 | 1254 | 776 | 44 | 1 | 1180 | 1 | 1166 | 5.26e-59 | 223 |
| MS.gene75311.t1 | MTR_5g086975 | 43.772 | 281 | 81 | 6 | 242 | 519 | 59 | 265 | 2.98e-48 | 174 |
| MS.gene75311.t1 | MTR_5g087290 | 50.459 | 109 | 50 | 2 | 427 | 531 | 1 | 109 | 2.90e-23 | 96.7 |
| MS.gene75311.t1 | MTR_0003s0460 | 23.315 | 712 | 392 | 27 | 523 | 1148 | 509 | 1152 | 3.73e-20 | 97.8 |
| MS.gene75311.t1 | MTR_1g069910 | 22.446 | 695 | 418 | 22 | 523 | 1148 | 518 | 1160 | 4.32e-20 | 97.4 |
| MS.gene75311.t1 | MTR_7g091420 | 25.153 | 326 | 191 | 8 | 1 | 293 | 9 | 314 | 1.73e-12 | 71.2 |
| MS.gene75311.t1 | MTR_8g072890 | 27.568 | 185 | 99 | 6 | 1009 | 1192 | 1077 | 1227 | 1.78e-11 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75311.t1 | AT2G27170 | 62.969 | 1199 | 434 | 2 | 1 | 1192 | 1 | 1196 | 0.0 | 1458 |
| MS.gene75311.t1 | AT2G27170 | 62.969 | 1199 | 434 | 2 | 1 | 1192 | 1 | 1196 | 0.0 | 1458 |
| MS.gene75311.t1 | AT2G27170 | 61.180 | 1051 | 401 | 1 | 1 | 1044 | 1 | 1051 | 0.0 | 1252 |
| MS.gene75311.t1 | AT2G27170 | 61.180 | 1051 | 401 | 1 | 1 | 1044 | 1 | 1051 | 0.0 | 1252 |
| MS.gene75311.t1 | AT5G62410 | 24.686 | 1272 | 760 | 46 | 1 | 1180 | 1 | 1166 | 4.04e-57 | 216 |
| MS.gene75311.t1 | AT3G47460 | 24.080 | 1250 | 795 | 42 | 1 | 1180 | 1 | 1166 | 4.25e-55 | 210 |
| MS.gene75311.t1 | AT3G47460 | 23.978 | 1247 | 797 | 43 | 1 | 1180 | 1 | 1163 | 7.83e-55 | 209 |
| MS.gene75311.t1 | AT3G54670 | 23.386 | 697 | 398 | 22 | 523 | 1142 | 519 | 1156 | 3.63e-19 | 94.7 |
| MS.gene75311.t1 | AT5G48600 | 23.278 | 726 | 446 | 25 | 509 | 1171 | 542 | 1219 | 7.78e-18 | 90.1 |
| MS.gene75311.t1 | AT5G48600 | 23.288 | 730 | 438 | 26 | 509 | 1171 | 542 | 1216 | 2.15e-17 | 89.0 |
Find 193 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCAGTTCCTTTATATTTC+TGG | 0.089401 | 3.3:+90340740 | None:intergenic |
| TCTTTAAAGTCTTTGATTTC+AGG | 0.122805 | 3.3:+90341385 | None:intergenic |
| ATGCGACTTTGCTGATATTT+TGG | 0.146630 | 3.3:+90347454 | None:intergenic |
| CCTTGTTGTACCACATAATA+TGG | 0.195263 | 3.3:+90348823 | None:intergenic |
| TCAAAAGCATCTGATGTTAA+TGG | 0.235257 | 3.3:+90340717 | None:intergenic |
| TGTTATATTATAGGTCCTTA+TGG | 0.237442 | 3.3:-90344881 | MS.gene75311:intron |
| TGCAAAAGTCACAACATTTC+TGG | 0.238657 | 3.3:-90344453 | MS.gene75311:CDS |
| CAAACTATTCTCCAAATCTT+TGG | 0.239758 | 3.3:+90347403 | None:intergenic |
| AATCTCGTCGAATAGATAAA+AGG | 0.248777 | 3.3:+90336215 | None:intergenic |
| TAACAAGTTCATTAATCTTT+TGG | 0.253995 | 3.3:+90341783 | None:intergenic |
| TAAGCTGTTCAATATGATTC+TGG | 0.266756 | 3.3:+90341500 | None:intergenic |
| CCGGACAATTAGTTTGAAAA+AGG | 0.272557 | 3.3:-90349068 | MS.gene75311:CDS |
| AAACATCTTAATCAAGAAAA+TGG | 0.288851 | 3.3:-90344095 | MS.gene75311:CDS |
| CTTACGGCTATAATTGATAA+AGG | 0.290503 | 3.3:-90344843 | MS.gene75311:CDS |
