AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76101

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76101.t1 MTR_5g083360 97.354 567 8 1 1 560 1 567 0.0 1142
MS.gene76101.t1 MTR_3g071890 80.344 524 85 4 4 516 10 526 0.0 865
MS.gene76101.t1 MTR_5g073210 60.036 558 210 4 8 560 11 560 0.0 714
MS.gene76101.t1 MTR_5g020620 50.444 563 254 6 7 560 15 561 0.0 594
MS.gene76101.t1 MTR_5g020600 51.750 543 241 6 23 560 40 566 0.0 588
MS.gene76101.t1 MTR_7g062250 53.285 548 237 9 23 560 40 578 0.0 583
MS.gene76101.t1 MTR_7g058690 51.413 566 256 10 8 560 21 580 0.0 581
MS.gene76101.t1 MTR_7g062310 52.399 542 243 8 28 560 58 593 0.0 580
MS.gene76101.t1 MTR_4g064530 53.308 529 231 9 23 544 50 569 0.0 575
MS.gene76101.t1 MTR_7g458880 51.381 543 248 8 28 560 44 580 0.0 572
MS.gene76101.t1 MTR_5g069680 50.467 535 245 7 30 560 40 558 0.0 570
MS.gene76101.t1 MTR_4g015120 49.212 571 265 7 1 560 1 557 0.0 568
MS.gene76101.t1 MTR_2g008330 48.399 562 271 6 11 560 25 579 0.0 568
MS.gene76101.t1 MTR_7g060460 50.919 544 250 10 28 560 44 581 0.0 565
MS.gene76101.t1 MTR_3g101635 49.819 554 260 7 2 546 8 552 0.0 565
MS.gene76101.t1 MTR_3g101640 47.668 579 276 7 1 560 1 571 0.0 558
MS.gene76101.t1 MTR_5g081810 50.841 535 242 6 30 560 12 529 0.0 555
MS.gene76101.t1 MTR_3g462760 49.907 535 247 8 30 560 39 556 0.0 554
MS.gene76101.t1 MTR_7g065970 48.877 579 268 10 1 560 1 570 0.0 537
MS.gene76101.t1 MTR_4g064530 52.456 509 226 9 23 524 50 549 0.0 534
MS.gene76101.t1 MTR_4g019225 49.002 551 258 8 23 560 32 572 0.0 530
MS.gene76101.t1 MTR_7g065980 45.263 570 283 10 9 560 13 571 0.0 522
MS.gene76101.t1 MTR_8g027375 46.618 547 270 5 22 560 39 571 8.53e-178 514
MS.gene76101.t1 MTR_8g091390 31.449 566 304 20 32 560 49 567 3.18e-71 239
MS.gene76101.t1 MTR_5g081790 42.509 287 143 6 236 518 152 420 1.60e-65 220
MS.gene76101.t1 MTR_5g081790 47.590 166 70 2 8 156 5 170 1.40e-44 164
MS.gene76101.t1 MTR_3g078730 29.401 568 337 16 7 557 12 532 2.45e-64 220
MS.gene76101.t1 MTR_3g078700 29.730 555 319 16 7 538 12 518 6.19e-64 218
MS.gene76101.t1 MTR_3g078740 31.228 570 320 20 32 557 41 582 6.46e-64 220
MS.gene76101.t1 MTR_8g479390 28.081 495 305 15 31 520 45 493 1.27e-42 160
MS.gene76101.t1 MTR_1g090707 26.888 543 340 13 31 560 38 536 5.75e-40 154
MS.gene76101.t1 MTR_3g008580 26.047 549 363 19 23 560 35 551 2.22e-39 152
MS.gene76101.t1 MTR_4g101650 28.916 498 309 17 35 520 45 509 3.81e-39 151
MS.gene76101.t1 MTR_4g049390 26.908 498 300 14 35 520 45 490 6.69e-38 147
MS.gene76101.t1 MTR_8g479380 28.039 510 290 18 35 526 47 497 4.31e-37 145
MS.gene76101.t1 MTR_5g018270 27.525 505 292 17 31 520 45 490 7.59e-37 144
MS.gene76101.t1 MTR_1g026410 25.852 499 316 13 35 526 47 498 1.07e-36 144
MS.gene76101.t1 MTR_4g075690 25.089 562 367 15 8 560 16 532 3.61e-36 142
MS.gene76101.t1 MTR_3g115050 25.992 504 309 15 35 526 48 499 6.14e-36 141
MS.gene76101.t1 MTR_8g073840 40.805 174 64 4 23 195 36 171 2.97e-35 134
MS.gene76101.t1 MTR_2g088080 26.735 490 311 12 35 520 48 493 5.23e-35 139
MS.gene76101.t1 MTR_4g048350 26.735 490 310 15 35 520 45 489 1.47e-34 137
MS.gene76101.t1 MTR_7g051440 27.115 520 324 17 22 525 34 514 7.60e-33 133
MS.gene76101.t1 MTR_3g083430 24.955 553 354 15 22 560 30 535 8.59e-33 132
MS.gene76101.t1 MTR_3g083390 24.774 553 355 15 22 560 30 535 2.67e-32 131
MS.gene76101.t1 MTR_3g083450 24.774 553 355 15 22 560 31 536 3.89e-32 130
MS.gene76101.t1 MTR_3g083400 24.954 549 359 14 22 560 30 535 7.88e-32 129
MS.gene76101.t1 MTR_3g083440 24.412 553 357 14 22 560 30 535 1.05e-31 129
MS.gene76101.t1 MTR_3g083410 24.813 536 350 14 35 560 7 499 1.57e-30 125
MS.gene76101.t1 MTR_4g083210 25.097 514 330 15 22 526 30 497 2.35e-30 125
MS.gene76101.t1 MTR_7g058670 60.494 81 31 1 74 153 13 93 3.29e-30 114
MS.gene76101.t1 MTR_4g075690 25.420 476 302 14 8 474 16 447 1.09e-29 122
MS.gene76101.t1 MTR_4g132320 26.430 507 317 19 22 520 36 494 1.49e-28 120
MS.gene76101.t1 MTR_4g083190 25.520 529 355 14 35 560 45 537 2.23e-28 119
MS.gene76101.t1 MTR_2g088080 25.277 451 289 12 74 520 6 412 1.65e-24 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76101.t1 AT2G40370 75.439 570 124 3 7 560 11 580 0.0 915
MS.gene76101.t1 AT5G05390 76.408 568 120 3 1 560 4 565 0.0 912
MS.gene76101.t1 AT2G30210 63.811 572 193 5 1 560 1 570 0.0 780
MS.gene76101.t1 AT5G07130 64.799 571 188 7 1 560 1 569 0.0 756
MS.gene76101.t1 AT5G07130 65.844 486 160 6 79 560 1 484 0.0 652
MS.gene76101.t1 AT5G07130 65.844 486 160 6 79 560 1 484 0.0 652
MS.gene76101.t1 AT5G09360 51.228 570 256 8 1 560 12 569 0.0 593
MS.gene76101.t1 AT2G29130 52.355 552 235 9 23 560 36 573 0.0 586
MS.gene76101.t1 AT5G60020 50.633 553 254 10 22 560 30 577 0.0 565
MS.gene76101.t1 AT5G60020 51.188 547 248 10 28 560 4 545 0.0 565
MS.gene76101.t1 AT5G03260 50.369 542 249 6 23 560 32 557 0.0 561
MS.gene76101.t1 AT2G38080 49.628 538 249 8 28 560 38 558 0.0 559
MS.gene76101.t1 AT5G01190 51.210 537 244 5 28 560 36 558 0.0 554
MS.gene76101.t1 AT3G09220 49.545 549 250 8 11 543 13 550 0.0 548
MS.gene76101.t1 AT5G01190 49.820 556 259 6 9 560 5 544 0.0 545
