AlfalfaGEDB | MS.gene75999

M. sativa cultivar XinJiangDaYe / MS.gene75999

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF13041.9 PF13812.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75999.t1	XP_003621596.1	92.2	846	57	1	2	838	3	848	7.10E-229	803.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75999.t1	Q9SIC9	64.3	263	93	1	565	826	624	886	1.1e-97	359.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75999.t1	G7KS10	92.2	846	57	1	2	838	3	848	5.1e-229	803.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050945	MS.gene75999	0.817544	3.12E-52	-1.69E-46
MS.gene051043	MS.gene75999	0.815282	1.00E-51	-1.69E-46
MS.gene051234	MS.gene75999	0.80211	6.55E-49	-1.69E-46
MS.gene051699	MS.gene75999	0.819063	1.41E-52	-1.69E-46
MS.gene05985	MS.gene75999	-0.82055	6.47E-53	-1.69E-46
MS.gene061100	MS.gene75999	0.829433	5.16E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75999.t1	MTR_7g017530	94.681	846	36	1	2	838	3	848	0.0	1667
MS.gene75999.t1	MTR_7g017570	77.576	883	153	3	1	838	1	883	0.0	1364
MS.gene75999.t1	MTR_7g017525	94.850	233	12	0	606	838	1	233	3.41e-161	468
MS.gene75999.t1	MTR_4g107210	26.499	717	486	11	116	803	88	792	2.17e-75	263
MS.gene75999.t1	MTR_3g053350	28.463	397	283	1	133	528	170	566	1.76e-58	215
MS.gene75999.t1	MTR_3g053350	25.126	398	295	2	130	527	416	810	1.51e-38	155
MS.gene75999.t1	MTR_3g053350	28.255	361	256	2	137	497	458	815	9.93e-34	139
MS.gene75999.t1	MTR_3g053350	23.476	328	213	3	156	448	510	834	5.21e-23	105
MS.gene75999.t1	MTR_5g095130	26.716	670	450	13	95	745	249	896	3.46e-54	203
MS.gene75999.t1	MTR_5g095130	23.418	632	400	12	173	752	102	701	1.48e-38	155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75999.t1	AT2G31400	51.593	816	379	5	19	826	79	886	0.0	864
MS.gene75999.t1	AT2G31400	50.866	751	353	5	19	761	79	821	0.0	776
MS.gene75999.t1	AT1G74850	23.791	786	507	16	73	801	42	792	9.36e-62	224
MS.gene75999.t1	AT5G02860	24.673	612	417	8	94	692	93	673	4.86e-61	222
MS.gene75999.t1	AT5G02860	26.410	390	253	1	172	527	388	777	3.56e-45	175
MS.gene75999.t1	AT5G02860	21.326	558	400	6	160	710	271	796	6.68e-40	159
MS.gene75999.t1	AT5G02860	24.673	612	417	8	94	692	93	673	4.86e-61	222
MS.gene75999.t1	AT5G02860	26.410	390	253	1	172	527	388	777	3.56e-45	175
MS.gene75999.t1	AT5G02860	21.326	558	400	6	160	710	271	796	6.68e-40	159
MS.gene75999.t1	AT5G02860	24.673	612	417	8	94	692	93	673	4.86e-61	222