| TTACCAACACAATTAACTTT+AGG | 0.294506 | 3.3:+90351486 | None:intergenic |
| TGAAAGTTTCAAAATAATTC+AGG | 0.295912 | 3.3:-90348600 | MS.gene75311:CDS |
| TTGAACTGCTTTGTCCAATA+TGG | 0.296916 | 3.3:+90348344 | None:intergenic |
| TGTTGGTTCGATTAATTATA+CGG | 0.297915 | 3.3:+90340974 | None:intergenic |
| TTGGATTTACTGAAGGAAAT+AGG | 0.299353 | 3.3:-90348653 | MS.gene75311:CDS |
| TATTTCTATTAGGTATTTGC+TGG | 0.306897 | 3.3:-90342671 | MS.gene75311:intron |
| ACTTAGTGATGCTAAAATAT+TGG | 0.326441 | 3.3:-90341119 | MS.gene75311:CDS |
| TACTTGTCTACTCTCCCCTT+TGG | 0.332047 | 3.3:+90336978 | None:intergenic |
| TGAACTTGACCATCATATAA+AGG | 0.332080 | 3.3:+90347073 | None:intergenic |
| GTCATTGGAATATGCCATAT+TGG | 0.347738 | 3.3:-90348358 | MS.gene75311:CDS |
| TACCAGAAATATAAAGGAAC+TGG | 0.355141 | 3.3:-90340742 | MS.gene75311:CDS |
| AAAGTTGCCAACAAGATATA+TGG | 0.355228 | 3.3:-90335626 | MS.gene75311:CDS |
| AATTAGCAATGTCCTGCTTA+AGG | 0.360727 | 3.3:+90341705 | None:intergenic |
| TTCAAAAGCACTTGCAAAGA+AGG | 0.362510 | 3.3:-90341660 | MS.gene75311:intron |
| CTTTAAAGTCTTTGATTTCA+GGG | 0.364500 | 3.3:+90341386 | None:intergenic |
| TCACATTAAAGAGGGAGAAT+TGG | 0.365516 | 3.3:-90342384 | MS.gene75311:CDS |
| CAGTTCAGCAACTCAATAAC+TGG | 0.365890 | 3.3:+90344420 | None:intergenic |
| TTCAAAATAATTCAGGATAC+AGG | 0.370538 | 3.3:-90348593 | MS.gene75311:intron |
| GGTGATCAAGTAAGCAATAA+TGG | 0.372586 | 3.3:-90342488 | MS.gene75311:CDS |
| TTCCTTCATCTGCCAGGCGC+TGG | 0.377376 | 3.3:+90335690 | None:intergenic |
| AGAATATACCAGAAATATAA+AGG | 0.382207 | 3.3:-90340748 | MS.gene75311:CDS |
| AGACAAGCTGAACTTGTTGT+TGG | 0.382589 | 3.3:-90340225 | MS.gene75311:CDS |
| AATCTTCATCGTGCAATTCC+TGG | 0.385457 | 3.3:-90344792 | MS.gene75311:CDS |
| CACAACATTTCTGGTGTTCA+TGG | 0.386691 | 3.3:-90344444 | MS.gene75311:CDS |
| ATCTGTTGATGCCGACTCTA+TGG | 0.390053 | 3.3:-90341170 | MS.gene75311:CDS |
| TTGGCAACTTTCACTATCTC+TGG | 0.393458 | 3.3:+90335638 | None:intergenic |
| ATTATGAATTGTTAGAATCA+TGG | 0.402791 | 3.3:-90346776 | MS.gene75311:intron |
| AACTGAAGTGATGAGTTTAC+TGG | 0.402941 | 3.3:-90348872 | MS.gene75311:CDS |
| AAATTCAATTTATGTATAAG+AGG | 0.407339 | 3.3:+90343996 | None:intergenic |
| CAAAAGCATCTGATGTTAAT+GGG | 0.408358 | 3.3:+90340718 | None:intergenic |
| AACAGTTATCTGCAAGGATC+TGG | 0.409731 | 3.3:-90342648 | MS.gene75311:CDS |
| GGAAGAAGCTAAAGAATTAG+AGG | 0.409833 | 3.3:-90340811 | MS.gene75311:CDS |
| TAGAACAAATATTACTACTT+TGG | 0.411070 | 3.3:-90345120 | MS.gene75311:CDS |
| GTATTCTCTGAGCTTGTAAA+GGG | 0.416245 | 3.3:-90339709 | MS.gene75311:CDS |
| TTGAAATGACTGCAGGAATC+AGG | 0.423161 | 3.3:-90344374 | MS.gene75311:intron |
| CTCTGTGGATAAGTGACGTT+GGG | 0.423794 | 3.3:+90344032 | None:intergenic |