MS.gene76101.t1 AT5G58910 47.426 544 268 8 23 560 36 567 0.0 540
MS.gene76101.t1 AT5G58910 47.505 541 266 8 26 560 38 566 0.0 540
MS.gene76101.t1 AT2G46570 46.984 547 268 5 22 560 37 569 0.0 530
MS.gene76101.t1 AT5G48100 46.812 549 277 9 4 544 6 547 0.0 528
MS.gene76101.t1 AT1G18140 48.381 556 260 12 23 560 35 581 0.0 523
MS.gene76101.t1 AT5G58910 46.580 541 264 9 26 560 2 523 2.75e-180 518
MS.gene76101.t1 AT5G60020 50.489 511 234 10 22 518 30 535 5.06e-179 516
MS.gene76101.t1 AT5G01040 45.660 576 274 11 5 560 10 566 4.91e-177 513
MS.gene76101.t1 AT5G01050 45.217 575 280 9 5 560 10 568 3.44e-175 508
MS.gene76101.t1 AT2G46570 46.667 495 242 5 74 560 4 484 9.60e-164 475
MS.gene76101.t1 AT3G09220 50.756 463 208 7 90 543 2 453 3.15e-163 473
MS.gene76101.t1 AT5G21100 31.664 559 310 20 32 557 39 558 9.94e-74 245
MS.gene76101.t1 AT4G39830 31.979 566 309 20 32 560 51 577 4.05e-70 236
MS.gene76101.t1 AT5G21105 31.115 556 318 18 32 557 53 573 2.60e-67 229
MS.gene76101.t1 AT5G21105 30.561 517 298 17 32 518 53 538 2.96e-57 201
MS.gene76101.t1 AT4G39830 30.134 521 285 20 78 560 3 482 6.47e-52 185
MS.gene76101.t1 AT4G39830 30.000 520 285 20 79 560 2 480 4.27e-51 182
MS.gene76101.t1 AT4G39830 29.480 519 278 18 78 560 3 469 3.03e-49 177
MS.gene76101.t1 AT5G66920 27.017 533 333 16 35 560 55 538 4.98e-44 164
MS.gene76101.t1 AT4G12420 27.586 551 334 20 1 525 1 512 2.16e-43 163
MS.gene76101.t1 AT4G12420 27.586 551 334 20 1 525 1 512 2.16e-43 163
MS.gene76101.t1 AT5G51480 26.902 539 347 16 35 560 46 550 7.04e-41 156
MS.gene76101.t1 AT1G75790 26.978 493 319 12 31 520 41 495 1.58e-39 152
MS.gene76101.t1 AT1G21860 26.217 534 331 16 8 526 11 496 1.73e-38 149
MS.gene76101.t1 AT5G21105 29.781 366 215 11 201 557 50 382 1.34e-36 140
MS.gene76101.t1 AT1G76160 25.152 493 326 14 35 526 46 496 2.33e-36 142
MS.gene76101.t1 AT1G41830 26.148 501 311 18 35 526 47 497 1.03e-35 141
MS.gene76101.t1 AT4G25240 26.215 576 366 18 8 560 11 550 1.88e-35 140
MS.gene76101.t1 AT4G25240 26.215 576 366 18 8 560 11 550 1.88e-35 140
MS.gene76101.t1 AT1G21850 26.295 502 308 17 35 526 47 496 2.27e-34 137
MS.gene76101.t1 AT5G48450 25.520 529 349 16 31 557 43 528 3.32e-34 137
MS.gene76101.t1 AT5G48450 25.660 530 347 17 31 557 43 528 7.93e-34 136
MS.gene76101.t1 AT4G22010 26.824 507 316 17 22 520 31 490 1.46e-32 132
MS.gene76101.t1 AT2G23630 27.239 536 329 17 35 560 48 532 4.38e-31 127
MS.gene76101.t1 AT2G23630 27.239 536 329 17 35 560 53 537 5.56e-31 127
MS.gene76101.t1 AT4G37160 26.208 538 333 15 35 560 49 534 1.19e-30 126
MS.gene76101.t1 AT1G55570 25.558 493 321 12 35 520 47 500 8.74e-29 120
MS.gene76101.t1 AT1G55560 25.000 536 333 18 35 557 44 523 4.38e-28 118
MS.gene76101.t1 AT3G13390 25.455 495 319 12 35 520 46 499 5.92e-28 118
MS.gene76101.t1 AT4G28090 23.944 497 325 15 38 526 49 500 1.21e-27 117
MS.gene76101.t1 AT3G13400 25.451 499 313 15 35 520 45 497 1.59e-25 110
MS.gene76101.t1 AT3G13400 25.451 499 313 15 35 520 45 497 1.59e-25 110
MS.gene76101.t1 AT4G37160 30.466 279 178 4 35 312 49 312 1.99e-24 106
MS.gene76101.t1 AT4G38420 23.279 494 329 15 35 520 48 499 2.48e-22 101
MS.gene76101.t1 AT4G38420 27.386 241 165 5 35 274 48 279 5.83e-20 93.2
MS.gene76101.t1 AT4G38420 27.386 241 165 5 35 274 48 279 1.05e-19 92.8

Find 138 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTATCGATTTACCATTAA+TGG 0.077522 5.2:-71380369 MS.gene76101:CDS
GTAAAAGCTTTAGAAGTTTA+AGG 0.083519 5.2:-71378978 MS.gene76101:CDS
CACCTACTACTGTTAGTTTA+TGG 0.135494 5.2:+71379280 None:intergenic
TGTACCTTCTTGTCCATTAA+TGG 0.180702 5.2:+71380356 None:intergenic
TGGCTTAGAGCCACAGTTTA+TGG 0.186697 5.2:-71380309 MS.gene76101:CDS
CAAATGAGCATCACTGTAAA+TGG 0.234006 5.2:-71381211 MS.gene76101:CDS
CGTGAAACACCCATTCTTCT+AGG 0.253813 5.2:-71380231 MS.gene76101:intron
ACAATTGTTCCAATTGATTC+AGG 0.259031 5.2:-71379369 MS.gene76101:CDS
TATATTGTTGCTGAGGGATT+TGG 0.270036 5.2:-71378556 MS.gene76101:CDS
ACTGTTGCTGTACCTGTTAA+TGG 0.271612 5.2:-71378472 MS.gene76101:CDS
TCTGATGCATACACTATTAA+TGG 0.273121 5.2:-71379808 MS.gene76101:CDS
CCAACTTTGGAAATTAATAA+TGG 0.283923 5.2:-71381175 MS.gene76101:CDS
AAAGTTACTAAGTTGAGATT+TGG 0.284792 5.2:-71378661 MS.gene76101:CDS
GGTGGCATGCTCATAGTTCA+TGG 0.302145 5.2:-71380329 MS.gene76101:CDS
TGAGGACCTGCCTTTGTGTT+AGG 0.313647 5.2:-71377791 None:intergenic
GTGCAGCATTGATTACTCTT+AGG 0.316195 5.2:+71379334 None:intergenic
GTGTATGCATCAGATATATT+TGG 0.328938 5.2:+71379817 None:intergenic
GGACATTGAGTCACAAATTC+TGG 0.334936 5.2:+71380414 None:intergenic
AGATCTTCATCAATTTCATT+AGG 0.335973 5.2:+71378943 None:intergenic
AGAGGATGGAGAAGGGCTAT+TGG 0.338124 5.2:-71377833 MS.gene76101:CDS
TGTTCACATTGGATGGGGTT+TGG 0.346069 5.2:-71377872 MS.gene76101:CDS
GTCCTCAGGAGGAGCTTCTA+TGG 0.350489 5.2:+71377807 None:intergenic
AATCACCCTATTCATCTTCA+TGG 0.351556 5.2:-71378589 MS.gene76101:CDS
TCATATCCATGAAGATGAAT+AGG 0.353366 5.2:+71378583 None:intergenic
CCATTATTAATTTCCAAAGT+TGG 0.356421 5.2:+71381175 None:intergenic
TTTGTTTCTCCTGAATCAAT+TGG 0.365718 5.2:+71379360 None:intergenic
CGCCGGGCGCGCTTACCAAT+CGG 0.373787 5.2:-71379148 MS.gene76101:CDS
GGATAAGCATCTCCTTCCTT+AGG 0.376333 5.2:+71380270 None:intergenic
