Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75542.t1 | XP_003601873.1 | 100 | 535 | 0 | 0 | 1 | 535 | 1 | 535 | 1.30E-300 | 1041.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75542.t1 | O04450 | 89.3 | 535 | 57 | 0 | 1 | 535 | 1 | 535 | 2.2e-277 | 955.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75542.t1 | G7J2L7 | 100.0 | 535 | 0 | 0 | 1 | 535 | 1 | 535 | 9.3e-301 | 1041.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene75542 | 0.813871 | 2.06E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene75542 | -0.818272 | 2.14E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene75542 | -0.819147 | 1.35E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene75542 | -0.808053 | 3.74E-50 | -1.69E-46 |
| MS.gene053633 | MS.gene75542 | -0.802547 | 5.33E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene75542 | -0.803207 | 3.89E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene75542 | -0.805332 | 1.41E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene75542 | -0.822043 | 2.93E-53 | -1.69E-46 |
| MS.gene060778 | MS.gene75542 | -0.800753 | 1.24E-48 | -1.69E-46 |
| MS.gene060982 | MS.gene75542 | -0.810243 | 1.27E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75542.t1 | MTR_3g086330 | 100.000 | 535 | 0 | 0 | 1 | 535 | 1 | 535 | 0.0 | 1098 |
| MS.gene75542.t1 | MTR_3g109925 | 37.285 | 523 | 314 | 8 | 17 | 531 | 14 | 530 | 2.07e-99 | 310 |
| MS.gene75542.t1 | MTR_2g013540 | 33.397 | 527 | 335 | 9 | 14 | 531 | 5 | 524 | 3.46e-89 | 285 |
| MS.gene75542.t1 | MTR_7g113470 | 33.525 | 522 | 333 | 8 | 14 | 531 | 6 | 517 | 2.97e-84 | 271 |
| MS.gene75542.t1 | MTR_7g067470 | 33.525 | 522 | 333 | 8 | 14 | 531 | 6 | 517 | 6.86e-84 | 270 |
| MS.gene75542.t1 | MTR_5g087560 | 31.569 | 529 | 346 | 8 | 10 | 530 | 6 | 526 | 9.27e-80 | 260 |
| MS.gene75542.t1 | MTR_3g109925 | 32.941 | 510 | 276 | 7 | 28 | 531 | 24 | 473 | 2.87e-77 | 251 |
| MS.gene75542.t1 | MTR_8g088270 | 32.707 | 532 | 329 | 10 | 20 | 530 | 11 | 534 | 2.14e-72 | 240 |
| MS.gene75542.t1 | MTR_7g406870 | 29.709 | 515 | 342 | 9 | 29 | 530 | 18 | 525 | 2.62e-60 | 208 |
| MS.gene75542.t1 | MTR_6g032870 | 28.791 | 521 | 353 | 9 | 18 | 530 | 10 | 520 | 3.29e-56 | 197 |
| MS.gene75542.t1 | MTR_1g030650 | 26.744 | 516 | 370 | 6 | 18 | 530 | 13 | 523 | 3.46e-54 | 192 |
| MS.gene75542.t1 | MTR_2g013540 | 30.504 | 377 | 251 | 7 | 161 | 531 | 4 | 375 | 5.20e-51 | 180 |
| MS.gene75542.t1 | MTR_7g406870 | 27.619 | 420 | 284 | 9 | 124 | 530 | 1 | 413 | 4.96e-35 | 136 |
| MS.gene75542.t1 | MTR_8g105970 | 30.976 | 297 | 175 | 7 | 188 | 477 | 62 | 335 | 1.07e-32 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75542.t1 | AT1G24510 | 89.346 | 535 | 57 | 0 | 1 | 535 | 1 | 535 | 0.0 | 1005 |
| MS.gene75542.t1 | AT1G24510 | 90.000 | 470 | 47 | 0 | 66 | 535 | 13 | 482 | 0.0 | 889 |
| MS.gene75542.t1 | AT1G24510 | 89.978 | 459 | 46 | 0 | 77 | 535 | 1 | 459 | 0.0 | 868 |
| MS.gene75542.t1 | AT3G18190 | 36.328 | 512 | 313 | 7 | 28 | 531 | 28 | 534 | 1.69e-101 | 316 |
| MS.gene75542.t1 | AT5G26360 | 34.091 | 528 | 334 | 8 | 11 | 531 | 4 | 524 | 1.54e-86 | 278 |
| MS.gene75542.t1 | AT5G20890 | 33.464 | 511 | 328 | 7 | 25 | 531 | 15 | 517 | 7.26e-83 | 267 |
| MS.gene75542.t1 | AT3G11830 | 31.191 | 529 | 348 | 7 | 10 | 530 | 6 | 526 | 8.09e-77 | 252 |
| MS.gene75542.t1 | AT3G20050 | 32.143 | 532 | 332 | 9 | 20 | 530 | 11 | 534 | 5.10e-76 | 250 |
| MS.gene75542.t1 | AT3G11830 | 31.380 | 529 | 345 | 8 | 10 | 530 | 6 | 524 | 8.69e-76 | 249 |
| MS.gene75542.t1 | AT5G16070 | 28.794 | 514 | 347 | 8 | 29 | 530 | 18 | 524 | 1.68e-59 | 206 |
| MS.gene75542.t1 | AT3G02530 | 28.738 | 515 | 347 | 9 | 29 | 530 | 18 | 525 | 1.08e-57 | 201 |
| MS.gene75542.t1 | AT3G03960 | 25.520 | 529 | 360 | 7 | 18 | 530 | 16 | 526 | 8.00e-52 | 186 |
| MS.gene75542.t1 | AT1G67760 | 85.455 | 55 | 8 | 0 | 1 | 55 | 1 | 55 | 6.33e-26 | 102 |
| MS.gene75542.t1 | AT1G26230 | 30.769 | 117 | 77 | 1 | 40 | 152 | 2 | 118 | 3.32e-11 | 66.2 |
| MS.gene75542.t1 | AT1G26230 | 30.769 | 117 | 77 | 1 | 40 | 152 | 10 | 126 | 3.76e-11 | 66.2 |
| MS.gene75542.t1 | AT1G26230 | 30.769 | 117 | 77 | 1 | 40 | 152 | 62 | 178 | 3.86e-11 | 66.2 |
| MS.gene75542.t1 | AT1G26230 | 30.769 | 117 | 77 | 1 | 40 | 152 | 62 | 178 | 4.13e-11 | 65.9 |
| MS.gene75542.t1 | AT1G26230 | 30.769 | 117 | 77 | 1 | 40 | 152 | 62 | 178 | 4.32e-11 | 65.9 |
Find 131 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGCAAGCTGAGAGGCTTT+TGG | 0.216810 | 3.1:-69197749 | MS.gene75542:CDS |
| TGAGTTTGGTGAAACTATTT+TGG | 0.252642 | 3.1:-69197635 | MS.gene75542:CDS |
| AGAGAGGAAAGATGTTAATT+TGG | 0.255619 | 3.1:-69197369 | MS.gene75542:CDS |
| AGGAAAGGTTGGTGGGAAAT+TGG | 0.275960 | 3.1:-69197330 | MS.gene75542:CDS |
| ATTGCTAATAAGTTTGAGTT+TGG | 0.316748 | 3.1:-69197649 | MS.gene75542:CDS |
| AATACGAGCGACGGCTTTAC+CGG | 0.319084 | 3.1:+69198102 | None:intergenic |
| GAAGATACTGAGTTGGTATA+TGG | 0.326902 | 3.1:-69197308 | MS.gene75542:CDS |
| GGAACTTGCCAGCTGTTAGA+TGG | 0.327806 | 3.1:-69196807 | MS.gene75542:CDS |
| GAATGATGGAGCGACGATAT+TGG | 0.333446 | 3.1:-69197887 | MS.gene75542:CDS |
| CAGTATGCAATTAGAGCATT+TGG | 0.341403 | 3.1:-69194473 | MS.gene75542:CDS |
| TTGGATCTGATTAAAGTAGA+AGG | 0.353109 | 3.1:-69197350 | MS.gene75542:CDS |