| TTCATTCTCTTGAGTCCATA+AGG | 0.424347 | 3.3:+90344866 | None:intergenic |
| TGACAAGCAAAGAAAGTCAT+TGG | 0.429212 | 3.3:-90348373 | MS.gene75311:CDS |
| CTTCAGTAAATCCAATCGTT+CGG | 0.431227 | 3.3:+90348661 | None:intergenic |
| TAAAGAATTAGAGGAATTGC+TGG | 0.432513 | 3.3:-90340802 | MS.gene75311:CDS |
| AATGAGCATGAAGCAGTTAT+CGG | 0.433715 | 3.3:-90336301 | MS.gene75311:CDS |
| CGGAGCTGGAGACTAATCTA+AGG | 0.434020 | 3.3:-90341237 | MS.gene75311:CDS |
| GCAGTTGGTGCTAATGGATC+TGG | 0.438920 | 3.3:-90350978 | MS.gene75311:intron |
| ATGAGCATGAAGCAGTTATC+GGG | 0.439002 | 3.3:-90336300 | MS.gene75311:CDS |
| GAATCATATTGAACAGCTTA+AGG | 0.440247 | 3.3:-90341497 | MS.gene75311:CDS |
| GGAAGATGCCACAAAACAAC+TGG | 0.443839 | 3.3:-90347149 | MS.gene75311:CDS |
| ATTAAGATGTTTAATTATCT+CGG | 0.446151 | 3.3:+90344106 | None:intergenic |
| AAAATCATTCCTTTATATGA+TGG | 0.448707 | 3.3:-90347082 | MS.gene75311:CDS |
| CAGCCGTGTTAATGTTATAT+CGG | 0.456177 | 3.3:-90335582 | MS.gene75311:CDS |
| TATATATCTTCAGACTTTGG+AGG | 0.459965 | 3.3:-90340856 | MS.gene75311:intron |
| TGTCACTCCATATATCTTGT+TGG | 0.462166 | 3.3:+90335619 | None:intergenic |
| GACTTACAAGAGAAGATCTC+TGG | 0.464467 | 3.3:-90347272 | MS.gene75311:CDS |
| AAACTAACCTTTCTGAATGC+TGG | 0.464844 | 3.3:+90343957 | None:intergenic |
| ACGTGAGAAATCCAAAGATT+TGG | 0.465110 | 3.3:-90347414 | MS.gene75311:CDS |
| ATCTCGTCGAATAGATAAAA+GGG | 0.470398 | 3.3:+90336216 | None:intergenic |
| GGAGTATGAGAGAAAACATC+AGG | 0.470861 | 3.3:-90340832 | MS.gene75311:CDS |
| GTAAAGCTGCGCGTGATAAG+TGG | 0.474211 | 3.3:-90346693 | MS.gene75311:CDS |
| AGACGAAATGAATAAATTGA+AGG | 0.475995 | 3.3:-90340935 | MS.gene75311:intron |
| TGATATTCTCATCACGGCCA+TGG | 0.476690 | 3.3:+90345150 | None:intergenic |
| CATAGAAATGATCCAGCGCC+TGG | 0.482129 | 3.3:-90335702 | MS.gene75311:intron |
| TCAAGATGAGGGTGGTCATC+GGG | 0.482579 | 3.3:-90337009 | MS.gene75311:CDS |
| AGTCCTAAAGTTAATTGTGT+TGG | 0.482751 | 3.3:-90351489 | MS.gene75311:intron |
| TGTTATGATAAGGAAGAAGA+AGG | 0.486418 | 3.3:-90339671 | MS.gene75311:intron |
| AGTATTCTCTGAGCTTGTAA+AGG | 0.490912 | 3.3:-90339710 | MS.gene75311:CDS |
| TTTCAACATGTACATTAAGA+AGG | 0.494420 | 3.3:-90351673 | None:intergenic |
| AGCAATAATGGTACTATGAC+CGG | 0.495498 | 3.3:-90342476 | MS.gene75311:CDS |
| GACTCAAGAGAATGAACTTA+CGG | 0.495574 | 3.3:-90344859 | MS.gene75311:CDS |
| TCAAAGGTAGCTCGCACAAA+TGG | 0.495653 | 3.3:-90342617 | MS.gene75311:CDS |
| TTACGGCTATAATTGATAAA+GGG | 0.496498 | 3.3:-90344842 | MS.gene75311:CDS |
| TGATAGGAAAAGAGATGAGA+TGG | 0.497935 | 3.3:-90341467 | MS.gene75311:CDS |
| GGAGATTGATGATCTTGAAC+GGG | 0.498144 | 3.3:-90346662 | MS.gene75311:CDS |
| AGGGAAAGTAGAACTTGAAA+AGG | 0.502341 | 3.3:-90344823 | MS.gene75311:CDS |
| AAGTAGTAATATTTGTTCTA+CGG | 0.504251 | 3.3:+90345123 | None:intergenic |
