Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75800.t1 | XP_003618118.2 | 94 | 1003 | 36 | 7 | 3 | 984 | 2 | 1001 | 0.00E+00 | 1779.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75800.t1 | Q9HGL2 | 28.0 | 414 | 226 | 12 | 4 | 415 | 2 | 345 | 2.7e-18 | 95.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75800.t1 | G7KFG0 | 94.0 | 1003 | 36 | 7 | 3 | 984 | 2 | 1001 | 0.0e+00 | 1779.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75800 | MS.gene023295 | PPI |
| MS.gene75800 | MS.gene071439 | PPI |
| MS.gene75800 | MS.gene08324 | PPI |
| MS.gene75800 | MS.gene34936 | PPI |
| MS.gene75800 | MS.gene071438 | PPI |
| MS.gene75800 | MS.gene071437 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75800.t1 | MTR_5g099170 | 94.018 | 1003 | 36 | 7 | 3 | 984 | 2 | 1001 | 0.0 | 1835 |
| MS.gene75800.t1 | MTR_1g018480 | 78.822 | 798 | 106 | 8 | 188 | 984 | 28 | 763 | 0.0 | 1218 |
| MS.gene75800.t1 | MTR_3g115640 | 41.844 | 846 | 427 | 19 | 115 | 947 | 271 | 1064 | 1.68e-174 | 540 |
| MS.gene75800.t1 | MTR_3g115640 | 75.490 | 102 | 25 | 0 | 10 | 111 | 5 | 106 | 3.69e-41 | 165 |
| MS.gene75800.t1 | MTR_4g132840 | 39.326 | 89 | 54 | 0 | 6 | 94 | 10 | 98 | 6.80e-13 | 72.8 |
| MS.gene75800.t1 | MTR_3g054130 | 37.079 | 89 | 56 | 0 | 6 | 94 | 13 | 101 | 1.99e-12 | 71.2 |
| MS.gene75800.t1 | MTR_2g025180 | 42.500 | 80 | 46 | 0 | 15 | 94 | 14 | 93 | 2.36e-12 | 71.2 |
| MS.gene75800.t1 | MTR_5g093720 | 36.782 | 87 | 55 | 0 | 6 | 92 | 10 | 96 | 1.50e-11 | 68.2 |
| MS.gene75800.t1 | MTR_5g093720 | 37.647 | 85 | 53 | 0 | 6 | 90 | 10 | 94 | 1.92e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75800.t1 | AT1G21630 | 44.353 | 1089 | 436 | 34 | 13 | 980 | 11 | 1050 | 0.0 | 693 |
| MS.gene75800.t1 | AT1G21630 | 45.717 | 1004 | 392 | 28 | 13 | 903 | 11 | 974 | 0.0 | 690 |
| MS.gene75800.t1 | AT1G20760 | 42.502 | 1087 | 440 | 33 | 10 | 984 | 6 | 1019 | 0.0 | 678 |
| MS.gene75800.t1 | AT1G21630 | 43.164 | 1119 | 435 | 36 | 13 | 980 | 11 | 1079 | 0.0 | 676 |
| MS.gene75800.t1 | AT1G21630 | 44.391 | 1034 | 391 | 30 | 13 | 903 | 11 | 1003 | 0.0 | 673 |
| MS.gene75800.t1 | AT4G05520 | 40.741 | 81 | 48 | 0 | 14 | 94 | 19 | 99 | 2.47e-13 | 74.3 |
| MS.gene75800.t1 | AT4G05520 | 40.741 | 81 | 48 | 0 | 14 | 94 | 19 | 99 | 2.58e-13 | 74.3 |
| MS.gene75800.t1 | AT3G20290 | 38.202 | 89 | 55 | 0 | 2 | 90 | 6 | 94 | 4.90e-13 | 73.6 |
| MS.gene75800.t1 | AT3G20290 | 38.202 | 89 | 55 | 0 | 2 | 90 | 6 | 94 | 4.90e-13 | 73.6 |
| MS.gene75800.t1 | AT3G20290 | 38.202 | 89 | 55 | 0 | 2 | 90 | 6 | 94 | 4.90e-13 | 73.6 |
Find 260 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCCAAGACTGGAATTT+TGG | 0.083383 | 5.3:-80451406 | None:intergenic |
| TTAGGCGACGCTACAAATTT+TGG | 0.153429 | 5.3:-80455784 | None:intergenic |
| TCTGCCATTGTTCCTGTATC+TGG | 0.185414 | 5.3:+80450469 | MS.gene75800:CDS |
| AACTGAATCCACTGGTCTTC+TGG | 0.214249 | 5.3:-80459220 | None:intergenic |
| CCCAATCAGCAGCTCCTTCT+TGG | 0.235708 | 5.3:-80454299 | None:intergenic |
| GACAACTATTTCTTTAGTTC+TGG | 0.248675 | 5.3:+80459143 | MS.gene75800:CDS |
| CCAGATGAAGTGGGCATATT+AGG | 0.254876 | 5.3:-80450625 | None:intergenic |