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Find 216 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGGTCATAGAGAGA+AGG	0.614732	7.3:+80866293	MS.gene75999:CDS
AAACTCTGTTTGATGAAATG+AGG	0.541164	7.3:+80866657	MS.gene75999:CDS
AAATGTCTTCCAGGAGAGTT+TGG	0.335661	7.3:+80865551	MS.gene75999:CDS
AACAGTTGGCCAAACTCTCC+TGG	0.429829	7.3:-80865560	None:intergenic
AACTTTGAAAAGGGCTGTCG+AGG	0.555490	7.3:+80867181	MS.gene75999:CDS
AAGACCAACACTGCATATTG+TGG	0.608723	7.3:+80866331	MS.gene75999:CDS
AAGACTATTTGAAGAGATGA+AGG	0.433000	7.3:+80865852	MS.gene75999:CDS
AAGGGAGACGCCGAAATGTG+TGG	0.563253	7.3:+80866881	MS.gene75999:CDS
AAGTTAGTTAGTACTATGAT+TGG	0.515627	7.3:+80865055	MS.gene75999:CDS
AATAATGTCTATGACGTTTA+TGG	0.275611	7.3:-80864625	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCTGTTTGATGAAATG+AGG	+	chr7.3:80866657-80866676	MS.gene75999:CDS	30.0%
AAGACTATTTGAAGAGATGA+AGG	+	chr7.3:80865852-80865871	MS.gene75999:CDS	30.0%
ACTAGCAAATTTCTAATAGC+TGG	-	chr7.3:80866759-80866778	None:intergenic	30.0%
ACTATGCAAAAATGGTTTAG+TGG	+	chr7.3:80866029-80866048	MS.gene75999:CDS	30.0%
ACTTATAGCACAATGATAGA+TGG	+	chr7.3:80865586-80865605	MS.gene75999:CDS	30.0%
ATAGAAGACAATTGTTCAGT+TGG	-	chr7.3:80866198-80866217	None:intergenic	30.0%
ATATGAATCTAAGTTATGGG+AGG	+	chr7.3:80864919-80864938	MS.gene75999:CDS	30.0%
ATGATTGATGTGTACACTAA+AGG	+	chr7.3:80865913-80865932	MS.gene75999:CDS	30.0%
ATTGAGTGAAATGGATCAAA+AGG	+	chr7.3:80865438-80865457	MS.gene75999:CDS	30.0%
CCTCTCATTAATACAATCAA+AGG	-	chr7.3:80867073-80867092	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	80864551	80867394	80864551	ID=MS.gene75999
chr7.3	mRNA	80864551	80867394	80864551	ID=MS.gene75999.t1;Parent=MS.gene75999
chr7.3	exon	80864551	80866427	80864551	ID=MS.gene75999.t1.exon1;Parent=MS.gene75999.t1
chr7.3	CDS	80864551	80866427	80864551	ID=cds.MS.gene75999.t1;Parent=MS.gene75999.t1
chr7.3	exon	80866532	80866748	80866532	ID=MS.gene75999.t1.exon2;Parent=MS.gene75999.t1
chr7.3	CDS	80866532	80866748	80866532	ID=cds.MS.gene75999.t1;Parent=MS.gene75999.t1
chr7.3	exon	80866853	80867037	80866853	ID=MS.gene75999.t1.exon3;Parent=MS.gene75999.t1
chr7.3	CDS	80866853	80867037	80866853	ID=cds.MS.gene75999.t1;Parent=MS.gene75999.t1
chr7.3	exon	80867136	80867394	80867136	ID=MS.gene75999.t1.exon4;Parent=MS.gene75999.t1
chr7.3	CDS	80867136	80867394	80867136	ID=cds.MS.gene75999.t1;Parent=MS.gene75999.t1

