AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01142

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01142.t1 MTR_2g008330 95.509 579 26 0 1 579 1 579 0.0 1135
MS.gene01142.t1 MTR_3g101640 55.203 567 245 6 19 579 8 571 0.0 635
MS.gene01142.t1 MTR_3g101635 54.317 556 240 5 13 562 2 549 0.0 614
MS.gene01142.t1 MTR_5g083360 50.000 568 269 6 19 579 8 567 0.0 595
MS.gene01142.t1 MTR_5g073210 49.020 561 274 6 22 579 9 560 0.0 583
MS.gene01142.t1 MTR_5g020620 49.462 558 272 5 22 579 14 561 0.0 567
MS.gene01142.t1 MTR_5g069680 49.023 563 277 4 17 579 6 558 0.0 564
MS.gene01142.t1 MTR_7g458880 47.304 575 285 7 20 579 9 580 0.0 551
MS.gene01142.t1 MTR_7g062310 48.182 550 274 5 38 579 47 593 0.0 547
MS.gene01142.t1 MTR_7g062250 47.295 573 289 7 14 579 12 578 0.0 545
MS.gene01142.t1 MTR_7g060460 47.079 582 289 8 14 579 3 581 0.0 540
MS.gene01142.t1 MTR_7g058690 46.540 578 294 8 14 579 6 580 0.0 538
MS.gene01142.t1 MTR_3g462760 48.540 548 271 5 32 579 20 556 0.0 537
MS.gene01142.t1 MTR_5g020600 46.771 573 289 7 14 579 3 566 0.0 537
MS.gene01142.t1 MTR_3g071890 50.000 522 247 6 19 535 14 526 0.0 531
MS.gene01142.t1 MTR_4g015120 48.162 544 274 4 36 579 22 557 0.0 528
MS.gene01142.t1 MTR_5g081810 48.983 541 261 7 40 579 3 529 0.0 527
MS.gene01142.t1 MTR_4g064530 44.708 548 295 6 19 562 25 568 3.91e-172 501
MS.gene01142.t1 MTR_7g065980 45.115 563 294 7 27 579 14 571 6.78e-172 499
MS.gene01142.t1 MTR_4g019225 44.102 551 293 6 39 579 27 572 6.21e-169 492
MS.gene01142.t1 MTR_7g065970 42.757 573 306 8 16 579 11 570 1.71e-160 470
MS.gene01142.t1 MTR_4g064530 44.423 529 286 6 19 543 25 549 4.21e-160 469
MS.gene01142.t1 MTR_8g027375 41.065 582 314 9 16 579 1 571 6.74e-156 459
MS.gene01142.t1 MTR_8g091390 32.437 558 314 18 30 557 26 550 1.64e-73 245
MS.gene01142.t1 MTR_5g081790 45.091 275 137 6 264 537 159 420 3.48e-67 224
MS.gene01142.t1 MTR_5g081790 45.509 167 84 1 18 177 4 170 1.58e-41 155
MS.gene01142.t1 MTR_3g078740 32.849 551 300 19 53 557 41 567 7.11e-64 220
MS.gene01142.t1 MTR_3g078700 30.986 568 306 20 19 557 8 518 9.41e-61 210
MS.gene01142.t1 MTR_3g078730 30.298 571 317 17 14 557 1 517 4.68e-60 209
MS.gene01142.t1 MTR_3g115050 28.489 523 332 15 59 579 51 533 4.90e-45 167
MS.gene01142.t1 MTR_1g090707 27.767 533 346 17 52 579 38 536 2.73e-41 158
MS.gene01142.t1 MTR_4g075690 27.186 526 334 14 59 579 51 532 7.79e-41 155
MS.gene01142.t1 MTR_8g479390 27.358 530 322 18 42 559 35 513 5.14e-40 153
MS.gene01142.t1 MTR_1g026410 26.616 526 338 13 59 579 50 532 1.49e-39 152
MS.gene01142.t1 MTR_4g101650 25.739 575 384 16 17 579 6 549 1.30e-38 150
MS.gene01142.t1 MTR_8g479380 27.470 506 318 15 59 559 50 511 1.42e-38 149
MS.gene01142.t1 MTR_3g008580 25.090 554 351 15 13 544 5 516 1.55e-38 150
MS.gene01142.t1 MTR_4g049390 25.475 526 344 14 59 579 48 530 2.88e-37 145
MS.gene01142.t1 MTR_2g088080 25.565 575 377 15 13 579 2 533 1.32e-36 144
MS.gene01142.t1 MTR_4g075690 27.955 440 269 13 59 493 51 447 1.15e-34 136
MS.gene01142.t1 MTR_4g048350 25.475 526 343 16 59 579 48 529 1.90e-34 137
MS.gene01142.t1 MTR_4g132320 27.725 523 336 15 59 579 52 534 4.00e-33 134
MS.gene01142.t1 MTR_8g073840 37.097 186 78 4 32 216 24 171 2.65e-32 126
MS.gene01142.t1 MTR_3g083390 23.741 556 373 16 16 560 1 516 5.21e-31 127
MS.gene01142.t1 MTR_5g018270 25.954 524 314 18 52 559 45 510 9.65e-31 126
MS.gene01142.t1 MTR_3g083400 24.237 557 369 16 16 560 1 516 1.11e-30 126
MS.gene01142.t1 MTR_3g083440 23.741 556 373 16 16 560 1 516 1.15e-30 126
MS.gene01142.t1 MTR_3g083450 23.917 531 355 15 39 560 27 517 1.86e-30 125
MS.gene01142.t1 MTR_3g083430 23.561 556 374 16 16 560 1 516 1.03e-29 123
MS.gene01142.t1 MTR_4g083210 25.227 551 356 18 21 559 5 511 2.00e-29 122
MS.gene01142.t1 MTR_3g083410 24.219 512 337 15 59 560 10 480 5.29e-29 121
MS.gene01142.t1 MTR_7g051440 25.502 498 332 15 56 544 47 514 9.70e-27 115
MS.gene01142.t1 MTR_2g088080 24.646 495 325 13 90 579 1 452 5.59e-26 111
MS.gene01142.t1 MTR_4g083190 24.708 514 336 16 56 559 45 517 4.94e-25 109
MS.gene01142.t1 MTR_7g058670 46.914 81 42 1 95 174 13 93 2.10e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01142.t1 AT5G09360 66.784 566 178 4 15 579 13 569 0.0 807
MS.gene01142.t1 AT5G05390 49.479 576 276 5 8 579 1 565 0.0 595
MS.gene01142.t1 AT2G30210 48.705 579 281 9 8 579 1 570 0.0 578
MS.gene01142.t1 AT2G40370 46.632 579 291 4 15 579 6 580 0.0 575
MS.gene01142.t1 AT5G48100 50.269 557 261 11 18 566 4 552 0.0 561
MS.gene01142.t1 AT5G07130 47.461 571 281 10 19 579 8 569 0.0 553
MS.gene01142.t1 AT2G29130 47.028 572 292 7 16 579 5 573 0.0 544
MS.gene01142.t1 AT5G58910 46.903 565 291 4 16 579 11 567 0.0 541
MS.gene01142.t1 AT5G58910 46.903 565 290 5 16 579 11 566 0.0 539
MS.gene01142.t1 AT2G38080 46.986 564 289 5 16 579 5 558 0.0 539
MS.gene01142.t1 AT5G60020 47.130 575 287 7 19 579 6 577 0.0 538
MS.gene01142.t1 AT1G18140 47.368 551 275 5 42 579 33 581 0.0 535
MS.gene01142.t1 AT5G60020 48.346 544 264 7 50 579 5 545 0.0 527
MS.gene01142.t1 AT5G03260 47.059 561 287 5 19 579 7 557 0.0 526
MS.gene01142.t1 AT5G58910 47.646 531 265 4 50 579 5 523 8.41e-179 515
MS.gene01142.t1 AT5G01190 46.441 562 291 5 20 579 5 558 1.31e-178 516
MS.gene01142.t1 AT5G01190 47.810 525 266 4 55 579 28 544 1.43e-171 498
MS.gene01142.t1 AT2G46570 43.134 568 308 6 17 579 12 569 1.90e-167 488