AATTAATAATGGAGATACTT+TGG 0.377624 5.2:-71381164 MS.gene76101:CDS
GAGATTTGGATCAAGGGTTC+AGG 0.378810 5.2:-71378647 MS.gene76101:CDS
GTTTGATGTATATAGGTGTT+TGG 0.388702 5.2:-71377915 MS.gene76101:intron
ACAACCAATGTCCTCATGTT+AGG 0.393555 5.2:-71379231 MS.gene76101:CDS
ACAATTTCCTGGTCCAACTT+TGG 0.400549 5.2:-71381188 MS.gene76101:CDS
ATAACTGCCCAACCATTAAC+AGG 0.400604 5.2:+71378460 None:intergenic
AGAATGGGTGTTTCACGCTT+TGG 0.403573 5.2:+71380237 None:intergenic
GGATTAGAACATCAGTGGTT+TGG 0.403888 5.2:+71379202 None:intergenic
CTAAGTTGAGATTTGGATCA+AGG 0.404145 5.2:-71378654 MS.gene76101:CDS
TGCTGTACCTGTTAATGGTT+GGG 0.408222 5.2:-71378467 MS.gene76101:CDS
CAATGACCGACTCACATTAC+CGG 0.413180 5.2:+71378705 None:intergenic
AGCCGATTGGTAAGCGCGCC+CGG 0.414132 5.2:+71379146 None:intergenic
ACTGTAAATGGACAATTTCC+TGG 0.419136 5.2:-71381199 MS.gene76101:CDS
CCGGCGATGTAGTATCTTGA+TGG 0.420568 5.2:+71379165 None:intergenic
GTTACAATGTCACCATTCAT+TGG 0.426411 5.2:-71381117 MS.gene76101:intron
ATCCTGCAGGCTCATAAACT+TGG 0.437751 5.2:-71378787 MS.gene76101:CDS
CTTGGATGTTCACATTGGAT+GGG 0.442663 5.2:-71377878 MS.gene76101:CDS
ATGATCATTACCTAGAAGAA+TGG 0.443551 5.2:+71380221 None:intergenic
TAACTTTCTCCAGGACGAAT+AGG 0.449717 5.2:+71380393 None:intergenic
ACTTGGATGTTCACATTGGA+TGG 0.450150 5.2:-71377879 MS.gene76101:CDS
GCAGGTAATGAAGGCATGAT+TGG 0.454006 5.2:+71379033 None:intergenic
CATATCCATGAAGATGAATA+GGG 0.455044 5.2:+71378584 None:intergenic
GTGAGACAAGCCACACAAAC+AGG 0.461238 5.2:-71379847 MS.gene76101:CDS
GTGTTGCACAGCCTCTTCAC+TGG 0.461801 5.2:+71381235 None:intergenic
TCATTGTGGCAACCGATTCA+AGG 0.473488 5.2:-71378688 MS.gene76101:CDS
TCATCACCTTGTCCTGCAAA+GGG 0.474167 5.2:-71379072 MS.gene76101:CDS
TAACACAAAGGCAGGTCCTC+AGG 0.478994 5.2:+71377793 None:intergenic
TTGCTGTACCTGTTAATGGT+TGG 0.479566 5.2:-71378468 MS.gene76101:CDS
TGATGATTTGTATTCAAGAA+TGG 0.480556 5.2:+71379089 None:intergenic
GTAACTTTAGTCCCTTGAAT+CGG 0.482864 5.2:+71378676 None:intergenic
AGATTTGTTGCTGACAATCC+AGG 0.489827 5.2:-71378436 MS.gene76101:intron
TGATCATTACCTAGAAGAAT+GGG 0.490111 5.2:+71380222 None:intergenic
ACCTTGTTGATCCACCTATG+AGG 0.490977 5.2:-71378498 MS.gene76101:CDS
ACAGCAACAGTGTTCCTCAT+AGG 0.495749 5.2:+71378484 None:intergenic
TTGGATGTTCACATTGGATG+GGG 0.496559 5.2:-71377877 MS.gene76101:CDS
TTGGATTATGCATTGTCACT+TGG 0.496947 5.2:-71377896 MS.gene76101:CDS
AACCATAAACTAACAGTAGT+AGG 0.497147 5.2:-71379282 MS.gene76101:CDS
GGGGTTAGACAAATCAGAAC+AGG 0.499855 5.2:-71380450 MS.gene76101:CDS
GATAAGCATCTCCTTCCTTA+GGG 0.506054 5.2:+71380271 None:intergenic
GCTTGTCTCACAACATCCAT+AGG 0.506366 5.2:+71379859 None:intergenic
ATGAGGACATTGGTTGTGAA+TGG 0.509668 5.2:+71379237 None:intergenic
TCACGCTTTGGCTTAGTGAA+AGG 0.510131 5.2:+71380249 None:intergenic
CTCCAAGTTTATGAGCCTGC+AGG 0.510477 5.2:+71378785 None:intergenic
AGAACATCAGTGGTTTGGCC+AGG 0.514268 5.2:+71379207 None:intergenic
ATCATCACCTTGTCCTGCAA+AGG 0.514426 5.2:-71379073 MS.gene76101:CDS
GTGATATTATTACCAATGAA+TGG 0.515384 5.2:+71381105 None:intergenic
AGATGAATAGGGTGATTCTC+AGG 0.517564 5.2:+71378595 None:intergenic
ATCAGAACAGGATGGGCTGA+TGG 0.518148 5.2:-71380438 MS.gene76101:CDS
TTGATGGTGGTTGGTCACCT+TGG 0.518654 5.2:+71379181 None:intergenic
GAAGTGAACCGTGTACCGTT+CGG 0.519056 5.2:+71378853 None:intergenic
TTTGCAATTGTGAAGAAAAG+AGG 0.519484 5.2:+71379303 None:intergenic
ACTCAATGTCCTATTCGTCC+TGG 0.520865 5.2:-71380402 MS.gene76101:CDS
GATTATCCTAACACAAAGGC+AGG 0.522293 5.2:+71377785 None:intergenic
GCTCATAAACTTGGAGTACA+AGG 0.524236 5.2:-71378778 MS.gene76101:CDS
CAGCATTGATTACTCTTAGG+AGG 0.526575 5.2:+71379337 None:intergenic
GTGTTTGTGTCATTGTAAGC+AGG 0.530023 5.2:+71379015 None:intergenic
ATGGTGGGATGCAAACCCTA+TGG 0.535899 5.2:-71379875 MS.gene76101:CDS
TGATTTGCATTAAAATTCGA+CGG 0.538672 5.2:+71378886 None:intergenic
TCATTGTAAGCAGGTAATGA+AGG 0.540128 5.2:+71379024 None:intergenic
TGATTTCTATATTGTTGCTG+AGG 0.540678 5.2:-71378563 MS.gene76101:CDS
TTTACCATTAATGGACAAGA+AGG 0.541305 5.2:-71380360 MS.gene76101:CDS
CTTTACAAGTGCTCTACCAA+AGG 0.542011 5.2:-71379772 MS.gene76101:intron
TTTAATGCAAATCAATGTCA+AGG 0.544640 5.2:-71378877 MS.gene76101:CDS
ATCACCTTGTCCTGCAAAGG+GGG 0.545026 5.2:-71379070 MS.gene76101:CDS
TAAGTTGAGATTTGGATCAA+GGG 0.547755 5.2:-71378653 MS.gene76101:CDS
CCATCAAGATACTACATCGC+CGG 0.549313 5.2:-71379165 MS.gene76101:CDS
GATTTCTATATTGTTGCTGA+GGG 0.549381 5.2:-71378562 MS.gene76101:CDS
CGATAGGTGTAACTTTCTCC+AGG 0.550212 5.2:+71380384 None:intergenic
TGGAGCTGCTCCTGTTTGTG+TGG 0.553190 5.2:+71379837 None:intergenic
CATTGTGGCAACCGATTCAA+GGG 0.556129 5.2:-71378687 MS.gene76101:CDS
ACCGGTGTAATCAAATTGCA+CGG 0.556156 5.2:+71378723 None:intergenic
GTCAAGGACCGAACGGTACA+CGG 0.560784 5.2:-71378861 MS.gene76101:CDS
AGCTCTAATCATTCACCCTA+AGG 0.560869 5.2:-71380286 MS.gene76101:CDS
CATCAAGATACTACATCGCC+GGG 0.561153 5.2:-71379164 MS.gene76101:CDS
ACCACTGATGTTCTAATCCA+AGG 0.563616 5.2:-71379198 MS.gene76101:CDS
TTAATTTCCAAAGTTGGACC+AGG 0.564251 5.2:+71381181 None:intergenic
TCCATTAATGGTAAATCGAT+AGG 0.570762 5.2:+71380368 None:intergenic
GACAAGAAGGTACACTTTGG+TGG 0.574088 5.2:-71380347 MS.gene76101:CDS