| TAGAGCATTTGGGGATGCTT+TGG | 0.353755 | 3.1:-69194462 | MS.gene75542:CDS |
| CAGGATTGCTGTTGAGAATC+TGG | 0.357169 | 3.1:-69197677 | MS.gene75542:CDS |
| CGCAATAATTCAATTGTGTA+TGG | 0.358368 | 3.1:-69195732 | MS.gene75542:CDS |
| TCAATTTGCTTTGGCATTTG+AGG | 0.361290 | 3.1:+69197257 | None:intergenic |
| AAGATAATGTTTCAATTGGT+TGG | 0.367949 | 3.1:+69194402 | None:intergenic |
| AACCCTTGTTATTTGCCAAT+GGG | 0.374410 | 3.1:-69196866 | MS.gene75542:CDS |
| TATTCAAGGCTGGCATCGTT+AGG | 0.383631 | 3.1:-69196385 | MS.gene75542:intron |
| ACAGAAGATAATGTTTCAAT+TGG | 0.393608 | 3.1:+69194398 | None:intergenic |
| AGTATGCAATTAGAGCATTT+GGG | 0.396525 | 3.1:-69194472 | MS.gene75542:CDS |
| CAGATTCTCAACAGCAATCC+TGG | 0.396710 | 3.1:+69197678 | None:intergenic |
| CCACCATCAGCTTCGCAATC+TGG | 0.398136 | 3.1:+69197845 | None:intergenic |
| TTAGCATCTTCAATTTGCTT+TGG | 0.400918 | 3.1:+69197248 | None:intergenic |
| TACCCTTCAGCAATCCTAAT+AGG | 0.405829 | 3.1:+69197712 | None:intergenic |
| CAACCCTTGTTATTTGCCAA+TGG | 0.407278 | 3.1:-69196867 | MS.gene75542:CDS |
| GAATTGATTGCCATAGCAAC+AGG | 0.418257 | 3.1:-69196766 | MS.gene75542:intron |
| ATCAATATCAACCTTATGCT+TGG | 0.422485 | 3.1:+69197181 | None:intergenic |
| AACGTGGGATTCATCCTATT+AGG | 0.438166 | 3.1:-69197726 | MS.gene75542:CDS |
| CATATGATGACGTCGCCGTC+GGG | 0.441250 | 3.1:+69198031 | None:intergenic |
| GGTGGAGTTGTCGAGGAGTC+AGG | 0.444912 | 3.1:-69197827 | MS.gene75542:CDS |
| CTCCCTCGGTCCCAAGGGTA+TGG | 0.444952 | 3.1:-69198071 | MS.gene75542:CDS |
| GAATCGAAGAACCGTCTTCG+TGG | 0.447830 | 3.1:-69198154 | MS.gene75542:CDS |
| AAGAATTGTTCCTAGGTTCC+AGG | 0.448072 | 3.1:-69196607 | MS.gene75542:CDS |
| CCGTACCTCCCTCGGTCCCA+AGG | 0.450538 | 3.1:-69198077 | MS.gene75542:CDS |
| GGAGTTAACTGCAGAAAAGT+TGG | 0.452554 | 3.1:-69196586 | MS.gene75542:CDS |
| AAGCATCTTATCCATACCCT+TGG | 0.455553 | 3.1:+69198060 | None:intergenic |
| ATGGGTTGGTGGTGTTGAGT+TGG | 0.463335 | 3.1:-69196788 | MS.gene75542:CDS |
| TAGATACCCTGGTGTAGAAC+AGG | 0.465187 | 3.1:-69195658 | MS.gene75542:intron |
| TTGCCAGCTGTTAGATGGGT+TGG | 0.487328 | 3.1:-69196802 | MS.gene75542:CDS |
| CGTATTCTCCGTACCTCCCT+CGG | 0.488532 | 3.1:-69198085 | MS.gene75542:CDS |
| GAAATCGGTGATGGAACTAC+TGG | 0.496232 | 3.1:-69197799 | MS.gene75542:CDS |
| AGCGACGATATTGGAGCAGA+TGG | 0.496717 | 3.1:-69197878 | MS.gene75542:CDS |
| CTTCATCGTCAAAACCCCAT+TGG | 0.502021 | 3.1:+69196851 | None:intergenic |
| AATGCTCAATGTACAGCATT+CGG | 0.502628 | 3.1:+69196336 | None:intergenic |
| TTTGCTTTGGCATTTGAGGA+TGG | 0.503760 | 3.1:+69197261 | None:intergenic |
| AAGATATATTAGTACTCAGA+TGG | 0.504953 | 3.1:+69194070 | None:intergenic |
| GCAGTTAACTCCTGGAACCT+AGG | 0.506692 | 3.1:+69196597 | None:intergenic |
| TGCTTTGGAGTCGATTCCTA+TGG | 0.507540 | 3.1:-69194447 | MS.gene75542:CDS |
| GATTGCTGAAGGGTATGAAA+TGG | 0.509686 | 3.1:-69197704 | MS.gene75542:CDS |
| TTGAGCATTGTGCAAACTCA+AGG | 0.510053 | 3.1:-69196322 | MS.gene75542:CDS |
| GGCATTGATTGCAATGATGT+TGG | 0.511857 | 3.1:-69194208 | MS.gene75542:CDS |
| GAGTTAACTGCAGAAAAGTT+GGG | 0.512302 | 3.1:-69196585 | MS.gene75542:CDS |
| AGGAGTCAGGACTATGAAAT+CGG | 0.512722 | 3.1:-69197814 | MS.gene75542:CDS |
| CAAATCATCTCTTGATGCAC+AGG | 0.514162 | 3.1:-69196828 | MS.gene75542:CDS |
| ATTAAAGTAGAAGGAAAGGT+TGG | 0.519658 | 3.1:-69197341 | MS.gene75542:CDS |
| CCAGCTGTTAGATGGGTTGG+TGG | 0.521172 | 3.1:-69196799 | MS.gene75542:CDS |
| ATTCAAGGCTGGCATCGTTA+GGG | 0.521490 | 3.1:-69196384 | MS.gene75542:intron |
| AGCATCTTATCCATACCCTT+GGG | 0.526337 | 3.1:+69198061 | None:intergenic |
| TGAAAGCATACCTGTTGCTA+TGG | 0.526459 | 3.1:+69196756 | None:intergenic |
| AACGTCTTTGAGACTTTGAT+CGG | 0.527660 | 3.1:-69194163 | MS.gene75542:CDS |
| GAACTTGCCAGCTGTTAGAT+GGG | 0.529474 | 3.1:-69196806 | MS.gene75542:CDS |
| AAGGTGGAAGAATTGTTCCT+AGG | 0.532762 | 3.1:-69196614 | MS.gene75542:CDS |
| TGTGAAGTCTCAGCAAATAA+CGG | 0.532861 | 3.1:-69194378 | MS.gene75542:intron |
| CCTTGGGACCGAGGGAGGTA+CGG | 0.537090 | 3.1:+69198077 | None:intergenic |
| ACCCTTGTTATTTGCCAATG+GGG | 0.538387 | 3.1:-69196865 | MS.gene75542:CDS |
| AGATATATTAGTACTCAGAT+GGG | 0.538795 | 3.1:+69194071 | None:intergenic |
| ATGGCCCTTGCGGAAAATAG+TGG | 0.540167 | 3.1:-69194428 | MS.gene75542:CDS |
| ATTAATGTTGCAGTGTGAAT+CGG | 0.540958 | 3.1:-69197448 | MS.gene75542:intron |
| AAGGGTATGAAATGGCGTCC+AGG | 0.542596 | 3.1:-69197696 | MS.gene75542:CDS |
| ATCCATACCCTTGGGACCGA+GGG | 0.544446 | 3.1:+69198069 | None:intergenic |
| ACTGGAGTAGTTGTGTTGGC+TGG | 0.546101 | 3.1:-69197781 | MS.gene75542:CDS |
| CGTGTAAACCAATATGGCGC+TGG | 0.546887 | 3.1:-69198221 | None:intergenic |
| AACCCCATTGGCAAATAACA+AGG | 0.547165 | 3.1:+69196863 | None:intergenic |
| TATGTTGATCTGCAGGATGT+AGG | 0.549314 | 3.1:-69196892 | MS.gene75542:intron |
| CATCCTATTAGGATTGCTGA+AGG | 0.555989 | 3.1:-69197715 | MS.gene75542:CDS |
| TCTGATTAAAGTAGAAGGAA+AGG | 0.558317 | 3.1:-69197345 | MS.gene75542:CDS |
| TATTGCCGTGGAGGCAGCTG+CGG | 0.559909 | 3.1:-69195682 | MS.gene75542:CDS |
| GTCATACAAGTCTGAATCAA+CGG | 0.560241 | 3.1:+69197610 | None:intergenic |
| AAGTAGAAGGAAAGGTTGGT+GGG | 0.562439 | 3.1:-69197337 | MS.gene75542:CDS |
| CCACCAACCCATCTAACAGC+TGG | 0.565017 | 3.1:+69196799 | None:intergenic |
| AGCAGAGATTGCTGTGAAAG+CGG | 0.565406 | 3.1:-69197411 | MS.gene75542:CDS |