MS.gene01142.t1 AT5G60020 46.717 533 267 7 19 537 6 535 1.86e-165 482
MS.gene01142.t1 AT3G09220 42.701 548 304 4 20 562 8 550 8.19e-164 479
MS.gene01142.t1 AT5G07130 47.143 490 243 9 100 579 1 484 5.36e-160 466
MS.gene01142.t1 AT5G07130 47.143 490 243 9 100 579 1 484 5.36e-160 466
MS.gene01142.t1 AT5G01050 41.696 566 309 7 24 579 14 568 1.29e-156 461
MS.gene01142.t1 AT5G01040 40.314 573 325 9 15 579 3 566 1.52e-151 448
MS.gene01142.t1 AT2G46570 43.265 490 264 5 95 579 4 484 3.33e-144 426
MS.gene01142.t1 AT3G09220 44.201 457 245 4 111 562 2 453 3.62e-137 407
MS.gene01142.t1 AT5G21105 31.081 592 339 18 1 557 1 558 2.31e-74 248
MS.gene01142.t1 AT4G39830 31.315 578 326 20 16 557 18 560 7.44e-74 246
MS.gene01142.t1 AT5G21100 31.059 557 324 17 31 558 17 542 8.53e-70 236
MS.gene01142.t1 AT5G21105 30.245 572 330 18 1 537 1 538 3.32e-65 223
MS.gene01142.t1 AT4G39830 29.757 494 281 18 99 557 3 465 3.93e-52 186
MS.gene01142.t1 AT4G39830 29.796 490 278 18 103 557 5 463 2.78e-51 184
MS.gene01142.t1 AT4G39830 29.412 493 271 17 99 557 3 452 3.01e-49 178
MS.gene01142.t1 AT5G21105 32.945 343 192 9 225 557 53 367 3.83e-42 156
MS.gene01142.t1 AT1G76160 25.565 575 380 16 8 579 1 530 4.46e-42 159
MS.gene01142.t1 AT5G66920 26.030 534 335 15 56 579 55 538 8.56e-40 153
MS.gene01142.t1 AT1G21850 26.168 535 344 13 20 548 11 500 2.21e-39 152
MS.gene01142.t1 AT1G41830 26.326 528 336 16 59 579 50 531 6.02e-39 150
MS.gene01142.t1 AT1G75790 25.130 577 357 15 16 571 5 527 7.81e-39 150
MS.gene01142.t1 AT4G22010 26.792 530 333 16 59 579 47 530 2.51e-37 145
MS.gene01142.t1 AT5G51480 26.186 527 351 15 56 572 46 544 5.97e-37 145
MS.gene01142.t1 AT1G21860 25.655 534 352 14 18 548 9 500 1.58e-35 140
MS.gene01142.t1 AT4G28090 24.015 533 346 13 59 579 49 534 1.14e-33 135
MS.gene01142.t1 AT4G25240 24.729 554 356 15 40 572 31 544 3.20e-33 134
MS.gene01142.t1 AT4G25240 24.729 554 356 15 40 572 31 544 3.20e-33 134
MS.gene01142.t1 AT4G12420 24.119 539 370 14 16 544 3 512 4.06e-33 134
MS.gene01142.t1 AT4G12420 24.119 539 370 14 16 544 3 512 4.06e-33 134
MS.gene01142.t1 AT5G48450 25.294 510 338 16 48 551 39 511 1.41e-32 132
MS.gene01142.t1 AT5G48450 25.296 506 335 16 52 551 43 511 1.91e-32 132
MS.gene01142.t1 AT4G37160 25.568 528 347 14 56 579 49 534 9.10e-32 129
MS.gene01142.t1 AT4G38420 26.078 487 326 13 59 544 51 504 1.03e-30 126
MS.gene01142.t1 AT2G23630 25.285 526 350 13 56 579 48 532 9.50e-30 124
MS.gene01142.t1 AT2G23630 25.285 526 350 13 56 579 53 537 9.52e-30 124
MS.gene01142.t1 AT3G13390 26.326 509 329 15 39 539 29 499 5.39e-29 121
MS.gene01142.t1 AT4G38420 25.847 472 300 14 59 521 51 481 1.28e-26 114
MS.gene01142.t1 AT1G55570 24.953 529 359 16 15 539 6 500 1.86e-26 114
MS.gene01142.t1 AT1G55560 24.254 536 369 15 15 547 4 505 2.91e-25 110
MS.gene01142.t1 AT4G38420 25.676 444 281 13 59 493 51 454 1.64e-24 107
MS.gene01142.t1 AT4G37160 25.566 442 284 13 56 493 49 449 4.46e-23 102
MS.gene01142.t1 AT3G13400 24.590 488 329 15 56 539 45 497 1.60e-22 102
MS.gene01142.t1 AT3G13400 24.590 488 329 15 56 539 45 497 1.60e-22 102

Find 124 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATGTTTCCTGGTTTAAT+TGG 0.126373 2.1:-74285184 None:intergenic
AAGAACATCTTGACGGTAAA+TGG 0.152634 2.1:+74283737 MS.gene01142:CDS
TATGTGGTTGGTTGGGGTTT+TGG 0.178246 2.1:+74286814 MS.gene01142:CDS
ATTGCAACCCAACCATTATT+TGG 0.185427 2.1:-74286910 None:intergenic
AATTCCCTTGTTGGAATTCT+TGG 0.186318 2.1:-74286631 None:intergenic
GTTGGGTTGCAATCAGATTC+AGG 0.246152 2.1:+74286920 MS.gene01142:CDS
AATCCCTGGTGTATTTGATA+TGG 0.281231 2.1:+74286603 MS.gene01142:CDS
TGGCACAAAGGTGTTGGTTT+TGG 0.288255 2.1:+74286702 MS.gene01142:CDS
ACTCCAACTGTAGTTTCTTC+TGG 0.301445 2.1:-74286886 None:intergenic
GGGCACTGTGTTATGTATTC+AGG 0.301563 2.1:-74285163 None:intergenic
AGCATTTGTGTTTGAGCATT+AGG 0.301879 2.1:-74287306 None:intergenic
TTACTACAAGTCTTAACATT+TGG 0.307789 2.1:-74287349 None:intergenic
AGATCATACTCTAGTGCTTT+TGG 0.308424 2.1:+74286235 MS.gene01142:CDS
TAGTTTCTATGTGGTTGGTT+GGG 0.309756 2.1:+74286807 MS.gene01142:CDS
ACCTCTTGGTCATTATTTCA+TGG 0.311028 2.1:+74286207 MS.gene01142:CDS
TTCAAGATGATTGTGGACTA+TGG 0.317009 2.1:+74286007 MS.gene01142:CDS
CTTCTGATTCATACTGCAAA+TGG 0.327732 2.1:+74283565 MS.gene01142:CDS
ACGGTAAATGGGCAATTTCC+TGG 0.329717 2.1:+74283749 MS.gene01142:CDS
GATCACACCTGGTCAATCTA+TGG 0.338540 2.1:+74286162 MS.gene01142:CDS
ATTTACCGTCAAGATGTTCT+TGG 0.347797 2.1:-74283735 None:intergenic
TACTACAAGTCTTAACATTT+GGG 0.349805 2.1:-74287348 None:intergenic
GAGTGAGTACCTAGTATAAT+TGG 0.350857 2.1:-74285355 None:intergenic
GTATATGCATTTGATAGAAT+TGG 0.350961 2.1:-74285763 None:intergenic
GCACTTAGAAAATCAATATA+TGG 0.356869 2.1:-74286568 None:intergenic
GCATTTGTGTTTGAGCATTA+GGG 0.362250 2.1:-74287305 None:intergenic
TCAATCTATGGACATTCTAA+TGG 0.365197 2.1:+74286174 MS.gene01142:CDS
ATAGTTTCTATGTGGTTGGT+TGG 0.375505 2.1:+74286806 MS.gene01142:CDS
GGGATAAGTGTGTCCAGGTT+TGG 0.377288 2.1:-74285308 None:intergenic
ATTTGTTTGAACATGTTTCC+TGG 0.392779 2.1:-74285193 None:intergenic
GGATAAGTGTGTCCAGGTTT+GGG 0.396428 2.1:-74285307 None:intergenic
CCAAATGTAGCAAACAAAAC+TGG 0.402762 2.1:+74285733 MS.gene01142:CDS
AGTTTCTATGTGGTTGGTTG+GGG 0.402880 2.1:+74286808 MS.gene01142:CDS
TTGACAGTAGTTGGTAAAGA+TGG 0.411673 2.1:+74286103 MS.gene01142:CDS
GCACCGGTCCGTTCGGCAAA+AGG 0.412322 2.1:+74286509 MS.gene01142:CDS
TGCTACTTGGGGAATGAGTA+TGG 0.412639 2.1:+74287263 MS.gene01142:CDS