| CTAGAAAAGGATCTGATAAT+TGG | 0.254950 | 5.3:+80459513 | MS.gene75800:CDS |
| ATGATGATATTGATTCAGTT+TGG | 0.264630 | 5.3:+80457848 | MS.gene75800:CDS |
| GACTCGGATCCCTTTGGCTC+TGG | 0.272802 | 5.3:+80459458 | MS.gene75800:CDS |
| TGCTCTCTCTCAGAGAGTTT+TGG | 0.274800 | 5.3:+80451021 | MS.gene75800:CDS |
| GTGTCAAAGGTTCCCCAATT+AGG | 0.276461 | 5.3:-80457823 | None:intergenic |
| TCTGATTTATCATCACTCTT+AGG | 0.279359 | 5.3:-80455802 | None:intergenic |
| GCAGCTTCCTCTGCCTTCCC+TGG | 0.282754 | 5.3:+80450211 | MS.gene75800:CDS |
| AATGCAGCTTTAACCATTTC+AGG | 0.285045 | 5.3:-80449992 | None:intergenic |
| ATATCAGGAAGAATGTTATT+TGG | 0.285131 | 5.3:-80451101 | None:intergenic |
| ATCCTTGTGGAGAATTGTTT+TGG | 0.291045 | 5.3:-80450441 | None:intergenic |
| CTTGCGCATCATCTTGATTA+CGG | 0.292981 | 5.3:-80456002 | None:intergenic |
| CTTTCTGATGAAGTCCTAAA+AGG | 0.307251 | 5.3:-80459482 | None:intergenic |
| TGATGATATTGATTCAGTTT+GGG | 0.312070 | 5.3:+80457849 | MS.gene75800:CDS |
| CCTAATATGCCCACTTCATC+TGG | 0.322984 | 5.3:+80450625 | MS.gene75800:CDS |
| TTGCGCATCATCTTGATTAC+GGG | 0.327200 | 5.3:-80456001 | None:intergenic |
| ACCAGTCCTTAGGCCTTTGC+GGG | 0.342679 | 5.3:-80459289 | None:intergenic |
| GAAATATACAAGAGTATTCA+TGG | 0.344953 | 5.3:+80450726 | MS.gene75800:CDS |
| TGGACTTCCAGTTAGATTGC+AGG | 0.345688 | 5.3:+80450645 | MS.gene75800:CDS |
| CCAGTAGTCGTGGGTATATC+AGG | 0.346839 | 5.3:-80451116 | None:intergenic |
| GAACCAGCATGCCTCGGTTC+AGG | 0.352210 | 5.3:+80450600 | MS.gene75800:CDS |
| CTGCTTGCAAATGGACTATT+AGG | 0.353285 | 5.3:-80455907 | None:intergenic |
| CCTCCCTGTGTCGCTCCATT+AGG | 0.353651 | 5.3:-80451055 | None:intergenic |
| GGTCCCCTTGGTCCAAGATT+TGG | 0.355694 | 5.3:-80450091 | None:intergenic |
| AGTGAGGTCTGCAAAGAATC+AGG | 0.355697 | 5.3:-80450523 | None:intergenic |
| ACATCAGTCTGAGTCATTCT+TGG | 0.356881 | 5.3:-80450700 | None:intergenic |
| AATGAACGGTGCAAGAAGTA+TGG | 0.359913 | 5.3:+80453271 | MS.gene75800:CDS |
| ACCTCAGACTACAAATGAAC+AGG | 0.361971 | 5.3:+80455828 | MS.gene75800:CDS |
| GGCTGTGAACGCAAAAGCTT+TGG | 0.363833 | 5.3:+80455750 | MS.gene75800:CDS |
| CAATTCTGACTTTGATGAAC+TGG | 0.368165 | 5.3:+80453237 | MS.gene75800:CDS |
| TTATTTCCGTCGTGCCGATT+TGG | 0.368421 | 5.3:+80449622 | MS.gene75800:CDS |
| GACTGATTTCCCCAAGTTAC+GGG | 0.369318 | 5.3:-80451161 | None:intergenic |
| CGAGGAACTTGTTTCTTAGT+TGG | 0.370132 | 5.3:+80450791 | MS.gene75800:CDS |
| TCCTCTCAGCTACCAGTTAG+AGG | 0.375266 | 5.3:+80450259 | MS.gene75800:CDS |
| CTACCCACTCAAGGACTTCC+TGG | 0.376304 | 5.3:+80450178 | MS.gene75800:CDS |
| CCATCCGCTGCACCAAATCT+TGG | 0.376317 | 5.3:+80450079 | MS.gene75800:CDS |
| ACAGAATCCTGCAATCTAAC+TGG | 0.385097 | 5.3:-80450652 | None:intergenic |
| CCAAGATTTGGTGCAGCGGA+TGG | 0.387842 | 5.3:-80450079 | None:intergenic |
| TTGGATTGCACTGTACCTAA+TGG | 0.391952 | 5.3:+80451040 | MS.gene75800:CDS |
| TCCTCTGCCTTCCCTGGGTA+TGG | 0.392175 | 5.3:+80450217 | MS.gene75800:CDS |
| GAAGCTGCAGGGCGAGGTCC+AGG | 0.393251 | 5.3:-80450196 | None:intergenic |
| AGTAAGCCATCTGATACTTC+TGG | 0.396585 | 5.3:+80450349 | MS.gene75800:CDS |