CTTGTCTCACAACATCCATA+GGG 0.581965 5.2:+71379860 None:intergenic
TACACTATTAATGGTCAACC+TGG 0.583665 5.2:-71379799 MS.gene76101:CDS
CTAATCATTCACCCTAAGGA+AGG 0.586825 5.2:-71380282 MS.gene76101:CDS
TGTAGTATCTTGATGGTGGT+TGG 0.588008 5.2:+71379172 None:intergenic
GGTTGTGAATGGTTTGACAT+AGG 0.595120 5.2:+71379248 None:intergenic
ACCTTGGATTAGAACATCAG+TGG 0.604071 5.2:+71379197 None:intergenic
ATGGACAAGAAGGTACACTT+TGG 0.605647 5.2:-71380350 MS.gene76101:CDS
TTTGTATTCAAGAATGGCAG+TGG 0.605780 5.2:+71379095 None:intergenic
ATTGTTGAGTCCTAATCCAA+TGG 0.608848 5.2:+71378912 None:intergenic
TAGACAAATCAGAACAGGAT+GGG 0.611575 5.2:-71380445 MS.gene76101:CDS
TACAAGCAACTCCAGTGAAG+AGG 0.611814 5.2:-71381246 MS.gene76101:CDS
GAGCACTTGTAAAGATCACC+AGG 0.619435 5.2:+71379781 None:intergenic
GCAACAGTGTTCCTCATAGG+TGG 0.621280 5.2:+71378487 None:intergenic
TGTCACTTGGATGTTCACAT+TGG 0.623581 5.2:-71377883 MS.gene76101:CDS
GTGTAATCAAATTGCACGGG+AGG 0.625603 5.2:+71378727 None:intergenic
CCGGTGTAATCAAATTGCAC+GGG 0.626025 5.2:+71378724 None:intergenic
AATGTCCTCATGTTAGGACC+TGG 0.628341 5.2:-71379225 MS.gene76101:CDS
ATTACACCGGTAATGTGAGT+CGG 0.633330 5.2:-71378711 MS.gene76101:CDS
GTCCATAGAAGCTCCTCCTG+AGG 0.638740 5.2:-71377809 MS.gene76101:CDS
CACAAAGGCAGGTCCTCAGG+AGG 0.658358 5.2:+71377796 None:intergenic
TCACCTTGTCCTGCAAAGGG+GGG 0.659071 5.2:-71379069 MS.gene76101:CDS
TTTGGATTATCCTAACACAA+AGG 0.661322 5.2:+71377781 None:intergenic
GTAATGTGAGTCGGTCATTG+TGG 0.663037 5.2:-71378702 MS.gene76101:CDS
TCCTCATAGGTGGATCAACA+AGG 0.663984 5.2:+71378497 None:intergenic
AATCAATGTCAAGGACCGAA+CGG 0.668939 5.2:-71378868 MS.gene76101:CDS
CCCGTGCAATTTGATTACAC+CGG 0.670640 5.2:-71378724 MS.gene76101:CDS
AGGTCCTAACATGAGGACAT+TGG 0.671705 5.2:+71379227 None:intergenic
CATCACCTTGTCCTGCAAAG+GGG 0.673225 5.2:-71379071 MS.gene76101:CDS
TTTGGCCAGGTCCTAACATG+AGG 0.676864 5.2:+71379220 None:intergenic
TTAGACAAATCAGAACAGGA+TGG 0.677485 5.2:-71380446 MS.gene76101:CDS
GATTAGAGCTCCATAAACTG+TGG 0.691733 5.2:+71380299 None:intergenic
GCGATGTAGTATCTTGATGG+TGG 0.696908 5.2:+71379168 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTATAAATTTTATA+GGG - chr5.2:71381057-71381076 MS.gene76101:intron 0.0%
!! AAACTTTATCATAAAAATTA+AGG + chr5.2:71381100-71381119 None:intergenic 10.0%
!! ACTATAAAAATACTATTATA+TGG + chr5.2:71378583-71378602 None:intergenic 10.0%
!! ATTAACAACTAAAAATAAAA+AGG + chr5.2:71377909-71377928 None:intergenic 10.0%
!! CAATTAATTAATTATGTATA+CGG + chr5.2:71379685-71379704 None:intergenic 10.0%
!! TTAACAACTAAAAATAAAAA+GGG + chr5.2:71377908-71377927 None:intergenic 10.0%
!!! ATAATAGTATTTTTATAGTA+GGG - chr5.2:71378584-71378603 MS.gene76101:CDS 10.0%
!!! ATGATGATTATTTTTTAATT+AGG - chr5.2:71379328-71379347 MS.gene76101:CDS 10.0%
!!! ATTTTGAATAAAATTTATGT+AGG + chr5.2:71380923-71380942 None:intergenic 10.0%
!!! TATAATAGTATTTTTATAGT+AGG - chr5.2:71378583-71378602 MS.gene76101:CDS 10.0%
!!! TGATGATTATTTTTTAATTA+GGG - chr5.2:71379329-71379348 MS.gene76101:CDS 10.0%
!!! TTTTTTCAATTTGTTAATTA+AGG - chr5.2:71379193-71379212 MS.gene76101:CDS 10.0%
!! AGATAAGAATTAAAATAAGT+TGG + chr5.2:71379151-71379170 None:intergenic 15.0%
!! AGTGTAATAACAAATTTAAT+TGG - chr5.2:71378405-71378424 MS.gene76101:intron 15.0%
!! GGAGATTAATTATAATTAAT+TGG - chr5.2:71377939-71377958 MS.gene76101:intron 15.0%
!! TAAAAATACTATTATATGGA+AGG + chr5.2:71378579-71378598 None:intergenic 15.0%
!! TCAAAAATCAAAAACAAAAA+AGG + chr5.2:71378532-71378551 None:intergenic 15.0%
!! TGCAAATAATCAATAATTTA+TGG - chr5.2:71378723-71378742 MS.gene76101:CDS 15.0%
!! TTATATTCCTATTAGTATAT+AGG - chr5.2:71378331-71378350 MS.gene76101:intron 15.0%
!!! ACCACAATTTAAAATTTTAA+TGG - chr5.2:71378660-71378679 MS.gene76101:CDS 15.0%
!!! ACCATTAAAATTTTAAATTG+TGG + chr5.2:71378664-71378683 None:intergenic 15.0%
!!! GATGATTATTTTTTAATTAG+GGG - chr5.2:71379330-71379349 MS.gene76101:CDS 15.0%
!!! TAAGCAAAAATCAATATTTT+AGG + chr5.2:71379714-71379733 None:intergenic 15.0%
!!! TAGTTGTTAATTTAACTTTT+AGG - chr5.2:71377918-71377937 MS.gene76101:intron 15.0%
!! AAGAAAAATTGTTAAGAAGA+TGG + chr5.2:71377811-71377830 None:intergenic 20.0%
!! AATCTTTGTCTAAAAAGAAA+AGG + chr5.2:71379270-71379289 None:intergenic 20.0%
!! AATGATCATATGTCAAATAA+TGG + chr5.2:71379825-71379844 None:intergenic 20.0%
!! ACATAAAATAATCAAACCTT+TGG + chr5.2:71379476-71379495 None:intergenic 20.0%
!! AGAATTAAATAAGTGATTGA+AGG + chr5.2:71379771-71379790 None:intergenic 20.0%
!! ATGCATGCTATAATTTATAA+AGG - chr5.2:71378690-71378709 MS.gene76101:CDS 20.0%
!! ATGTTTGATCTTATGTAATT+TGG - chr5.2:71381289-71381308 MS.gene76101:intron 20.0%
!! ATTATTTGACATATGATCAT+TGG - chr5.2:71379824-71379843 MS.gene76101:CDS 20.0%
!! GTCTCAATAAAATCAAAATA+AGG - chr5.2:71380998-71381017 MS.gene76101:intron 20.0%
!! TTGAATAAAATTTATGTAGG+AGG + chr5.2:71380920-71380939 None:intergenic 20.0%
!!! AATTAATAATGGAGATACTT+TGG - chr5.2:71378065-71378084 MS.gene76101:intron 20.0%
!!! ATTAGGGTTAATTATGTTTT+CGG - chr5.2:71380859-71380878 MS.gene76101:intron 20.0%
!!! TTATTGCATTTTGAATCTTT+AGG - chr5.2:71378753-71378772 MS.gene76101:CDS 20.0%