TTTGCCGAACGGACCGGTGC+AGG 0.415932 2.1:-74286506 None:intergenic
GGAGGAAGTCGAGGAAGAAT+TGG 0.418765 2.1:-74286334 None:intergenic
CCTCTATGAGCTTTCAATGT+TGG 0.425691 2.1:-74283773 None:intergenic
ACATGTTTCCTGGTTTAATT+GGG 0.426379 2.1:-74285183 None:intergenic
ACATAGAACGACATGCTACT+TGG 0.436248 2.1:+74287250 MS.gene01142:CDS
ATCATTAGGCTAGGATCATA+TGG 0.438368 2.1:-74283487 None:intergenic
ACTTGTTGGAGACCATCATT+AGG 0.441748 2.1:-74283501 None:intergenic
ATAACCAGGTTGACCATTGA+TGG 0.442649 2.1:-74285785 None:intergenic
CTATATCCATGCAAATGAAC+AGG 0.445873 2.1:-74286787 None:intergenic
AATCACAAATTGACAGTAGT+TGG 0.450124 2.1:+74286094 MS.gene01142:CDS
TAACATTTGGGTAAATCCAC+AGG 0.451931 2.1:-74287336 None:intergenic
GGAACCTCAGCATGAGGTCT+AGG 0.453899 2.1:-74285334 None:intergenic
GTGTAATTGAATTCCCTTGT+TGG 0.454393 2.1:-74286640 None:intergenic
AAACCCTGCACCGGTCCGTT+CGG 0.454937 2.1:+74286502 MS.gene01142:CDS
TGGGCAAGAGCTACAGTTCA+TGG 0.456344 2.1:+74285268 MS.gene01142:CDS
ACAGTTGGAGTACCAAATAA+TGG 0.463114 2.1:+74286898 MS.gene01142:CDS
CATAGAACGACATGCTACTT+GGG 0.475889 2.1:+74287251 MS.gene01142:CDS
AGAACATCTTGACGGTAAAT+GGG 0.476613 2.1:+74283738 MS.gene01142:CDS
AATCATCCTGTTCATTTGCA+TGG 0.478004 2.1:+74286781 MS.gene01142:CDS
TCAAATGCATATACCATCAA+TGG 0.479246 2.1:+74285772 MS.gene01142:CDS
TTCTGATTCATACTGCAAAT+GGG 0.486110 2.1:+74283566 MS.gene01142:CDS
GGATATAGTTTCTATGTGGT+TGG 0.486226 2.1:+74286802 MS.gene01142:CDS
TTGTTATGTTATAATTTGCC+TGG 0.490301 2.1:-74283823 None:intergenic
TGGAGTACCAAATAATGGTT+GGG 0.492921 2.1:+74286903 MS.gene01142:CDS
CCACAGAAGAAGGAACAATA+TGG 0.493286 2.1:+74285227 MS.gene01142:CDS
GCCTATTACTATAAAATCCC+TGG 0.494025 2.1:+74286589 MS.gene01142:CDS
TTGCCGAACGGACCGGTGCA+GGG 0.495451 2.1:-74286505 None:intergenic
ATGGAAGCAAATCAACCTCT+TGG 0.497551 2.1:+74286193 MS.gene01142:CDS
CCATATTGTTCCTTCTTCTG+TGG 0.503475 2.1:-74285227 None:intergenic
ATCATTTGGCACAAAGGTGT+TGG 0.508419 2.1:+74286696 MS.gene01142:CDS
TTGGAGTACCAAATAATGGT+TGG 0.516173 2.1:+74286902 MS.gene01142:CDS
TTGGGTTGCAATCAGATTCA+GGG 0.517163 2.1:+74286921 MS.gene01142:CDS
GCTGAGGTTCCAATTATACT+AGG 0.523541 2.1:+74285346 MS.gene01142:CDS
GTACATTTGACCACAGAAGA+AGG 0.530014 2.1:+74285217 MS.gene01142:CDS
TTCATCATTGTGTAGGAGAG+TGG 0.531122 2.1:+74285686 MS.gene01142:intron
CCAACTGTAGTTTCTTCTGG+TGG 0.531712 2.1:-74286883 None:intergenic
GATTATTATGATCAGGTATG+TGG 0.532303 2.1:+74287214 MS.gene01142:intron
ATATGGTGGCATGCACATAA+TGG 0.535939 2.1:+74285244 MS.gene01142:CDS
AGATTCAGGGCTAATAATCC+AGG 0.536934 2.1:+74286934 MS.gene01142:CDS
AGATACTTTCAAGATGATTG+TGG 0.540499 2.1:+74286000 MS.gene01142:intron
TAATACCAAGAACATCTTGA+CGG 0.543194 2.1:+74283730 MS.gene01142:CDS
TTGGAGACCATCATTAGGCT+AGG 0.543627 2.1:-74283496 None:intergenic
TCAGCATGAGGTCTAGGAAA+GGG 0.546258 2.1:-74285328 None:intergenic
TAGAATAATCAATGCAGTAA+TGG 0.547126 2.1:+74286045 MS.gene01142:CDS
ATATGATCCTAGCCTAATGA+TGG 0.553978 2.1:+74283489 MS.gene01142:CDS
GTCATCATTTATCCCAAACC+TGG 0.555922 2.1:+74285295 MS.gene01142:CDS
GTGGCATGCACATAATGGTT+GGG 0.556314 2.1:+74285249 MS.gene01142:CDS
GGAAAGGGATAAGTGTGTCC+AGG 0.561390 2.1:-74285313 None:intergenic
GTGAGGAATCCATGGTCAGA+TGG 0.564085 2.1:+74285139 MS.gene01142:CDS
TTGTTGTAAGGAGGAAGTCG+AGG 0.567093 2.1:-74286343 None:intergenic
TGAGCTTTCAATGTTGGACC+AGG 0.567139 2.1:-74283767 None:intergenic
ATATATAAGTAAAGCTGTTG+TGG 0.568070 2.1:-74286278 None:intergenic
CAAGACAAGTGAGGAATCCA+TGG 0.569953 2.1:+74285131 MS.gene01142:CDS
AGTTCACCATCACAAGTTTG+TGG 0.574574 2.1:+74283591 MS.gene01142:CDS
GTGTTGAGCTTGTACTGCAA+GGG 0.574618 2.1:+74286737 MS.gene01142:CDS
TATACCATCAATGGTCAACC+TGG 0.579809 2.1:+74285781 MS.gene01142:CDS
ATGGTGTTTCTAGTGAAAGA+TGG 0.581000 2.1:+74287282 MS.gene01142:CDS
GAGCAGGGATATAGATAACC+AGG 0.581388 2.1:-74285799 None:intergenic
ATCATTGTGTAGGAGAGTGG+TGG 0.583215 2.1:+74285689 MS.gene01142:intron
ATTATAACATAACAATACAT+TGG 0.589097 2.1:+74283831 MS.gene01142:CDS
CACATACCACAAACTTGTGA+TGG 0.592974 2.1:-74283597 None:intergenic
GTGGTGGAAAGAACAAGTAA+TGG 0.600140 2.1:+74285705 MS.gene01142:CDS
AACATTTGGGTAAATCCACA+GGG 0.604694 2.1:-74287335 None:intergenic
AGGAGATACACTTATAGTCA+AGG 0.607058 2.1:+74283793 MS.gene01142:CDS
CTTTCCTAGACCTCATGCTG+AGG 0.607483 2.1:+74285330 MS.gene01142:CDS
CCAACATTGAAAGCTCATAG+AGG 0.607627 2.1:+74283773 MS.gene01142:CDS
CTCAGCATGAGGTCTAGGAA+AGG 0.608161 2.1:-74285329 None:intergenic
AGTGTTTGGTTGCAGGCATG+GGG 0.609053 2.1:+74285108 MS.gene01142:intron
CCACCAGAAGAAACTACAGT+TGG 0.610287 2.1:+74286883 MS.gene01142:CDS
GCATGGATATAGTTTCTATG+TGG 0.621455 2.1:+74286798 MS.gene01142:CDS
GGTGGCATGCACATAATGGT+TGG 0.624194 2.1:+74285248 MS.gene01142:CDS
GAGTACATCATTTGGCACAA+AGG 0.625602 2.1:+74286690 MS.gene01142:CDS
TATAGTCAAGGTCTATAACC+AGG 0.630200 2.1:+74283805 MS.gene01142:CDS
AAATCCATATCAAATACACC+AGG 0.642912 2.1:-74286607 None:intergenic
ATAGAACGACATGCTACTTG+GGG 0.646193 2.1:+74287252 MS.gene01142:CDS
AGTGTTGAGCTTGTACTGCA+AGG 0.646230 2.1:+74286736 MS.gene01142:CDS
GCCATGAAATAATGACCAAG+AGG 0.649971 2.1:-74286208 None:intergenic
ATAATTGGAACCTCAGCATG+AGG 0.653847 2.1:-74285340 None:intergenic
ACTCAAGATAAACCCTGCAC+CGG 0.659837 2.1:+74286493 MS.gene01142:CDS
ACACAGTGCCCAATTAAACC+AGG 0.662581 2.1:+74285175 MS.gene01142:CDS
TATTCAGGTCCATCTGACCA+TGG 0.664643 2.1:-74285148 None:intergenic