| AATTCAATTGTGTATGGTGG+TGG | 0.567875 | 3.1:-69195726 | MS.gene75542:CDS |
| GCTGTAACAATATTCATTCG+TGG | 0.573464 | 3.1:-69196299 | MS.gene75542:CDS |
| AAAGTAGAAGGAAAGGTTGG+TGG | 0.573563 | 3.1:-69197338 | MS.gene75542:CDS |
| AGCTGATGGTGGAGTTGTCG+AGG | 0.578499 | 3.1:-69197834 | MS.gene75542:CDS |
| GTCGATTCCTATGGCCCTTG+CGG | 0.578950 | 3.1:-69194438 | MS.gene75542:CDS |
| AACTGCAGAAAAGTTGGGAA+AGG | 0.579205 | 3.1:-69196580 | MS.gene75542:intron |
| CGTACCTCCCTCGGTCCCAA+GGG | 0.585314 | 3.1:-69198076 | MS.gene75542:CDS |
| TTGCTGTTGCTGATCTAGAG+AGG | 0.592013 | 3.1:-69197385 | MS.gene75542:CDS |
| ACATATGATGACGTCGCCGT+CGG | 0.592176 | 3.1:+69198030 | None:intergenic |
| ATGCATACCTGTTCTACACC+AGG | 0.592892 | 3.1:+69195651 | None:intergenic |
| TCTTCGATTCTTGTTCTCTG+AGG | 0.593724 | 3.1:+69198167 | None:intergenic |
| CAGGACTATGAAATCGGTGA+TGG | 0.595822 | 3.1:-69197808 | MS.gene75542:CDS |
| GAAATTGGAAGATACTGAGT+TGG | 0.598794 | 3.1:-69197315 | MS.gene75542:CDS |
| GCGCTGGCTTTCGATGAGTA+CGG | 0.602151 | 3.1:-69198205 | MS.gene75542:CDS |
| GCAGCTGCGGATAGATACCC+TGG | 0.603416 | 3.1:-69195669 | MS.gene75542:CDS |
| CAACCAGATTGCGAAGCTGA+TGG | 0.607157 | 3.1:-69197848 | MS.gene75542:CDS |
| TGGAGAAGTTTCAGACGTTG+AGG | 0.608157 | 3.1:-69197154 | MS.gene75542:CDS |
| GAGCATCGAGACCACGAAGA+CGG | 0.609862 | 3.1:+69198143 | None:intergenic |
| TAAGGTTGATATTGATACAG+TGG | 0.610608 | 3.1:-69197174 | MS.gene75542:CDS |
| TATCCATACCCTTGGGACCG+AGG | 0.612999 | 3.1:+69198068 | None:intergenic |
| TGGCTTTCGATGAGTACGGA+AGG | 0.617831 | 3.1:-69198201 | MS.gene75542:CDS |
| AACTACTGGAGTAGTTGTGT+TGG | 0.618822 | 3.1:-69197785 | MS.gene75542:CDS |
| CCAGATTGCGAAGCTGATGG+TGG | 0.619787 | 3.1:-69197845 | MS.gene75542:CDS |
| ATATGGAATCATTGTTGACA+AGG | 0.619909 | 3.1:-69197291 | MS.gene75542:CDS |
| GTATGCAATTAGAGCATTTG+GGG | 0.621724 | 3.1:-69194471 | MS.gene75542:CDS |
| TGCATGCTCTATTGCCGTGG+AGG | 0.622636 | 3.1:-69195691 | MS.gene75542:CDS |
| TCTATCCGCAGCTGCCTCCA+CGG | 0.622675 | 3.1:+69195677 | None:intergenic |
| CAGAAAGCTAACATCTCCGC+CGG | 0.623005 | 3.1:-69198121 | MS.gene75542:CDS |
| TGAGCATTGTGCAAACTCAA+GGG | 0.627646 | 3.1:-69196321 | MS.gene75542:CDS |
| CATACCCTTGGGACCGAGGG+AGG | 0.629850 | 3.1:+69198072 | None:intergenic |
| GATTGCATGCTCTATTGCCG+TGG | 0.631363 | 3.1:-69195694 | MS.gene75542:CDS |
| TTGCAATCAATGCCAAAGTG+AGG | 0.646416 | 3.1:+69194217 | None:intergenic |
| CTCTTCTCGAGCAAGCTGAG+AGG | 0.647309 | 3.1:-69197756 | MS.gene75542:CDS |
| AGGTAACAAAATGATCATTG+AGG | 0.649249 | 3.1:-69195805 | MS.gene75542:CDS |
| TGACATGGTTCAACAATGCA+AGG | 0.652286 | 3.1:-69197108 | MS.gene75542:intron |
| ATCCTATTAGGATTGCTGAA+GGG | 0.653489 | 3.1:-69197714 | MS.gene75542:CDS |
| ATATGATGACGTCGCCGTCG+GGG | 0.655483 | 3.1:+69198032 | None:intergenic |
| ATGATGCATTGTGTGTGGCT+AGG | 0.656157 | 3.1:-69195764 | MS.gene75542:CDS |
| TGTTCTCTGAGGATAATGAA+CGG | 0.665836 | 3.1:+69198178 | None:intergenic |
| GATATATTAGTACTCAGATG+GGG | 0.666907 | 3.1:+69194072 | None:intergenic |
| ACGAGCGACGGCTTTACCGG+CGG | 0.667012 | 3.1:+69198105 | None:intergenic |
| TGCATACCTGTTCTACACCA+GGG | 0.668346 | 3.1:+69195652 | None:intergenic |
| AATAATTCAATTGTGTATGG+TGG | 0.668688 | 3.1:-69195729 | MS.gene75542:CDS |
| ATGTTGGCACCAATGACATG+AGG | 0.676772 | 3.1:-69194192 | MS.gene75542:CDS |
| ACCCCATTGGCAAATAACAA+GGG | 0.683763 | 3.1:+69196864 | None:intergenic |
| AAGATGCTTCAAAGCCCCGA+CGG | 0.693490 | 3.1:-69198046 | MS.gene75542:CDS |
| TATTCATGATGCATTGTGTG+TGG | 0.693925 | 3.1:-69195769 | MS.gene75542:CDS |
| GTAACAATATTCATTCGTGG+AGG | 0.711015 | 3.1:-69196296 | MS.gene75542:intron |
| TGTTGGCACCAATGACATGA+GGG | 0.722471 | 3.1:-69194191 | MS.gene75542:CDS |
| GGTACGGAGAATACGAGCGA+CGG | 0.723999 | 3.1:+69198093 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAATCTTATAAAAATT+TGG | + | chr3.1:69197223-69197242 | None:intergenic | 10.0% |
| !! | TTATTTAATAAAAATAAGCA+GGG | + | chr3.1:69196861-69196880 | None:intergenic | 10.0% |
| !! | TTTATTTAATAAAAATAAGC+AGG | + | chr3.1:69196862-69196881 | None:intergenic | 10.0% |
| !! | AATTTCCAAAATAAAAAACT+AGG | + | chr3.1:69194351-69194370 | None:intergenic | 15.0% |
| !! | ATTAAAAAATAACCAAATGA+CGG | + | chr3.1:69197760-69197779 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr3.1:69196263-69196282 | MS.gene75542:intron | 15.0% |
| !! | ATTTCCAAAATAAAAAACTA+GGG | + | chr3.1:69194350-69194369 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr3.1:69196262-69196281 | MS.gene75542:intron | 15.0% |
| !!! | ACTTTGCTTTTTTTAAATAA+TGG | - | chr3.1:69197701-69197720 | MS.gene75542:CDS | 15.0% |
| !!! | ATCTTATAAAAATTTGGTTT+CGG | + | chr3.1:69197217-69197236 | None:intergenic | 15.0% |
| !!! | GATTATAAATTTTAAGCATT+TGG | - | chr3.1:69197438-69197457 | MS.gene75542:CDS | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr3.1:69196197-69196216 | MS.gene75542:intron | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr3.1:69196222-69196241 | MS.gene75542:intron | 20.0% |
| !! | AAATTTATAATCCTTGTGAT+TGG | + | chr3.1:69197430-69197449 | None:intergenic | 20.0% |
| !! | AATTATAATTTACCGTCATT+TGG | - | chr3.1:69197745-69197764 | MS.gene75542:CDS | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr3.1:69196295-69196314 | MS.gene75542:intron | 20.0% |