!!! TTATTTTTTAATTAGGGGAA+TGG - chr5.2:71379335-71379354 MS.gene76101:CDS 20.0%
!!! TTTTTGCTTATAATAGTGAT+CGG - chr5.2:71379724-71379743 MS.gene76101:intron 20.0%
! AAAGTTTCACAAACATGATA+TGG - chr5.2:71381113-71381132 MS.gene76101:intron 25.0%
! AAGGTGTAAGAAAACAAAAA+AGG + chr5.2:71378560-71378579 None:intergenic 25.0%
! AATGGAAAAATGTTTAGTCA+TGG + chr5.2:71379807-71379826 None:intergenic 25.0%
! AGATCTTCATCAATTTCATT+AGG + chr5.2:71380289-71380308 None:intergenic 25.0%
! CCATTATTAATTTCCAAAGT+TGG + chr5.2:71378057-71378076 None:intergenic 25.0%
! GTGATATTATTACCAATGAA+TGG + chr5.2:71378127-71378146 None:intergenic 25.0%
! TCCTATTAGTATATAGGAAA+AGG - chr5.2:71378337-71378356 MS.gene76101:intron 25.0%
! TTTAATGCAAATCAATGTCA+AGG - chr5.2:71380352-71380371 MS.gene76101:CDS 25.0%
! TTTGGTTGTTTGATGTATAT+AGG - chr5.2:71381307-71381326 MS.gene76101:intron 25.0%
!! AAAGTTACTAAGTTGAGATT+TGG - chr5.2:71380568-71380587 MS.gene76101:intron 25.0%
!! CCAACTTTGGAAATTAATAA+TGG - chr5.2:71378054-71378073 MS.gene76101:intron 25.0%
!! CTTAACAATTTTTCTTCTCT+TGG - chr5.2:71377815-71377834 MS.gene76101:CDS 25.0%
!! TCCTTTTCCTATATACTAAT+AGG + chr5.2:71378341-71378360 None:intergenic 25.0%
!! TGATGATTTGTATTCAAGAA+TGG + chr5.2:71380143-71380162 None:intergenic 25.0%
!! TGATTTGCATTAAAATTCGA+CGG + chr5.2:71380346-71380365 None:intergenic 25.0%
!!! AATTTTGAAGCATCTTTCTT+AGG + chr5.2:71380709-71380728 None:intergenic 25.0%
!!! ATTTTGAAGCATCTTTCTTA+GGG + chr5.2:71380708-71380727 None:intergenic 25.0%
!!! GTAAAAGCTTTAGAAGTTTA+AGG - chr5.2:71380251-71380270 MS.gene76101:CDS 25.0%
AACCATAAACTAACAGTAGT+AGG - chr5.2:71379947-71379966 MS.gene76101:intron 30.0%
ATAAATAGCAATGCTCGAAA+AGG - chr5.2:71378470-71378489 MS.gene76101:CDS 30.0%
ATCAAAATAAGGACTGAAAG+TGG - chr5.2:71381009-71381028 MS.gene76101:intron 30.0%
ATGATCATTACCTAGAAGAA+TGG + chr5.2:71379011-71379030 None:intergenic 30.0%
CATATCCATGAAGATGAATA+GGG + chr5.2:71380648-71380667 None:intergenic 30.0%
GACAAAGATTATGTTCATGA+TGG - chr5.2:71379280-71379299 MS.gene76101:CDS 30.0%
GATTTCTATATTGTTGCTGA+GGG - chr5.2:71380667-71380686 MS.gene76101:intron 30.0%
GGCATGTTTATTAATGTGAA+AGG - chr5.2:71377960-71377979 MS.gene76101:intron 30.0%
GTGTATGCATCAGATATATT+TGG + chr5.2:71379415-71379434 None:intergenic 30.0%
GTTTGATGTATATAGGTGTT+TGG - chr5.2:71381314-71381333 MS.gene76101:intron 30.0%
TAAATAGCAATGCTCGAAAA+GGG - chr5.2:71378471-71378490 MS.gene76101:CDS 30.0%
TCATATCCATGAAGATGAAT+AGG + chr5.2:71380649-71380668 None:intergenic 30.0%
TCCATTAATGGTAAATCGAT+AGG + chr5.2:71378864-71378883 None:intergenic 30.0%
TCTGATGCATACACTATTAA+TGG - chr5.2:71379421-71379440 MS.gene76101:intron 30.0%
TGATCATTACCTAGAAGAAT+GGG + chr5.2:71379010-71379029 None:intergenic 30.0%
TGATTTCTATATTGTTGCTG+AGG - chr5.2:71380666-71380685 MS.gene76101:intron 30.0%
TTTGCAATTGTGAAGAAAAG+AGG + chr5.2:71379929-71379948 None:intergenic 30.0%
! ACAATTGTTCCAATTGATTC+AGG - chr5.2:71379860-71379879 MS.gene76101:CDS 30.0%
! ATTTTGAATCTTTAGGCATG+GGG - chr5.2:71378760-71378779 MS.gene76101:CDS 30.0%
! CATTTTGAATCTTTAGGCAT+GGG - chr5.2:71378759-71378778 MS.gene76101:CDS 30.0%
! CTTTTCTTTACCATTGGATT+AGG - chr5.2:71380307-71380326 MS.gene76101:CDS 30.0%
! GAAGATCTTTTCTTTACCAT+TGG - chr5.2:71380301-71380320 MS.gene76101:CDS 30.0%
! TAAGTTGAGATTTGGATCAA+GGG - chr5.2:71380576-71380595 MS.gene76101:intron 30.0%
! TTTACCATTAATGGACAAGA+AGG - chr5.2:71378869-71378888 MS.gene76101:CDS 30.0%
! TTTGTTTCTCCTGAATCAAT+TGG + chr5.2:71379872-71379891 None:intergenic 30.0%
!! ACCTATCGATTTACCATTAA+TGG - chr5.2:71378860-71378879 MS.gene76101:CDS 30.0%
!! TTTTTAATTAGGGGAATGGT+GGG - chr5.2:71379339-71379358 MS.gene76101:CDS 30.0%
!!! TTTTTTAATTAGGGGAATGG+TGG - chr5.2:71379338-71379357 MS.gene76101:CDS 30.0%
AATCACCCTATTCATCTTCA+TGG - chr5.2:71380640-71380659 MS.gene76101:intron 35.0%
ACTGTAAATGGACAATTTCC+TGG - chr5.2:71378030-71378049 MS.gene76101:intron 35.0%
ATTGTTGAGTCCTAATCCAA+TGG + chr5.2:71380320-71380339 None:intergenic 35.0%
CAAATGAGCATCACTGTAAA+TGG - chr5.2:71378018-71378037 MS.gene76101:intron 35.0%
GAAATTGAGCTAATGTTACC+TGG + chr5.2:71380814-71380833 None:intergenic 35.0%
GAGACTAAGTACATGACTAA+AGG + chr5.2:71380983-71381002 None:intergenic 35.0%
GCAGTCAAATGAAATTGATG+TGG + chr5.2:71381184-71381203 None:intergenic 35.0%
GTAACTTTAGTCCCTTGAAT+CGG + chr5.2:71380556-71380575 None:intergenic 35.0%
GTTACAATGTCACCATTCAT+TGG - chr5.2:71378112-71378131 MS.gene76101:intron 35.0%
TACACTATTAATGGTCAACC+TGG - chr5.2:71379430-71379449 MS.gene76101:intron 35.0%
TAGACAAATCAGAACAGGAT+GGG - chr5.2:71378784-71378803 MS.gene76101:CDS 35.0%
TATATTGTTGCTGAGGGATT+TGG - chr5.2:71380673-71380692 MS.gene76101:intron 35.0%
TCATTGTAAGCAGGTAATGA+AGG + chr5.2:71380208-71380227 None:intergenic 35.0%
TCTTAGTACAAGTGTGAAGA+AGG + chr5.2:71378289-71378308 None:intergenic 35.0%
TGCAGGATTGAAAAATTGCT+AGG + chr5.2:71380430-71380449 None:intergenic 35.0%
TGTACCTTCTTGTCCATTAA+TGG + chr5.2:71378876-71378895 None:intergenic 35.0%
TTAATTTCCAAAGTTGGACC+AGG + chr5.2:71378051-71378070 None:intergenic 35.0%
TTAGACAAATCAGAACAGGA+TGG - chr5.2:71378783-71378802 MS.gene76101:CDS 35.0%