GATTACATAATGATCACACC+TGG 0.671979 2.1:+74286151 MS.gene01142:CDS
AATGTAGCAAACAAAACTGG+AGG 0.677923 2.1:+74285736 MS.gene01142:CDS
AGAATGTCCATAGATTGACC+AGG 0.687147 2.1:-74286169 None:intergenic
CAGAAGAAGGAACAATATGG+TGG 0.689108 2.1:+74285230 MS.gene01142:CDS
CATTTGGGTAAATCCACAGG+GGG 0.698591 2.1:-74287333 None:intergenic
AATCCATATCAAATACACCA+GGG 0.715174 2.1:-74286606 None:intergenic
GGCATGGGGCAAGACAAGTG+AGG 0.729322 2.1:+74285122 MS.gene01142:intron
ACATTTGGGTAAATCCACAG+GGG 0.779821 2.1:-74287334 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATGTACAAATTATA+TGG - chr2.1:74283873-74283892 None:intergenic 10.0%
!!! AGTATATCATTTTTATTTTT+AGG - chr2.1:74287104-74287123 None:intergenic 10.0%
!!! GTAATTTTAAAGAAATTAAT+GGG - chr2.1:74284041-74284060 None:intergenic 10.0%
!!! GTTTTCAAAAATAAAAATTT+GGG + chr2.1:74283948-74283967 MS.gene01142:intron 10.0%
!!! TAATTTTAAAGAAATTAATG+GGG - chr2.1:74284040-74284059 None:intergenic 10.0%
!!! TGTAATTTTAAAGAAATTAA+TGG - chr2.1:74284042-74284061 None:intergenic 10.0%
!!! TGTTTTCAAAAATAAAAATT+TGG + chr2.1:74283947-74283966 MS.gene01142:intron 10.0%
!!! TTTTAAACTCTTAAAAAATA+TGG + chr2.1:74284353-74284372 MS.gene01142:intron 10.0%
!! AATATTTGATTATTATGATC+AGG + chr2.1:74287207-74287226 MS.gene01142:intron 15.0%
!! ATGTAATTTAGTTATATCAA+TGG + chr2.1:74285040-74285059 MS.gene01142:intron 15.0%
!! ATTATAACATAACAATACAT+TGG + chr2.1:74283831-74283850 MS.gene01142:CDS 15.0%
!! CTAAAATAAGACAAAATATT+GGG + chr2.1:74285638-74285657 MS.gene01142:intron 15.0%
!! TGGTTTCTTAAAAAAAAAAT+TGG - chr2.1:74287151-74287170 None:intergenic 15.0%
!!! AATTTTAAAGAAATTAATGG+GGG - chr2.1:74284039-74284058 None:intergenic 15.0%
!!! ACAGTGTTATAATTTTAATT+TGG - chr2.1:74287171-74287190 None:intergenic 15.0%
!!! ATCAATAAGATTATAGTTTT+TGG - chr2.1:74286863-74286882 None:intergenic 15.0%
!!! ATTATGTAATCTGTTTTTAT+TGG - chr2.1:74286142-74286161 None:intergenic 15.0%
!!! GTTTTTATCTTTAATGTATT+TGG + chr2.1:74284979-74284998 MS.gene01142:intron 15.0%
!!! TCAATAAGATTATAGTTTTT+GGG - chr2.1:74286862-74286881 None:intergenic 15.0%
!!! TCTAAAATAAGACAAAATAT+TGG + chr2.1:74285637-74285656 MS.gene01142:intron 15.0%
!!! TGTTATTTTCACTAATAAAT+TGG + chr2.1:74284637-74284656 MS.gene01142:intron 15.0%
!!! TTTTGTCTTATTTTAGATTT+TGG - chr2.1:74285634-74285653 None:intergenic 15.0%
!!! TTTTTGAAAACAAATAACTT+TGG - chr2.1:74283939-74283958 None:intergenic 15.0%
!!! TTTTTTATGATGTGATATAA+AGG - chr2.1:74285558-74285577 None:intergenic 15.0%
!! AACACTTAGAGTAATTATTT+AGG + chr2.1:74284719-74284738 MS.gene01142:intron 20.0%
!! AATGTACAAATTATATGGTT+TGG - chr2.1:74283868-74283887 None:intergenic 20.0%
!! CATAAAATATTCATTCCTTT+AGG + chr2.1:74284480-74284499 MS.gene01142:intron 20.0%
!! CTACAAAAAAAAAACTAAGA+CGG - chr2.1:74284269-74284288 None:intergenic 20.0%
!! TAGAAATAAAAAACGTGATT+AGG + chr2.1:74284860-74284879 MS.gene01142:intron 20.0%
!! TGATGTACTCAAAAAATATT+CGG - chr2.1:74286680-74286699 None:intergenic 20.0%
!!! AAAATATGATTTGATAGTGT+AGG - chr2.1:74285845-74285864 None:intergenic 20.0%
!!! ATTTTAAAGAAATTAATGGG+GGG - chr2.1:74284038-74284057 None:intergenic 20.0%
!!! GTTCAAGATGTTAAAATTTT+TGG + chr2.1:74283522-74283541 MS.gene01142:CDS 20.0%
!!! TATTTTTTGAGTACATCATT+TGG + chr2.1:74286682-74286701 MS.gene01142:CDS 20.0%
!!! TCTTAGTTTTTTTTTTGTAG+TGG + chr2.1:74284269-74284288 MS.gene01142:intron 20.0%
!!! TGATATAAAGGTACTTATAA+TGG - chr2.1:74285546-74285565 None:intergenic 20.0%
!!! TGTCAATTTGTGATTTTTAA+TGG - chr2.1:74286089-74286108 None:intergenic 20.0%
!!! TTTTTATCAGAGAACTTAAT+TGG - chr2.1:74284909-74284928 None:intergenic 20.0%
! AAAATAACAAGTTCCAAATC+TGG - chr2.1:74284626-74284645 None:intergenic 25.0%
! AAGTATCTATAAACATCACA+AGG - chr2.1:74285988-74286007 None:intergenic 25.0%
! AATGCATTAGATTCATTTGA+AGG + chr2.1:74284557-74284576 MS.gene01142:intron 25.0%
! ACAAGGAAAAACTAATGTTT+AGG - chr2.1:74285971-74285990 None:intergenic 25.0%
! AGTAAACTGTAAAAATTTGG+TGG + chr2.1:74284533-74284552 MS.gene01142:intron 25.0%
! ATATATAAGTAAAGCTGTTG+TGG - chr2.1:74286281-74286300 None:intergenic 25.0%
! ATGCATTAGATTCATTTGAA+GGG + chr2.1:74284558-74284577 MS.gene01142:intron 25.0%
! ATGTATTCAGCCATATAAAA+AGG - chr2.1:74285386-74285405 None:intergenic 25.0%
! CAAGGAAAAACTAATGTTTA+GGG - chr2.1:74285970-74285989 None:intergenic 25.0%
! CTCTGATAAAAAATAGTCAT+CGG + chr2.1:74284917-74284936 MS.gene01142:intron 25.0%
! GAGAGTAAACTGTAAAAATT+TGG + chr2.1:74284530-74284549 MS.gene01142:intron 25.0%
! GATGTACTCAAAAAATATTC+GGG - chr2.1:74286679-74286698 None:intergenic 25.0%
! GCACTTAGAAAATCAATATA+TGG - chr2.1:74286571-74286590 None:intergenic 25.0%
! GTATATGCATTTGATAGAAT+TGG - chr2.1:74285766-74285785 None:intergenic 25.0%
! TAAATCACGTCTTAAACATT+AGG - chr2.1:74284756-74284775 None:intergenic 25.0%
! TAGAATAATCAATGCAGTAA+TGG + chr2.1:74286045-74286064 MS.gene01142:CDS 25.0%
! TGGCATAAAAATGAGTTATT+AGG - chr2.1:74285526-74285545 None:intergenic 25.0%
! TGTATTCAGCCATATAAAAA+GGG - chr2.1:74285385-74285404 None:intergenic 25.0%
!! ACTTTTGTAGGAACATTTAT+TGG - chr2.1:74286427-74286446 None:intergenic 25.0%
!! ATAAAAATTTGGGTTCAACT+TGG + chr2.1:74283958-74283977 MS.gene01142:intron 25.0%
!! TTGTTATGTTATAATTTGCC+TGG - chr2.1:74283826-74283845 None:intergenic 25.0%
!! TTTGCAAATATATCACCTTT+TGG - chr2.1:74287080-74287099 None:intergenic 25.0%
!! TTTGTTAGTCTGAGTTAAAT+TGG + chr2.1:74284798-74284817 MS.gene01142:intron 25.0%