| !! | ATATAATCCATACAAAACAA+TGG | - | chr3.1:69197138-69197157 | MS.gene75542:CDS | 20.0% |
| !! | ATTAATTTCCAAATTGGAAA+AGG | - | chr3.1:69196924-69196943 | MS.gene75542:intron | 20.0% |
| !! | CAAAGTAAATGATCTTTATT+TGG | + | chr3.1:69197687-69197706 | None:intergenic | 20.0% |
| !! | CATATTATATTATTAACCCA+CGG | - | chr3.1:69196655-69196674 | MS.gene75542:intron | 20.0% |
| !! | GATCTAATTAATTTCCAAAT+TGG | - | chr3.1:69196918-69196937 | MS.gene75542:intron | 20.0% |
| !! | GTTAATTTATGATCTATTCA+AGG | - | chr3.1:69195887-69195906 | MS.gene75542:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr3.1:69196296-69196315 | MS.gene75542:intron | 20.0% |
| !! | TAGGGTTTAATTGAATATAA+CGG | + | chr3.1:69194319-69194338 | None:intergenic | 20.0% |
| !! | TTAATTTCCAAATTGGAAAA+GGG | - | chr3.1:69196925-69196944 | MS.gene75542:intron | 20.0% |
| !! | TTGTGGTTAATTTCATAATT+TGG | - | chr3.1:69196823-69196842 | MS.gene75542:CDS | 20.0% |
| !!! | ACCTTTCCTTTTTTTTTTTT+GGG | - | chr3.1:69195767-69195786 | MS.gene75542:CDS | 20.0% |
| !!! | ATAGACAAAAATTCTGAAAA+TGG | - | chr3.1:69197035-69197054 | MS.gene75542:intron | 20.0% |
| !!! | CAATTATGATTCTTTTGTTT+TGG | - | chr3.1:69195551-69195570 | MS.gene75542:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr3.1:69196332-69196351 | MS.gene75542:CDS | 20.0% |
| !!! | GATTTTCTTTTTGTAAATGA+AGG | - | chr3.1:69195653-69195672 | MS.gene75542:intron | 20.0% |
| !!! | TATGTAATTAGTCATCTTTT+AGG | - | chr3.1:69196060-69196079 | MS.gene75542:intron | 20.0% |
| !!! | TTTTATTCCATTGTTTTGTA+TGG | + | chr3.1:69197148-69197167 | None:intergenic | 20.0% |
| !!! | TTTTTTTACCTATCTAAGTA+GGG | - | chr3.1:69195243-69195262 | MS.gene75542:intron | 20.0% |
| !!! | TTTTTTTTACCTATCTAAGT+AGG | - | chr3.1:69195242-69195261 | MS.gene75542:intron | 20.0% |
| ! | AAATGAAATGAAGAGAGAAA+TGG | + | chr3.1:69194290-69194309 | None:intergenic | 25.0% |
| ! | AAGATAATGTTTCAATTGGT+TGG | + | chr3.1:69197887-69197906 | None:intergenic | 25.0% |
| ! | AATAATTCAATTGTGTATGG+TGG | - | chr3.1:69196557-69196576 | MS.gene75542:intron | 25.0% |
| ! | ACAGAAGATAATGTTTCAAT+TGG | + | chr3.1:69197891-69197910 | None:intergenic | 25.0% |
| ! | ACCACTAAAACAAAATGTTA+AGG | + | chr3.1:69196027-69196046 | None:intergenic | 25.0% |
| ! | ACCCAAAAAAAAAAAAGGAA+AGG | + | chr3.1:69195771-69195790 | None:intergenic | 25.0% |
| ! | AGAAGACCCAAAAAAAAAAA+AGG | + | chr3.1:69195776-69195795 | None:intergenic | 25.0% |
| ! | ATGAGAAATAGTTTGAAAGT+AGG | - | chr3.1:69197587-69197606 | MS.gene75542:intron | 25.0% |
| ! | ATTGTACTTGTCTAAATGAT+TGG | + | chr3.1:69197640-69197659 | None:intergenic | 25.0% |
| ! | CAAAGTAGGTCAATTAAATT+GGG | + | chr3.1:69196162-69196181 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr3.1:69196221-69196240 | MS.gene75542:intron | 25.0% |
| ! | GTAAGCCATAAAAAGAAATA+AGG | + | chr3.1:69195743-69195762 | None:intergenic | 25.0% |
| ! | TAATTTCCAAATTGGAAAAG+GGG | - | chr3.1:69196926-69196945 | MS.gene75542:intron | 25.0% |
| ! | TATTGGTATTTGAGCTAATT+GGG | - | chr3.1:69195289-69195308 | MS.gene75542:intron | 25.0% |
| ! | TGTATAAATAAAGGAGAAAG+TGG | - | chr3.1:69196206-69196225 | MS.gene75542:intron | 25.0% |
| ! | TGTTAACACTTAACAATAAC+AGG | + | chr3.1:69196789-69196808 | None:intergenic | 25.0% |
| ! | TTCACATTATAAGAATGTCT+TGG | - | chr3.1:69197484-69197503 | MS.gene75542:intron | 25.0% |
| ! | TTGAATTTACTAGCAATTGT+GGG | - | chr3.1:69195799-69195818 | MS.gene75542:CDS | 25.0% |
| ! | TTTGAATTTACTAGCAATTG+TGG | - | chr3.1:69195798-69195817 | MS.gene75542:CDS | 25.0% |
| !! | AATACTCAAGAGATAGATTT+TGG | + | chr3.1:69197371-69197390 | None:intergenic | 25.0% |
| !! | ACAAAAATTCTGAAAATGGA+GGG | - | chr3.1:69197039-69197058 | MS.gene75542:intron | 25.0% |
| !! | ATTGCTAATAAGTTTGAGTT+TGG | - | chr3.1:69194637-69194656 | MS.gene75542:intron | 25.0% |
| !! | CTTTCAAACTATTTCTCATT+AGG | + | chr3.1:69197586-69197605 | None:intergenic | 25.0% |
| !! | GAATTTTTGTCTATGAACAT+TGG | + | chr3.1:69197029-69197048 | None:intergenic | 25.0% |
| !! | TTAAAGTCGTTCTAAACTTT+AGG | - | chr3.1:69196701-69196720 | MS.gene75542:intron | 25.0% |
| !! | TTTCTTTTTGTAAATGAAGG+TGG | - | chr3.1:69195656-69195675 | MS.gene75542:intron | 25.0% |
| !!! | AAAAACTAGGGTTTGATTTT+AGG | + | chr3.1:69194338-69194357 | None:intergenic | 25.0% |
| !!! | AAAACTAGGGTTTGATTTTA+GGG | + | chr3.1:69194337-69194356 | None:intergenic | 25.0% |
| !!! | ACAGAAATATTTTGATGACA+TGG | - | chr3.1:69195163-69195182 | MS.gene75542:intron | 25.0% |
| !!! | CAAACCCTAGTTTTTTATTT+TGG | - | chr3.1:69194343-69194362 | MS.gene75542:intron | 25.0% |
| !!! | GACCTTTCCTTTTTTTTTTT+TGG | - | chr3.1:69195766-69195785 | MS.gene75542:CDS | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr3.1:69196331-69196350 | MS.gene75542:CDS | 25.0% |
| !!! | TCCTTAACATTTTGTTTTAG+TGG | - | chr3.1:69196023-69196042 | MS.gene75542:intron | 25.0% |
| !!! | TTAATGCTTTTGTTGATTGA+TGG | - | chr3.1:69197775-69197794 | MS.gene75542:CDS | 25.0% |
| AAAAAAAAAAGGAAAGGTCG+AGG | + | chr3.1:69195765-69195784 | None:intergenic | 30.0% | |
| AAACAGACAACAAGAATCAT+TGG | + | chr3.1:69195846-69195865 | None:intergenic | 30.0% | |
| AAATGAACTGTTAGTGTATC+AGG | - | chr3.1:69197065-69197084 | MS.gene75542:intron | 30.0% | |
| AATTGTGGGGAAAGTAATTT+AGG | - | chr3.1:69195813-69195832 | MS.gene75542:intron | 30.0% | |
