AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071950.t1 MTR_2g008330 94.991 579 29 0 1 579 1 579 0.0 1134
MS.gene071950.t1 MTR_3g101640 55.026 567 246 6 19 579 8 571 0.0 633
MS.gene071950.t1 MTR_3g101635 54.137 556 241 5 13 562 2 549 0.0 613
MS.gene071950.t1 MTR_5g083360 50.000 568 269 6 19 579 8 567 0.0 595
MS.gene071950.t1 MTR_5g073210 49.198 561 273 6 22 579 9 560 0.0 586
MS.gene071950.t1 MTR_5g020620 49.462 558 272 5 22 579 14 561 0.0 568
MS.gene071950.t1 MTR_5g069680 49.023 563 277 4 17 579 6 558 0.0 565
MS.gene071950.t1 MTR_7g458880 47.478 575 284 7 20 579 9 580 0.0 552
MS.gene071950.t1 MTR_7g062310 48.182 550 274 5 38 579 47 593 0.0 545
MS.gene071950.t1 MTR_7g062250 47.120 573 290 7 14 579 12 578 0.0 542
MS.gene071950.t1 MTR_7g058690 46.367 578 295 8 14 579 6 580 0.0 538
MS.gene071950.t1 MTR_3g462760 48.358 548 272 5 32 579 20 556 0.0 538
MS.gene071950.t1 MTR_7g060460 46.735 582 291 8 14 579 3 581 0.0 537
MS.gene071950.t1 MTR_5g020600 46.597 573 290 7 14 579 3 566 0.0 537
MS.gene071950.t1 MTR_3g071890 50.000 522 247 6 19 535 14 526 0.0 531
MS.gene071950.t1 MTR_4g015120 47.978 544 275 4 36 579 22 557 0.0 530
MS.gene071950.t1 MTR_5g081810 48.983 541 261 7 40 579 3 529 0.0 530
MS.gene071950.t1 MTR_7g065980 45.115 563 294 7 27 579 14 571 6.70e-173 502
MS.gene071950.t1 MTR_4g064530 44.384 552 299 6 19 566 25 572 2.22e-171 499
MS.gene071950.t1 MTR_4g019225 43.920 551 294 6 39 579 27 572 6.69e-168 489
MS.gene071950.t1 MTR_7g065970 42.583 573 307 8 16 579 11 570 5.29e-160 469
MS.gene071950.t1 MTR_4g064530 44.234 529 287 6 19 543 25 549 5.16e-159 466
MS.gene071950.t1 MTR_8g027375 40.722 582 316 9 16 579 1 571 3.39e-155 457
MS.gene071950.t1 MTR_8g091390 32.796 558 312 18 30 557 26 550 2.28e-74 248
MS.gene071950.t1 MTR_5g081790 44.727 275 138 6 264 537 159 420 1.83e-66 223
MS.gene071950.t1 MTR_5g081790 44.910 167 85 1 18 177 4 170 2.55e-41 155
MS.gene071950.t1 MTR_3g078740 32.849 551 300 19 53 557 41 567 1.74e-63 219
MS.gene071950.t1 MTR_3g078700 31.162 568 305 20 19 557 8 518 6.36e-61 211
MS.gene071950.t1 MTR_3g078730 30.473 571 316 17 14 557 1 517 4.05e-60 209
MS.gene071950.t1 MTR_3g115050 28.489 523 332 15 59 579 51 533 5.62e-46 170
MS.gene071950.t1 MTR_1g090707 28.330 533 343 17 52 579 38 536 2.03e-44 167
MS.gene071950.t1 MTR_4g075690 27.186 526 334 14 59 579 51 532 4.64e-42 159
MS.gene071950.t1 MTR_1g026410 26.616 526 338 13 59 579 50 532 1.08e-40 155
MS.gene071950.t1 MTR_8g479390 27.547 530 321 18 42 559 35 513 3.01e-40 154
MS.gene071950.t1 MTR_3g008580 25.271 554 350 15 13 544 5 516 1.02e-39 153
MS.gene071950.t1 MTR_4g101650 25.480 573 388 14 17 579 6 549 3.71e-39 152
MS.gene071950.t1 MTR_8g479380 27.273 506 319 15 59 559 50 511 6.88e-38 147
MS.gene071950.t1 MTR_4g049390 25.285 526 345 14 59 579 48 530 1.39e-37 146
MS.gene071950.t1 MTR_2g088080 25.391 575 378 15 13 579 2 533 1.32e-36 144
MS.gene071950.t1 MTR_4g075690 27.727 440 270 13 59 493 51 447 2.66e-35 138
MS.gene071950.t1 MTR_4g048350 25.285 526 344 16 59 579 48 529 6.01e-35 139
MS.gene071950.t1 MTR_4g132320 27.725 523 336 15 59 579 52 534 6.33e-34 136
MS.gene071950.t1 MTR_8g073840 37.097 186 78 4 32 216 24 171 3.36e-32 126
MS.gene071950.t1 MTR_5g018270 25.048 523 320 16 52 559 45 510 3.52e-31 127
MS.gene071950.t1 MTR_3g083390 24.020 587 378 19 16 574 1 547 8.78e-31 127
MS.gene071950.t1 MTR_3g083400 24.490 588 374 19 16 574 1 547 1.58e-30 126
MS.gene071950.t1 MTR_3g083440 24.020 587 378 19 16 574 1 547 1.81e-30 125
MS.gene071950.t1 MTR_3g083450 24.199 562 360 18 39 574 27 548 2.65e-30 125
MS.gene071950.t1 MTR_3g083430 23.196 582 389 17 16 574 1 547 1.31e-29 123
MS.gene071950.t1 MTR_4g083210 26.265 514 323 18 56 559 44 511 2.02e-29 122
MS.gene071950.t1 MTR_3g083410 24.494 543 342 18 59 574 10 511 7.39e-29 120
MS.gene071950.t1 MTR_7g051440 25.100 498 334 15 56 544 47 514 9.10e-27 115
MS.gene071950.t1 MTR_4g083190 24.858 527 336 18 56 569 45 524 2.98e-26 113
MS.gene071950.t1 MTR_2g088080 24.646 495 325 13 90 579 1 452 3.78e-26 112
MS.gene071950.t1 MTR_7g058670 46.914 81 42 1 95 174 13 93 2.04e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071950.t1 AT5G09360 66.608 566 179 4 15 579 13 569 0.0 806
MS.gene071950.t1 AT5G05390 49.479 576 276 5 8 579 1 565 0.0 595
MS.gene071950.t1 AT2G30210 48.532 579 282 9 8 579 1 570 0.0 575
MS.gene071950.t1 AT2G40370 46.632 579 291 4 15 579 6 580 0.0 574
MS.gene071950.t1 AT5G48100 50.000 554 265 9 22 569 6 553 0.0 563
MS.gene071950.t1 AT5G07130 47.811 571 279 10 19 579 8 569 0.0 554
MS.gene071950.t1 AT2G29130 47.028 572 292 7 16 579 5 573 0.0 546
MS.gene071950.t1 AT2G38080 47.163 564 288 5 16 579 5 558 0.0 542
MS.gene071950.t1 AT5G58910 46.903 565 291 4 16 579 11 567 0.0 541
MS.gene071950.t1 AT5G58910 46.903 565 290 5 16 579 11 566 0.0 539
MS.gene071950.t1 AT5G60020 47.130 575 287 7 19 579 6 577 0.0 538
MS.gene071950.t1 AT1G18140 47.368 551 275 5 42 579 33 581 0.0 537
MS.gene071950.t1 AT5G03260 46.881 561 288 5 19 579 7 557 0.0 529
MS.gene071950.t1 AT5G60020 48.346 544 264 7 50 579 5 545 0.0 528
MS.gene071950.t1 AT5G58910 47.646 531 265 4 50 579 5 523 6.06e-179 516
MS.gene071950.t1 AT5G01190 46.263 562 292 5 20 579 5 558 7.36e-179 517
MS.gene071950.t1 AT5G01190 47.619 525 267 4 55 579 28 544 5.93e-172 499
MS.gene071950.t1 AT2G46570 43.134 568 308 6 17 579 12 569 1.74e-166 486