!! TTTTAACATCTTGAACTTGT+TGG - chr2.1:74283518-74283537 None:intergenic 25.0%
!!! AAATTTTGAAAAAGTTCACC+TGG - chr2.1:74286955-74286974 None:intergenic 25.0%
!!! ACTTAATTGGTTACTTTTAG+TGG - chr2.1:74284896-74284915 None:intergenic 25.0%
!!! AGTTTTTTTTTTGTAGTGGT+CGG + chr2.1:74284273-74284292 MS.gene01142:intron 25.0%
!!! GTTGGACATTTTGAAAATTA+AGG + chr2.1:74285607-74285626 MS.gene01142:intron 25.0%
!!! TAGTTTTTGGGATCTTTTTT+AGG - chr2.1:74286850-74286869 None:intergenic 25.0%
!!! TATGATTGATTAGAAGTGTT+TGG + chr2.1:74285094-74285113 MS.gene01142:intron 25.0%
AAAATGTTGGGACATTAGAA+GGG - chr2.1:74284781-74284800 None:intergenic 30.0%
AAATCCATATCAAATACACC+AGG - chr2.1:74286610-74286629 None:intergenic 30.0%
AACATGTTTCCTGGTTTAAT+TGG - chr2.1:74285187-74285206 None:intergenic 30.0%
AACTCAGACTAACAAAATGT+TGG - chr2.1:74284794-74284813 None:intergenic 30.0%
AATCACAAATTGACAGTAGT+TGG + chr2.1:74286094-74286113 MS.gene01142:CDS 30.0%
AATCCATATCAAATACACCA+GGG - chr2.1:74286609-74286628 None:intergenic 30.0%
ACATGTTTCCTGGTTTAATT+GGG - chr2.1:74285186-74285205 None:intergenic 30.0%
ACTCAGACTAACAAAATGTT+GGG - chr2.1:74284793-74284812 None:intergenic 30.0%
AGATACTTTCAAGATGATTG+TGG + chr2.1:74286000-74286019 MS.gene01142:intron 30.0%
ATAAAACACCAAAGACCAAA+AGG + chr2.1:74287062-74287081 MS.gene01142:intron 30.0%
ATCGTAGAAAGTCAAAATTG+AGG - chr2.1:74285447-74285466 None:intergenic 30.0%
ATTTGTTTGAACATGTTTCC+TGG - chr2.1:74285196-74285215 None:intergenic 30.0%
CATAACAATACATTGGTATG+TGG + chr2.1:74283838-74283857 MS.gene01142:intron 30.0%
CATTACACAGTATATATGCA+AGG - chr2.1:74284313-74284332 None:intergenic 30.0%
CGTAAATGAGACAGAATAAA+AGG - chr2.1:74285416-74285435 None:intergenic 30.0%
CTAGTGCATTTGTATTCTTT+GGG + chr2.1:74283988-74284007 MS.gene01142:intron 30.0%
GATTATTATGATCAGGTATG+TGG + chr2.1:74287214-74287233 MS.gene01142:intron 30.0%
GTACATCTTTAGTAAAGTCT+AGG + chr2.1:74284825-74284844 MS.gene01142:intron 30.0%
GTATTCTTTGGGCATAATTT+GGG + chr2.1:74283999-74284018 MS.gene01142:intron 30.0%
TAATACCAAGAACATCTTGA+CGG + chr2.1:74283730-74283749 MS.gene01142:CDS 30.0%
TAATCATATATACCGACAAG+AGG - chr2.1:74285911-74285930 None:intergenic 30.0%
TCAAATGCATATACCATCAA+TGG + chr2.1:74285772-74285791 MS.gene01142:CDS 30.0%
TCAATCTATGGACATTCTAA+TGG + chr2.1:74286174-74286193 MS.gene01142:CDS 30.0%
TCTCTATCACTAACTTATGA+TGG + chr2.1:74283630-74283649 MS.gene01142:intron 30.0%
TGTATTCTTTGGGCATAATT+TGG + chr2.1:74283998-74284017 MS.gene01142:intron 30.0%
TTATTCTTATGAGCCAGATT+TGG + chr2.1:74284610-74284629 MS.gene01142:intron 30.0%
TTCTGATTCATACTGCAAAT+GGG + chr2.1:74283566-74283585 MS.gene01142:CDS 30.0%
! AAATGTGTGTCAACTTTTGT+AGG - chr2.1:74286439-74286458 None:intergenic 30.0%
! AATCAAAGAGAGTGTGTTAA+AGG + chr2.1:74285869-74285888 MS.gene01142:intron 30.0%
! ACCAGGGATTTTATAGTAAT+AGG - chr2.1:74286593-74286612 None:intergenic 30.0%
! ATTTTCCAAGAATTCCAACA+AGG + chr2.1:74286626-74286645 MS.gene01142:CDS 30.0%
! TGACATTTTCATCATTGTGT+AGG + chr2.1:74285679-74285698 MS.gene01142:intron 30.0%
! TTCTGTCTCATTTACGATTT+TGG + chr2.1:74285420-74285439 MS.gene01142:intron 30.0%
! TTTTCCAAGAATTCCAACAA+GGG + chr2.1:74286627-74286646 MS.gene01142:CDS 30.0%
! TTTTCCCATCTATGCATTTA+GGG - chr2.1:74285585-74285604 None:intergenic 30.0%
! TTTTTCCCATCTATGCATTT+AGG - chr2.1:74285586-74285605 None:intergenic 30.0%
!! ATATATCACCTTTTGGTCTT+TGG - chr2.1:74287073-74287092 None:intergenic 30.0%
!! ATATGATTTGATAGTGTAGG+AGG - chr2.1:74285842-74285861 None:intergenic 30.0%
!! TATGATTTGATAGTGTAGGA+GGG - chr2.1:74285841-74285860 None:intergenic 30.0%
!! TCTTTAAAATTACACCCTAC+CGG + chr2.1:74284048-74284067 MS.gene01142:intron 30.0%
!!! GTTTTTTTTTTGTAGTGGTC+GGG + chr2.1:74284274-74284293 MS.gene01142:intron 30.0%
!!! TTGGCTTTTTTTTGTGATGA+TGG - chr2.1:74286318-74286337 None:intergenic 30.0%
!!! TTTTTTTTTTGTAGTGGTCG+GGG + chr2.1:74284275-74284294 MS.gene01142:intron 30.0%
AAACTATTTGTGCTTTCTGC+AGG + chr2.1:74283679-74283698 MS.gene01142:intron 35.0%
AACATTTGGGTAAATCCACA+GGG - chr2.1:74287338-74287357 None:intergenic 35.0%
AAGAACATCTTGACGGTAAA+TGG + chr2.1:74283737-74283756 MS.gene01142:CDS 35.0%
AATCATCCTGTTCATTTGCA+TGG + chr2.1:74286781-74286800 MS.gene01142:CDS 35.0%
AATCCCTGGTGTATTTGATA+TGG + chr2.1:74286603-74286622 MS.gene01142:CDS 35.0%
AATGTAGCAAACAAAACTGG+AGG + chr2.1:74285736-74285755 MS.gene01142:CDS 35.0%
AATTCCCTTGTTGGAATTCT+TGG - chr2.1:74286634-74286653 None:intergenic 35.0%
ACCTCTTGGTCATTATTTCA+TGG + chr2.1:74286207-74286226 MS.gene01142:CDS 35.0%
AGAACATCTTGACGGTAAAT+GGG + chr2.1:74283738-74283757 MS.gene01142:CDS 35.0%
AGCATTTGTGTTTGAGCATT+AGG - chr2.1:74287309-74287328 None:intergenic 35.0%
AGGAGATACACTTATAGTCA+AGG + chr2.1:74283793-74283812 MS.gene01142:CDS 35.0%
ATAGTTTCTATGTGGTTGGT+TGG + chr2.1:74286806-74286825 MS.gene01142:CDS 35.0%
ATATGATCCTAGCCTAATGA+TGG + chr2.1:74283489-74283508 MS.gene01142:CDS 35.0%
ATCAACCCTAAATGCATAGA+TGG + chr2.1:74285577-74285596 MS.gene01142:intron 35.0%
ATCATTAGGCTAGGATCATA+TGG - chr2.1:74283490-74283509 None:intergenic 35.0%
ATTGCAACCCAACCATTATT+TGG - chr2.1:74286913-74286932 None:intergenic 35.0%
ATTTACCGTCAAGATGTTCT+TGG - chr2.1:74283738-74283757 None:intergenic 35.0%
CAAAATGTTGGGACATTAGA+AGG - chr2.1:74284782-74284801 None:intergenic 35.0%
CCAAATGTAGCAAACAAAAC+TGG + chr2.1:74285733-74285752 MS.gene01142:CDS 35.0%