| AGACTAAATATGGAGATAGA+TGG | + | chr3.1:69196998-69197017 | None:intergenic | 30.0% | |
| AGAGAGGAAAGATGTTAATT+TGG | - | chr3.1:69194917-69194936 | MS.gene75542:intron | 30.0% | |
| AGGTAACAAAATGATCATTG+AGG | - | chr3.1:69196481-69196500 | MS.gene75542:intron | 30.0% | |
| ATATGGAATCATTGTTGACA+AGG | - | chr3.1:69194995-69195014 | MS.gene75542:intron | 30.0% | |
| ATCAATATCAACCTTATGCT+TGG | + | chr3.1:69195108-69195127 | None:intergenic | 30.0% | |
| ATTAAAGTAGAAGGAAAGGT+TGG | - | chr3.1:69194945-69194964 | MS.gene75542:intron | 30.0% | |
| ATTAATGTTGCAGTGTGAAT+CGG | - | chr3.1:69194838-69194857 | MS.gene75542:intron | 30.0% | |
| ATTGTATAAACTTCATACCC+TGG | + | chr3.1:69197120-69197139 | None:intergenic | 30.0% | |
| ATTTATGATCTATTCAAGGC+TGG | - | chr3.1:69195891-69195910 | MS.gene75542:intron | 30.0% | |
| CCAAAGTAGGTCAATTAAAT+TGG | + | chr3.1:69196163-69196182 | None:intergenic | 30.0% | |
| CCAATTTAATTGACCTACTT+TGG | - | chr3.1:69196160-69196179 | MS.gene75542:intron | 30.0% | |
| CGCAATAATTCAATTGTGTA+TGG | - | chr3.1:69196554-69196573 | MS.gene75542:intron | 30.0% | |
| GATTATTTATGTTGATCTGC+AGG | - | chr3.1:69195387-69195406 | MS.gene75542:intron | 30.0% | |
| GTGTTTGCACTTTATTGAAA+AGG | - | chr3.1:69195365-69195384 | MS.gene75542:intron | 30.0% | |
| TAAATTTGTCAAGATTGCTC+AGG | + | chr3.1:69196432-69196451 | None:intergenic | 30.0% | |
| TCCCAAATAAATTAAACCGT+GGG | + | chr3.1:69196674-69196693 | None:intergenic | 30.0% | |
| TCTGATTAAAGTAGAAGGAA+AGG | - | chr3.1:69194941-69194960 | MS.gene75542:intron | 30.0% | |
| TGAATTTACTAGCAATTGTG+GGG | - | chr3.1:69195800-69195819 | MS.gene75542:CDS | 30.0% | |
| TTGGATCTGATTAAAGTAGA+AGG | - | chr3.1:69194936-69194955 | MS.gene75542:intron | 30.0% | |
| TTTGTGTGAAAAACCAAAGT+AGG | + | chr3.1:69196176-69196195 | None:intergenic | 30.0% | |
| ! | AACCCACGGTTTAATTTATT+TGG | - | chr3.1:69196669-69196688 | MS.gene75542:intron | 30.0% |
| ! | ACAATAGATCTTTGACTTTG+TGG | - | chr3.1:69196806-69196825 | MS.gene75542:CDS | 30.0% |
| ! | ACCCACGGTTTAATTTATTT+GGG | - | chr3.1:69196670-69196689 | MS.gene75542:intron | 30.0% |
| ! | AGTATGCAATTAGAGCATTT+GGG | - | chr3.1:69197814-69197833 | MS.gene75542:CDS | 30.0% |
| ! | ATTTATCCCCTTTTCCAATT+TGG | + | chr3.1:69196935-69196954 | None:intergenic | 30.0% |
| ! | CAAAAATTCTGAAAATGGAG+GGG | - | chr3.1:69197040-69197059 | MS.gene75542:intron | 30.0% |
| ! | GACAAAAATTCTGAAAATGG+AGG | - | chr3.1:69197038-69197057 | MS.gene75542:intron | 30.0% |
| ! | GGAGGTAGTATAATCTTTTA+TGG | - | chr3.1:69196371-69196390 | MS.gene75542:CDS | 30.0% |
| ! | GTATTGGTATTTGAGCTAAT+TGG | - | chr3.1:69195288-69195307 | MS.gene75542:intron | 30.0% |
| ! | TTAGCATCTTCAATTTGCTT+TGG | + | chr3.1:69195041-69195060 | None:intergenic | 30.0% |
| ! | TTCACTAAACGCTTACATTT+TGG | + | chr3.1:69194713-69194732 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr3.1:69196309-69196328 | MS.gene75542:CDS | 30.0% |
| ! | TTTTTGTGTATAGCGAATGA+TGG | - | chr3.1:69194385-69194404 | MS.gene75542:CDS | 30.0% |
| !! | TAAGGTTGATATTGATACAG+TGG | - | chr3.1:69195112-69195131 | MS.gene75542:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr3.1:69196310-69196329 | MS.gene75542:CDS | 30.0% |
| !! | TGAGTTTGGTGAAACTATTT+TGG | - | chr3.1:69194651-69194670 | MS.gene75542:intron | 30.0% |
| !! | TTAGTCATCTTTTAGGAGAT+AGG | - | chr3.1:69196067-69196086 | MS.gene75542:intron | 30.0% |
| !!! | CTCAGCCTTATTTCTTTTTA+TGG | - | chr3.1:69195735-69195754 | MS.gene75542:CDS | 30.0% |
| AAAGTCAATGTCATGATGTG+CGG | + | chr3.1:69198026-69198045 | None:intergenic | 35.0% | |
| AATGCTCAATGTACAGCATT+CGG | + | chr3.1:69195953-69195972 | None:intergenic | 35.0% | |
| AATTCAATTGTGTATGGTGG+TGG | - | chr3.1:69196560-69196579 | MS.gene75542:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr3.1:69196345-69196364 | MS.gene75542:CDS | 35.0% | |
| AGTGAATCGATACATGATCT+TGG | - | chr3.1:69194727-69194746 | MS.gene75542:intron | 35.0% | |
| ATCCTATTAGGATTGCTGAA+GGG | - | chr3.1:69194572-69194591 | MS.gene75542:intron | 35.0% | |
| CTCCCAAATAAATTAAACCG+TGG | + | chr3.1:69196675-69196694 | None:intergenic | 35.0% | |
| GAAATTGGAAGATACTGAGT+TGG | - | chr3.1:69194971-69194990 | MS.gene75542:intron | 35.0% | |
| GAGTTAACTGCAGAAAAGTT+GGG | - | chr3.1:69195701-69195720 | MS.gene75542:CDS | 35.0% | |
| GCATGAGCATAGTAATAATC+AGG | + | chr3.1:69197960-69197979 | None:intergenic | 35.0% | |
| GCTGTAACAATATTCATTCG+TGG | - | chr3.1:69195987-69196006 | MS.gene75542:intron | 35.0% | |
| GGCAAAGTGAAGACTAAATA+TGG | + | chr3.1:69197008-69197027 | None:intergenic | 35.0% | |
| GGCATGTAAATTGACACAAA+TGG | - | chr3.1:69197608-69197627 | MS.gene75542:CDS | 35.0% | |
| GTAACAATATTCATTCGTGG+AGG | - | chr3.1:69195990-69196009 | MS.gene75542:intron | 35.0% | |
| GTAGGTCAATTAAATTGGGA+CGG | + | chr3.1:69196158-69196177 | None:intergenic | 35.0% | |
| GTCATACAAGTCTGAATCAA+CGG | + | chr3.1:69194679-69194698 | None:intergenic | 35.0% | |
| GTGATCAAAAGTTCATCTGA+AGG | - | chr3.1:69197295-69197314 | MS.gene75542:CDS | 35.0% | |
| TATAATCCTTGTGATTGGTG+TGG | + | chr3.1:69197425-69197444 | None:intergenic | 35.0% | |
| TATTCATGATGCATTGTGTG+TGG | - | chr3.1:69196517-69196536 | MS.gene75542:intron | 35.0% | |
| TCATACCCTGGACAAAATAA+AGG | + | chr3.1:69197108-69197127 | None:intergenic | 35.0% | |