| AGAACTTGAGAAAGAAATAG+TGG | 0.397031 | 5.3:+80451890 | MS.gene75800:CDS |
| ATCTCCACAGTCCCGTAACT+TGG | 0.397428 | 5.3:+80451150 | MS.gene75800:CDS |
| AAGATTTGGTGCAGCGGATG+GGG | 0.399779 | 5.3:-80450077 | None:intergenic |
| CAAGATTTGGTGCAGCGGAT+GGG | 0.401111 | 5.3:-80450078 | None:intergenic |
| AACCAGTCCTTAGGCCTTTG+CGG | 0.408355 | 5.3:-80459290 | None:intergenic |
| TTTCTTTAGTTCTGGAGACC+TGG | 0.408705 | 5.3:+80459151 | MS.gene75800:CDS |
| TGGGAAAATCACCGGGGAAC+AGG | 0.411070 | 5.3:+80450768 | MS.gene75800:CDS |
| TTTGATGACTCGGATCCCTT+TGG | 0.411828 | 5.3:+80459452 | MS.gene75800:CDS |
| GGAGGGACAGCAGCCGGCCT+TGG | 0.413740 | 5.3:-80451348 | None:intergenic |
| ACTCGGATCCCTTTGGCTCT+GGG | 0.413782 | 5.3:+80459459 | MS.gene75800:CDS |
| CCAAGAAGGAGCTGCTGATT+GGG | 0.414207 | 5.3:+80454299 | MS.gene75800:CDS |
| GAGGGAGCCAGAGTTCTATT+AGG | 0.415142 | 5.3:+80450491 | MS.gene75800:CDS |
| GGCTTCCTCCGTTGTCAACT+TGG | 0.415490 | 5.3:-80452920 | None:intergenic |
| TCTGACATTCGAAAGACTTC+CGG | 0.415671 | 5.3:+80455964 | MS.gene75800:CDS |
| TGGGATAAGCTTGAAGATAA+AGG | 0.418203 | 5.3:+80454330 | MS.gene75800:CDS |
| CCCTGTTCATTTGTAGTCTG+AGG | 0.423333 | 5.3:-80455829 | None:intergenic |
| TGCTGATTGGGATGAGGATT+GGG | 0.423748 | 5.3:+80454311 | MS.gene75800:CDS |
| TTACAGGAGAGAGAGCTTGA+TGG | 0.424029 | 5.3:+80459113 | MS.gene75800:intron |
| CTTGGTGGCCGACCTGCTGT+AGG | 0.424041 | 5.3:-80451330 | None:intergenic |
| GTTTATAACAAAAGTGATGA+TGG | 0.425078 | 5.3:+80455868 | MS.gene75800:CDS |
| CTGCTGATTGGGATGAGGAT+TGG | 0.428599 | 5.3:+80454310 | MS.gene75800:CDS |
| GTCTCTTTCTTCCAAGGCTC+CGG | 0.431818 | 5.3:+80449677 | MS.gene75800:CDS |
| GGGACAGCAGCCGGCCTTGG+TGG | 0.433007 | 5.3:-80451345 | None:intergenic |
| TCCAAGAAGGAGCTGCTGAT+TGG | 0.435562 | 5.3:+80454298 | MS.gene75800:CDS |
| GAAATCCAAAATTCCAGTCT+TGG | 0.436376 | 5.3:+80451401 | MS.gene75800:CDS |
| AGCAGGTCGGCCACCAAGGC+CGG | 0.439433 | 5.3:+80451335 | MS.gene75800:CDS |
| TGACTGATTTCCCCAAGTTA+CGG | 0.443430 | 5.3:-80451162 | None:intergenic |
| GCGCGAACTCACTCCTGAAA+TGG | 0.448079 | 5.3:+80449979 | MS.gene75800:CDS |
| TTCTTTAGTTCTGGAGACCT+GGG | 0.448365 | 5.3:+80459152 | MS.gene75800:CDS |
| CTCTGGCTCCCTCCAGATAC+AGG | 0.448704 | 5.3:-80450481 | None:intergenic |
| TGCAAAGCCCACGACATTAG+TGG | 0.449716 | 5.3:+80453300 | MS.gene75800:CDS |
| GAAGATAAATATAAGCAAGT+TGG | 0.450494 | 5.3:+80452886 | MS.gene75800:CDS |
| TCATTCTTGGCCATGGAGAT+TGG | 0.452820 | 5.3:-80450687 | None:intergenic |
| GATCTGAGGAGCAGGAATCT+TGG | 0.456306 | 5.3:-80450032 | None:intergenic |
| ACGGGACTAGTTCCTCTAAC+TGG | 0.457103 | 5.3:-80450271 | None:intergenic |
| AGATTGCAGGATTCTGTGTC+AGG | 0.460277 | 5.3:+80450658 | MS.gene75800:CDS |
| GAAAGTCAAACTCCTAGAAA+AGG | 0.462697 | 5.3:+80459500 | MS.gene75800:CDS |
| CAGCTTCCTCTGCCTTCCCT+GGG | 0.463100 | 5.3:+80450212 | MS.gene75800:CDS |
| ATGTTATTTGGAAGTATACT+TGG | 0.465197 | 5.3:-80451089 | None:intergenic |
| GCAGATGTTGTAATTGCAAC+GGG | 0.468123 | 5.3:-80450289 | None:intergenic |
| GCAGAGGAAGCTGCAGGGCG+AGG | 0.469441 | 5.3:-80450202 | None:intergenic |
| GGGAAGGCAGAGGAAGCTGC+AGG | 0.470047 | 5.3:-80450208 | None:intergenic |