MS.gene071950.t1 AT5G60020 46.529 533 268 7 19 537 6 535 2.34e-164 479
MS.gene071950.t1 AT3G09220 42.883 548 303 4 20 562 8 550 2.04e-163 478
MS.gene071950.t1 AT5G07130 47.347 490 242 9 100 579 1 484 6.04e-160 466
MS.gene071950.t1 AT5G07130 47.347 490 242 9 100 579 1 484 6.04e-160 466
MS.gene071950.t1 AT5G01050 41.873 566 308 7 24 579 14 568 6.33e-157 462
MS.gene071950.t1 AT5G01040 40.663 573 323 9 15 579 3 566 6.45e-153 451
MS.gene071950.t1 AT2G46570 43.061 490 265 5 95 579 4 484 7.62e-143 422
MS.gene071950.t1 AT3G09220 44.201 457 245 4 111 562 2 453 1.29e-136 406
MS.gene071950.t1 AT5G21105 31.588 592 336 18 1 557 1 558 2.83e-75 250
MS.gene071950.t1 AT4G39830 31.834 578 323 20 16 557 18 560 7.32e-75 249
MS.gene071950.t1 AT5G21100 30.880 557 325 17 31 558 17 542 1.41e-69 235
MS.gene071950.t1 AT5G21105 30.769 572 327 18 1 537 1 538 5.13e-66 224
MS.gene071950.t1 AT4G39830 30.505 495 276 19 99 557 3 465 7.23e-53 188
MS.gene071950.t1 AT4G39830 30.550 491 273 19 103 557 5 463 3.89e-52 186
MS.gene071950.t1 AT4G39830 29.735 491 272 17 99 557 3 452 4.37e-50 180
MS.gene071950.t1 AT1G76160 25.565 575 380 16 8 579 1 530 5.54e-43 162
MS.gene071950.t1 AT5G21105 33.528 343 190 9 225 557 53 367 6.79e-43 158
MS.gene071950.t1 AT1G41830 26.326 528 336 16 59 579 50 531 2.87e-40 154
MS.gene071950.t1 AT5G66920 25.843 534 336 15 56 579 55 538 7.62e-40 153
MS.gene071950.t1 AT1G75790 25.550 591 359 17 16 579 5 541 1.12e-39 152
MS.gene071950.t1 AT1G21850 25.981 535 345 13 20 548 11 500 2.21e-39 152
MS.gene071950.t1 AT4G22010 26.792 530 333 16 59 579 47 530 1.00e-37 147
MS.gene071950.t1 AT5G51480 26.095 525 354 14 56 572 46 544 2.28e-37 146
MS.gene071950.t1 AT1G21860 25.560 536 350 16 18 548 9 500 1.20e-35 141
MS.gene071950.t1 AT4G12420 24.067 536 374 11 16 544 3 512 1.32e-34 138
MS.gene071950.t1 AT4G12420 24.067 536 374 11 16 544 3 512 1.32e-34 138
MS.gene071950.t1 AT4G28090 24.390 533 344 13 59 579 49 534 2.21e-34 137
MS.gene071950.t1 AT5G48450 25.234 535 352 18 52 578 43 537 1.64e-33 135
MS.gene071950.t1 AT4G25240 24.910 554 355 15 40 572 31 544 2.53e-33 135
MS.gene071950.t1 AT4G25240 24.910 554 355 15 40 572 31 544 2.53e-33 135
MS.gene071950.t1 AT5G48450 25.234 535 352 18 52 578 43 537 3.33e-33 134
MS.gene071950.t1 AT4G37160 26.136 528 344 15 56 579 49 534 3.78e-31 127
MS.gene071950.t1 AT4G38420 25.873 487 327 13 59 544 51 504 5.21e-31 127
MS.gene071950.t1 AT3G13390 26.275 510 328 15 39 539 29 499 6.92e-30 124
MS.gene071950.t1 AT2G23630 25.285 526 350 13 56 579 53 537 1.42e-28 120
MS.gene071950.t1 AT2G23630 25.285 526 350 13 56 579 48 532 1.54e-28 120
MS.gene071950.t1 AT4G38420 25.636 472 301 14 59 521 51 481 6.49e-27 115
MS.gene071950.t1 AT1G55570 25.000 532 355 16 15 539 6 500 4.80e-26 112
MS.gene071950.t1 AT1G55560 24.299 535 370 15 15 547 4 505 5.63e-25 109
MS.gene071950.t1 AT4G38420 25.450 444 282 13 59 493 51 454 6.24e-25 108
MS.gene071950.t1 AT4G37160 25.792 442 283 13 56 493 49 449 3.45e-23 103
MS.gene071950.t1 AT3G13400 24.795 488 328 15 56 539 45 497 1.41e-22 102
MS.gene071950.t1 AT3G13400 24.795 488 328 15 56 539 45 497 1.41e-22 102

Find 126 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATGTTTCCTGGTTTAAT+TGG 0.126373 2.4:-74680719 None:intergenic
AAGAACATCTTGACGGTAAA+TGG 0.152634 2.4:+74679258 MS.gene071950:CDS
GTTGGGTTGCTATCAGATTT+AGG 0.156559 2.4:+74682448 MS.gene071950:CDS
AATTCCCTTGTTGGAATTCT+TGG 0.186318 2.4:-74682159 None:intergenic
TATGTGGTTGGTTGGGGTTT+TGG 0.190101 2.4:+74682342 MS.gene071950:CDS
ATAGCAACCCAACCATTATT+TGG 0.228060 2.4:-74682438 None:intergenic
AACTACAAGTCTTAACATTT+AGG 0.277607 2.4:-74682920 None:intergenic
TGGCACAAAGGTGTTGGTTT+TGG 0.288255 2.4:+74682230 MS.gene071950:CDS
TTGGGTTGCTATCAGATTTA+GGG 0.298637 2.4:+74682449 MS.gene071950:CDS
GGGCACTGTGTTATGTATTC+AGG 0.301563 2.4:-74680698 None:intergenic
AGATCATACTCTAGTGCTTT+TGG 0.308424 2.4:+74681763 MS.gene071950:CDS
TAGTTTCTATGTGGTTGGTT+GGG 0.309756 2.4:+74682335 MS.gene071950:CDS
ACCTCTTGGTCATTATTTCA+TGG 0.311028 2.4:+74681735 MS.gene071950:CDS
TTCAAGATGATTGTGGACTA+TGG 0.317009 2.4:+74681535 MS.gene071950:CDS
ACGGTAAATGGGCAATTTCC+TGG 0.329717 2.4:+74679270 MS.gene071950:CDS
AGCATTTGAGTTTGAGGATT+AGG 0.337232 2.4:-74682878 None:intergenic
GATCACACCTGGTCAATCTA+TGG 0.338540 2.4:+74681690 MS.gene071950:CDS
TCAATCTATGGACATTCTAT+TGG 0.340479 2.4:+74681702 MS.gene071950:CDS
ATTTACCGTCAAGATGTTCT+TGG 0.347797 2.4:-74679256 None:intergenic
GCACTAAGAAAATCAATATA+TGG 0.350049 2.4:-74682096 None:intergenic
GAGTGAGTACCTAGTATAAT+TGG 0.350857 2.4:-74680890 None:intergenic
GTATATGCATTTGATAGAAT+TGG 0.350961 2.4:-74681291 None:intergenic
CCAACTGTGGTTTCCTTTGG+TGG 0.352870 2.4:-74682411 None:intergenic
AAGTAGCATGTCGCTCTATA+TGG 0.364785 2.4:-74682820 None:intergenic
AATCCCTGGTGTATTTGAAA+TGG 0.369144 2.4:+74682131 MS.gene071950:CDS
ATAGTTTCTATGTGGTTGGT+TGG 0.375505 2.4:+74682334 MS.gene071950:CDS
GGGATAAGTGTGTCCAGGTT+TGG 0.377288 2.4:-74680843 None:intergenic
CTATATCCATGCAAATGAAC+AGG 0.381209 2.4:-74682315 None:intergenic
GGAGGAAGTTGAGGAAGAAT+AGG 0.387792 2.4:-74681862 None:intergenic
CTTCTGATTCATACTGCAAA+TGG 0.389617 2.4:+74679086 MS.gene071950:CDS
ACTCCAACTGTGGTTTCCTT+TGG 0.389728 2.4:-74682414 None:intergenic
ATTTGTTTGAACATGTTTCC+TGG 0.392779 2.4:-74680728 None:intergenic
GGATAAGTGTGTCCAGGTTT+GGG 0.396428 2.4:-74680842 None:intergenic
CCAAATGTAGCAAACAAAAC+TGG 0.402762 2.4:+74681261 MS.gene071950:CDS