TTGCTTATAATAGTGATCGG+AGG - chr5.2:71379727-71379746 MS.gene76101:intron 35.0%
TTGGATTATGCATTGTCACT+TGG - chr5.2:71381333-71381352 MS.gene76101:intron 35.0%
TTTGTATTCAAGAATGGCAG+TGG + chr5.2:71380137-71380156 None:intergenic 35.0%
! CACCTACTACTGTTAGTTTA+TGG + chr5.2:71379952-71379971 None:intergenic 35.0%
! CTAAGTTGAGATTTGGATCA+AGG - chr5.2:71380575-71380594 MS.gene76101:intron 35.0%
! GATTATGTTCATGATGGAGA+TGG - chr5.2:71379286-71379305 MS.gene76101:CDS 35.0%
! GCATTTTGAATCTTTAGGCA+TGG - chr5.2:71378758-71378777 MS.gene76101:CDS 35.0%
! TCATGATGGAGATGGTTTAA+CGG - chr5.2:71379294-71379313 MS.gene76101:CDS 35.0%
!! AAAAAGTGTTTGCTTGCTTG+TGG + chr5.2:71378262-71378281 None:intergenic 35.0%
!! AAAAGTGTTTGCTTGCTTGT+GGG + chr5.2:71378261-71378280 None:intergenic 35.0%
!! AGTACAAGGTGTTTTTACGA+CGG - chr5.2:71380465-71380484 MS.gene76101:intron 35.0%
!! TAGCAATTTTTCAATCCTGC+AGG - chr5.2:71380429-71380448 MS.gene76101:CDS 35.0%
AATCAATGTCAAGGACCGAA+CGG - chr5.2:71380361-71380380 MS.gene76101:CDS 40.0%
AATTGATGTGGCCTCAGTTA+TGG + chr5.2:71381172-71381191 None:intergenic 40.0%
ACAACCAATGTCCTCATGTT+AGG - chr5.2:71379998-71380017 MS.gene76101:intron 40.0%
ACAATTTCCTGGTCCAACTT+TGG - chr5.2:71378041-71378060 MS.gene76101:intron 40.0%
ACCACTGATGTTCTAATCCA+AGG - chr5.2:71380031-71380050 MS.gene76101:intron 40.0%
ACCGGTGTAATCAAATTGCA+CGG + chr5.2:71380509-71380528 None:intergenic 40.0%
ACTGTTGCTGTACCTGTTAA+TGG - chr5.2:71380757-71380776 MS.gene76101:intron 40.0%
ACTTGGATGTTCACATTGGA+TGG - chr5.2:71381350-71381369 MS.gene76101:intron 40.0%
AGATGAATAGGGTGATTCTC+AGG + chr5.2:71380637-71380656 None:intergenic 40.0%
ATAACTGCCCAACCATTAAC+AGG + chr5.2:71380772-71380791 None:intergenic 40.0%
ATTACACCGGTAATGTGAGT+CGG - chr5.2:71380518-71380537 MS.gene76101:intron 40.0%
CAGGACCAAGTATCTATATG+CGG - chr5.2:71381213-71381232 MS.gene76101:CDS 40.0%
CATATGATCATTGGCAATGC+AGG - chr5.2:71379833-71379852 MS.gene76101:CDS 40.0%
CTAATCATTCACCCTAAGGA+AGG - chr5.2:71378947-71378966 MS.gene76101:CDS 40.0%
CTTGGATGTTCACATTGGAT+GGG - chr5.2:71381351-71381370 MS.gene76101:intron 40.0%
CTTGTCTCACAACATCCATA+GGG + chr5.2:71379372-71379391 None:intergenic 40.0%
CTTTACAAGTGCTCTACCAA+AGG - chr5.2:71379457-71379476 MS.gene76101:intron 40.0%
GATAAGCATCTCCTTCCTTA+GGG + chr5.2:71378961-71378980 None:intergenic 40.0%
GATTAGAGCTCCATAAACTG+TGG + chr5.2:71378933-71378952 None:intergenic 40.0%
GCGGTTGCGATATAAAACTT+TGG - chr5.2:71381232-71381251 MS.gene76101:CDS 40.0%
GCTCATAAACTTGGAGTACA+AGG - chr5.2:71380451-71380470 MS.gene76101:CDS 40.0%
GGACATTGAGTCACAAATTC+TGG + chr5.2:71378818-71378837 None:intergenic 40.0%
GGATTAGAACATCAGTGGTT+TGG + chr5.2:71380030-71380049 None:intergenic 40.0%
GGTTGTGAATGGTTTGACAT+AGG + chr5.2:71379984-71380003 None:intergenic 40.0%
TAACTTTCTCCAGGACGAAT+AGG + chr5.2:71378839-71378858 None:intergenic 40.0%
TGCTGTACCTGTTAATGGTT+GGG - chr5.2:71380762-71380781 MS.gene76101:intron 40.0%
TTGCTGTACCTGTTAATGGT+TGG - chr5.2:71380761-71380780 MS.gene76101:intron 40.0%
TTGGATGTTCACATTGGATG+GGG - chr5.2:71381352-71381371 MS.gene76101:intron 40.0%
! ACCTTGGATTAGAACATCAG+TGG + chr5.2:71380035-71380054 None:intergenic 40.0%
! AGCTCTAATCATTCACCCTA+AGG - chr5.2:71378943-71378962 MS.gene76101:CDS 40.0%
! ATGAGGACATTGGTTGTGAA+TGG + chr5.2:71379995-71380014 None:intergenic 40.0%
! ATGGACAAGAAGGTACACTT+TGG - chr5.2:71378879-71378898 MS.gene76101:CDS 40.0%
! GTGTTTGTGTCATTGTAAGC+AGG + chr5.2:71380217-71380236 None:intergenic 40.0%
! TGTCACTTGGATGTTCACAT+TGG - chr5.2:71381346-71381365 MS.gene76101:intron 40.0%
! TGTTTCTGTGACCATAACTG+AGG - chr5.2:71381158-71381177 MS.gene76101:CDS 40.0%
! TTTTGGTAGAGGATGGAGAA+GGG - chr5.2:71381389-71381408 MS.gene76101:intron 40.0%
!! AGATTTGTTGCTGACAATCC+AGG - chr5.2:71380793-71380812 MS.gene76101:intron 40.0%
!! CAGCATTGATTACTCTTAGG+AGG + chr5.2:71379895-71379914 None:intergenic 40.0%
!! GTGCAGCATTGATTACTCTT+AGG + chr5.2:71379898-71379917 None:intergenic 40.0%
!! TGTAGTATCTTGATGGTGGT+TGG + chr5.2:71380060-71380079 None:intergenic 40.0%
!! TTTTTGGTAGAGGATGGAGA+AGG - chr5.2:71381388-71381407 MS.gene76101:intron 40.0%
!!! ACTGTGTTTTTGGTAGAGGA+TGG - chr5.2:71381382-71381401 MS.gene76101:intron 40.0%
AATGTCCTCATGTTAGGACC+TGG - chr5.2:71380004-71380023 MS.gene76101:intron 45.0%
ACAGCAACAGTGTTCCTCAT+AGG + chr5.2:71380748-71380767 None:intergenic 45.0%
ACCTTGTTGATCCACCTATG+AGG - chr5.2:71380731-71380750 MS.gene76101:intron 45.0%
ACTCAATGTCCTATTCGTCC+TGG - chr5.2:71378827-71378846 MS.gene76101:CDS 45.0%
AGAATGGGTGTTTCACGCTT+TGG + chr5.2:71378995-71379014 None:intergenic 45.0%
AGGTCCTAACATGAGGACAT+TGG + chr5.2:71380005-71380024 None:intergenic 45.0%
ATCATCACCTTGTCCTGCAA+AGG - chr5.2:71380156-71380175 MS.gene76101:intron 45.0%
ATCCTGCAGGCTCATAAACT+TGG - chr5.2:71380442-71380461 MS.gene76101:CDS 45.0%
ATTTGACTGCGATTCTCTGC+AGG - chr5.2:71381194-71381213 MS.gene76101:CDS 45.0%
CATCAAGATACTACATCGCC+GGG - chr5.2:71380065-71380084 MS.gene76101:intron 45.0%
CCATCAAGATACTACATCGC+CGG - chr5.2:71380064-71380083 MS.gene76101:intron 45.0%
CCCGTGCAATTTGATTACAC+CGG - chr5.2:71380505-71380524 MS.gene76101:intron 45.0%