| GAGCTGAAAAGTGGGGTGCT+TGG | 0.470554 | 5.3:-80459257 | None:intergenic |
| ATACCAAGGGATTGTCAAGT+TGG | 0.472782 | 5.3:+80453082 | MS.gene75800:CDS |
| GGTGGTTGTGCTTCCCGAGC+AGG | 0.473964 | 5.3:-80459374 | None:intergenic |
| AGGGATTGTCAAGTTGGAAC+AGG | 0.474706 | 5.3:+80453088 | MS.gene75800:CDS |
| TCTCCACAGTCCCGTAACTT+GGG | 0.476223 | 5.3:+80451151 | MS.gene75800:CDS |
| ATGAGATGCTTCTCCAAGAC+TGG | 0.476986 | 5.3:-80451414 | None:intergenic |
| AATATCATCATTTGTGTCAA+AGG | 0.479869 | 5.3:-80457836 | None:intergenic |
| AGCAACAGAAGCTGATAAGA+AGG | 0.481859 | 5.3:+80451488 | MS.gene75800:CDS |
| GGTTCTGATTCACTGCCGGC+TGG | 0.483197 | 5.3:-80450582 | None:intergenic |
| CCTGATATACCCACGACTAC+TGG | 0.485235 | 5.3:+80451116 | MS.gene75800:CDS |
| CATCAAGGGATGACTGGATC+TGG | 0.485293 | 5.3:+80451291 | MS.gene75800:CDS |
| TCAGATGGAGGGACAGCAGC+CGG | 0.485842 | 5.3:-80451354 | None:intergenic |
| GCAAAATTGATCTGAGGAGC+AGG | 0.486606 | 5.3:-80450040 | None:intergenic |
| TAGTGTATCTTTACCTGCTC+GGG | 0.487693 | 5.3:+80459361 | MS.gene75800:CDS |
| GCATCGAACAGATCCACATT+AGG | 0.489829 | 5.3:-80449599 | None:intergenic |
| GAGAGAGAGCTTGATGGAGC+TGG | 0.490771 | 5.3:+80459119 | MS.gene75800:CDS |
| CGGCTTCGACACCGCTGATA+CGG | 0.491132 | 5.3:-80449655 | None:intergenic |
| ACATTAGTGGAGCTACCCTT+TGG | 0.492253 | 5.3:+80453313 | MS.gene75800:CDS |
| GTCTGAGTCATTCTTGGCCA+TGG | 0.492406 | 5.3:-80450694 | None:intergenic |
| AAGTCCTTGAGTGGGTAGAC+TGG | 0.493318 | 5.3:-80450173 | None:intergenic |
| CAATCGTCTTAACGAGATCA+TGG | 0.493342 | 5.3:+80452732 | MS.gene75800:CDS |
| ACAAATCAGAGTGGTTTCCT+AGG | 0.493644 | 5.3:+80449905 | MS.gene75800:CDS |
| CTCAGCCAACTCCATTAGTA+AGG | 0.494821 | 5.3:+80450131 | MS.gene75800:CDS |
| TGATTTGGAAGAGGTCCCCT+TGG | 0.497681 | 5.3:-80450103 | None:intergenic |
| GCAGGAATCTTGGAAGCAGC+TGG | 0.500240 | 5.3:-80450022 | None:intergenic |
| CCGATAGTACTGCTTGCAAA+TGG | 0.504423 | 5.3:-80455916 | None:intergenic |
| AAGTAGACAGAGATAGAGAT+GGG | 0.506112 | 5.3:+80450749 | MS.gene75800:CDS |
| GTAACTTGGGGAAATCAGTC+AGG | 0.510887 | 5.3:+80451164 | MS.gene75800:CDS |
| AAAGGTGTTCAACAACATCA+AGG | 0.512816 | 5.3:+80451276 | MS.gene75800:intron |
| ACGGCCGTCACGATCCAAAT+CGG | 0.514554 | 5.3:-80449636 | None:intergenic |
| CAATTCCCCGCAAAGGCCTA+AGG | 0.515130 | 5.3:+80459283 | MS.gene75800:CDS |
| AGCCACATTCCGTGACATAC+AGG | 0.515862 | 5.3:+80452939 | MS.gene75800:CDS |
| CAACAACATCAAGGGATGAC+TGG | 0.516067 | 5.3:+80451285 | MS.gene75800:CDS |
| GCCATTGTTCCTGTATCTGG+AGG | 0.518118 | 5.3:+80450472 | MS.gene75800:CDS |
| TGCTGGTTCTGATTCACTGC+CGG | 0.518194 | 5.3:-80450586 | None:intergenic |
| TGGTGGTCCTAATAGAACTC+TGG | 0.519340 | 5.3:-80450498 | None:intergenic |
| GAATTGCTTGAGCTGAAAAG+TGG | 0.520785 | 5.3:-80459266 | None:intergenic |
| GCAGCTCCTTCTTGGATACC+AGG | 0.522331 | 5.3:-80454291 | None:intergenic |
| GATAGAGATGGGAAAATCAC+CGG | 0.522378 | 5.3:+80450760 | MS.gene75800:CDS |
| TATCATTATCTTGATCAGAT+AGG | 0.525293 | 5.3:-80450995 | None:intergenic |
| CAAGTTCCTCGCCTGTTCCC+CGG | 0.525330 | 5.3:-80450779 | None:intergenic |