| ACAGGAAGGGGCTGGACACC+AGG | 0.505153 | 3.3:-90350666 | MS.gene75311:intron |
| CATCTAAATTCTGTACAACT+TGG | 0.506273 | 3.3:+90348451 | None:intergenic |
| GGATCTGGATGTGGCTTCAA+AGG | 0.509761 | 3.3:-90342633 | MS.gene75311:CDS |
| ATCCAGCGCCTGGCAGATGA+AGG | 0.510379 | 3.3:-90335692 | MS.gene75311:CDS |
| GAGTGTTTCCTTCATCTGCC+AGG | 0.513433 | 3.3:+90335684 | None:intergenic |
| AGCTTAAGGCTAGCATTGAT+AGG | 0.514715 | 3.3:-90341483 | MS.gene75311:CDS |
| GAATGAAATTCAAGTCTCAA+TGG | 0.516823 | 3.3:-90347116 | MS.gene75311:CDS |
| TGAACTTGTTGTTGGAGAGA+AGG | 0.517263 | 3.3:-90340217 | MS.gene75311:intron |
| GGAACTAGATGAGGAGAAAG+AGG | 0.518630 | 3.3:-90348418 | MS.gene75311:CDS |
| ATATCTTCAGACTTTGGAGG+AGG | 0.524528 | 3.3:-90340853 | MS.gene75311:intron |
| GAAGAGGGTTGAATTCAGTT+CGG | 0.524749 | 3.3:-90344482 | MS.gene75311:CDS |
| GAATTTAGATGAGAGGTTGA+AGG | 0.524848 | 3.3:-90348439 | MS.gene75311:CDS |
| TTCTCTTTACAGGAAGGGGC+TGG | 0.525303 | 3.3:-90350674 | MS.gene75311:intron |
| AGGCGGTACTAGAACTTATG+AGG | 0.526414 | 3.3:-90348633 | MS.gene75311:CDS |
| GAGGTTGAAGGAACTAGATG+AGG | 0.527170 | 3.3:-90348427 | MS.gene75311:CDS |
| ATGTGCAGGGAATTAGAAGA+GGG | 0.527193 | 3.3:-90344497 | MS.gene75311:intron |
| ATGAGTTTACTGGAAAGTGC+TGG | 0.527499 | 3.3:-90348862 | MS.gene75311:CDS |
| ATCAAGATGAGGGTGGTCAT+CGG | 0.528295 | 3.3:-90337010 | MS.gene75311:CDS |
| CAAGAGAAGAAAACAAGACC+TGG | 0.528769 | 3.3:-90341206 | MS.gene75311:CDS |
| CGGCTTAATAATGAAATCCA+TGG | 0.529511 | 3.3:-90345167 | MS.gene75311:CDS |
| GCCGCAGTTGAAATGACTGC+AGG | 0.529614 | 3.3:-90344381 | MS.gene75311:CDS |
| ATGCTGATCTTGTTATGATA+AGG | 0.532275 | 3.3:-90339681 | MS.gene75311:CDS |
| GCGTGATAAGTGGCTTCAAA+AGG | 0.534894 | 3.3:-90346683 | MS.gene75311:CDS |
| CCTCCGTGTCAAATTTCTCT+CGG | 0.537002 | 3.3:+90351517 | None:intergenic |
| AGTATACTTTATCAAAAGCA+AGG | 0.537651 | 3.3:-90346736 | MS.gene75311:CDS |
| ATTAGAGCCTTTACGTAACA+TGG | 0.538375 | 3.3:+90345085 | None:intergenic |
| GCTCTCTTCAATCACAATGC+AGG | 0.539220 | 3.3:-90346638 | MS.gene75311:intron |
| TCAATAGAACGAACTTTCAA+AGG | 0.542211 | 3.3:-90339754 | MS.gene75311:CDS |
| TAATGTAAATAACCTTTGCA+AGG | 0.543394 | 3.3:+90348307 | None:intergenic |
| TTCAGAATAATACTTTGGCA+TGG | 0.549840 | 3.3:+90347243 | None:intergenic |
| GGAGCACGTACTCTGTTAAG+TGG | 0.554715 | 3.3:+90344053 | None:intergenic |
| ACAGAGTACAGAACTGCTGT+TGG | 0.555864 | 3.3:-90336177 | MS.gene75311:CDS |
| ACTTGTTACTGAGAAGCAAA+AGG | 0.556940 | 3.3:-90341768 | MS.gene75311:CDS |
| CCATATTATGTGGTACAACA+AGG | 0.557632 | 3.3:-90348823 | MS.gene75311:CDS |
| GATGAGGAGAAAGAGGAGCT+TGG | 0.560300 | 3.3:-90348411 | MS.gene75311:CDS |
| CAGACTGCCATGTTACGTAA+AGG | 0.560667 | 3.3:-90345092 | MS.gene75311:CDS |