| TCTGATATGTTGCAGTTTCT+GGG | + | chr3.1:69197194-69197213 | None:intergenic | 35.0% | |
| TGTCTATTTGAGAAGAGTTG+TGG | + | chr3.1:69197527-69197546 | None:intergenic | 35.0% | |
| TGTGAAGTCTCAGCAAATAA+CGG | - | chr3.1:69197908-69197927 | MS.gene75542:intron | 35.0% | |
| ! | CAGTATGCAATTAGAGCATT+TGG | - | chr3.1:69197813-69197832 | MS.gene75542:CDS | 35.0% |
| ! | GTATGCAATTAGAGCATTTG+GGG | - | chr3.1:69197815-69197834 | MS.gene75542:CDS | 35.0% |
| ! | TCAATTTGCTTTGGCATTTG+AGG | + | chr3.1:69195032-69195051 | None:intergenic | 35.0% |
| ! | TGTTCTCTGAGGATAATGAA+CGG | + | chr3.1:69194111-69194130 | None:intergenic | 35.0% |
| ! | TTCATCTGAAGGTATGAAGA+GGG | - | chr3.1:69197306-69197325 | MS.gene75542:CDS | 35.0% |
| !! | AAAAAAGCTGCCTTGTTGTT+TGG | - | chr3.1:69196451-69196470 | MS.gene75542:intron | 35.0% |
| !! | AACCCTTGTTATTTGCCAAT+GGG | - | chr3.1:69195420-69195439 | MS.gene75542:intron | 35.0% |
| !! | AACGTCTTTGAGACTTTGAT+CGG | - | chr3.1:69198123-69198142 | MS.gene75542:CDS | 35.0% |
| !! | ATCGTTAGGGAAAAAGCATT+TGG | - | chr3.1:69195915-69195934 | MS.gene75542:intron | 35.0% |
| !! | GAAGATACTGAGTTGGTATA+TGG | - | chr3.1:69194978-69194997 | MS.gene75542:intron | 35.0% |
| !! | TCAACCTTATGCTTGGTTTT+TGG | + | chr3.1:69195101-69195120 | None:intergenic | 35.0% |
| !!! | CTTGTCCTTTATTTTGTCCA+GGG | - | chr3.1:69197100-69197119 | MS.gene75542:intron | 35.0% |
| !!! | TCTTGTCCTTTATTTTGTCC+AGG | - | chr3.1:69197099-69197118 | MS.gene75542:intron | 35.0% |
| !!! | TTATGCTTGGTTTTTGGCTT+CGG | + | chr3.1:69195095-69195114 | None:intergenic | 35.0% |
| AAAGTAGAAGGAAAGGTTGG+TGG | - | chr3.1:69194948-69194967 | MS.gene75542:intron | 40.0% | |
| AACCCCATTGGCAAATAACA+AGG | + | chr3.1:69195426-69195445 | None:intergenic | 40.0% | |
| AACGTGGGATTCATCCTATT+AGG | - | chr3.1:69194560-69194579 | MS.gene75542:intron | 40.0% | |
| AACTACTGGAGTAGTTGTGT+TGG | - | chr3.1:69194501-69194520 | MS.gene75542:intron | 40.0% | |
| AACTGCAGAAAAGTTGGGAA+AGG | - | chr3.1:69195706-69195725 | MS.gene75542:CDS | 40.0% | |
| AAGAATTGTTCCTAGGTTCC+AGG | - | chr3.1:69195679-69195698 | MS.gene75542:CDS | 40.0% | |
| AAGCATCTTATCCATACCCT+TGG | + | chr3.1:69194229-69194248 | None:intergenic | 40.0% | |
| AAGGTGGAAGAATTGTTCCT+AGG | - | chr3.1:69195672-69195691 | MS.gene75542:CDS | 40.0% | |
| AAGTGCAAACACATTCTAGC+AGG | + | chr3.1:69195357-69195376 | None:intergenic | 40.0% | |
| AATATTCATTCGTGGAGGTG+AGG | - | chr3.1:69195995-69196014 | MS.gene75542:intron | 40.0% | |
| ACCCCATTGGCAAATAACAA+GGG | + | chr3.1:69195425-69195444 | None:intergenic | 40.0% | |
| AGCATCTTATCCATACCCTT+GGG | + | chr3.1:69194228-69194247 | None:intergenic | 40.0% | |
| AGGAGTCAGGACTATGAAAT+CGG | - | chr3.1:69194472-69194491 | MS.gene75542:CDS | 40.0% | |
| ATGGTTCAACAATGCAAGGT+TGG | - | chr3.1:69195182-69195201 | MS.gene75542:intron | 40.0% | |
| ATTTCCCCATCTGAGTACTA+AGG | - | chr3.1:69198210-69198229 | MS.gene75542:CDS | 40.0% | |
| CAAATCATCTCTTGATGCAC+AGG | - | chr3.1:69195458-69195477 | MS.gene75542:intron | 40.0% | |
| CACTTGCTCTTTACTGGTAT+TGG | - | chr3.1:69195272-69195291 | MS.gene75542:intron | 40.0% | |
| CATCCTATTAGGATTGCTGA+AGG | - | chr3.1:69194571-69194590 | MS.gene75542:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr3.1:69196346-69196365 | MS.gene75542:CDS | 40.0% | |
| GAAGCCAAAAACCAAGCATA+AGG | - | chr3.1:69195094-69195113 | MS.gene75542:intron | 40.0% | |
| GAATTGATTGCCATAGCAAC+AGG | - | chr3.1:69195520-69195539 | MS.gene75542:intron | 40.0% | |
| GCTGAAAGTGAATGTTCAAG+AGG | + | chr3.1:69196741-69196760 | None:intergenic | 40.0% | |
| GGAGTTAACTGCAGAAAAGT+TGG | - | chr3.1:69195700-69195719 | MS.gene75542:CDS | 40.0% | |
| GTCAATTAAATTGGGACGGA+GGG | + | chr3.1:69196154-69196173 | None:intergenic | 40.0% | |
| GTCTGATATGTTGCAGTTTC+TGG | + | chr3.1:69197195-69197214 | None:intergenic | 40.0% | |
| TAATAGCCACACCAATCACA+AGG | - | chr3.1:69197416-69197435 | MS.gene75542:CDS | 40.0% | |
| TACCCTTCAGCAATCCTAAT+AGG | + | chr3.1:69194577-69194596 | None:intergenic | 40.0% | |
| TATGTTGATCTGCAGGATGT+AGG | - | chr3.1:69195394-69195413 | MS.gene75542:intron | 40.0% | |
| TCTTCGATTCTTGTTCTCTG+AGG | + | chr3.1:69194122-69194141 | None:intergenic | 40.0% | |
| TGACATGGTTCAACAATGCA+AGG | - | chr3.1:69195178-69195197 | MS.gene75542:intron | 40.0% | |
| TTTGCTTTGGCATTTGAGGA+TGG | + | chr3.1:69195028-69195047 | None:intergenic | 40.0% | |
| ! | AAGTAGAAGGAAAGGTTGGT+GGG | - | chr3.1:69194949-69194968 | MS.gene75542:intron | 40.0% |
| ! | ACTTTTCTGCAGTTAACTCC+TGG | + | chr3.1:69195700-69195719 | None:intergenic | 40.0% |
| ! | GATTGCTGAAGGGTATGAAA+TGG | - | chr3.1:69194582-69194601 | MS.gene75542:intron | 40.0% |
| ! | GTTCATCTGAAGGTATGAAG+AGG | - | chr3.1:69197305-69197324 | MS.gene75542:CDS | 40.0% |
| ! | TGAAAGCATACCTGTTGCTA+TGG | + | chr3.1:69195533-69195552 | None:intergenic | 40.0% |
| ! | TGAGCATTGTGCAAACTCAA+GGG | - | chr3.1:69195965-69195984 | MS.gene75542:intron | 40.0% |
| ! | TTGAGCATTGTGCAAACTCA+AGG | - | chr3.1:69195964-69195983 | MS.gene75542:intron | 40.0% |
| !! | ACCCTTGTTATTTGCCAATG+GGG | - | chr3.1:69195421-69195440 | MS.gene75542:intron | 40.0% |
| !! | CAACCCTTGTTATTTGCCAA+TGG | - | chr3.1:69195419-69195438 | MS.gene75542:intron | 40.0% |
| !! | GGCATTGATTGCAATGATGT+TGG | - | chr3.1:69198078-69198097 | MS.gene75542:CDS | 40.0% |