| GGCTGGTTCTGCTGAAGATG+TGG | 0.527341 | 5.3:-80450565 | None:intergenic |
| GATGATATTGATTCAGTTTG+GGG | 0.529758 | 5.3:+80457850 | MS.gene75800:CDS |
| TTCGCGCTTGCTCTGTGCGA+CGG | 0.531747 | 5.3:-80449963 | None:intergenic |
| CCATCTGATACTTCTGGCAA+TGG | 0.531884 | 5.3:+80450355 | MS.gene75800:CDS |
| ATAGTGTATCTTTACCTGCT+CGG | 0.533725 | 5.3:+80459360 | MS.gene75800:CDS |
| ACGGGACTGTGGAGATTGAC+AGG | 0.534564 | 5.3:-80451143 | None:intergenic |
| GAAGCCGTCTCTTTCTTCCA+AGG | 0.535408 | 5.3:+80449671 | MS.gene75800:CDS |
| GCGCCTGAACCGAGGCATGC+TGG | 0.535855 | 5.3:-80450603 | None:intergenic |
| AACTGGAAGTCCAGATGAAG+TGG | 0.536635 | 5.3:-80450635 | None:intergenic |
| CCTAAAAGGCCCAGAGCCAA+AGG | 0.538643 | 5.3:-80459468 | None:intergenic |
| CGGACAGAATCAAATCGTAC+TGG | 0.538647 | 5.3:-80459395 | None:intergenic |
| GTTCCAACTTGACAATCCCT+TGG | 0.538804 | 5.3:-80453085 | None:intergenic |
| TGTACCTAATGGAGCGACAC+AGG | 0.539980 | 5.3:+80451051 | MS.gene75800:CDS |
| CGAGGCATGTTGCCATACCC+AGG | 0.540224 | 5.3:-80450229 | None:intergenic |
| GCTGTCCCTCCATCTGATGA+AGG | 0.542889 | 5.3:+80451360 | MS.gene75800:CDS |
| ATGGTTAAAGCTGCATTGTA+TGG | 0.543633 | 5.3:+80449998 | MS.gene75800:CDS |
| CACCTGTATGTCACGGAATG+TGG | 0.543777 | 5.3:-80452941 | None:intergenic |
| TACTATCGGAAGTCCGCATA+GGG | 0.544690 | 5.3:+80455930 | MS.gene75800:CDS |
| GAAGTAGACAGAGATAGAGA+TGG | 0.545228 | 5.3:+80450748 | MS.gene75800:CDS |
| TTGGTTAGGCTGAGATGAGG+TGG | 0.547246 | 5.3:-80450422 | None:intergenic |
| CGTTAAGACGATTGTCGCAT+CGG | 0.548638 | 5.3:-80452723 | None:intergenic |
| AGCAGATGAAGTAGGTGCGA+GGG | 0.552013 | 5.3:-80450326 | None:intergenic |
| CTGCAAAGAATCAGGGGTGG+TGG | 0.555519 | 5.3:-80450515 | None:intergenic |
| ATCATCAAAACTGAATCCAC+TGG | 0.556026 | 5.3:-80459228 | None:intergenic |
| TTGGTGGCCGACCTGCTGTA+GGG | 0.556959 | 5.3:-80451329 | None:intergenic |
| GTGAGGTCTGCAAAGAATCA+GGG | 0.561557 | 5.3:-80450522 | None:intergenic |
| CCCCGCAAAGGCCTAAGGAC+TGG | 0.561681 | 5.3:+80459288 | MS.gene75800:CDS |
| AATTGCTTGAGCTGAAAAGT+GGG | 0.564157 | 5.3:-80459265 | None:intergenic |
| CTGCACCAAATCTTGGACCA+AGG | 0.564231 | 5.3:+80450086 | MS.gene75800:CDS |
| GAGTTCCTTCATCAGATGGA+GGG | 0.565966 | 5.3:-80451365 | None:intergenic |
| AGCAGATGTTGTAATTGCAA+CGG | 0.567076 | 5.3:-80450290 | None:intergenic |
| AGAGGCCTTACTAATGGAGT+TGG | 0.567196 | 5.3:-80450136 | None:intergenic |
| TTTCTTGCACCTGTATGTCA+CGG | 0.569492 | 5.3:-80452948 | None:intergenic |
| GCAAAGGCCTAAGGACTGGT+TGG | 0.571718 | 5.3:+80459292 | MS.gene75800:CDS |
| AAATCACCGGGGAACAGGCG+AGG | 0.571813 | 5.3:+80450773 | MS.gene75800:CDS |
| GGGTAGCTCCACTAATGTCG+TGG | 0.572123 | 5.3:-80453308 | None:intergenic |
| TTTATAACAAAAGTGATGAT+GGG | 0.572887 | 5.3:+80455869 | MS.gene75800:CDS |
| TGCACCAAATCTTGGACCAA+GGG | 0.573715 | 5.3:+80450087 | MS.gene75800:CDS |
| CCATTTGCAAGCAGTACTAT+CGG | 0.574980 | 5.3:+80455916 | MS.gene75800:CDS |
| CTAAAAGGCCCAGAGCCAAA+GGG | 0.576310 | 5.3:-80459467 | None:intergenic |
| AAATACTGATGACACTGTAC+AGG | 0.576435 | 5.3:+80453115 | MS.gene75800:CDS |
| AGATTTGGTGCAGCGGATGG+GGG | 0.577211 | 5.3:-80450076 | None:intergenic |