AGTTTCTATGTGGTTGGTTG+GGG 0.402880 2.4:+74682336 MS.gene071950:CDS
TTGACAGTAGTTGGTAAAGA+TGG 0.411673 2.4:+74681631 MS.gene071950:CDS
GGTGGAAGCATTTGAGTTTG+AGG 0.412050 2.4:-74682884 None:intergenic
GCACCGGTCCGTTCGGCAAA+AGG 0.412322 2.4:+74682037 MS.gene071950:CDS
TGCTACTTGGGGAATGAGTA+TGG 0.412639 2.4:+74682835 MS.gene071950:CDS
TTTGCCGAACGGACCGGTGC+AGG 0.415932 2.4:-74682034 None:intergenic
CCTCTATGAGCTTTCAATGT+TGG 0.425691 2.4:-74679294 None:intergenic
ACATGTTTCCTGGTTTAATT+GGG 0.426379 2.4:-74680718 None:intergenic
ATCATTAGGCTAGGATCATA+TGG 0.438368 2.4:-74679008 None:intergenic
ACTTGTTGGAGACCATCATT+AGG 0.441748 2.4:-74679022 None:intergenic
ATAACCAGGTTGACCATTGA+TGG 0.442649 2.4:-74681313 None:intergenic
TAACATTTAGGTAAATCCTT+AGG 0.443240 2.4:-74682908 None:intergenic
AATCACAAATTGACAGTAGT+TGG 0.447685 2.4:+74681622 MS.gene071950:CDS
ATATAGAGCGACATGCTACT+TGG 0.451287 2.4:+74682822 MS.gene071950:CDS
GGAACCTCAGCATGAGGTCT+AGG 0.453899 2.4:-74680869 None:intergenic
GTGTAATTGAATTCCCTTGT+TGG 0.454393 2.4:-74682168 None:intergenic
AAACCCTGCACCGGTCCGTT+CGG 0.454937 2.4:+74682030 MS.gene071950:CDS
TGGGCAAGAGCTACAGTTCA+TGG 0.456344 2.4:+74680803 MS.gene071950:CDS
ACAGTTGGAGTACCAAATAA+TGG 0.463114 2.4:+74682426 MS.gene071950:CDS
AGAACATCTTGACGGTAAAT+GGG 0.476613 2.4:+74679259 MS.gene071950:CDS
AATCACCCTGTTCATTTGCA+TGG 0.478004 2.4:+74682309 MS.gene071950:CDS
TCAAATGCATATACCATCAA+TGG 0.479246 2.4:+74681300 MS.gene071950:CDS
GGATATAGTTTCTATGTGGT+TGG 0.486226 2.4:+74682330 MS.gene071950:CDS
TTGTTATGTTATAATTTGCC+TGG 0.490301 2.4:-74679344 None:intergenic
TCAAATGCTTCCACCTCCTA+AGG 0.492337 2.4:+74682892 MS.gene071950:CDS
TGGAGTACCAAATAATGGTT+GGG 0.492921 2.4:+74682431 MS.gene071950:CDS
TATAGAGCGACATGCTACTT+GGG 0.492933 2.4:+74682823 MS.gene071950:CDS
CCACAGAAGAAGGAACAATA+TGG 0.493286 2.4:+74680762 MS.gene071950:CDS
TTGCCGAACGGACCGGTGCA+GGG 0.495451 2.4:-74682033 None:intergenic
TTGTTGTAAGGAGGAAGTTG+AGG 0.498355 2.4:-74681871 None:intergenic
CCATATTGTTCCTTCTTCTG+TGG 0.503475 2.4:-74680762 None:intergenic
TTGGAAGCAAATCAACCTCT+TGG 0.504372 2.4:+74681721 MS.gene071950:CDS
GCCTATTATTATAAAATCCC+TGG 0.505256 2.4:+74682117 MS.gene071950:CDS
ATCATTTGGCACAAAGGTGT+TGG 0.508419 2.4:+74682224 MS.gene071950:CDS
TTGGAGTACCAAATAATGGT+TGG 0.516173 2.4:+74682430 MS.gene071950:CDS
AGTTCACCATCACAAGTTTG+TGG 0.516238 2.4:+74679112 MS.gene071950:CDS
GCTGAGGTTCCAATTATACT+AGG 0.523541 2.4:+74680881 MS.gene071950:CDS
CATTTAGGTAAATCCTTAGG+AGG 0.524548 2.4:-74682905 None:intergenic
TTAGGTAAATCCTTAGGAGG+TGG 0.526806 2.4:-74682902 None:intergenic
GTACATTTGACCACAGAAGA+AGG 0.530014 2.4:+74680752 MS.gene071950:CDS
TTCATCATTGTGTAGGAGAG+TGG 0.531122 2.4:+74681214 MS.gene071950:intron
GATTATTATGATCAGGTATG+TGG 0.532303 2.4:+74682786 MS.gene071950:intron
ATATGGTGGCATGCACATAA+TGG 0.535939 2.4:+74680779 MS.gene071950:CDS
AGATTTAGGGCTAATAATCC+AGG 0.536934 2.4:+74682462 MS.gene071950:CDS
AGATACTTTCAAGATGATTG+TGG 0.540499 2.4:+74681528 MS.gene071950:intron
TAATACCAAGAACATCTTGA+CGG 0.543194 2.4:+74679251 MS.gene071950:CDS
TTGGAGACCATCATTAGGCT+AGG 0.543627 2.4:-74679017 None:intergenic
ATTATTTGGTACTCCAACTG+TGG 0.545073 2.4:-74682424 None:intergenic
TCAGCATGAGGTCTAGGAAA+GGG 0.546258 2.4:-74680863 None:intergenic
TAGAATAATCAATGCAGTAA+TGG 0.547126 2.4:+74681573 MS.gene071950:CDS
ATATGATCCTAGCCTAATGA+TGG 0.553978 2.4:+74679010 MS.gene071950:CDS
GTCATCATTTATCCCAAACC+TGG 0.555922 2.4:+74680830 MS.gene071950:CDS
GTGGCATGCACATAATGGTT+GGG 0.556314 2.4:+74680784 MS.gene071950:CDS
GGAAAGGGATAAGTGTGTCC+AGG 0.561390 2.4:-74680848 None:intergenic
GTGAGGAATCCATGGTCAGA+TGG 0.564085 2.4:+74680674 MS.gene071950:CDS
TGAGCTTTCAATGTTGGACC+AGG 0.567139 2.4:-74679288 None:intergenic
ATATATAAGTAAAGCTGTTG+TGG 0.568070 2.4:-74681806 None:intergenic
CAAGACAAGTGAGGAATCCA+TGG 0.569953 2.4:+74680666 MS.gene071950:CDS
AGGAGATACACTTGTAGTCA+AGG 0.571698 2.4:+74679314 MS.gene071950:CDS
GTGTTGAGCTTGTACTGCAA+GGG 0.574618 2.4:+74682265 MS.gene071950:CDS
TATACCATCAATGGTCAACC+TGG 0.579809 2.4:+74681309 MS.gene071950:CDS
ATGGTGTTTCTAGTGAAAGA+TGG 0.581134 2.4:+74682854 MS.gene071950:CDS
GAGCAGGGATATAGATAACC+AGG 0.581388 2.4:-74681327 None:intergenic
ATCATTGTGTAGGAGAGTGG+TGG 0.583215 2.4:+74681217 MS.gene071950:intron
AAATCCATTTCAAATACACC+AGG 0.587085 2.4:-74682135 None:intergenic
ATTATAACATAACAATACAT+TGG 0.589097 2.4:+74679352 MS.gene071950:CDS
CCACCAAAGGAAACCACAGT+TGG 0.591065 2.4:+74682411 MS.gene071950:CDS
CACATACCACAAACTTGTGA+TGG 0.592974 2.4:-74679118 None:intergenic
GTGGTGGAAAGAACAAGTAA+TGG 0.600140 2.4:+74681233 MS.gene071950:CDS
CTTTCCTAGACCTCATGCTG+AGG 0.607483 2.4:+74680865 MS.gene071950:CDS
CCAACATTGAAAGCTCATAG+AGG 0.607627 2.4:+74679294 MS.gene071950:CDS
CTCAGCATGAGGTCTAGGAA+AGG 0.608161 2.4:-74680864 None:intergenic
AGTGTTTGGTTGCAGGCATG+GGG 0.609053 2.4:+74680643 MS.gene071950:intron
GCATGGATATAGTTTCTATG+TGG 0.621455 2.4:+74682326 MS.gene071950:CDS
GGTGGCATGCACATAATGGT+TGG 0.624194 2.4:+74680783 MS.gene071950:CDS
TAATCTTATTGATCCACCAA+AGG 0.624353 2.4:+74682398 MS.gene071950:CDS
GAGTACATCATTTGGCACAA+AGG 0.625602 2.4:+74682218 MS.gene071950:CDS
TGTAGTCAAGGTCTATAACC+AGG 0.630200 2.4:+74679326 MS.gene071950:CDS
AGTGTTGAGCTTGTACTGCA+AGG 0.646230 2.4:+74682264 MS.gene071950:CDS
TATATCCATGCAAATGAACA+GGG 0.648533 2.4:-74682314 None:intergenic
GCCATGAAATAATGACCAAG+AGG 0.649971 2.4:-74681736 None:intergenic