| !! | GTCATCTTTTAGGAGATAGG+TGG | - | chr3.1:69196070-69196089 | MS.gene75542:intron | 40.0% |
| !!! | TATGCTTGGTTTTTGGCTTC+GGG | + | chr3.1:69195094-69195113 | None:intergenic | 40.0% |
| AGATTATACTACCTCCGTCC+CGG | + | chr3.1:69196367-69196386 | None:intergenic | 45.0% | |
| AGCAGAGATTGCTGTGAAAG+CGG | - | chr3.1:69194875-69194894 | MS.gene75542:intron | 45.0% | |
| ATGATGCATTGTGTGTGGCT+AGG | - | chr3.1:69196522-69196541 | MS.gene75542:intron | 45.0% | |
| ATGCATACCTGTTCTACACC+AGG | + | chr3.1:69196638-69196657 | None:intergenic | 45.0% | |
| ATGGCAAACATCACGACATC+AGG | + | chr3.1:69196979-69196998 | None:intergenic | 45.0% | |
| ATGTTGGCACCAATGACATG+AGG | - | chr3.1:69198094-69198113 | MS.gene75542:CDS | 45.0% | |
| ATTCAAGGCTGGCATCGTTA+GGG | - | chr3.1:69195902-69195921 | MS.gene75542:intron | 45.0% | |
| CAGATTCTCAACAGCAATCC+TGG | + | chr3.1:69194611-69194630 | None:intergenic | 45.0% | |
| CAGGACTATGAAATCGGTGA+TGG | - | chr3.1:69194478-69194497 | MS.gene75542:intron | 45.0% | |
| CCTGCCATTACCAAACAACA+AGG | + | chr3.1:69196464-69196483 | None:intergenic | 45.0% | |
| CTTCATCGTCAAAACCCCAT+TGG | + | chr3.1:69195438-69195457 | None:intergenic | 45.0% | |
| GAACTTGCCAGCTGTTAGAT+GGG | - | chr3.1:69195480-69195499 | MS.gene75542:intron | 45.0% | |
| GAATTTGACAAGACACGCAG+TGG | - | chr3.1:69197555-69197574 | MS.gene75542:intron | 45.0% | |
| GCTCTAATTGCATACTGCAG+AGG | + | chr3.1:69197810-69197829 | None:intergenic | 45.0% | |
| GGTCAATTAAATTGGGACGG+AGG | + | chr3.1:69196155-69196174 | None:intergenic | 45.0% | |
| TAGATACCCTGGTGTAGAAC+AGG | - | chr3.1:69196628-69196647 | MS.gene75542:intron | 45.0% | |
| TATTCAAGGCTGGCATCGTT+AGG | - | chr3.1:69195901-69195920 | MS.gene75542:intron | 45.0% | |
| TGACAGTGCCCTACTTAGAT+AGG | + | chr3.1:69195254-69195273 | None:intergenic | 45.0% | |
| TGCATACCTGTTCTACACCA+GGG | + | chr3.1:69196637-69196656 | None:intergenic | 45.0% | |
| TGGAGAAGTTTCAGACGTTG+AGG | - | chr3.1:69195132-69195151 | MS.gene75542:intron | 45.0% | |
| TGTTGGCACCAATGACATGA+GGG | - | chr3.1:69198095-69198114 | MS.gene75542:CDS | 45.0% | |
| TTGACTTTAACCTTGCCTGC+AGG | - | chr3.1:69198038-69198057 | MS.gene75542:CDS | 45.0% | |
| ! | AGTGAGGATTTTTCTCCTGC+AGG | + | chr3.1:69198056-69198075 | None:intergenic | 45.0% |
| ! | CACTGTCACTTGCTCTTTAC+TGG | - | chr3.1:69195266-69195285 | MS.gene75542:intron | 45.0% |
| ! | CAGGATTGCTGTTGAGAATC+TGG | - | chr3.1:69194609-69194628 | MS.gene75542:intron | 45.0% |
| ! | GAATGATGGAGCGACGATAT+TGG | - | chr3.1:69194399-69194418 | MS.gene75542:CDS | 45.0% |
| ! | GAGACCACTATTTTCCGCAA+GGG | + | chr3.1:69197865-69197884 | None:intergenic | 45.0% |
| ! | GTTTTGCTCCCTCATGTCAT+TGG | + | chr3.1:69198106-69198125 | None:intergenic | 45.0% |
| ! | TAGAGCATTTGGGGATGCTT+TGG | - | chr3.1:69197824-69197843 | MS.gene75542:CDS | 45.0% |
| ! | TTGCTGTTGCTGATCTAGAG+AGG | - | chr3.1:69194901-69194920 | MS.gene75542:intron | 45.0% |
| !! | AGGAAAGGTTGGTGGGAAAT+TGG | - | chr3.1:69194956-69194975 | MS.gene75542:intron | 45.0% |
| !! | CCTTGTTGTTTGGTAATGGC+AGG | - | chr3.1:69196461-69196480 | MS.gene75542:intron | 45.0% |
| !! | GAAATCGGTGATGGAACTAC+TGG | - | chr3.1:69194487-69194506 | MS.gene75542:intron | 45.0% |
| !! | GCTGCCTTGTTGTTTGGTAA+TGG | - | chr3.1:69196457-69196476 | MS.gene75542:intron | 45.0% |
| !! | TGCTTTGGAGTCGATTCCTA+TGG | - | chr3.1:69197839-69197858 | MS.gene75542:CDS | 45.0% |
| !!! | ATGCTTGGTTTTTGGCTTCG+GGG | + | chr3.1:69195093-69195112 | None:intergenic | 45.0% |
| AAGATGCTTCAAAGCCCCGA+CGG | - | chr3.1:69194240-69194259 | MS.gene75542:intron | 50.0% | |
| AATACGAGCGACGGCTTTAC+CGG | + | chr3.1:69194187-69194206 | None:intergenic | 50.0% | |
| AGCGACGATATTGGAGCAGA+TGG | - | chr3.1:69194408-69194427 | MS.gene75542:CDS | 50.0% | |
| AGGGAGTCTGCATGAGTCAT+GGG | - | chr3.1:69197325-69197344 | MS.gene75542:CDS | 50.0% | |
| ATGGCCCTTGCGGAAAATAG+TGG | - | chr3.1:69197858-69197877 | MS.gene75542:CDS | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr3.1:69196350-69196369 | MS.gene75542:CDS | 50.0% | |
| CAACCAGATTGCGAAGCTGA+TGG | - | chr3.1:69194438-69194457 | MS.gene75542:CDS | 50.0% | |
| CAGAAAGCTAACATCTCCGC+CGG | - | chr3.1:69194165-69194184 | MS.gene75542:CDS | 50.0% | |
| GAATCGAAGAACCGTCTTCG+TGG | - | chr3.1:69194132-69194151 | MS.gene75542:CDS | 50.0% | |
| GATTGCATGCTCTATTGCCG+TGG | - | chr3.1:69196592-69196611 | MS.gene75542:CDS | 50.0% | |
| GCAGTTAACTCCTGGAACCT+AGG | + | chr3.1:69195692-69195711 | None:intergenic | 50.0% | |
| GGAACTTGCCAGCTGTTAGA+TGG | - | chr3.1:69195479-69195498 | MS.gene75542:intron | 50.0% | |
| TGGCTTTCGATGAGTACGGA+AGG | - | chr3.1:69194085-69194104 | MS.gene75542:CDS | 50.0% | |
| TTGCCAGCTGTTAGATGGGT+TGG | - | chr3.1:69195484-69195503 | MS.gene75542:intron | 50.0% | |
| ! | AAGGGTATGAAATGGCGTCC+AGG | - | chr3.1:69194590-69194609 | MS.gene75542:intron | 50.0% |
| ! | ACATATGATGACGTCGCCGT+CGG | + | chr3.1:69194259-69194278 | None:intergenic | 50.0% |
| ! | ACTGGAGTAGTTGTGTTGGC+TGG | - | chr3.1:69194505-69194524 | MS.gene75542:intron | 50.0% |
| ! | CTATTTTCCGCAAGGGCCAT+AGG | + | chr3.1:69197858-69197877 | None:intergenic | 50.0% |
| ! | GGAGACCACTATTTTCCGCA+AGG | + | chr3.1:69197866-69197885 | None:intergenic | 50.0% |