CCGGTGTAATCAAATTGCAC+GGG + chr5.2:71380508-71380527 None:intergenic 45.0%
CGATAGGTGTAACTTTCTCC+AGG + chr5.2:71378848-71378867 None:intergenic 45.0%
CGCAACCGCATATAGATACT+TGG + chr5.2:71381221-71381240 None:intergenic 45.0%
CGTGAAACACCCATTCTTCT+AGG - chr5.2:71378998-71379017 MS.gene76101:CDS 45.0%
GAGATTTGGATCAAGGGTTC+AGG - chr5.2:71380582-71380601 MS.gene76101:intron 45.0%
GAGCACTTGTAAAGATCACC+AGG + chr5.2:71379451-71379470 None:intergenic 45.0%
GCGATGTAGTATCTTGATGG+TGG + chr5.2:71380064-71380083 None:intergenic 45.0%
GCTTGTCTCACAACATCCAT+AGG + chr5.2:71379373-71379392 None:intergenic 45.0%
GGATAAGCATCTCCTTCCTT+AGG + chr5.2:71378962-71378981 None:intergenic 45.0%
GGGGTTAGACAAATCAGAAC+AGG - chr5.2:71378779-71378798 MS.gene76101:CDS 45.0%
GTAATGTGAGTCGGTCATTG+TGG - chr5.2:71380527-71380546 MS.gene76101:intron 45.0%
GTGTAATCAAATTGCACGGG+AGG + chr5.2:71380505-71380524 None:intergenic 45.0%
TACAAGCAACTCCAGTGAAG+AGG - chr5.2:71377983-71378002 MS.gene76101:intron 45.0%
TCATCACCTTGTCCTGCAAA+GGG - chr5.2:71380157-71380176 MS.gene76101:intron 45.0%
TCCTCATAGGTGGATCAACA+AGG + chr5.2:71380735-71380754 None:intergenic 45.0%
TGGCTTAGAGCCACAGTTTA+TGG - chr5.2:71378920-71378939 MS.gene76101:CDS 45.0%
TGTTCACATTGGATGGGGTT+TGG - chr5.2:71381357-71381376 MS.gene76101:intron 45.0%
! AAATTGCACGGGAGGTTTTG+TGG + chr5.2:71380497-71380516 None:intergenic 45.0%
! CAATGACCGACTCACATTAC+CGG + chr5.2:71380527-71380546 None:intergenic 45.0%
! CATTGTGGCAACCGATTCAA+GGG - chr5.2:71380542-71380561 MS.gene76101:intron 45.0%
! GACAAGAAGGTACACTTTGG+TGG - chr5.2:71378882-71378901 MS.gene76101:CDS 45.0%
! GCAGGTAATGAAGGCATGAT+TGG + chr5.2:71380199-71380218 None:intergenic 45.0%
! GGGTTTGGCTACTGTGTTTT+TGG - chr5.2:71381372-71381391 MS.gene76101:intron 45.0%
! TCACGCTTTGGCTTAGTGAA+AGG + chr5.2:71378983-71379002 None:intergenic 45.0%
! TCATTGTGGCAACCGATTCA+AGG - chr5.2:71380541-71380560 MS.gene76101:intron 45.0%
!! AATTGCACGGGAGGTTTTGT+GGG + chr5.2:71380496-71380515 None:intergenic 45.0%
!!! GGCTACTGTGTTTTTGGTAG+AGG - chr5.2:71381378-71381397 MS.gene76101:intron 45.0%
!! ATTGTATAAAAAATATAATT+AGG - chr5.2:71380842-71380861 MS.gene76101:intron 5.0%
!! TGTAAAAATTAATAAAAATA+GGG + chr5.2:71380950-71380969 None:intergenic 5.0%
!! TTGTAAAAATTAATAAAAAT+AGG + chr5.2:71380951-71380970 None:intergenic 5.0%
!! TTGTATAAAAAATATAATTA+GGG - chr5.2:71380843-71380862 MS.gene76101:intron 5.0%
!!! GAAAAAATTATAAATTTTAT+AGG - chr5.2:71381056-71381075 MS.gene76101:intron 5.0%
!!! TTTTATTAATTTTTACAAAA+TGG - chr5.2:71380953-71380972 MS.gene76101:intron 5.0%
AGAGGATGGAGAAGGGCTAT+TGG - chr5.2:71381396-71381415 MS.gene76101:CDS 50.0%
ATATTTGCACCCCCCTTTGC+AGG + chr5.2:71380172-71380191 None:intergenic 50.0%
ATCACCTTGTCCTGCAAAGG+GGG - chr5.2:71380159-71380178 MS.gene76101:intron 50.0%
CATCACCTTGTCCTGCAAAG+GGG - chr5.2:71380158-71380177 MS.gene76101:intron 50.0%
CCGGCGATGTAGTATCTTGA+TGG + chr5.2:71380067-71380086 None:intergenic 50.0%
CTCCAAGTTTATGAGCCTGC+AGG + chr5.2:71380447-71380466 None:intergenic 50.0%
GAAGTGAACCGTGTACCGTT+CGG + chr5.2:71380379-71380398 None:intergenic 50.0%
GCAACAGTGTTCCTCATAGG+TGG + chr5.2:71380745-71380764 None:intergenic 50.0%
GGTGGCATGCTCATAGTTCA+TGG - chr5.2:71378900-71378919 MS.gene76101:CDS 50.0%
GTGAGACAAGCCACACAAAC+AGG - chr5.2:71379382-71379401 MS.gene76101:intron 50.0%
TAACACAAAGGCAGGTCCTC+AGG + chr5.2:71381439-71381458 None:intergenic 50.0%
TTTGGCCAGGTCCTAACATG+AGG + chr5.2:71380012-71380031 None:intergenic 50.0%
! ACGCAGCATTTTGAGCCGAT+TGG + chr5.2:71380099-71380118 None:intergenic 50.0%
! AGAACATCAGTGGTTTGGCC+AGG + chr5.2:71380025-71380044 None:intergenic 50.0%
! ATGGTGGGATGCAAACCCTA+TGG - chr5.2:71379354-71379373 MS.gene76101:CDS 50.0%
!! ATCAGAACAGGATGGGCTGA+TGG - chr5.2:71378791-71378810 MS.gene76101:CDS 50.0%
!! TTGATGGTGGTTGGTCACCT+TGG + chr5.2:71380051-71380070 None:intergenic 50.0%
GTCAAGGACCGAACGGTACA+CGG - chr5.2:71380368-71380387 MS.gene76101:CDS 55.0%
GTCCATAGAAGCTCCTCCTG+AGG - chr5.2:71381420-71381439 MS.gene76101:CDS 55.0%
GTCCTCAGGAGGAGCTTCTA+TGG + chr5.2:71381425-71381444 None:intergenic 55.0%
GTGTTGCACAGCCTCTTCAC+TGG + chr5.2:71377997-71378016 None:intergenic 55.0%
TCACCTTGTCCTGCAAAGGG+GGG - chr5.2:71380160-71380179 MS.gene76101:intron 55.0%
TGGAGCTGCTCCTGTTTGTG+TGG + chr5.2:71379395-71379414 None:intergenic 55.0%
CACAAAGGCAGGTCCTCAGG+AGG + chr5.2:71381436-71381455 None:intergenic 60.0%
AGCCGATTGGTAAGCGCGCC+CGG + chr5.2:71380086-71380105 None:intergenic 65.0%
GCACCCCCCTTTGCAGGACA+AGG + chr5.2:71380166-71380185 None:intergenic 65.0%
CGCCGGGCGCGCTTACCAAT+CGG - chr5.2:71380081-71380100 MS.gene76101:intron 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 71377792 71381459 71377792 ID=MS.gene76101
chr5.2 mRNA 71377792 71381459 71377792 ID=MS.gene76101.t1;Parent=MS.gene76101
chr5.2 exon 71381394 71381459 71381394 ID=MS.gene76101.t1.exon1;Parent=MS.gene76101.t1
chr5.2 CDS 71381394 71381459 71381394 ID=cds.MS.gene76101.t1;Parent=MS.gene76101.t1
chr5.2 exon 71381118 71381269 71381118 ID=MS.gene76101.t1.exon2;Parent=MS.gene76101.t1