| TGTAGAACTCTGCACGACCT+AGG | 0.577556 | 5.3:-80449922 | None:intergenic |
| AGGAGCTGCTGATTGGGATG+AGG | 0.578287 | 5.3:+80454305 | MS.gene75800:CDS |
| TGAGTTCCTTCATCAGATGG+AGG | 0.578889 | 5.3:-80451366 | None:intergenic |
| TCTTGCATATGCAGTGATCA+TGG | 0.583093 | 5.3:+80457757 | MS.gene75800:intron |
| GTACTATCGGAAGTCCGCAT+AGG | 0.583487 | 5.3:+80455929 | MS.gene75800:CDS |
| AATCCTTTAGGCTGGCAACC+TGG | 0.583706 | 5.3:+80454273 | MS.gene75800:intron |
| ACGGGGTGAGCTATCTTCAC+CGG | 0.584518 | 5.3:-80455983 | None:intergenic |
| GACAGGTTGACCAGTAGTCG+TGG | 0.586566 | 5.3:-80451126 | None:intergenic |
| CCATTGTTCCTGTATCTGGA+GGG | 0.588409 | 5.3:+80450473 | MS.gene75800:CDS |
| TACCTCCTTAGTGATGCTAC+TGG | 0.590533 | 5.3:-80457881 | None:intergenic |
| ATAGAGATGGGAAAATCACC+GGG | 0.590747 | 5.3:+80450761 | MS.gene75800:CDS |
| CGACAACTCAACCCTACAGC+AGG | 0.591099 | 5.3:+80451318 | MS.gene75800:CDS |
| CAATGCCAGTAGCATCACTA+AGG | 0.592229 | 5.3:+80457876 | MS.gene75800:CDS |
| GTCGTCGTCAGCGCCTAATG+TGG | 0.592825 | 5.3:+80449586 | MS.gene75800:CDS |
| GATCAAAATCCGCACTGCTG+CGG | 0.595149 | 5.3:-80459415 | None:intergenic |
| GGTGAGCTCTGACCTGAGCA+AGG | 0.596646 | 5.3:-80449715 | None:intergenic |
| CCTCAGACTACAAATGAACA+GGG | 0.596661 | 5.3:+80455829 | MS.gene75800:CDS |
| GAATCAGAACCAGCATGCCT+CGG | 0.597210 | 5.3:+80450594 | MS.gene75800:CDS |
| ACATCTTCAGCAGAACCAGC+CGG | 0.598425 | 5.3:+80450567 | MS.gene75800:CDS |
| CATTAAAACATCTTCACCAC+AGG | 0.599364 | 5.3:+80459184 | MS.gene75800:CDS |
| TTCCCCAAGTTACGGGACTG+TGG | 0.600739 | 5.3:-80451154 | None:intergenic |
| AAAAGATTGAATTATACCAA+GGG | 0.601242 | 5.3:+80453069 | MS.gene75800:CDS |
| CCCTCCAGATACAGGAACAA+TGG | 0.601366 | 5.3:-80450473 | None:intergenic |
| GCCATACCCAGGGAAGGCAG+AGG | 0.602262 | 5.3:-80450218 | None:intergenic |
| GGCTTACTAGCAGATGAAGT+AGG | 0.608782 | 5.3:-80450334 | None:intergenic |
| GGATCCGAGTCATCAAAAGC+AGG | 0.609531 | 5.3:-80459446 | None:intergenic |
| CTACAGCAGGTCGGCCACCA+AGG | 0.611350 | 5.3:+80451331 | MS.gene75800:CDS |
| TGGCAACCTGGTATCCAAGA+AGG | 0.611414 | 5.3:+80454285 | MS.gene75800:CDS |
| CAGGTCAGCACCAATCTCCA+TGG | 0.614703 | 5.3:+80450677 | MS.gene75800:CDS |
| GGAAGGCAGAGGAAGCTGCA+GGG | 0.615609 | 5.3:-80450207 | None:intergenic |
| TGCGCATCATCTTGATTACG+GGG | 0.616560 | 5.3:-80456000 | None:intergenic |
| TGGTCAAATCTCTAAATGAA+CGG | 0.619830 | 5.3:+80453257 | MS.gene75800:CDS |
| TCTGCCAGTCTACCCACTCA+AGG | 0.620326 | 5.3:+80450169 | MS.gene75800:CDS |
| CTCCACAGTCCCGTAACTTG+GGG | 0.620807 | 5.3:+80451152 | MS.gene75800:CDS |
| AACAGAGTGAGTAGCAAGTG+AGG | 0.625475 | 5.3:-80450539 | None:intergenic |
| AAGGTGTTCAACAACATCAA+GGG | 0.626189 | 5.3:+80451277 | MS.gene75800:intron |
| ACTACAAATGAACAGGGAGT+AGG | 0.626388 | 5.3:+80455835 | MS.gene75800:CDS |
| CCATTGCCAGAAGTATCAGA+TGG | 0.628156 | 5.3:-80450355 | None:intergenic |
| GCTCAAGCAATTCCCCGCAA+AGG | 0.628792 | 5.3:+80459276 | MS.gene75800:CDS |
| CATATTAGGCGCCTGAACCG+AGG | 0.630352 | 5.3:-80450611 | None:intergenic |
| GGTAGCTCCACTAATGTCGT+GGG | 0.630673 | 5.3:-80453307 | None:intergenic |