| ! | GGATTTTTCTCCTGCAGGCA+AGG | + | chr3.1:69198051-69198070 | None:intergenic | 50.0% |
| !! | ATGGGTTGGTGGTGTTGAGT+TGG | - | chr3.1:69195498-69195517 | MS.gene75542:intron | 50.0% |
| !!! | CTGAGAGGCTTTTGGAACGT+GGG | - | chr3.1:69194545-69194564 | MS.gene75542:intron | 50.0% |
| !!! | TGCTTGGTTTTTGGCTTCGG+GGG | + | chr3.1:69195092-69195111 | None:intergenic | 50.0% |
| ATCCATACCCTTGGGACCGA+GGG | + | chr3.1:69194220-69194239 | None:intergenic | 55.0% | |
| CCACCAACCCATCTAACAGC+TGG | + | chr3.1:69195490-69195509 | None:intergenic | 55.0% | |
| CCACCATCAGCTTCGCAATC+TGG | + | chr3.1:69194444-69194463 | None:intergenic | 55.0% | |
| CCAGATTGCGAAGCTGATGG+TGG | - | chr3.1:69194441-69194460 | MS.gene75542:CDS | 55.0% | |
| CGTATTCTCCGTACCTCCCT+CGG | - | chr3.1:69194201-69194220 | MS.gene75542:CDS | 55.0% | |
| CTCTTCTCGAGCAAGCTGAG+AGG | - | chr3.1:69194530-69194549 | MS.gene75542:intron | 55.0% | |
| GAGGGAGTCTGCATGAGTCA+TGG | - | chr3.1:69197324-69197343 | MS.gene75542:CDS | 55.0% | |
| GGTACGGAGAATACGAGCGA+CGG | + | chr3.1:69194196-69194215 | None:intergenic | 55.0% | |
| TATCCATACCCTTGGGACCG+AGG | + | chr3.1:69194221-69194240 | None:intergenic | 55.0% | |
| TGCATGCTCTATTGCCGTGG+AGG | - | chr3.1:69196595-69196614 | MS.gene75542:CDS | 55.0% | |
| TTGGCTTCGGGGGCTCAAAT+GGG | + | chr3.1:69195082-69195101 | None:intergenic | 55.0% | |
| ! | ATATGATGACGTCGCCGTCG+GGG | + | chr3.1:69194257-69194276 | None:intergenic | 55.0% |
| ! | CATATGATGACGTCGCCGTC+GGG | + | chr3.1:69194258-69194277 | None:intergenic | 55.0% |
| ! | CGAGCAAGCTGAGAGGCTTT+TGG | - | chr3.1:69194537-69194556 | MS.gene75542:intron | 55.0% |
| ! | GTCGATTCCTATGGCCCTTG+CGG | - | chr3.1:69197848-69197867 | MS.gene75542:CDS | 55.0% |
| ! | TTTGGCTTCGGGGGCTCAAA+TGG | + | chr3.1:69195083-69195102 | None:intergenic | 55.0% |
| !! | AGCTGATGGTGGAGTTGTCG+AGG | - | chr3.1:69194452-69194471 | MS.gene75542:CDS | 55.0% |
| !! | CCAGCTGTTAGATGGGTTGG+TGG | - | chr3.1:69195487-69195506 | MS.gene75542:intron | 55.0% |
| !! | GAGCATCGAGACCACGAAGA+CGG | + | chr3.1:69194146-69194165 | None:intergenic | 55.0% |
| !! | GCGCTGGCTTTCGATGAGTA+CGG | - | chr3.1:69194081-69194100 | MS.gene75542:CDS | 55.0% |
| !!! | GCTGAGAGGCTTTTGGAACG+TGG | - | chr3.1:69194544-69194563 | MS.gene75542:intron | 55.0% |
| GCAGCTGCGGATAGATACCC+TGG | - | chr3.1:69196617-69196636 | MS.gene75542:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr3.1:69196353-69196372 | MS.gene75542:CDS | 60.0% | |
| GGTGGAGTTGTCGAGGAGTC+AGG | - | chr3.1:69194459-69194478 | MS.gene75542:CDS | 60.0% | |
| TATTGCCGTGGAGGCAGCTG+CGG | - | chr3.1:69196604-69196623 | MS.gene75542:CDS | 60.0% | |
| TCTATCCGCAGCTGCCTCCA+CGG | + | chr3.1:69196612-69196631 | None:intergenic | 60.0% | |
| ACGAGCGACGGCTTTACCGG+CGG | + | chr3.1:69194184-69194203 | None:intergenic | 65.0% | |
| CATACCCTTGGGACCGAGGG+AGG | + | chr3.1:69194217-69194236 | None:intergenic | 65.0% | |
| CCTTGGGACCGAGGGAGGTA+CGG | + | chr3.1:69194212-69194231 | None:intergenic | 65.0% | |
| CGTACCTCCCTCGGTCCCAA+GGG | - | chr3.1:69194210-69194229 | MS.gene75542:CDS | 65.0% | |
| CTCCCTCGGTCCCAAGGGTA+TGG | - | chr3.1:69194215-69194234 | MS.gene75542:CDS | 65.0% | |
| CCGTACCTCCCTCGGTCCCA+AGG | - | chr3.1:69194209-69194228 | MS.gene75542:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 69194078 | 69198230 | 69194078 | ID=MS.gene75542 |
| chr3.1 | mRNA | 69194078 | 69198230 | 69194078 | ID=MS.gene75542.t1;Parent=MS.gene75542 |
| chr3.1 | exon | 69198032 | 69198230 | 69198032 | ID=MS.gene75542.t1.exon1;Parent=MS.gene75542.t1 |
| chr3.1 | CDS | 69198032 | 69198230 | 69198032 | ID=cds.MS.gene75542.t1;Parent=MS.gene75542.t1 |
| chr3.1 | exon | 69197592 | 69197910 | 69197592 | ID=MS.gene75542.t1.exon2;Parent=MS.gene75542.t1 |
| chr3.1 | CDS | 69197592 | 69197910 | 69197592 | ID=cds.MS.gene75542.t1;Parent=MS.gene75542.t1 |
| chr3.1 | exon | 69197109 | 69197457 | 69197109 | ID=MS.gene75542.t1.exon3;Parent=MS.gene75542.t1 |
| chr3.1 | CDS | 69197109 | 69197457 | 69197109 | ID=cds.MS.gene75542.t1;Parent=MS.gene75542.t1 |
| chr3.1 | exon | 69196767 | 69196899 | 69196767 | ID=MS.gene75542.t1.exon4;Parent=MS.gene75542.t1 |
| chr3.1 | CDS | 69196767 | 69196899 | 69196767 | ID=cds.MS.gene75542.t1;Parent=MS.gene75542.t1 |
| chr3.1 | exon | 69196581 | 69196633 | 69196581 | ID=MS.gene75542.t1.exon5;Parent=MS.gene75542.t1 |
| chr3.1 | CDS | 69196581 | 69196633 | 69196581 | ID=cds.MS.gene75542.t1;Parent=MS.gene75542.t1 |
| chr3.1 | exon | 69196297 | 69196399 | 69196297 | ID=MS.gene75542.t1.exon6;Parent=MS.gene75542.t1 |
| chr3.1 | CDS | 69196297 | 69196399 | 69196297 | ID=cds.MS.gene75542.t1;Parent=MS.gene75542.t1 |
| chr3.1 | exon | 69195659 | 69195825 | 69195659 | ID=MS.gene75542.t1.exon7;Parent=MS.gene75542.t1 |
| chr3.1 | CDS | 69195659 | 69195825 | 69195659 | ID=cds.MS.gene75542.t1;Parent=MS.gene75542.t1 |
| chr3.1 | exon | 69194379 | 69194492 | 69194379 | ID=MS.gene75542.t1.exon8;Parent=MS.gene75542.t1 |
| chr3.1 | CDS | 69194379 | 69194492 | 69194379 | ID=cds.MS.gene75542.t1;Parent=MS.gene75542.t1 |
| chr3.1 | exon | 69194078 | 69194248 | 69194078 | ID=MS.gene75542.t1.exon9;Parent=MS.gene75542.t1 |
| chr3.1 | CDS | 69194078 | 69194248 | 69194078 | ID=cds.MS.gene75542.t1;Parent=MS.gene75542.t1 |
| Gene Sequence |
| Protein sequence |