chr5.2 CDS 71381118 71381269 71381118 ID=cds.MS.gene76101.t1;Parent=MS.gene76101.t1
chr5.2 exon 71380232 71380476 71380232 ID=MS.gene76101.t1.exon3;Parent=MS.gene76101.t1
chr5.2 CDS 71380232 71380476 71380232 ID=cds.MS.gene76101.t1;Parent=MS.gene76101.t1
chr5.2 exon 71379773 71379901 71379773 ID=MS.gene76101.t1.exon4;Parent=MS.gene76101.t1
chr5.2 CDS 71379773 71379901 71379773 ID=cds.MS.gene76101.t1;Parent=MS.gene76101.t1
chr5.2 exon 71378437 71379396 71378437 ID=MS.gene76101.t1.exon5;Parent=MS.gene76101.t1
chr5.2 CDS 71378437 71379396 71378437 ID=cds.MS.gene76101.t1;Parent=MS.gene76101.t1
chr5.2 exon 71377792 71377922 71377792 ID=MS.gene76101.t1.exon6;Parent=MS.gene76101.t1
chr5.2 CDS 71377792 71377922 71377792 ID=cds.MS.gene76101.t1;Parent=MS.gene76101.t1
Gene Sequence

>MS.gene76101

ATGGAAGCTTTCAACACCATCTTCTTAACAATTTTTCTTCTCTTGGCTTCTTTAGCTAATGCTAAAGTTCATGAGCATGAGTTTGTCGTAAGTTTTTTTTATTTTTTTTAAAGCCCTTTTTATTTTTAGTTGTTAATTTAACTTTTAGGAGATTAATTATAATTAATTGGCATGTTTATTAATGTGAAAGGTACAAGCAACTCCAGTGAAGAGGCTGTGCAACACACAAATGAGCATCACTGTAAATGGACAATTTCCTGGTCCAACTTTGGAAATTAATAATGGAGATACTTTGGTTGTCAAAGTCATTAACAAAGCTCGTTACAATGTCACCATTCATTGGTAATAATATCACAAGCTAGCTAGAACTTTTTACATTCAATTTTATTTTATTTTTTTGACAAATTAGTAGCTCACTTTGCTTTTTTTTTTTTTATAAAAAAAATAAAATTATTAGATCACTTTACCCACAAGCAAGCAAACACTTTTTATATCCTTCTTCACACTTGTACTAAGAATTGATTGCAAGCTCACATTAATTATATTCCTATTAGTATATAGGAAAAGGAAATGATAGATACAGTGACAAAATTTATCAAGAAAATTTCAAGACAGTGTAATAACAAATTTAATTGGTTGAGACATTTTCTTAATAAATTCTTGATAAAAACTCTCTAGATAAATAGCAATGCTCGAAAAGGGAAATATATTAAGCATGATGATTGTAGAGTGACATTCCTTTTTTGTTTTTGATTTTTGAAATTTCCTTTTTTGTTTTCTTACACCTTCCATATAATAGTATTTTTATAGTAGGGTATGCAATTTGAGCTGTATATTTTTGAAAAAAAAAGAGTCAAGATTATTTACAACCACAATTTAAAATTTTAATGGTTTTTTCATGCATGCTATAATTTATAAAGGATCATATATATGCAAATAATCAATAATTTATGGCTTGATTTTATTGCATTTTGAATCTTTAGGCATGGGGTTAGACAAATCAGAACAGGATGGGCTGATGGACCAGAATTTGTGACTCAATGTCCTATTCGTCCTGGAGAAAGTTACACCTATCGATTTACCATTAATGGACAAGAAGGTACACTTTGGTGGCATGCTCATAGTTCATGGCTTAGAGCCACAGTTTATGGAGCTCTAATCATTCACCCTAAGGAAGGAGATGCTTATCCTTTCACTAAGCCAAAGCGTGAAACACCCATTCTTCTAGGTAATGATCATTTCATTTGACATCTAACTTTTTTTGAAGAACTTTGCAAACGTAATTATTAGATTTTTATATCTGATGTAACTGATGTGTGTAACATCGACTTGTAAAATGAAGAGTGTCATTCTTTACCAACTTATTTTAATTCTTATCTTTATTTAACGTGTGACTTAGATTTTTTTCAATTTGTTAATTAAGGATGTGATTGATATGAAATCATAAAGAAAATGAAATTATGAGATATGTTTGTCCTTTTCTTTTTAGACAAAGATTATGTTCATGATGGAGATGGTTTAACGGTGAAAATAATTATGATGATTATTTTTTAATTAGGGGAATGGTGGGATGCAAACCCTATGGATGTTGTGAGACAAGCCACACAAACAGGAGCAGCTCCAAATATATCTGATGCATACACTATTAATGGTCAACCTGGTGATCTTTACAAGTGCTCTACCAAAGGTTTGATTATTTTATGTTATTTTTTAATTTTAAGTAGATTTTTTAGTGAACTCATTATCAACATGTCACATATATGATTGATTAATTAATAAATTAAATAATTTTTTTATAAATTTACTATAGTCGAATATTTTATTTTAATTAGTTATAAGACAATCGTCAACAATTTTTCATAAAAAAAAAGTAAGCGACATTTAAAAAGACCGTATACATAATTAATTAATTGAATGAACCTAAAATATTGATTTTTGCTTATAATAGTGATCGGAGGATGTATGCAATAATAACACCTTCAATCACTTATTTAATTCTTCATGATATATGACCATGACTAAACATTTTTCCATTATTTGACATATGATCATTGGCAATGCAGGCACAACAATTGTTCCAATTGATTCAGGAGAAACAAACCTCCTAAGAGTAATCAATGCTGCACTAAATCAACCTCTTTTCTTCACAATTGCAAACCATAAACTAACAGTAGTAGGTGCTGATGCTTCCTATGTCAAACCATTCACAACCAATGTCCTCATGTTAGGACCTGGCCAAACCACTGATGTTCTAATCCAAGGTGACCAACCACCATCAAGATACTACATCGCCGGGCGCGCTTACCAATCGGCTCAAAATGCTGCGTTCGATAACACAACAACCACTGCCATTCTTGAATACAAATCATCACCTTGTCCTGCAAAGGGGGGTGCAAATATCAGACCAATCATGCCTTCATTACCTGCTTACAATGACACAAACACTGTTACATCATTTAGTAAAAGCTTTAGAAGTTTAAGGAATGTTGAAGTTCCTAATGAAATTGATGAAGATCTTTTCTTTACCATTGGATTAGGACTCAACAATTGTCCGTCGAATTTTAATGCAAATCAATGTCAAGGACCGAACGGTACACGGTTCACTTCTAGTATGAACAATGTGTCTTTTGTACTTCCTAGCAATTTTTCAATCCTGCAGGCTCATAAACTTGGAGTACAAGGTGTTTTTACGACGGATTTTCCCACAAAACCTCCCGTGCAATTTGATTACACCGGTAATGTGAGTCGGTCATTGTGGCAACCGATTCAAGGGACTAAAGTTACTAAGTTGAGATTTGGATCAAGGGTTCAGGTTGTTTTGCAAGATACTAGTATTGTTACTCCTGAGAATCACCCTATTCATCTTCATGGATATGATTTCTATATTGTTGCTGAGGGATTTGGAAATTATGACCCTAAGAAAGATGCTTCAAAATTTAACCTTGTTGATCCACCTATGAGGAACACTGTTGCTGTACCTGTTAATGGTTGGGCAGTTATCAGATTTGTTGCTGACAATCCAGGTAACATTAGCTCAATTTCAACTTTGCATTGTATAAAAAATATAATTAGGGTTAATTATGTTTTCGGTCTCTAAAAAATTAAGATTTTTTTTAAGTTTAATTCCTCCTACATAAATTTTATTCAAAATTAGTCCCTATTTTTATTAATTTTTACAAAATGGAGTACCTTTAGTCATGTACTTAGTCTCAATAAAATCAAAATAAGGACTGAAAGTGGACAATTTACGAAAAGATTAAACTCGAAAAAATTATAAATTTTATAGGGATTAAAAATATATTTAACCTTAATTTTTATGATAAAGTTTCACAAACATGATATGGATCGTGACATCAATGTCTTTGATGTTTCTGTGACCATAACTGAGGCCACATCAATTTCATTTGACTGCGATTCTCTGCAGGACCAAGTATCTATATGCGGTTGCGATATAAAACTTTGGTATAATGAAGAGAAAAAACATAATCAATTATTCAATGTTTGATCTTATGTAATTTGGTTGTTTGATGTATATAGGTGTTTGGATTATGCATTGTCACTTGGATGTTCACATTGGATGGGGTTTGGCTACTGTGTTTTTGGTAGAGGATGGAGAAGGGCTATTGGAGTCCATAGAAGCTCCTCCTGAGGACCTGCCTTTGTGTTAG
Protein sequence

>MS.gene76101.t1

MEAFNTIFLTIFLLLASLANAKVQATPVKRLCNTQMSITVNGQFPGPTLEINNGDTLVVKVINKARYNVTIHWHGVRQIRTGWADGPEFVTQCPIRPGESYTYRFTINGQEGTLWWHAHSSWLRATVYGALIIHPKEGDAYPFTKPKRETPILLGEWWDANPMDVVRQATQTGAAPNISDAYTINGQPGDLYKCSTKGTTIVPIDSGETNLLRVINAALNQPLFFTIANHKLTVVGADASYVKPFTTNVLMLGPGQTTDVLIQGDQPPSRYYIAGRAYQSAQNAAFDNTTTTAILEYKSSPCPAKGGANIRPIMPSLPAYNDTNTVTSFSKSFRSLRNVEVPNEIDEDLFFTIGLGLNNCPSNFNANQCQGPNGTRFTSSMNNVSFVLPSNFSILQAHKLGVQGVFTTDFPTKPPVQFDYTGNVSRSLWQPIQGTKVTKLRFGSRVQVVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNYDPKKDASKFNLVDPPMRNTVAVPVNGWAVIRFVADNPGVWIMHCHLDVHIGWGLATVFLVEDGEGLLESIEAPPEDLPLC