CTATATCCATGCAAATGAAC+AGG - chr2.1:74286790-74286809 None:intergenic 35.0%
CTATCACTAACTTATGATGG+TGG + chr2.1:74283633-74283652 MS.gene01142:intron 35.0%
CTTCTGATTCATACTGCAAA+TGG + chr2.1:74283565-74283584 MS.gene01142:CDS 35.0%
GAGTGAGTACCTAGTATAAT+TGG - chr2.1:74285358-74285377 None:intergenic 35.0%
GATTACATAATGATCACACC+TGG + chr2.1:74286151-74286170 MS.gene01142:CDS 35.0%
GCATGGATATAGTTTCTATG+TGG + chr2.1:74286798-74286817 MS.gene01142:CDS 35.0%
GCATTTGTGTTTGAGCATTA+GGG - chr2.1:74287308-74287327 None:intergenic 35.0%
GCCTATTACTATAAAATCCC+TGG + chr2.1:74286589-74286608 MS.gene01142:CDS 35.0%
GCTAGTGCATTTGTATTCTT+TGG + chr2.1:74283987-74284006 MS.gene01142:intron 35.0%
GGATATAGTTTCTATGTGGT+TGG + chr2.1:74286802-74286821 MS.gene01142:CDS 35.0%
GTGTAATTGAATTCCCTTGT+TGG - chr2.1:74286643-74286662 None:intergenic 35.0%
TAACATTTGGGTAAATCCAC+AGG - chr2.1:74287339-74287358 None:intergenic 35.0%
TATAGTCAAGGTCTATAACC+AGG + chr2.1:74283805-74283824 MS.gene01142:CDS 35.0%
TCAACCCTAAATGCATAGAT+GGG + chr2.1:74285578-74285597 MS.gene01142:intron 35.0%
TCAGCCATATAAAAAGGGTA+AGG - chr2.1:74285380-74285399 None:intergenic 35.0%
TGCATAGATGGGAAAAATGT+TGG + chr2.1:74285589-74285608 MS.gene01142:intron 35.0%
! ACAGTTGGAGTACCAAATAA+TGG + chr2.1:74286898-74286917 MS.gene01142:CDS 35.0%
! AGATCATACTCTAGTGCTTT+TGG + chr2.1:74286235-74286254 MS.gene01142:CDS 35.0%
! CACTCCTTACCCTTTTTATA+TGG + chr2.1:74285373-74285392 MS.gene01142:intron 35.0%
! GTACATGTTTCTATGTATCG+TGG + chr2.1:74285064-74285083 MS.gene01142:intron 35.0%
! TAGTTTCTATGTGGTTGGTT+GGG + chr2.1:74286807-74286826 MS.gene01142:CDS 35.0%
! TCCTTTAGGAAAGAGTAAGT+CGG + chr2.1:74284494-74284513 MS.gene01142:intron 35.0%
! TGGAGTACCAAATAATGGTT+GGG + chr2.1:74286903-74286922 MS.gene01142:CDS 35.0%
! TTCAAGATGATTGTGGACTA+TGG + chr2.1:74286007-74286026 MS.gene01142:CDS 35.0%
! TTGGAGTACCAAATAATGGT+TGG + chr2.1:74286902-74286921 MS.gene01142:CDS 35.0%
! TTGGATGAGTTTTTGTAGCA+AGG - chr2.1:74286408-74286427 None:intergenic 35.0%
! TTTAAAATTACACCCTACCG+GGG + chr2.1:74284050-74284069 MS.gene01142:intron 35.0%
! TTTGGGTTCAACTTGGATAT+TGG + chr2.1:74283965-74283984 MS.gene01142:intron 35.0%
!! ATGATTTGATAGTGTAGGAG+GGG - chr2.1:74285840-74285859 None:intergenic 35.0%
!! ATGGTGTTTCTAGTGAAAGA+TGG + chr2.1:74287282-74287301 MS.gene01142:CDS 35.0%
!! CTTTAAAATTACACCCTACC+GGG + chr2.1:74284049-74284068 MS.gene01142:intron 35.0%
!! GATGCTTGTGTTTTGTTGTA+AGG - chr2.1:74286358-74286377 None:intergenic 35.0%
!! TTGACAGTAGTTGGTAAAGA+TGG + chr2.1:74286103-74286122 MS.gene01142:CDS 35.0%
!!! CCAGTTTTGTTTGCTACATT+TGG - chr2.1:74285736-74285755 None:intergenic 35.0%
ACAGTATATATGCAAGGTCC+AGG - chr2.1:74284307-74284326 None:intergenic 40.0%
ACATAGAACGACATGCTACT+TGG + chr2.1:74287250-74287269 MS.gene01142:CDS 40.0%
ACATTTGGGTAAATCCACAG+GGG - chr2.1:74287337-74287356 None:intergenic 40.0%
ACCGACAAGAGGAATGTTAA+AGG - chr2.1:74285900-74285919 None:intergenic 40.0%
ACTCCAACTGTAGTTTCTTC+TGG - chr2.1:74286889-74286908 None:intergenic 40.0%
AGAATGTCCATAGATTGACC+AGG - chr2.1:74286172-74286191 None:intergenic 40.0%
AGATTCAGGGCTAATAATCC+AGG + chr2.1:74286934-74286953 MS.gene01142:CDS 40.0%
AGTTCACCATCACAAGTTTG+TGG + chr2.1:74283591-74283610 MS.gene01142:CDS 40.0%
ATAATTGGAACCTCAGCATG+AGG - chr2.1:74285343-74285362 None:intergenic 40.0%
ATATGGTGGCATGCACATAA+TGG + chr2.1:74285244-74285263 MS.gene01142:CDS 40.0%
ATGGAAGCAAATCAACCTCT+TGG + chr2.1:74286193-74286212 MS.gene01142:CDS 40.0%
CACATACCACAAACTTGTGA+TGG - chr2.1:74283600-74283619 None:intergenic 40.0%
CAGAAGAAGGAACAATATGG+TGG + chr2.1:74285230-74285249 MS.gene01142:CDS 40.0%
CAGTATATATGCAAGGTCCA+GGG - chr2.1:74284306-74284325 None:intergenic 40.0%
CCAACATTGAAAGCTCATAG+AGG + chr2.1:74283773-74283792 MS.gene01142:CDS 40.0%
CCACAGAAGAAGGAACAATA+TGG + chr2.1:74285227-74285246 MS.gene01142:CDS 40.0%
CCATATTGTTCCTTCTTCTG+TGG - chr2.1:74285230-74285249 None:intergenic 40.0%
CCTCTATGAGCTTTCAATGT+TGG - chr2.1:74283776-74283795 None:intergenic 40.0%
CTATATCCCTGCTCCAAAAA+AGG + chr2.1:74285808-74285827 MS.gene01142:CDS 40.0%
GAGTACATCATTTGGCACAA+AGG + chr2.1:74286690-74286709 MS.gene01142:CDS 40.0%
GCCATGAAATAATGACCAAG+AGG - chr2.1:74286211-74286230 None:intergenic 40.0%
GCCTTTAACATTCCTCTTGT+CGG + chr2.1:74285896-74285915 MS.gene01142:intron 40.0%
GCTGAGGTTCCAATTATACT+AGG + chr2.1:74285346-74285365 MS.gene01142:CDS 40.0%
GTACATTTGACCACAGAAGA+AGG + chr2.1:74285217-74285236 MS.gene01142:CDS 40.0%
GTCATCATTTATCCCAAACC+TGG + chr2.1:74285295-74285314 MS.gene01142:CDS 40.0%
TATACCATCAATGGTCAACC+TGG + chr2.1:74285781-74285800 MS.gene01142:CDS 40.0%
TTCATCATTGTGTAGGAGAG+TGG + chr2.1:74285686-74285705 MS.gene01142:intron 40.0%
! ACAGTGTGTGAAGTATTCCT+CGG - chr2.1:74284948-74284967 None:intergenic 40.0%
! ACTTGTTGGAGACCATCATT+AGG - chr2.1:74283504-74283523 None:intergenic 40.0%
! AGTTTCTATGTGGTTGGTTG+GGG + chr2.1:74286808-74286827 MS.gene01142:CDS 40.0%
! ATAACCAGGTTGACCATTGA+TGG - chr2.1:74285788-74285807 None:intergenic 40.0%
! ATAGAACGACATGCTACTTG+GGG + chr2.1:74287252-74287271 MS.gene01142:CDS 40.0%
! ATCATTTGGCACAAAGGTGT+TGG + chr2.1:74286696-74286715 MS.gene01142:CDS 40.0%
! CATAGAACGACATGCTACTT+GGG + chr2.1:74287251-74287270 MS.gene01142:CDS 40.0%
! CCTTTAGGAAAGAGTAAGTC+GGG + chr2.1:74284495-74284514 MS.gene01142:intron 40.0%
! GTGGTGGAAAGAACAAGTAA+TGG + chr2.1:74285705-74285724 MS.gene01142:CDS 40.0%