ATAGAGCGACATGCTACTTG+GGG 0.653094 2.4:+74682824 MS.gene071950:CDS
ATAATTGGAACCTCAGCATG+AGG 0.653847 2.4:-74680875 None:intergenic
ACTCAAGATAAACCCTGCAC+CGG 0.659837 2.4:+74682021 MS.gene071950:CDS
ACACAGTGCCCAATTAAACC+AGG 0.662581 2.4:+74680710 MS.gene071950:CDS
TATTCAGGTCCATCTGACCA+TGG 0.664643 2.4:-74680683 None:intergenic
GATTACATAATGATCACACC+TGG 0.671979 2.4:+74681679 MS.gene071950:CDS
AATGTAGCAAACAAAACTGG+AGG 0.677923 2.4:+74681264 MS.gene071950:CDS
CAGAAGAAGGAACAATATGG+TGG 0.689108 2.4:+74680765 MS.gene071950:CDS
AATCCATTTCAAATACACCA+GGG 0.690337 2.4:-74682134 None:intergenic
AGAATGTCCATAGATTGACC+AGG 0.715860 2.4:-74681697 None:intergenic
GGCATGGGGCAAGACAAGTG+AGG 0.729322 2.4:+74680657 MS.gene071950:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAGTACAAATTATA+TGG - chr2.4:74679394-74679413 None:intergenic 10.0%
!!! AATTTTAAAGAAATTAATAG+GGG - chr2.4:74679558-74679577 None:intergenic 10.0%
!!! GTAATTTTAAAGAAATTAAT+AGG - chr2.4:74679560-74679579 None:intergenic 10.0%
!!! GTTTTCAAAAATAAAAATTT+GGG + chr2.4:74679467-74679486 MS.gene071950:intron 10.0%
!!! TGTTTTCAAAAATAAAAATT+TGG + chr2.4:74679466-74679485 MS.gene071950:intron 10.0%
!!! TTTTAAACTCTTAAAAAATA+TGG + chr2.4:74679877-74679896 MS.gene071950:intron 10.0%
!!! TTTTTGAAAACAAATAAATT+TGG - chr2.4:74679458-74679477 None:intergenic 10.0%
!!! TTTTTTATCAAAAACTTAAT+TGG - chr2.4:74680445-74680464 None:intergenic 10.0%
!! AATATTTGATTATTATGATC+AGG + chr2.4:74682779-74682798 MS.gene071950:intron 15.0%
!! ATGTAATTTAGTTATATCAA+TGG + chr2.4:74680575-74680594 MS.gene071950:intron 15.0%
!! ATTATAACATAACAATACAT+TGG + chr2.4:74679352-74679371 MS.gene071950:CDS 15.0%
!! CTAAAATAAGACAAAATATT+GGG + chr2.4:74681173-74681192 MS.gene071950:intron 15.0%
!!! ATCAATAAGATTATAGTTTT+TGG - chr2.4:74682391-74682410 None:intergenic 15.0%
!!! ATTATGTAATCTGTTTTTAT+TGG - chr2.4:74681670-74681689 None:intergenic 15.0%
!!! ATTTTAAAGAAATTAATAGG+GGG - chr2.4:74679557-74679576 None:intergenic 15.0%
!!! GTTTTTATCTTTAATGTATT+TGG + chr2.4:74680514-74680533 MS.gene071950:intron 15.0%
!!! TCAATAAGATTATAGTTTTT+GGG - chr2.4:74682390-74682409 None:intergenic 15.0%
!!! TCTAAAATAAGACAAAATAT+TGG + chr2.4:74681172-74681191 MS.gene071950:intron 15.0%
!!! TGTTATTTTCACTAATAAAT+TGG + chr2.4:74680153-74680172 MS.gene071950:intron 15.0%
!!! TTTTGATAAAAAATAGTCAT+CGG + chr2.4:74680452-74680471 MS.gene071950:intron 15.0%
!!! TTTTGTCTTATTTTAGATTT+TGG - chr2.4:74681169-74681188 None:intergenic 15.0%
!!! TTTTTTATGATGTGATATAA+AGG - chr2.4:74681093-74681112 None:intergenic 15.0%
!! AAAGTACAAATTATATGGTT+TGG - chr2.4:74679389-74679408 None:intergenic 20.0%
!! AAGTACAAATTATATGGTTT+GGG - chr2.4:74679388-74679407 None:intergenic 20.0%
!! ACTACAAAAAAAAACTAAGA+CGG - chr2.4:74679788-74679807 None:intergenic 20.0%
!! CATAAAATATACATTCCTTT+AGG + chr2.4:74680000-74680019 MS.gene071950:intron 20.0%
!! TAGAAATAAAAAACGTGATT+AGG + chr2.4:74680396-74680415 MS.gene071950:intron 20.0%
!!! AAAATATGATTTGATAGTGT+AGG - chr2.4:74681373-74681392 None:intergenic 20.0%
!!! GTTCAAGATGTTAAAATTTT+TGG + chr2.4:74679043-74679062 MS.gene071950:CDS 20.0%
!!! TATTTTTTGAGTACATCATT+TGG + chr2.4:74682210-74682229 MS.gene071950:CDS 20.0%
!!! TGATATAAAGGTACTTATAA+TGG - chr2.4:74681081-74681100 None:intergenic 20.0%
! AAAATAACAAGTTCCAAATC+TGG - chr2.4:74680142-74680161 None:intergenic 25.0%
! AAGTATCTATAAACATCACA+AGG - chr2.4:74681516-74681535 None:intergenic 25.0%
! AATGCATTAGATTCATTTGA+AGG + chr2.4:74680077-74680096 MS.gene071950:intron 25.0%
! AGTAAACTGTAAAAATTTGG+TGG + chr2.4:74680053-74680072 MS.gene071950:intron 25.0%
! ATATATAAGTAAAGCTGTTG+TGG - chr2.4:74681809-74681828 None:intergenic 25.0%
! ATGCATTAGATTCATTTGAA+GGG + chr2.4:74680078-74680097 MS.gene071950:intron 25.0%
! ATGTATTCAGCCATATAAAA+AGG - chr2.4:74680921-74680940 None:intergenic 25.0%
! GAGAGTAAACTGTAAAAATT+TGG + chr2.4:74680050-74680069 MS.gene071950:intron 25.0%
! GATGTACTCAAAAAATATTC+TGG - chr2.4:74682207-74682226 None:intergenic 25.0%
! GCACTAAGAAAATCAATATA+TGG - chr2.4:74682099-74682118 None:intergenic 25.0%
! GTATATGCATTTGATAGAAT+TGG - chr2.4:74681294-74681313 None:intergenic 25.0%
! TAAATCACGTCTTAAACATT+AGG - chr2.4:74680292-74680311 None:intergenic 25.0%
! TAACATTTAGGTAAATCCTT+AGG - chr2.4:74682911-74682930 None:intergenic 25.0%
! TAGAATAATCAATGCAGTAA+TGG + chr2.4:74681573-74681592 MS.gene071950:CDS 25.0%
! TAGATTTATGATATTGATCG+TGG + chr2.4:74680241-74680260 MS.gene071950:intron 25.0%
! TGGCATAAAAATGAGTTATT+AGG - chr2.4:74681061-74681080 None:intergenic 25.0%
! TGTATTCAGCCATATAAAAA+GGG - chr2.4:74680920-74680939 None:intergenic 25.0%
!! ACCAGGGATTTTATAATAAT+AGG - chr2.4:74682121-74682140 None:intergenic 25.0%
!! ACTTTTGTAGGAACATTTAT+TGG - chr2.4:74681955-74681974 None:intergenic 25.0%
!! ATAAAAATTTGGGTTCAACT+TGG + chr2.4:74679477-74679496 MS.gene071950:intron 25.0%
!! TGTCAATTTGTGATTTTCAA+TGG - chr2.4:74681617-74681636 None:intergenic 25.0%
!! TTGTTATGTTATAATTTGCC+TGG - chr2.4:74679347-74679366 None:intergenic 25.0%
!! TTTGTTAGTCTGAGTTAAAT+TGG + chr2.4:74680334-74680353 MS.gene071950:intron 25.0%
!! TTTTAACATCTTGAACTTGT+TGG - chr2.4:74679039-74679058 None:intergenic 25.0%
!!! GTCTTAGTTTTTTTTTGTAG+TGG + chr2.4:74679787-74679806 MS.gene071950:intron 25.0%
!!! GTTGGACATTTTGAAAATTA+AGG + chr2.4:74681142-74681161 MS.gene071950:intron 25.0%
!!! TAGTTTTTGGGATCTTTTTT+AGG - chr2.4:74682378-74682397 None:intergenic 25.0%