| CGAACGATTGGATTTACTGA+AGG | 0.563018 | 3.3:-90348660 | MS.gene75311:CDS |
| CCACAAACGCAGATAAAACC+TGG | 0.567824 | 3.3:+90350648 | None:intergenic |
| AGGAGATTGATGATCTTGAA+CGG | 0.567922 | 3.3:-90346663 | MS.gene75311:CDS |
| TGATAGTATTCACATTAAAG+AGG | 0.569460 | 3.3:-90342393 | MS.gene75311:CDS |
| TTGCAAGAATGATCGCATTG+AGG | 0.569879 | 3.3:-90341350 | MS.gene75311:intron |
| GATAGTATTCACATTAAAGA+GGG | 0.571526 | 3.3:-90342392 | MS.gene75311:CDS |
| TTGTACAGAATTTAGATGAG+AGG | 0.575694 | 3.3:-90348446 | MS.gene75311:CDS |
| TCGCTCAAATCCATATTATG+TGG | 0.577789 | 3.3:-90348833 | MS.gene75311:CDS |
| TGCTGGAACAGTTATCTGCA+AGG | 0.579232 | 3.3:-90342654 | MS.gene75311:CDS |
| TCGAATAGATAAAAGGGAGC+CGG | 0.581732 | 3.3:+90336222 | None:intergenic |
| TATCTGCAAGGATCTGGATG+TGG | 0.582327 | 3.3:-90342642 | MS.gene75311:CDS |
| TGTGGGTGAATAGGTTGACA+AGG | 0.582456 | 3.3:-90349107 | MS.gene75311:intron |
| GGGAGAGTAGACAAGTACAT+TGG | 0.586081 | 3.3:-90336972 | MS.gene75311:CDS |
| AGTGATCTCTTTCAGAAGCT+AGG | 0.587485 | 3.3:-90350791 | MS.gene75311:CDS |
| ATCACTCAGCACAAAACGAA+TGG | 0.587565 | 3.3:+90350808 | None:intergenic |
| TAATTCAGACAATCGTATAC+CGG | 0.588509 | 3.3:-90350612 | MS.gene75311:intron |
| CAGATGATATCACAGCCTCC+AGG | 0.588780 | 3.3:+90341188 | None:intergenic |
| GATAGGAAAAGAGATGAGAT+GGG | 0.590941 | 3.3:-90341466 | MS.gene75311:CDS |
| CATCGGGAAGCAAATCCAAA+GGG | 0.592389 | 3.3:-90336993 | MS.gene75311:CDS |
| ATCTGATGGAAGAAATTGCA+CGG | 0.594132 | 3.3:-90345187 | MS.gene75311:CDS |
| TGAGTTTACTGGAAAGTGCT+GGG | 0.599963 | 3.3:-90348861 | MS.gene75311:CDS |
| TTATGTGGTACAACAAGGAA+AGG | 0.600132 | 3.3:-90348818 | MS.gene75311:intron |
| TGCTAAGCAAAACCTTGCAA+AGG | 0.600138 | 3.3:-90348319 | MS.gene75311:intron |
| ACCAGAAATATAAAGGAACT+GGG | 0.604212 | 3.3:-90340741 | MS.gene75311:CDS |
| CATCTTAATCAAGAAAATGG+TGG | 0.609588 | 3.3:-90344092 | MS.gene75311:CDS |
| GGGTGAATAGGTTGACAAGG+AGG | 0.611090 | 3.3:-90349104 | MS.gene75311:intron |
| ACAGATAGAAGACCTTAAGC+AGG | 0.613543 | 3.3:-90341717 | MS.gene75311:CDS |
| GTATGGCAAAGATAAGTGCA+AGG | 0.614101 | 3.3:+90336256 | None:intergenic |
| GATAGAAGAGTATCGGACCA+AGG | 0.614259 | 3.3:-90347480 | MS.gene75311:CDS |
| CTATACTCCAGCATTCAGAA+AGG | 0.615466 | 3.3:-90343964 | MS.gene75311:intron |
| TCCTGCAGTCATTTCAACTG+CGG | 0.615852 | 3.3:+90344380 | None:intergenic |
| CAACTTTCACTATCTCTGGA+CGG | 0.617179 | 3.3:+90335642 | None:intergenic |
| GGCTCTTGATATTCTCATCA+CGG | 0.617290 | 3.3:+90345144 | None:intergenic |
| ATTCTCTGAGCTTGTAAAGG+GGG | 0.617970 | 3.3:-90339707 | MS.gene75311:CDS |
| ACTGAGAAGCAAAAGGTCGA+TGG | 0.620120 | 3.3:-90341761 | MS.gene75311:CDS |
| TGATGAGGATGATCAAGATG+AGG | 0.622978 | 3.3:-90337021 | MS.gene75311:CDS |
| GTATACTTTATCAAAAGCAA+GGG | 0.623964 | 3.3:-90346735 | MS.gene75311:CDS |