! TTGGGTTGCAATCAGATTCA+GGG + chr2.1:74286921-74286940 MS.gene01142:CDS 40.0%
!! GATTAGAAGTGTTTGGTTGC+AGG + chr2.1:74285101-74285120 MS.gene01142:intron 40.0%
!! GCTTGTGTTTTGTTGTAAGG+AGG - chr2.1:74286355-74286374 None:intergenic 40.0%
AAGTGTTTGGTTGCAGGCAT+GGG + chr2.1:74285107-74285126 MS.gene01142:intron 45.0%
ACACAGTGCCCAATTAAACC+AGG + chr2.1:74285175-74285194 MS.gene01142:CDS 45.0%
ACGGTAAATGGGCAATTTCC+TGG + chr2.1:74283749-74283768 MS.gene01142:CDS 45.0%
ACTCAAGATAAACCCTGCAC+CGG + chr2.1:74286493-74286512 MS.gene01142:CDS 45.0%
ATCATTGTGTAGGAGAGTGG+TGG + chr2.1:74285689-74285708 MS.gene01142:intron 45.0%
ATGACGTGACATTGTCTTCG+AGG + chr2.1:74285493-74285512 MS.gene01142:intron 45.0%
CAAATTGACAAACCCCGGTA+GGG - chr2.1:74284065-74284084 None:intergenic 45.0%
CAAGACAAGTGAGGAATCCA+TGG + chr2.1:74285131-74285150 MS.gene01142:CDS 45.0%
CATTTGGGTAAATCCACAGG+GGG - chr2.1:74287336-74287355 None:intergenic 45.0%
CCAACTGTAGTTTCTTCTGG+TGG - chr2.1:74286886-74286905 None:intergenic 45.0%
CCACCAGAAGAAACTACAGT+TGG + chr2.1:74286883-74286902 MS.gene01142:CDS 45.0%
CCCGACTTACTCTTTCCTAA+AGG - chr2.1:74284498-74284517 None:intergenic 45.0%
GAGCAGGGATATAGATAACC+AGG - chr2.1:74285802-74285821 None:intergenic 45.0%
GATCACACCTGGTCAATCTA+TGG + chr2.1:74286162-74286181 MS.gene01142:CDS 45.0%
GGATAAGTGTGTCCAGGTTT+GGG - chr2.1:74285310-74285329 None:intergenic 45.0%
GTGGCATGCACATAATGGTT+GGG + chr2.1:74285249-74285268 MS.gene01142:CDS 45.0%
GTGTTGAGCTTGTACTGCAA+GGG + chr2.1:74286737-74286756 MS.gene01142:CDS 45.0%
TATTCAGGTCCATCTGACCA+TGG - chr2.1:74285151-74285170 None:intergenic 45.0%
TCAGCATGAGGTCTAGGAAA+GGG - chr2.1:74285331-74285350 None:intergenic 45.0%
TGAGCTTTCAATGTTGGACC+AGG - chr2.1:74283770-74283789 None:intergenic 45.0%
TTAGGAAAGAGTAAGTCGGG+TGG + chr2.1:74284498-74284517 MS.gene01142:intron 45.0%
TTGGAGACCATCATTAGGCT+AGG - chr2.1:74283499-74283518 None:intergenic 45.0%
TTGTTGTAAGGAGGAAGTCG+AGG - chr2.1:74286346-74286365 None:intergenic 45.0%
! AGTGTTGAGCTTGTACTGCA+AGG + chr2.1:74286736-74286755 MS.gene01142:CDS 45.0%
! GGGCACTGTGTTATGTATTC+AGG - chr2.1:74285166-74285185 None:intergenic 45.0%
! GTTGGGTTGCAATCAGATTC+AGG + chr2.1:74286920-74286939 MS.gene01142:CDS 45.0%
! TGCTACTTGGGGAATGAGTA+TGG + chr2.1:74287263-74287282 MS.gene01142:CDS 45.0%
!! ATGTGGTTGGTTGGGGTTTT+GGG + chr2.1:74286815-74286834 MS.gene01142:CDS 45.0%
!! TACTCTAGTGCTTTTGGTGC+TGG + chr2.1:74286241-74286260 MS.gene01142:CDS 45.0%
!! TATGTGGTTGGTTGGGGTTT+TGG + chr2.1:74286814-74286833 MS.gene01142:CDS 45.0%
!!! AGTGGACCTTTTTTGGAGCA+GGG - chr2.1:74285817-74285836 None:intergenic 45.0%
!!! TGGCACAAAGGTGTTGGTTT+TGG + chr2.1:74286702-74286721 MS.gene01142:CDS 45.0%
AATAGTCATCGGCAAAGCCG+AGG + chr2.1:74284928-74284947 MS.gene01142:intron 50.0%
AGTGTTTGGTTGCAGGCATG+GGG + chr2.1:74285108-74285127 MS.gene01142:intron 50.0%
CCAAATTGACAAACCCCGGT+AGG - chr2.1:74284066-74284085 None:intergenic 50.0%
CCGGGGTTTGTCAATTTGGA+CGG + chr2.1:74284067-74284086 MS.gene01142:intron 50.0%
CCGTCCAAATTGACAAACCC+CGG - chr2.1:74284070-74284089 None:intergenic 50.0%
CCTACCGGGGTTTGTCAATT+TGG + chr2.1:74284063-74284082 MS.gene01142:intron 50.0%
CTCAGCATGAGGTCTAGGAA+AGG - chr2.1:74285332-74285351 None:intergenic 50.0%
CTTTCCTAGACCTCATGCTG+AGG + chr2.1:74285330-74285349 MS.gene01142:CDS 50.0%
GGAAAGGGATAAGTGTGTCC+AGG - chr2.1:74285316-74285335 None:intergenic 50.0%
GGAGGAAGTCGAGGAAGAAT+TGG - chr2.1:74286337-74286356 None:intergenic 50.0%
GGGATAAGTGTGTCCAGGTT+TGG - chr2.1:74285311-74285330 None:intergenic 50.0%
GGTGGCATGCACATAATGGT+TGG + chr2.1:74285248-74285267 MS.gene01142:CDS 50.0%
GTGAGGAATCCATGGTCAGA+TGG + chr2.1:74285139-74285158 MS.gene01142:CDS 50.0%
TGGGCAAGAGCTACAGTTCA+TGG + chr2.1:74285268-74285287 MS.gene01142:CDS 50.0%
! AAACCTTTTGCCGAACGGAC+CGG - chr2.1:74286515-74286534 None:intergenic 50.0%
! GAAGTGTTTGGTTGCAGGCA+TGG + chr2.1:74285106-74285125 MS.gene01142:intron 50.0%
! GCTGCAAACCTTTTGCCGAA+CGG - chr2.1:74286520-74286539 None:intergenic 50.0%
!! TTGATAGTGTAGGAGGGGAG+TGG - chr2.1:74285835-74285854 None:intergenic 50.0%
!!! GAGTGGACCTTTTTTGGAGC+AGG - chr2.1:74285818-74285837 None:intergenic 50.0%
GGAACCTCAGCATGAGGTCT+AGG - chr2.1:74285337-74285356 None:intergenic 55.0%
TTGGGTAAATCCACAGGGGG+CGG - chr2.1:74287333-74287352 None:intergenic 55.0%
!!! GGAGGGGAGTGGACCTTTTT+TGG - chr2.1:74285824-74285843 None:intergenic 55.0%
ACAAATGCTTCCGCCCCCTG+TGG + chr2.1:74287320-74287339 MS.gene01142:CDS 60.0%
GGCATGGGGCAAGACAAGTG+AGG + chr2.1:74285122-74285141 MS.gene01142:intron 60.0%
TAGTGGTCGGGGTTGAACCC+TGG + chr2.1:74284286-74284305 MS.gene01142:intron 60.0%
! AAACCCTGCACCGGTCCGTT+CGG + chr2.1:74286502-74286521 MS.gene01142:CDS 60.0%
TTGCCGAACGGACCGGTGCA+GGG - chr2.1:74286508-74286527 None:intergenic 65.0%
TTTGCCGAACGGACCGGTGC+AGG - chr2.1:74286509-74286528 None:intergenic 65.0%
! GCACCGGTCCGTTCGGCAAA+AGG + chr2.1:74286509-74286528 MS.gene01142:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 74283484 74287359 74283484 ID=MS.gene01142
chr2.1 mRNA 74283484 74287359 74283484 ID=MS.gene01142.t1;Parent=MS.gene01142
chr2.1 exon 74283484 74283612 74283484 ID=MS.gene01142.t1.exon1;Parent=MS.gene01142.t1
chr2.1 CDS 74283484 74283612 74283484 ID=cds.MS.gene01142.t1;Parent=MS.gene01142.t1
chr2.1 exon 74283701 74283852 74283701 ID=MS.gene01142.t1.exon2;Parent=MS.gene01142.t1