| GATCTCTTCCAGAAGACCAG+TGG | 0.630983 | 5.3:+80459212 | MS.gene75800:CDS |
| TGGTCCAAGATTTGGTGCAG+CGG | 0.631998 | 5.3:-80450083 | None:intergenic |
| GTACCTAATGGAGCGACACA+GGG | 0.632242 | 5.3:+80451052 | MS.gene75800:CDS |
| TCCAAAACAAAAGCAACCAA+AGG | 0.634034 | 5.3:+80455729 | MS.gene75800:CDS |
| AGGTCCAGGAAGTCCTTGAG+TGG | 0.634645 | 5.3:-80450182 | None:intergenic |
| TGGAAGAGATCAGCAGCCTG+TGG | 0.635908 | 5.3:-80459200 | None:intergenic |
| TGCCAGTAGCATCACTAAGG+AGG | 0.638921 | 5.3:+80457879 | MS.gene75800:CDS |
| GATCGTGACGGCCGTATCAG+CGG | 0.640276 | 5.3:+80449644 | MS.gene75800:CDS |
| CATGTTGCCATACCCAGGGA+AGG | 0.641769 | 5.3:-80450224 | None:intergenic |
| ATGGCAGATGAAAATCCTTG+TGG | 0.642661 | 5.3:-80450454 | None:intergenic |
| CTTAGTTGGCAATTACCAAG+AGG | 0.644602 | 5.3:+80450805 | MS.gene75800:CDS |
| GAGGCATGTTGCCATACCCA+GGG | 0.650186 | 5.3:-80450228 | None:intergenic |
| CTAATGGAGCGACACAGGGA+GGG | 0.650249 | 5.3:+80451056 | MS.gene75800:CDS |
| GATATCTGCTGATAAACATG+AGG | 0.651388 | 5.3:+80452759 | MS.gene75800:CDS |
| TAGCAGATGAAGTAGGTGCG+AGG | 0.652888 | 5.3:-80450327 | None:intergenic |
| CGTGCCGATTTGGATCGTGA+CGG | 0.655206 | 5.3:+80449632 | MS.gene75800:CDS |
| AACCAAAACAATTCTCCACA+AGG | 0.655827 | 5.3:+80450439 | MS.gene75800:CDS |
| CAGAATTGATGCGATCAGCA+CGG | 0.657300 | 5.3:-80453222 | None:intergenic |
| GTGGCAGCAAAATTGATCTG+AGG | 0.657933 | 5.3:-80450046 | None:intergenic |
| AATGAACAGGGAGTAGGCAA+CGG | 0.658714 | 5.3:+80455841 | MS.gene75800:CDS |
| TCCTCTAACTGGTAGCTGAG+AGG | 0.659362 | 5.3:-80450260 | None:intergenic |
| ACAGGTTGACCAGTAGTCGT+GGG | 0.659671 | 5.3:-80451125 | None:intergenic |
| GGTCCAGGAAGTCCTTGAGT+GGG | 0.661646 | 5.3:-80450181 | None:intergenic |
| TGAGGTCTGCAAAGAATCAG+GGG | 0.662290 | 5.3:-80450521 | None:intergenic |
| ACAGAATCAAATCGTACTGG+TGG | 0.662330 | 5.3:-80459392 | None:intergenic |
| GGAGCCTTGGAAGAAAGAGA+CGG | 0.664365 | 5.3:-80449675 | None:intergenic |
| GCAGATGAAGTAGGTGCGAG+GGG | 0.665000 | 5.3:-80450325 | None:intergenic |
| TGATTCTGTCCGCAGCAGTG+CGG | 0.668650 | 5.3:+80459406 | MS.gene75800:CDS |
| CACGATCCAAATCGGCACGA+CGG | 0.668945 | 5.3:-80449628 | None:intergenic |
| CCAGTCCTTAGGCCTTTGCG+GGG | 0.670167 | 5.3:-80459288 | None:intergenic |
| GCACCAAATCTTGGACCAAG+GGG | 0.671748 | 5.3:+80450088 | MS.gene75800:CDS |
| TTTGCAAACACAAATCAGAG+TGG | 0.673304 | 5.3:+80449896 | MS.gene75800:CDS |
| GTCTTAACGAGATCATGGAA+AGG | 0.674758 | 5.3:+80452737 | MS.gene75800:CDS |
| ATGATGCGCAAGAAACCCAA+AGG | 0.676390 | 5.3:+80456013 | MS.gene75800:CDS |
| TGTATCATCCAAGTTGACAA+CGG | 0.678444 | 5.3:+80452912 | MS.gene75800:CDS |
| AACTCAACCCTACAGCAGGT+CGG | 0.680320 | 5.3:+80451322 | MS.gene75800:CDS |
| ACTGGAAGTCCAGATGAAGT+GGG | 0.681287 | 5.3:-80450634 | None:intergenic |
| CCTAATGGAGCGACACAGGG+AGG | 0.684964 | 5.3:+80451055 | MS.gene75800:CDS |
| AGCTGAGAGGACGTTCCTCG+AGG | 0.695606 | 5.3:-80450247 | None:intergenic |
| GGGTATGGCAACATGCCTCG+AGG | 0.698796 | 5.3:+80450232 | MS.gene75800:CDS |
| ATCATCCAAGTTGACAACGG+AGG | 0.723347 | 5.3:+80452915 | MS.gene75800:CDS |
| GAATCAACAAAGTCCCTATG+CGG | 0.723875 | 5.3:-80455943 | None:intergenic |