| TGATGCTGTATTGAAGAGGC+AGG | 0.624296 | 3.3:-90341143 | MS.gene75311:CDS |
| AGCATCAACAACCATAGAGT+CGG | 0.624626 | 3.3:+90341159 | None:intergenic |
| ATGTATAAGAGGCGTGACAT+CGG | 0.625735 | 3.3:+90344007 | None:intergenic |
| TTGAACTGCATAACACCGGA+AGG | 0.630360 | 3.3:-90342593 | MS.gene75311:intron |
| TATGTGCAGGGAATTAGAAG+AGG | 0.630755 | 3.3:-90344498 | MS.gene75311:intron |
| GAGATGAGCTTCAAGACGAG+AGG | 0.632000 | 3.3:-90345046 | MS.gene75311:CDS |
| TTCTCTGAGCTTGTAAAGGG+GGG | 0.633732 | 3.3:-90339706 | MS.gene75311:CDS |
| TGAGCATGAAGCAGTTATCG+GGG | 0.635050 | 3.3:-90336299 | MS.gene75311:CDS |
| GATGAGGATGATCAAGATGA+GGG | 0.639519 | 3.3:-90337020 | MS.gene75311:CDS |
| TCTCTGTGGATAAGTGACGT+TGG | 0.645662 | 3.3:+90344031 | None:intergenic |
| AGGAGGAAGTGCACTTACGC+CGG | 0.654057 | 3.3:-90349087 | MS.gene75311:CDS |
| TCATCGGGAAGCAAATCCAA+AGG | 0.658332 | 3.3:-90336994 | MS.gene75311:CDS |
| GTACTAGAACTTATGAGGAG+AGG | 0.658944 | 3.3:-90348628 | MS.gene75311:CDS |
| GAGCATGAAGCAGTTATCGG+GGG | 0.662308 | 3.3:-90336298 | MS.gene75311:CDS |
| TATGGCAAAGATAAGTGCAA+GGG | 0.664612 | 3.3:+90336257 | None:intergenic |
| TAGTTTGAAAGATGTAACAA+AGG | 0.665067 | 3.3:-90347387 | MS.gene75311:CDS |
| TATTCTCTGAGCTTGTAAAG+GGG | 0.667791 | 3.3:-90339708 | MS.gene75311:CDS |
| CTTTCAGAAGCTAGGCAGTG+AGG | 0.667807 | 3.3:-90350783 | MS.gene75311:CDS |
| TGGTTTGAACTGCATAACAC+CGG | 0.678098 | 3.3:-90342597 | MS.gene75311:CDS |
| TTGTTGATGCTGTATTGAAG+AGG | 0.683019 | 3.3:-90341147 | MS.gene75311:CDS |
| AATAATGGTACTATGACCGG+AGG | 0.690528 | 3.3:-90342473 | MS.gene75311:CDS |
| GTACATTGGAGTGAAAGTGA+AGG | 0.691372 | 3.3:-90336958 | MS.gene75311:intron |
| GAGAAGAAAACAAGACCTGG+AGG | 0.691573 | 3.3:-90341203 | MS.gene75311:CDS |
| TTACCGAGAGAAATTTGACA+CGG | 0.697136 | 3.3:-90351520 | MS.gene75311:CDS |
| CTGGCGTTAAATGATCAATG+AGG | 0.697382 | 3.3:+90341437 | None:intergenic |
| CCGAGAGAAATTTGACACGG+AGG | 0.702928 | 3.3:-90351517 | MS.gene75311:CDS |
| AGCATGAAGCAGTTATCGGG+GGG | 0.708246 | 3.3:-90336297 | MS.gene75311:CDS |
| GATTTACTGAAGGAAATAGG+CGG | 0.708498 | 3.3:-90348650 | MS.gene75311:CDS |
| GCCATGATAGGTACAAACAG+AGG | 0.718232 | 3.3:-90340374 | MS.gene75311:intron |
| GGCGTGACATCGGATCTCTG+TGG | 0.720765 | 3.3:+90344017 | None:intergenic |
| TCTCCGATATAACATTAACA+CGG | 0.729652 | 3.3:+90335579 | None:intergenic |
| ATCGGGAAGCAAATCCAAAG+GGG | 0.729892 | 3.3:-90336992 | MS.gene75311:CDS |
| GAGGATGATCAAGATGAGGG+TGG | 0.752008 | 3.3:-90337017 | MS.gene75311:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 90335547 | 90351688 | 90335547 | ID=MS.gene75311 |
| chr3.3 | mRNA | 90335547 | 90351688 | 90335547 | ID=MS.gene75311.t1;Parent=MS.gene75311 |