!!! TAGTTTTTTTTTGTAGTGGT+CGG + chr2.4:74679791-74679810 MS.gene071950:intron 25.0%
!!! TATGATTGATTAGAAGTGTT+TGG + chr2.4:74680629-74680648 MS.gene071950:intron 25.0%
AAAATGTTGGGACATTAGAA+GGG - chr2.4:74680317-74680336 None:intergenic 30.0%
AAATCCATTTCAAATACACC+AGG - chr2.4:74682138-74682157 None:intergenic 30.0%
AACATGTTTCCTGGTTTAAT+TGG - chr2.4:74680722-74680741 None:intergenic 30.0%
AACTCAGACTAACAAAATGT+TGG - chr2.4:74680330-74680349 None:intergenic 30.0%
AATCACAAATTGACAGTAGT+TGG + chr2.4:74681622-74681641 MS.gene071950:CDS 30.0%
AATCCATTTCAAATACACCA+GGG - chr2.4:74682137-74682156 None:intergenic 30.0%
AATGTTTGAAAAAGTTCACC+TGG - chr2.4:74682483-74682502 None:intergenic 30.0%
ACAAGGAAAAACTAATGTTC+AGG - chr2.4:74681499-74681518 None:intergenic 30.0%
ACATGTTTCCTGGTTTAATT+GGG - chr2.4:74680721-74680740 None:intergenic 30.0%
ACTAACACAGTATATATGCA+AGG - chr2.4:74679832-74679851 None:intergenic 30.0%
ACTCAGACTAACAAAATGTT+GGG - chr2.4:74680329-74680348 None:intergenic 30.0%
AGATACTTTCAAGATGATTG+TGG + chr2.4:74681528-74681547 MS.gene071950:intron 30.0%
ATCGTAGAAAGTCAAAATTG+AGG - chr2.4:74680982-74681001 None:intergenic 30.0%
ATTTGTTTGAACATGTTTCC+TGG - chr2.4:74680731-74680750 None:intergenic 30.0%
CAAGGAAAAACTAATGTTCA+GGG - chr2.4:74681498-74681517 None:intergenic 30.0%
CATAACAATACATTGGTATG+TGG + chr2.4:74679359-74679378 MS.gene071950:intron 30.0%
CGTAAATGAGACAGAATAAA+AGG - chr2.4:74680951-74680970 None:intergenic 30.0%
CTAGTGCATTTGTATTCTTT+GGG + chr2.4:74679507-74679526 MS.gene071950:intron 30.0%
GATTATTATGATCAGGTATG+TGG + chr2.4:74682786-74682805 MS.gene071950:intron 30.0%
GCCTATTATTATAAAATCCC+TGG + chr2.4:74682117-74682136 MS.gene071950:CDS 30.0%
GTATTCTTTGGGCATAATTT+GGG + chr2.4:74679518-74679537 MS.gene071950:intron 30.0%
TAATACCAAGAACATCTTGA+CGG + chr2.4:74679251-74679270 MS.gene071950:CDS 30.0%
TAATCATATATACCGACAAG+AGG - chr2.4:74681439-74681458 None:intergenic 30.0%
TAATCTTATTGATCCACCAA+AGG + chr2.4:74682398-74682417 MS.gene071950:CDS 30.0%
TATATCCATGCAAATGAACA+GGG - chr2.4:74682317-74682336 None:intergenic 30.0%
TCAAATGCATATACCATCAA+TGG + chr2.4:74681300-74681319 MS.gene071950:CDS 30.0%
TCAATCTATGGACATTCTAT+TGG + chr2.4:74681702-74681721 MS.gene071950:CDS 30.0%
TCTCTATCACTAACTTATGA+TGG + chr2.4:74679151-74679170 MS.gene071950:intron 30.0%
TGATCGTGGAGTAATTATTT+AGG + chr2.4:74680255-74680274 MS.gene071950:intron 30.0%
TGTATTCTTTGGGCATAATT+TGG + chr2.4:74679517-74679536 MS.gene071950:intron 30.0%
TTATTCTTATGAGCCAGATT+TGG + chr2.4:74680126-74680145 MS.gene071950:intron 30.0%
! AAATGTGTGTCAACTTTTGT+AGG - chr2.4:74681967-74681986 None:intergenic 30.0%
! AACATATCGCATTTTGCTTT+TGG - chr2.4:74682665-74682684 None:intergenic 30.0%
! AATCAAAGAGAGTGTGTTAA+AGG + chr2.4:74681397-74681416 MS.gene071950:intron 30.0%
! ATTTTCCAAGAATTCCAACA+AGG + chr2.4:74682154-74682173 MS.gene071950:CDS 30.0%
! TGACATTTTCATCATTGTGT+AGG + chr2.4:74681207-74681226 MS.gene071950:intron 30.0%
! TTCTGTCTCATTTACGATTT+TGG + chr2.4:74680955-74680974 MS.gene071950:intron 30.0%
! TTTTCCAAGAATTCCAACAA+GGG + chr2.4:74682155-74682174 MS.gene071950:CDS 30.0%
! TTTTCCCATCTATGCATTTA+GGG - chr2.4:74681120-74681139 None:intergenic 30.0%
! TTTTTCCCATCTATGCATTT+AGG - chr2.4:74681121-74681140 None:intergenic 30.0%
!! ATATGATTTGATAGTGTAGG+AGG - chr2.4:74681370-74681389 None:intergenic 30.0%
!! GATTTTAGTCTTTCAACGTA+AGG + chr2.4:74682566-74682585 MS.gene071950:intron 30.0%
!! TATGATTTGATAGTGTAGGA+GGG - chr2.4:74681369-74681388 None:intergenic 30.0%
!! TCTTTAAAATTACACCCTAC+CGG + chr2.4:74679567-74679586 MS.gene071950:intron 30.0%
!!! AGTTTTTTTTTGTAGTGGTC+GGG + chr2.4:74679792-74679811 MS.gene071950:intron 30.0%
!!! GCTTTTTTTTGTGATGATGA+TGG - chr2.4:74681843-74681862 None:intergenic 30.0%
AAGAACATCTTGACGGTAAA+TGG + chr2.4:74679258-74679277 MS.gene071950:CDS 35.0%
AATCCCTGGTGTATTTGAAA+TGG + chr2.4:74682131-74682150 MS.gene071950:CDS 35.0%
AATGTAGCAAACAAAACTGG+AGG + chr2.4:74681264-74681283 MS.gene071950:CDS 35.0%
AATTCCCTTGTTGGAATTCT+TGG - chr2.4:74682162-74682181 None:intergenic 35.0%
ACCTCTTGGTCATTATTTCA+TGG + chr2.4:74681735-74681754 MS.gene071950:CDS 35.0%
AGAACATCTTGACGGTAAAT+GGG + chr2.4:74679259-74679278 MS.gene071950:CDS 35.0%
ATAGCAACCCAACCATTATT+TGG - chr2.4:74682441-74682460 None:intergenic 35.0%
ATAGTTTCTATGTGGTTGGT+TGG + chr2.4:74682334-74682353 MS.gene071950:CDS 35.0%
ATATGATCCTAGCCTAATGA+TGG + chr2.4:74679010-74679029 MS.gene071950:CDS 35.0%
ATCAACCCTAAATGCATAGA+TGG + chr2.4:74681112-74681131 MS.gene071950:intron 35.0%
ATCATTAGGCTAGGATCATA+TGG - chr2.4:74679011-74679030 None:intergenic 35.0%
ATTATTTGGTACTCCAACTG+TGG - chr2.4:74682427-74682446 None:intergenic 35.0%
ATTTACCGTCAAGATGTTCT+TGG - chr2.4:74679259-74679278 None:intergenic 35.0%
CAAAATGTTGGGACATTAGA+AGG - chr2.4:74680318-74680337 None:intergenic 35.0%
CATTTAGGTAAATCCTTAGG+AGG - chr2.4:74682908-74682927 None:intergenic 35.0%
CCAAATGTAGCAAACAAAAC+TGG + chr2.4:74681261-74681280 MS.gene071950:CDS 35.0%
CTATATCCATGCAAATGAAC+AGG - chr2.4:74682318-74682337 None:intergenic 35.0%
CTATCACTAACTTATGATGG+TGG + chr2.4:74679154-74679173 MS.gene071950:intron 35.0%
CTTCTGATTCATACTGCAAA+TGG + chr2.4:74679086-74679105 MS.gene071950:CDS 35.0%
GAGTGAGTACCTAGTATAAT+TGG - chr2.4:74680893-74680912 None:intergenic 35.0%
GATTACATAATGATCACACC+TGG + chr2.4:74681679-74681698 MS.gene071950:CDS 35.0%