chr2.1 CDS 74283701 74283852 74283701 ID=cds.MS.gene01142.t1;Parent=MS.gene01142.t1
chr2.1 exon 74285123 74285367 74285123 ID=MS.gene01142.t1.exon3;Parent=MS.gene01142.t1
chr2.1 CDS 74285123 74285367 74285123 ID=cds.MS.gene01142.t1;Parent=MS.gene01142.t1
chr2.1 exon 74285701 74285829 74285701 ID=MS.gene01142.t1.exon4;Parent=MS.gene01142.t1
chr2.1 CDS 74285701 74285829 74285701 ID=cds.MS.gene01142.t1;Parent=MS.gene01142.t1
chr2.1 exon 74286002 74286955 74286002 ID=MS.gene01142.t1.exon5;Parent=MS.gene01142.t1
chr2.1 CDS 74286002 74286955 74286002 ID=cds.MS.gene01142.t1;Parent=MS.gene01142.t1
chr2.1 exon 74287229 74287359 74287229 ID=MS.gene01142.t1.exon6;Parent=MS.gene01142.t1
chr2.1 CDS 74287229 74287359 74287229 ID=cds.MS.gene01142.t1;Parent=MS.gene01142.t1
Gene Sequence

>MS.gene01142

ATGCCATATGATCCTAGCCTAATGATGGTCTCCAACAAGTTCAAGATGTTAAAATTTTTGGCACTCTCTATACTATATGTTCTTCTGATTCATACTGCAAATGGGAAAGTTCACCATCACAAGTTTGTGGTATGTGCTTCTTAATTTCTCTATCACTAACTTATGATGGTGGTAATGCACAATTGATTTGTAAATAAACTATTTGTGCTTTCTGCAGGTAAAATCTTCATCTTTCACAAGACTATGTAATACCAAGAACATCTTGACGGTAAATGGGCAATTTCCTGGTCCAACATTGAAAGCTCATAGAGGAGATACACTTATAGTCAAGGTCTATAACCAGGCAAATTATAACATAACAATACATTGGTATGTGGCTTACCAAACCATATAATTTGTACATTTTTTTTTATTACTTTAGTTTAAACATTTGTCTAGTAATTTGACATGTACCAAAGTTATTTGTTTTCAAAAATAAAAATTTGGGTTCAACTTGGATATTGGCTAGTGCATTTGTATTCTTTGGGCATAATTTGGGAGAGCTACTTTTACCCCCCATTAATTTCTTTAAAATTACACCCTACCGGGGTTTGTCAATTTGGACGGAAAAGAACGTTATTTTTCTCGCACATGAATGAATAAATGCAAATACAAATATTTGTTTTCATTTGAATGAGAGTAATTTCTCGCATACGAAGAAAATAGAACACTATTTTTCTCACATACAAATGAAAAAATGCAGTTAAAATGATTTACAGTAATATTCATTGATGTGTGCGATACCGTCTTAGTTTTTTTTTTGTAGTGGTCGGGGTTGAACCCTGGACCTTGCATATATACTGTGTAATGAGCATGACAGATTATCAGTTTTTTAAACTCTTAAAAAATATGGCAACACATAATTGTTTAAAAGATATTTTTACAGTATAAAATTAAATTCTAATATAATCTAATCATTTTTTTTATTTACAAAATCAATATTTGCTGTTTCTTGTGCATAAAATATTCATTCCTTTAGGAAAGAGTAAGTCGGGTGGTGTGAGAGTGAGAGTAAACTGTAAAAATTTGGTGGAAATGCATTAGATTCATTTGAAGGGATTGACTTTCTTTCTTATAGTCATTATCATTATTCTTATGAGCCAGATTTGGAACTTGTTATTTTCACTAATAAATTGGATGAAGACGAGATGAAGATGAGATTGACATTGTACATGTTAAAGTGTAATATGCATATTAACACTTAGAGTAATTATTTAGGTATCAGTATAACCTAATGTTTAAGACGTGATTTAATCCCTTCTAATGTCCCAACATTTTGTTAGTCTGAGTTAAATTGGATTCGTACATCTTTAGTAAAGTCTAGGATTTTAATTTTGTAGAAATAAAAAACGTGATTAGGAAGAGAGACTCCACTAAAAGTAACCAATTAAGTTCTCTGATAAAAAATAGTCATCGGCAAAGCCGAGGAATACTTCACACACTGTATGTTATGAGTGTTTTTATCTTTAATGTATTTGGTTAAATAAAATATCTTTGTGTTATGAGTGTTTTTTATTATGTAATTTAGTTATATCAATGGTGTACATGTTTCTATGTATCGTGGTCTAGTCTATGATTGATTAGAAGTGTTTGGTTGCAGGCATGGGGCAAGACAAGTGAGGAATCCATGGTCAGATGGACCTGAATACATAACACAGTGCCCAATTAAACCAGGAAACATGTTCAAACAAATTGTACATTTGACCACAGAAGAAGGAACAATATGGTGGCATGCACATAATGGTTGGGCAAGAGCTACAGTTCATGGAGCTGTCATCATTTATCCCAAACCTGGACACACTTATCCCTTTCCTAGACCTCATGCTGAGGTTCCAATTATACTAGGTACTCACTCCTTACCCTTTTTATATGGCTGAATACATCTTTAATCCTTTTATTCTGTCTCATTTACGATTTTGGTCCTCAATTTTGACTTTCTACGATAAAATACTTATGTAGCAACTCATTTGATGACGTGACATTGTCTTCGAGGATTCTCACCTAATAACTCATTTTTATGCCATTATAAGTACCTTTATATCACATCATAAAAAATCAACCCTAAATGCATAGATGGGAAAAATGTTGGACATTTTGAAAATTAAGGACCAAAATCTAAAATAAGACAAAATATTGGGATCAAAATTGTATTTAATTGACATTTTCATCATTGTGTAGGAGAGTGGTGGAAAGAACAAGTAATGGAAATTCCAAATGTAGCAAACAAAACTGGAGGAGAACCAATTCTATCAAATGCATATACCATCAATGGTCAACCTGGTTATCTATATCCCTGCTCCAAAAAAGGTCCACTCCCCTCCTACACTATCAAATCATATTTTAACGAATCAAAGAGAGTGTGTTAAAGGATGTGCCTTTAACATTCCTCTTGTCGGTATATATGATTATTAAACTCTACATATGTTATGTATCAAAAAATTCTTCCCTAAACATTAGTTTTTCCTTGTGATGTTTATAGATACTTTCAAGATGATTGTGGACTATGGAAAAACATATCTTCTTAGAATAATCAATGCAGTAATGGATGAAGAACTTTTCTTTGCCATTAAAAATCACAAATTGACAGTAGTTGGTAAAGATGGATTATACTTAAAACCAATAAAAACAGATTACATAATGATCACACCTGGTCAATCTATGGACATTCTAATGGAAGCAAATCAACCTCTTGGTCATTATTTCATGGCTGCAAGATCATACTCTAGTGCTTTTGGTGCTGGTTTTGACAACACAACCACAACAGCTTTACTTATATATAGTCATTCTCATCACCATCATCACAAAAAAAAGCCAATTCTTCCTCGACTTCCTCCTTACAACAAAACACAAGCATCAACTAGCTTTACAAAGAAATTCAGAAGCCTTGCTACAAAAACTCATCCAATAAATGTTCCTACAAAAGTTGACACACATTTGTTGTTCACAATTTCTGTTAATTTGCTCAACTGTACTCAAGATAAACCCTGCACCGGTCCGTTCGGCAAAAGGTTTGCAGCTAGTGTGAACAACATTAGTCTTGTGCATCCATATATTGATTTTCTAAGTGCCTATTACTATAAAATCCCTGGTGTATTTGATATGGATTTTCCAAGAATTCCAACAAGGGAATTCAATTACACAGCTGATAAATTACCCGAATATTTTTTGAGTACATCATTTGGCACAAAGGTGTTGGTTTTGGACTATGATGCAAGTGTTGAGCTTGTACTGCAAGGGACTAATGTGTTAGCAAGTGATAATCATCCTGTTCATTTGCATGGATATAGTTTCTATGTGGTTGGTTGGGGTTTTGGGAATTTTGATCCTAAAAAAGATCCCAAAAACTATAATCTTATTGATCCACCAGAAGAAACTACAGTTGGAGTACCAAATAATGGTTGGGTTGCAATCAGATTCAGGGCTAATAATCCAGGTGAACTTTTTCAAAATTTATTCATATTGAAATTGATCGTAGAATATATGATTTTAGTCTCTCAACGTAAGTAATTTTAGTATAAGTAAATTTTACAAGAGCTAAAATAAAACACCAAAGACCAAAAGGTGATATATTTGCAAAGCCTAAAAATAAAAATGATATACTTGCTATGACTAAAAACAATTTAAACCAATTTTTTTTTTAAGAAACCAAATTAAAATTATAACACTGTATTTGATTTGTATCTTAATATTTGATTATTATGATCAGGTATGTGGTTGCTGCATTGTCACATAGAACGACATGCTACTTGGGGAATGAGTATGGTGTTTCTAGTGAAAGATGGCCCTAATGCTCAAACACAAATGCTTCCGCCCCCTGTGGATTTACCCAAATGTTAA
Protein sequence

>MS.gene01142.t1

MPYDPSLMMVSNKFKMLKFLALSILYVLLIHTANGKVHHHKFVVKSSSFTRLCNTKNILTVNGQFPGPTLKAHRGDTLIVKVYNQANYNITIHWHGARQVRNPWSDGPEYITQCPIKPGNMFKQIVHLTTEEGTIWWHAHNGWARATVHGAVIIYPKPGHTYPFPRPHAEVPIILGEWWKEQVMEIPNVANKTGGEPILSNAYTINGQPGYLYPCSKKDTFKMIVDYGKTYLLRIINAVMDEELFFAIKNHKLTVVGKDGLYLKPIKTDYIMITPGQSMDILMEANQPLGHYFMAARSYSSAFGAGFDNTTTTALLIYSHSHHHHHKKKPILPRLPPYNKTQASTSFTKKFRSLATKTHPINVPTKVDTHLLFTISVNLLNCTQDKPCTGPFGKRFAASVNNISLVHPYIDFLSAYYYKIPGVFDMDFPRIPTREFNYTADKLPEYFLSTSFGTKVLVLDYDASVELVLQGTNVLASDNHPVHLHGYSFYVVGWGFGNFDPKKDPKNYNLIDPPEETTVGVPNNGWVAIRFRANNPGMWLLHCHIERHATWGMSMVFLVKDGPNAQTQMLPPPVDLPKC