| GGTCTGCAAAGAATCAGGGG+TGG | 0.737761 | 5.3:-80450518 | None:intergenic |
| ATTGCTTGAGCTGAAAAGTG+GGG | 0.763163 | 5.3:-80459264 | None:intergenic |
| TAGAGATGGGAAAATCACCG+GGG | 0.788722 | 5.3:+80450762 | MS.gene75800:CDS |
| TGCATATGCAGTGATCATGG+TGG | 0.802888 | 5.3:+80457760 | MS.gene75800:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 80449572 | 80459547 | 80449572 | ID=MS.gene75800 |
| chr5.3 | mRNA | 80449572 | 80459547 | 80449572 | ID=MS.gene75800.t1;Parent=MS.gene75800 |
| chr5.3 | exon | 80449572 | 80449724 | 80449572 | ID=MS.gene75800.t1.exon1;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80449572 | 80449724 | 80449572 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80449887 | 80450826 | 80449887 | ID=MS.gene75800.t1.exon2;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80449887 | 80450826 | 80449887 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80450973 | 80451185 | 80450973 | ID=MS.gene75800.t1.exon3;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80450973 | 80451185 | 80450973 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80451280 | 80451509 | 80451280 | ID=MS.gene75800.t1.exon4;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80451280 | 80451509 | 80451280 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80451885 | 80451959 | 80451885 | ID=MS.gene75800.t1.exon5;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80451885 | 80451959 | 80451885 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80452709 | 80452780 | 80452709 | ID=MS.gene75800.t1.exon6;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80452709 | 80452780 | 80452709 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80452862 | 80452960 | 80452862 | ID=MS.gene75800.t1.exon7;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80452862 | 80452960 | 80452862 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80453065 | 80453136 | 80453065 | ID=MS.gene75800.t1.exon8;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80453065 | 80453136 | 80453065 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80453220 | 80453334 | 80453220 | ID=MS.gene75800.t1.exon9;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80453220 | 80453334 | 80453220 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80454283 | 80454351 | 80454283 | ID=MS.gene75800.t1.exon10;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80454283 | 80454351 | 80454283 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80455677 | 80456034 | 80455677 | ID=MS.gene75800.t1.exon11;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80455677 | 80456034 | 80455677 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80457771 | 80457900 | 80457771 | ID=MS.gene75800.t1.exon12;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80457771 | 80457900 | 80457771 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| chr5.3 | exon | 80459119 | 80459547 | 80459119 | ID=MS.gene75800.t1.exon13;Parent=MS.gene75800.t1 |
| chr5.3 | CDS | 80459119 | 80459547 | 80459119 | ID=cds.MS.gene75800.t1;Parent=MS.gene75800.t1 |
| Gene Sequence |
| Protein sequence |