GCATGGATATAGTTTCTATG+TGG + chr2.4:74682326-74682345 MS.gene071950:CDS 35.0%
GCTAGTGCATTTGTATTCTT+TGG + chr2.4:74679506-74679525 MS.gene071950:intron 35.0%
GGATATAGTTTCTATGTGGT+TGG + chr2.4:74682330-74682349 MS.gene071950:CDS 35.0%
GTGTAATTGAATTCCCTTGT+TGG - chr2.4:74682171-74682190 None:intergenic 35.0%
TAACTATTTGTGCTTTCTGC+AGG + chr2.4:74679200-74679219 MS.gene071950:intron 35.0%
TCAACCCTAAATGCATAGAT+GGG + chr2.4:74681113-74681132 MS.gene071950:intron 35.0%
TCAGCCATATAAAAAGGGTA+AGG - chr2.4:74680915-74680934 None:intergenic 35.0%
TGCATAGATGGGAAAAATGT+TGG + chr2.4:74681124-74681143 MS.gene071950:intron 35.0%
! ACAGTTGGAGTACCAAATAA+TGG + chr2.4:74682426-74682445 MS.gene071950:CDS 35.0%
! AGATCATACTCTAGTGCTTT+TGG + chr2.4:74681763-74681782 MS.gene071950:CDS 35.0%
! AGATTTAGGGCTAATAATCC+AGG + chr2.4:74682462-74682481 MS.gene071950:CDS 35.0%
! AGCATTTGAGTTTGAGGATT+AGG - chr2.4:74682881-74682900 None:intergenic 35.0%
! CACTCCTTACCCTTTTTATA+TGG + chr2.4:74680908-74680927 MS.gene071950:intron 35.0%
! GTACATGTTTCTATGTATCG+TGG + chr2.4:74680599-74680618 MS.gene071950:intron 35.0%
! TAGTTTCTATGTGGTTGGTT+GGG + chr2.4:74682335-74682354 MS.gene071950:CDS 35.0%
! TCCTTTAGGAAAGAGTAAGT+CGG + chr2.4:74680014-74680033 MS.gene071950:intron 35.0%
! TGGAGTACCAAATAATGGTT+GGG + chr2.4:74682431-74682450 MS.gene071950:CDS 35.0%
! TTCAAGATGATTGTGGACTA+TGG + chr2.4:74681535-74681554 MS.gene071950:CDS 35.0%
! TTGGAGTACCAAATAATGGT+TGG + chr2.4:74682430-74682449 MS.gene071950:CDS 35.0%
! TTGGATGAGTTTTTGTAGCA+AGG - chr2.4:74681936-74681955 None:intergenic 35.0%
! TTGGGTTGCTATCAGATTTA+GGG + chr2.4:74682449-74682468 MS.gene071950:CDS 35.0%
! TTTGGGTTCAACTTGGATAT+TGG + chr2.4:74679484-74679503 MS.gene071950:intron 35.0%
!! ATGATTTGATAGTGTAGGAG+GGG - chr2.4:74681368-74681387 None:intergenic 35.0%
!! ATGGTGTTTCTAGTGAAAGA+TGG + chr2.4:74682854-74682873 MS.gene071950:CDS 35.0%
!! GATGCTTCTGTTTTGTTGTA+AGG - chr2.4:74681886-74681905 None:intergenic 35.0%
!! TTGACAGTAGTTGGTAAAGA+TGG + chr2.4:74681631-74681650 MS.gene071950:CDS 35.0%
!!! CCAGTTTTGTTTGCTACATT+TGG - chr2.4:74681264-74681283 None:intergenic 35.0%
!!! GTTTTTTTTTGTAGTGGTCG+GGG + chr2.4:74679793-74679812 MS.gene071950:intron 35.0%
AAGTAGCATGTCGCTCTATA+TGG - chr2.4:74682823-74682842 None:intergenic 40.0%
AATCACCCTGTTCATTTGCA+TGG + chr2.4:74682309-74682328 MS.gene071950:CDS 40.0%
ACAGTATATATGCAAGGTGC+GGG - chr2.4:74679826-74679845 None:intergenic 40.0%
ACCGACAAGAGGAATGTTAA+CGG - chr2.4:74681428-74681447 None:intergenic 40.0%
AGAATGTCCATAGATTGACC+AGG - chr2.4:74681700-74681719 None:intergenic 40.0%
AGGAGATACACTTGTAGTCA+AGG + chr2.4:74679314-74679333 MS.gene071950:CDS 40.0%
AGTTCACCATCACAAGTTTG+TGG + chr2.4:74679112-74679131 MS.gene071950:CDS 40.0%
ATAATTGGAACCTCAGCATG+AGG - chr2.4:74680878-74680897 None:intergenic 40.0%
ATATAGAGCGACATGCTACT+TGG + chr2.4:74682822-74682841 MS.gene071950:CDS 40.0%
ATATGGTGGCATGCACATAA+TGG + chr2.4:74680779-74680798 MS.gene071950:CDS 40.0%
CAAATTGACAAACACCGGTA+GGG - chr2.4:74679584-74679603 None:intergenic 40.0%
CACAGTATATATGCAAGGTG+CGG - chr2.4:74679827-74679846 None:intergenic 40.0%
CACATACCACAAACTTGTGA+TGG - chr2.4:74679121-74679140 None:intergenic 40.0%
CAGAAGAAGGAACAATATGG+TGG + chr2.4:74680765-74680784 MS.gene071950:CDS 40.0%
CCAACATTGAAAGCTCATAG+AGG + chr2.4:74679294-74679313 MS.gene071950:CDS 40.0%
CCACAGAAGAAGGAACAATA+TGG + chr2.4:74680762-74680781 MS.gene071950:CDS 40.0%
CCATATTGTTCCTTCTTCTG+TGG - chr2.4:74680765-74680784 None:intergenic 40.0%
CCTCTATGAGCTTTCAATGT+TGG - chr2.4:74679297-74679316 None:intergenic 40.0%
CTATATCCCTGCTCCAAAAA+AGG + chr2.4:74681336-74681355 MS.gene071950:CDS 40.0%
GAGTACATCATTTGGCACAA+AGG + chr2.4:74682218-74682237 MS.gene071950:CDS 40.0%
GCCATGAAATAATGACCAAG+AGG - chr2.4:74681739-74681758 None:intergenic 40.0%
GCTGAGGTTCCAATTATACT+AGG + chr2.4:74680881-74680900 MS.gene071950:CDS 40.0%
GTACATTTGACCACAGAAGA+AGG + chr2.4:74680752-74680771 MS.gene071950:CDS 40.0%
GTCATCATTTATCCCAAACC+TGG + chr2.4:74680830-74680849 MS.gene071950:CDS 40.0%
TATACCATCAATGGTCAACC+TGG + chr2.4:74681309-74681328 MS.gene071950:CDS 40.0%
TGTAGTCAAGGTCTATAACC+AGG + chr2.4:74679326-74679345 MS.gene071950:CDS 40.0%
TTAGGTAAATCCTTAGGAGG+TGG - chr2.4:74682905-74682924 None:intergenic 40.0%
TTCATCATTGTGTAGGAGAG+TGG + chr2.4:74681214-74681233 MS.gene071950:intron 40.0%
TTGGAAGCAAATCAACCTCT+TGG + chr2.4:74681721-74681740 MS.gene071950:CDS 40.0%
TTGTTGTAAGGAGGAAGTTG+AGG - chr2.4:74681874-74681893 None:intergenic 40.0%
! ACAGTGTGTGAAGTATTCCT+CGG - chr2.4:74680483-74680502 None:intergenic 40.0%
! ACTTGTTGGAGACCATCATT+AGG - chr2.4:74679025-74679044 None:intergenic 40.0%
! AGTTTCTATGTGGTTGGTTG+GGG + chr2.4:74682336-74682355 MS.gene071950:CDS 40.0%
! ATAACCAGGTTGACCATTGA+TGG - chr2.4:74681316-74681335 None:intergenic 40.0%
! ATCATTTGGCACAAAGGTGT+TGG + chr2.4:74682224-74682243 MS.gene071950:CDS 40.0%
! CCTTTAGGAAAGAGTAAGTC+GGG + chr2.4:74680015-74680034 MS.gene071950:intron 40.0%
! GTGGTGGAAAGAACAAGTAA+TGG + chr2.4:74681233-74681252 MS.gene071950:CDS 40.0%
! GTTGGGTTGCTATCAGATTT+AGG + chr2.4:74682448-74682467 MS.gene071950:CDS 40.0%
! TATAGAGCGACATGCTACTT+GGG + chr2.4:74682823-74682842 MS.gene071950:CDS 40.0%
!! CGCATTTTGCTTTTGGTCTT+TGG - chr2.4:74682658-74682677 None:intergenic 40.0%
!! GATTAGAAGTGTTTGGTTGC+AGG + chr2.4:74680636-74680655 MS.gene071950:intron 40.0%