Gene Sequence

>MS.gene75999

ATGACTTCTACACCAACCCCTCCACCAAACTACTCCTCGATCCCTTCTGCACCGAGACAACGTCACCAAAATCACCATAAACGTCATAGACATTATTCCAACTCAAAGTCTGCACCTTTATCTGCTGCTGGCAGAGGCAATGGCAGTGGCAGAGCCTCCACATTAGGTTCTTTACTGGAAGGCAGGCAATCAAGGTTGGCTCCTGAATTTTCTGGCAGGAGATCAACCCGGTTCGCGGCCAAGATGCATTCTGGAATGCCGAGGGTGACTCCAAACAAACATGCTCACAGTGCTGCGGCTGACGAGGCACTTAGCTGTCTATTCAATGCTGGTAACAATATTGCCGCTATTGATAATGTTTTGATTACATATGAATCTAAGTTATGGGAGGTTGAAGATTATATTTATATGCTTAAAGAGTTTGGTAATACTGGTCATTTTTTGTTGGCGACTAAGTGTTTTGATTTTATTATGTGGAAGCAAAATGGGAGGGTTGCTAAGGGTAAGTTAGTTAGTACTATGATTGGTACTCTTGGTAGGTTAGGGGAGATTAATCTTGCTTTGAGATTGTTTGAAAGTGCTAGGCTTGAAGGGCATGGAAACACCGTGTATTCCTTTTCGGCTATGATTAGTGCTTATGGCCGAAATGGGTGCTTCCATGATGCTGTAGATTTGTTTAGGTCCATGAGAAGCTGGGGCGTTGATCCTAATTTAATTTCGTATAATTCGTTAATCGATGCGGGGGCTAAAGGGGATGTGGATTTTGATGTAGTTGTTAAGTTTTATGATGAAATGCTCGCTGAAGGCATAGTGCCGGATAGGCTTACATACAATTCATTGCTTTCTGTTTGCGCCTCTAAGGGCATGTGGGAAACAGCTCAAAAGTTATTGAGTGAAATGGATCAAAAGGGTATTGTTCGCGATGTCTTTACTTATAACACATATTTGGACACACTGTGTAAGGGCGGCCAAATAGATTTGGCTAGGAGGGTCTTGGAAGAAATGTCTTCCAGGAGAGTTTGGCCAACTGTTGTGACTTATAGCACAATGATAGATGGTTGTGCCAAGGCTAACCTCTTGGAAGATGCCCTAAATTTGTACGAAGAAATGAAGCTTCGATCTATTTCTGTTGATAGAGTGTCCTATAACACAATGGTCGGAATCTATGCGAAGCTCGGTAGGTTTGATGAAGCCATTGATCAGTGCAAAGAGATGGAGAGATGTGGAATGAAAAGAGATGTTGTAACTTATAATGCACTTTTGTCTGGATACGGCAGGTATGGCATGTATGATGAAGTTAGAAGACTATTTGAAGAGATGAAGGCTTGGAACATATATCCAAATACGCTAACTTACTCTACAATGATTGATGTGTACACTAAAGGAGGAATGTTTCAGGAAGCAATGGATGTTTATAAAGAGTTCAAGAAGGCACGATTGGAGGTCGATGTTGTCTTTTATACTTCAATTATAGATTCACTATGCAAAAATGGTTTAGTGGAGTCTTCTATTATGTTGCTTATTGCAATGATAGAGAAAGGAATCAAGCCAAATGTCGTCACTTTCAACTCCATAATTGATGCCTCCAGACAATCGCCAACTCTGGAATATGGGGTTCATGGTTCTTCACAAGCCATTGAGTATCCAACTGAACAATTGTCTTCTATGCTTATCGATGGTGCTTTTCCGAATAAAACAGGGGATGACCGGATCTTGAAAATGTTCGAGCAGCTTGCTGCTGAAAAAGCTGGTCATAGAGAGAAGGATAGGAGGGGACAACAAGACCAACACTGCATATTGTGGCTCTTCCAAAAAATGCATGAGATGCATATTAAACCGAATGTTGTCACATTTTCAGCCATTTTGAATGCTTGCAGGTAAATATTGACAATTTTTTTCTTTCTATTATCTTAAATCATACATATTTTGTAATGAATAAACAACCAATCTCAAAGCTTATATTTGATTAATTTTGATGCAGTCGTTGCACTTCATTTGAGGACGCTTCAATGCTGTTAGGTGCGCTTCGCCTGTTTGATAACCAGGTCTATGGTGTAACACATGGATTGTTGATGGGTTATAGAGAACAAGTATGGTTTCAGGCTCAAACTCTGTTTGATGAAATGAGGCGTATGGATTCTTCAACTGCATCCGCCTTCTATAACGCCCTCACAGATATGCTGTGGCACTTTGGTCAGGTAAAGTCCAGCTATTAGAAATTTGCTAGTTTTACATCTGTTAGTATTGTAGGAAATTCACTCATTTTCTGTTTTTGTTGTAATAAATTTGATTTTCACATCAGAGACGCGGAGCTGAAATGGTTGTAATCGAAGGGAGACGCCGAAATGTGTGGAAAGGTGAATGGTCAATTTCTCGCTTGGATCTGCATCTGATGTCTTGTGGTGCTGCTTGTGCAATGGTTCATTCATGGTTGCTCAATATGCATAGTACTTTATTTGAAGGCTCTGAACTGCCTAAGATTGTGACGTATGGATCTTTTTCACCTAAGATTTTATTTTCCTTTGATTGTATTAATGAGAGGCTTAAAGTGTTGATCATTATTTTAATTTTAATTCGTTTTGCAGCATTTTAACCGGTTGGGGCAAACACAGCAAAGTGATGGGTGATGGAACTTTGAAAAGGGCTGTCGAGGCACTTCTTAATGGAATGGGGTCACCCTTTAGGATTGCTGACGGTAATTTGGGAAGGTATGTGTCTCCTGGAGATTTGTTGGCTACTTGGCTGAGACAACCGGGCGTTTTCAATTTGCTTGTTCTGTACGACGTCCTTAATCATTCTCAAGCTGCTGGTCCATCGCATACTGCTGCTCCATCACATGCATGA

Protein sequence

>MS.gene75999.t1

MTSTPTPPPNYSSIPSAPRQRHQNHHKRHRHYSNSKSAPLSAAGRGNGSGRASTLGSLLEGRQSRLAPEFSGRRSTRFAAKMHSGMPRVTPNKHAHSAAADEALSCLFNAGNNIAAIDNVLITYESKLWEVEDYIYMLKEFGNTGHFLLATKCFDFIMWKQNGRVAKGKLVSTMIGTLGRLGEINLALRLFESARLEGHGNTVYSFSAMISAYGRNGCFHDAVDLFRSMRSWGVDPNLISYNSLIDAGAKGDVDFDVVVKFYDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDVFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIDQCKEMERCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKEFKKARLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLEYGVHGSSQAIEYPTEQLSSMLIDGAFPNKTGDDRILKMFEQLAAEKAGHREKDRRGQQDQHCILWLFQKMHEMHIKPNVVTFSAILNACSRCTSFEDASMLLGALRLFDNQVYGVTHGLLMGYREQVWFQAQTLFDEMRRMDSSTASAFYNALTDMLWHFGQRRGAEMVVIEGRRRNVWKGEWSISRLDLHLMSCGAACAMVHSWLLNMHSTLFEGSELPKIVTILTGWGKHSKVMGDGTLKRAVEALLNGMGSPFRIADGNLGRYVSPGDLLATWLRQPGVFNLLVLYDVLNHSQAAGPSHTAAPSHA