| chr3.3 | exon | 90351674 | 90351688 | 90351674 | ID=MS.gene75311.t1.exon1;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90351674 | 90351688 | 90351674 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90351490 | 90351565 | 90351490 | ID=MS.gene75311.t1.exon2;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90351490 | 90351565 | 90351490 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90350958 | 90350996 | 90350958 | ID=MS.gene75311.t1.exon3;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90350958 | 90350996 | 90350958 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90350763 | 90350830 | 90350763 | ID=MS.gene75311.t1.exon4;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90350763 | 90350830 | 90350763 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90350613 | 90350684 | 90350613 | ID=MS.gene75311.t1.exon5;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90350613 | 90350684 | 90350613 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90349037 | 90349116 | 90349037 | ID=MS.gene75311.t1.exon6;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90349037 | 90349116 | 90349037 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90348819 | 90348897 | 90348819 | ID=MS.gene75311.t1.exon7;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90348819 | 90348897 | 90348819 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90348594 | 90348711 | 90348594 | ID=MS.gene75311.t1.exon8;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90348594 | 90348711 | 90348594 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90348320 | 90348495 | 90348320 | ID=MS.gene75311.t1.exon9;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90348320 | 90348495 | 90348320 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90347256 | 90347501 | 90347256 | ID=MS.gene75311.t1.exon10;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90347256 | 90347501 | 90347256 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90347049 | 90347170 | 90347049 | ID=MS.gene75311.t1.exon11;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90347049 | 90347170 | 90347049 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90346639 | 90346783 | 90346639 | ID=MS.gene75311.t1.exon12;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90346639 | 90346783 | 90346639 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90345044 | 90345216 | 90345044 | ID=MS.gene75311.t1.exon13;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90345044 | 90345216 | 90345044 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90344791 | 90344890 | 90344791 | ID=MS.gene75311.t1.exon14;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90344791 | 90344890 | 90344791 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90344375 | 90344511 | 90344375 | ID=MS.gene75311.t1.exon15;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90344375 | 90344511 | 90344375 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90343965 | 90344166 | 90343965 | ID=MS.gene75311.t1.exon16;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90343965 | 90344166 | 90343965 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90342594 | 90342681 | 90342594 | ID=MS.gene75311.t1.exon17;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90342594 | 90342681 | 90342594 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90342379 | 90342509 | 90342379 | ID=MS.gene75311.t1.exon18;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90342379 | 90342509 | 90342379 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90341661 | 90341810 | 90341661 | ID=MS.gene75311.t1.exon19;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90341661 | 90341810 | 90341661 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90341351 | 90341542 | 90341351 | ID=MS.gene75311.t1.exon20;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90341351 | 90341542 | 90341351 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90341092 | 90341275 | 90341092 | ID=MS.gene75311.t1.exon21;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90341092 | 90341275 | 90341092 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90340936 | 90341006 | 90340936 | ID=MS.gene75311.t1.exon22;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90340936 | 90341006 | 90340936 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90340714 | 90340865 | 90340714 | ID=MS.gene75311.t1.exon23;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90340714 | 90340865 | 90340714 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90340218 | 90340386 | 90340218 | ID=MS.gene75311.t1.exon24;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90340218 | 90340386 | 90340218 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90339672 | 90339821 | 90339672 | ID=MS.gene75311.t1.exon25;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90339672 | 90339821 | 90339672 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90336959 | 90337063 | 90336959 | ID=MS.gene75311.t1.exon26;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90336959 | 90337063 | 90336959 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90336175 | 90336349 | 90336175 | ID=MS.gene75311.t1.exon27;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90336175 | 90336349 | 90336175 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| chr3.3 | exon | 90335547 | 90335719 | 90335547 | ID=MS.gene75311.t1.exon28;Parent=MS.gene75311.t1 |
| chr3.3 | CDS | 90335547 | 90335719 | 90335547 | ID=cds.MS.gene75311.t1;Parent=MS.gene75311.t1 |
| Gene Sequence |
| Protein sequence |