!! GCTTCTGTTTTGTTGTAAGG+AGG - chr2.4:74681883-74681902 None:intergenic 40.0%
AAGTGTTTGGTTGCAGGCAT+GGG + chr2.4:74680642-74680661 MS.gene071950:intron 45.0%
ACACAGTGCCCAATTAAACC+AGG + chr2.4:74680710-74680729 MS.gene071950:CDS 45.0%
ACGGTAAATGGGCAATTTCC+TGG + chr2.4:74679270-74679289 MS.gene071950:CDS 45.0%
ACTCAAGATAAACCCTGCAC+CGG + chr2.4:74682021-74682040 MS.gene071950:CDS 45.0%
ACTCCAACTGTGGTTTCCTT+TGG - chr2.4:74682417-74682436 None:intergenic 45.0%
ATCATTGTGTAGGAGAGTGG+TGG + chr2.4:74681217-74681236 MS.gene071950:intron 45.0%
ATGACGTGACATTGTCTTCG+AGG + chr2.4:74681028-74681047 MS.gene071950:intron 45.0%
CAAGACAAGTGAGGAATCCA+TGG + chr2.4:74680666-74680685 MS.gene071950:CDS 45.0%
CAGTATATATGCAAGGTGCG+GGG - chr2.4:74679825-74679844 None:intergenic 45.0%
CCAAATTGACAAACACCGGT+AGG - chr2.4:74679585-74679604 None:intergenic 45.0%
CCCGACTTACTCTTTCCTAA+AGG - chr2.4:74680018-74680037 None:intergenic 45.0%
CCGGTGTTTGTCAATTTGGA+CGG + chr2.4:74679586-74679605 MS.gene071950:intron 45.0%
CCGTCCAAATTGACAAACAC+CGG - chr2.4:74679589-74679608 None:intergenic 45.0%
CCTACCGGTGTTTGTCAATT+TGG + chr2.4:74679582-74679601 MS.gene071950:intron 45.0%
GAGCAGGGATATAGATAACC+AGG - chr2.4:74681330-74681349 None:intergenic 45.0%
GATCACACCTGGTCAATCTA+TGG + chr2.4:74681690-74681709 MS.gene071950:CDS 45.0%
GCCGTTAACATTCCTCTTGT+CGG + chr2.4:74681424-74681443 MS.gene071950:intron 45.0%
GGAGGAAGTTGAGGAAGAAT+AGG - chr2.4:74681865-74681884 None:intergenic 45.0%
GGATAAGTGTGTCCAGGTTT+GGG - chr2.4:74680845-74680864 None:intergenic 45.0%
GTGGCATGCACATAATGGTT+GGG + chr2.4:74680784-74680803 MS.gene071950:CDS 45.0%
GTGTTGAGCTTGTACTGCAA+GGG + chr2.4:74682265-74682284 MS.gene071950:CDS 45.0%
TATTCAGGTCCATCTGACCA+TGG - chr2.4:74680686-74680705 None:intergenic 45.0%
TCAAATGCTTCCACCTCCTA+AGG + chr2.4:74682892-74682911 MS.gene071950:CDS 45.0%
TCAGCATGAGGTCTAGGAAA+GGG - chr2.4:74680866-74680885 None:intergenic 45.0%
TGAGCTTTCAATGTTGGACC+AGG - chr2.4:74679291-74679310 None:intergenic 45.0%
TTAGGAAAGAGTAAGTCGGG+TGG + chr2.4:74680018-74680037 MS.gene071950:intron 45.0%
TTGGAGACCATCATTAGGCT+AGG - chr2.4:74679020-74679039 None:intergenic 45.0%
! AGTGTTGAGCTTGTACTGCA+AGG + chr2.4:74682264-74682283 MS.gene071950:CDS 45.0%
! ATAGAGCGACATGCTACTTG+GGG + chr2.4:74682824-74682843 MS.gene071950:CDS 45.0%
! GGGCACTGTGTTATGTATTC+AGG - chr2.4:74680701-74680720 None:intergenic 45.0%
! TGCTACTTGGGGAATGAGTA+TGG + chr2.4:74682835-74682854 MS.gene071950:CDS 45.0%
!! ATGTGGTTGGTTGGGGTTTT+GGG + chr2.4:74682343-74682362 MS.gene071950:CDS 45.0%
!! GGTGGAAGCATTTGAGTTTG+AGG - chr2.4:74682887-74682906 None:intergenic 45.0%
!! TACTCTAGTGCTTTTGGTGC+TGG + chr2.4:74681769-74681788 MS.gene071950:CDS 45.0%
!! TATGTGGTTGGTTGGGGTTT+TGG + chr2.4:74682342-74682361 MS.gene071950:CDS 45.0%
!!! AGTGCACCTTTTTTGGAGCA+GGG - chr2.4:74681345-74681364 None:intergenic 45.0%
!!! TGGCACAAAGGTGTTGGTTT+TGG + chr2.4:74682230-74682249 MS.gene071950:CDS 45.0%
!!! ATAATATTATAATTTTGATT+TGG - chr2.4:74682743-74682762 None:intergenic 5.0%
!!! TAATTTTAAAGAAATTAATA+GGG - chr2.4:74679559-74679578 None:intergenic 5.0%
AATAGTCATCGGCAAAGCCG+AGG + chr2.4:74680463-74680482 MS.gene071950:intron 50.0%
AGTGTTTGGTTGCAGGCATG+GGG + chr2.4:74680643-74680662 MS.gene071950:intron 50.0%
CCAACTGTGGTTTCCTTTGG+TGG - chr2.4:74682414-74682433 None:intergenic 50.0%
CCACCAAAGGAAACCACAGT+TGG + chr2.4:74682411-74682430 MS.gene071950:CDS 50.0%
CTCAGCATGAGGTCTAGGAA+AGG - chr2.4:74680867-74680886 None:intergenic 50.0%
CTTTCCTAGACCTCATGCTG+AGG + chr2.4:74680865-74680884 MS.gene071950:CDS 50.0%
GGAAAGGGATAAGTGTGTCC+AGG - chr2.4:74680851-74680870 None:intergenic 50.0%
GGGATAAGTGTGTCCAGGTT+TGG - chr2.4:74680846-74680865 None:intergenic 50.0%
GGTGGCATGCACATAATGGT+TGG + chr2.4:74680783-74680802 MS.gene071950:CDS 50.0%
GTGAGGAATCCATGGTCAGA+TGG + chr2.4:74680674-74680693 MS.gene071950:CDS 50.0%
TGGGCAAGAGCTACAGTTCA+TGG + chr2.4:74680803-74680822 MS.gene071950:CDS 50.0%
! AAACCTTTTGCCGAACGGAC+CGG - chr2.4:74682043-74682062 None:intergenic 50.0%
! GAAGTGTTTGGTTGCAGGCA+TGG + chr2.4:74680641-74680660 MS.gene071950:intron 50.0%
! GCTGCAAACCTTTTGCCGAA+CGG - chr2.4:74682048-74682067 None:intergenic 50.0%
!! TGTGGTTGGTTGGGGTTTTG+GGG + chr2.4:74682344-74682363 MS.gene071950:CDS 50.0%
!!! GAGTGCACCTTTTTTGGAGC+AGG - chr2.4:74681346-74681365 None:intergenic 50.0%
GGAACCTCAGCATGAGGTCT+AGG - chr2.4:74680872-74680891 None:intergenic 55.0%
!!! GGAGGGGAGTGCACCTTTTT+TGG - chr2.4:74681352-74681371 None:intergenic 55.0%
GGCATGGGGCAAGACAAGTG+AGG + chr2.4:74680657-74680676 MS.gene071950:intron 60.0%
! AAACCCTGCACCGGTCCGTT+CGG + chr2.4:74682030-74682049 MS.gene071950:CDS 60.0%
TTGCCGAACGGACCGGTGCA+GGG - chr2.4:74682036-74682055 None:intergenic 65.0%
TTTGCCGAACGGACCGGTGC+AGG - chr2.4:74682037-74682056 None:intergenic 65.0%
! GCACCGGTCCGTTCGGCAAA+AGG + chr2.4:74682037-74682056 MS.gene071950:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 74679005 74682931 74679005 ID=MS.gene071950
chr2.4 mRNA 74679005 74682931 74679005 ID=MS.gene071950.t1;Parent=MS.gene071950
chr2.4 exon 74679005 74679133 74679005 ID=MS.gene071950.t1.exon1;Parent=MS.gene071950.t1
chr2.4 CDS 74679005 74679133 74679005 ID=cds.MS.gene071950.t1;Parent=MS.gene071950.t1
chr2.4 exon 74679222 74679373 74679222 ID=MS.gene071950.t1.exon2;Parent=MS.gene071950.t1
chr2.4 CDS 74679222 74679373 74679222 ID=cds.MS.gene071950.t1;Parent=MS.gene071950.t1
chr2.4 exon 74680658 74680902 74680658 ID=MS.gene071950.t1.exon3;Parent=MS.gene071950.t1
chr2.4 CDS 74680658 74680902 74680658 ID=cds.MS.gene071950.t1;Parent=MS.gene071950.t1
chr2.4 exon 74681229 74681357 74681229 ID=MS.gene071950.t1.exon4;Parent=MS.gene071950.t1
chr2.4 CDS 74681229 74681357 74681229 ID=cds.MS.gene071950.t1;Parent=MS.gene071950.t1
chr2.4 exon 74681530 74682483 74681530 ID=MS.gene071950.t1.exon5;Parent=MS.gene071950.t1
chr2.4 CDS 74681530 74682483 74681530 ID=cds.MS.gene071950.t1;Parent=MS.gene071950.t1
chr2.4 exon 74682801 74682931 74682801 ID=MS.gene071950.t1.exon6;Parent=MS.gene071950.t1
chr2.4 CDS 74682801 74682931 74682801 ID=cds.MS.gene071950.t1;Parent=MS.gene071950.t1
Gene Sequence

>MS.gene071950

ATGCCATATGATCCTAGCCTAATGATGGTCTCCAACAAGTTCAAGATGTTAAAATTTTTGGCACTCTCGATACTATATGTTCTTCTGATTCATACTGCAAATGGAAAAGTTCACCATCACAAGTTTGTGGTATGTGCTTCTTAATTTCTCTATCACTAACTTATGATGGTGGTAATGCACAATTGATTTGTAAATTAACTATTTGTGCTTTCTGCAGGTAAAATCTTCATCTTTCACAAGACTATGTAATACCAAGAACATCTTGACGGTAAATGGGCAATTTCCTGGTCCAACATTGAAAGCTCATAGAGGAGATACACTTGTAGTCAAGGTCTATAACCAGGCAAATTATAACATAACAATACATTGGTATGTGGCTTCCCAAACCATATAATTTGTACTTTTTTTTTTACTTTAGTTTAAACATTTATCTTAGTAATTTGACATGTACCAAATTTATTTGTTTTCAAAAATAAAAATTTGGGTTCAACTTGGATATTGGCTAGTGCATTTGTATTCTTTGGGCATAATTTGGGAGAGCTACTTTTACCCCCTATTAATTTCTTTAAAATTACACCCTACCGGTGTTTGTCAATTTGGACGGAAAAGAACGTTATTTTTCTCGCATATGAATGAATAAATGCAAATACAAATATTTGTTTTCATTTGAATGAGAGTAATTTCTCGCATACGAAGAAAATAGAACACTATTTTTCTCACATACAAATGAAAAAATGCAGATAAAATGATTTACAATGATATTCATTGATGTGTGCGATACCGTCTTAGTTTTTTTTTGTAGTGGTCGGGGTTTGAACCCCGCACCTTGCATATATACTGTGTTAGTTAATGAGCATGACAAATTATCAGTTTTTTAAACTCTTAAAAAATATGGCAACACATAATTGTTTAAAAGATATTTTTACAGTATAAAATTAAATTCTAATATAATCTAATCATTTTTTTTACAAAATCAATATTTGTTGTTTCTTGTGCATAAAATATACATTCCTTTAGGAAAGAGTAAGTCGGGTGGTGTGAGAGTGAGAGTAAACTGTAAAAATTTGGTGGAAATGCATTAGATTCATTTGAAGGGATTGACTTTCTTATAGTCATTATCATTATTCTTATGAGCCAGATTTGGAACTTGTTATTTTCACTAATAAATTGGATGAAGACGAGATGAAGATGAGATTGACATTGTATATGTTAAAGTGTAATGTGCATATTAACACTTAGATTTATGATATTGATCGTGGAGTAATTATTTAGGTATCAGTATAACCTAATGTTTAAGACGTGATTTAAGCCCTTCTAATGTCCCAACATTTTGTTAGTCTGAGTTAAATTGGATTCGTACATCTTTAGTAAAGTCTAAGATTTTAATTTTGTAGAAATAAAAAACGTGATTAGGAAGAGAGACTCTACTAAAAGTAACCAATTAAGTTTTTGATAAAAAATAGTCATCGGCAAAGCCGAGGAATACTTCACACACTGTATGTTATGAGTGTTTTTATCTTTAATGTATTTGGTTAAATAAAATATCTTTGTGTTATGAGTGTTTTTTATTATGTAATTTAGTTATATCAATGGTGTACATGTTTCTATGTATCGTGGTCTAGTATATGATTGATTAGAAGTGTTTGGTTGCAGGCATGGGGCAAGACAAGTGAGGAATCCATGGTCAGATGGACCTGAATACATAACACAGTGCCCAATTAAACCAGGAAACATGTTCAAACAAATTGTACATTTGACCACAGAAGAAGGAACAATATGGTGGCATGCACATAATGGTTGGGCAAGAGCTACAGTTCATGGAGCTGTCATCATTTATCCCAAACCTGGACACACTTATCCCTTTCCTAGACCTCATGCTGAGGTTCCAATTATACTAGGTACTCACTCCTTACCCTTTTTATATGGCTGAATACATCTTTAATCCTTTTATTCTGTCTCATTTACGATTTTGGTCCTCAATTTTGACTTTCTACGATAAAATACTTATGTAGCAACTCATTTGATGACGTGACATTGTCTTCGAGGATTCTCACCTAATAACTCATTTTTATGCCATTATAAGTACCTTTATATCACATCATAAAAAATCAACCCTAAATGCATAGATGGGAAAAATGTTGGACATTTTGAAAATTAAGGACCAAAATCTAAAATAAGACAAAATATTGGGATCAATTTAATTGACATTTTCATCATTGTGTAGGAGAGTGGTGGAAAGAACAAGTAATGGAAATTCCAAATGTAGCAAACAAAACTGGAGGAGAACCAATTCTATCAAATGCATATACCATCAATGGTCAACCTGGTTATCTATATCCCTGCTCCAAAAAAGGTGCACTCCCCTCCTACACTATCAAATCATATTTTAACGAATCAAAGAGAGTGTGTTAAAGGATGTGCCGTTAACATTCCTCTTGTCGGTATATATGATTATTAAACTCTACATATGTTATGTATCAAAAAATTCTTCCCTGAACATTAGTTTTTCCTTGTGATGTTTATAGATACTTTCAAGATGATTGTGGACTATGGAAAAACATATCTTCTTAGAATAATCAATGCAGTAATGGATGAAGAACTTTTCTTTGCCATTGAAAATCACAAATTGACAGTAGTTGGTAAAGATGGATTATACTTAAAACCAATAAAAACAGATTACATAATGATCACACCTGGTCAATCTATGGACATTCTATTGGAAGCAAATCAACCTCTTGGTCATTATTTCATGGCTGCAAGATCATACTCTAGTGCTTTTGGTGCTGGTTTTGACAACACTACCACAACAGCTTTACTTATATATAGTCATTCTCACCATCATCATCACAAAAAAAAGCCTATTCTTCCTCAACTTCCTCCTTACAACAAAACAGAAGCATCAACTAGCTTTACAAAGAAATTCAGAAGCCTTGCTACAAAAACTCATCCAATAAATGTTCCTACAAAAGTTGACACACATTTGTTGTTCACAATTTCTGTTAATTTGCTCAACTGTACTCAAGATAAACCCTGCACCGGTCCGTTCGGCAAAAGGTTTGCAGCTAGTGTGAACAACATTAGTCTTGTGCATCCATATATTGATTTTCTTAGTGCCTATTATTATAAAATCCCTGGTGTATTTGAAATGGATTTTCCAAGAATTCCAACAAGGGAATTCAATTACACAGCTGATAAATTACCAGAATATTTTTTGAGTACATCATTTGGCACAAAGGTGTTGGTTTTGGACTATGATGCAAGTGTTGAGCTTGTACTGCAAGGGACTAATGTGTTAGCAAGTGATAATCACCCTGTTCATTTGCATGGATATAGTTTCTATGTGGTTGGTTGGGGTTTTGGGGATTTTGATCCTAAAAAAGATCCCAAAAACTATAATCTTATTGATCCACCAAAGGAAACCACAGTTGGAGTACCAAATAATGGTTGGGTTGCTATCAGATTTAGGGCTAATAATCCAGGTGAACTTTTTCAAACATTTCTTTTATTTTAATAGTAAGTTTTTCAAAATTTATTCATATTGAAATTGATCACAGAATATTTGATTTTAGTCTTTCAACGTAAGGACTAAAATAAGTATTACACGAACGAATTTTAGTATAAATAAATTTTACAAGAGCTAAAATAAAACGCCAAAGACCAAAAGCAAAATGCGATATGTTTGTAAAGACTAAAAATGCATATGATATACTTGCTACGACTAAAAACGTATTTAAACCAAATCAAAATTATAATATTATATTTGATTTGTATATTAATATTTGATTATTATGATCAGGTATGTGGTTGCTGCATTGCCATATAGAGCGACATGCTACTTGGGGAATGAGTATGGTGTTTCTAGTGAAAGATGGTCCTAATCCTCAAACTCAAATGCTTCCACCTCCTAAGGATTTACCTAAATGTTAA
Protein sequence

>MS.gene071950.t1

MPYDPSLMMVSNKFKMLKFLALSILYVLLIHTANGKVHHHKFVVKSSSFTRLCNTKNILTVNGQFPGPTLKAHRGDTLVVKVYNQANYNITIHWHGARQVRNPWSDGPEYITQCPIKPGNMFKQIVHLTTEEGTIWWHAHNGWARATVHGAVIIYPKPGHTYPFPRPHAEVPIILGEWWKEQVMEIPNVANKTGGEPILSNAYTINGQPGYLYPCSKKDTFKMIVDYGKTYLLRIINAVMDEELFFAIENHKLTVVGKDGLYLKPIKTDYIMITPGQSMDILLEANQPLGHYFMAARSYSSAFGAGFDNTTTTALLIYSHSHHHHHKKKPILPQLPPYNKTEASTSFTKKFRSLATKTHPINVPTKVDTHLLFTISVNLLNCTQDKPCTGPFGKRFAASVNNISLVHPYIDFLSAYYYKIPGVFEMDFPRIPTREFNYTADKLPEYFLSTSFGTKVLVLDYDASVELVLQGTNVLASDNHPVHLHGYSFYVVGWGFGDFDPKKDPKNYNLIDPPKETTVGVPNNGWVAIRFRANNPGMWLLHCHIERHATWGMSMVFLVKDGPNPQTQMLPPPKDLPKC