Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76249.t1 | XP_013470249.1 | 87.8 | 245 | 4 | 2 | 1 | 220 | 1 | 244 | 3.30E-101 | 377.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76249.t1 | Q8S9H7 | 39.5 | 195 | 79 | 4 | 23 | 182 | 24 | 214 | 5.4e-28 | 125.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76249.t1 | G7ZYT0 | 87.8 | 245 | 4 | 2 | 1 | 220 | 1 | 244 | 2.4e-101 | 377.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76249.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055150 | MS.gene76249 | 0.810173 | 1.31E-50 | -1.69E-46 |
| MS.gene057148 | MS.gene76249 | -0.828715 | 7.71E-55 | -1.69E-46 |
| MS.gene05985 | MS.gene76249 | -0.808808 | 2.58E-50 | -1.69E-46 |
| MS.gene059901 | MS.gene76249 | -0.812582 | 3.94E-51 | -1.69E-46 |
| MS.gene060522 | MS.gene76249 | 0.808579 | 2.89E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76249.t1 | MTR_1g111830 | 87.755 | 245 | 4 | 2 | 1 | 220 | 1 | 244 | 1.01e-155 | 431 |
| MS.gene76249.t1 | MTR_3g462790 | 37.751 | 249 | 100 | 10 | 23 | 220 | 41 | 285 | 2.59e-37 | 132 |
| MS.gene76249.t1 | MTR_8g063600 | 42.162 | 185 | 66 | 4 | 23 | 175 | 8 | 183 | 5.77e-36 | 128 |
| MS.gene76249.t1 | MTR_7g067080 | 39.683 | 189 | 72 | 5 | 23 | 175 | 33 | 215 | 1.61e-34 | 125 |
| MS.gene76249.t1 | MTR_5g081860 | 40.678 | 177 | 66 | 5 | 23 | 167 | 25 | 194 | 4.26e-34 | 123 |
| MS.gene76249.t1 | MTR_5g069710 | 40.113 | 177 | 72 | 3 | 23 | 168 | 27 | 200 | 4.45e-34 | 124 |
| MS.gene76249.t1 | MTR_4g111975 | 36.500 | 200 | 72 | 4 | 25 | 169 | 8 | 207 | 3.27e-31 | 116 |
| MS.gene76249.t1 | MTR_8g063870 | 37.222 | 180 | 70 | 3 | 23 | 175 | 6 | 169 | 3.96e-27 | 105 |
| MS.gene76249.t1 | MTR_1g033600 | 43.802 | 121 | 58 | 2 | 23 | 133 | 10 | 130 | 4.87e-24 | 93.2 |
| MS.gene76249.t1 | MTR_5g075760 | 33.862 | 189 | 86 | 8 | 24 | 184 | 12 | 189 | 2.47e-20 | 85.9 |
| MS.gene76249.t1 | MTR_5g075790 | 34.375 | 192 | 80 | 8 | 24 | 184 | 21 | 197 | 8.34e-20 | 84.3 |
| MS.gene76249.t1 | MTR_1g022290 | 42.254 | 71 | 41 | 0 | 25 | 95 | 7 | 77 | 3.50e-16 | 71.6 |
| MS.gene76249.t1 | MTR_8g051670 | 85.417 | 48 | 7 | 0 | 1 | 48 | 1 | 48 | 4.20e-16 | 70.1 |
| MS.gene76249.t1 | MTR_4g100630 | 40.000 | 125 | 34 | 3 | 94 | 177 | 49 | 173 | 7.36e-16 | 75.5 |
| MS.gene76249.t1 | MTR_3g116720 | 47.619 | 63 | 33 | 0 | 25 | 87 | 16 | 78 | 8.99e-16 | 70.1 |
| MS.gene76249.t1 | MTR_3g111880 | 41.667 | 72 | 42 | 0 | 23 | 94 | 5 | 76 | 2.36e-15 | 69.3 |
| MS.gene76249.t1 | MTR_5g020170 | 44.928 | 69 | 38 | 0 | 19 | 87 | 13 | 81 | 7.85e-15 | 68.2 |
| MS.gene76249.t1 | MTR_6g004250 | 43.284 | 67 | 38 | 0 | 23 | 89 | 8 | 74 | 4.82e-14 | 65.5 |
| MS.gene76249.t1 | MTR_7g089210 | 47.619 | 63 | 33 | 0 | 30 | 92 | 17 | 79 | 2.70e-13 | 63.5 |
| MS.gene76249.t1 | MTR_2g100930 | 42.222 | 90 | 26 | 2 | 120 | 183 | 104 | 193 | 5.63e-13 | 67.4 |
| MS.gene76249.t1 | MTR_1g033620 | 69.767 | 43 | 13 | 0 | 133 | 175 | 38 | 80 | 5.87e-13 | 66.2 |
| MS.gene76249.t1 | MTR_3g013440 | 40.909 | 66 | 38 | 1 | 25 | 89 | 10 | 75 | 3.26e-12 | 60.8 |
| MS.gene76249.t1 | MTR_8g101650 | 43.182 | 88 | 24 | 2 | 103 | 165 | 83 | 169 | 1.51e-11 | 62.8 |
| MS.gene76249.t1 | MTR_6g092540 | 45.070 | 71 | 14 | 1 | 120 | 165 | 92 | 162 | 1.65e-11 | 62.8 |
| MS.gene76249.t1 | MTR_3g111920 | 36.264 | 91 | 48 | 4 | 25 | 114 | 3 | 84 | 2.44e-11 | 58.5 |
| MS.gene76249.t1 | MTR_8g077360 | 40.000 | 65 | 38 | 1 | 23 | 87 | 3 | 66 | 3.65e-11 | 57.4 |
| MS.gene76249.t1 | MTR_8g077380 | 40.000 | 65 | 38 | 1 | 23 | 87 | 3 | 66 | 4.25e-11 | 57.4 |
| MS.gene76249.t1 | MTR_8g077390 | 40.000 | 65 | 38 | 1 | 23 | 87 | 3 | 66 | 4.25e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76249.t1 | AT5G04760 | 48.879 | 223 | 78 | 5 | 23 | 220 | 4 | 215 | 2.51e-57 | 181 |
| MS.gene76249.t1 | AT5G08520 | 43.316 | 187 | 65 | 4 | 25 | 175 | 12 | 193 | 1.47e-37 | 132 |
| MS.gene76249.t1 | AT3G11280 | 41.317 | 167 | 67 | 3 | 25 | 166 | 33 | 193 | 4.59e-35 | 125 |
| MS.gene76249.t1 | AT3G11280 | 41.317 | 167 | 67 | 3 | 25 | 166 | 33 | 193 | 4.59e-35 | 125 |
| MS.gene76249.t1 | AT2G38090 | 33.462 | 260 | 122 | 7 | 6 | 218 | 7 | 262 | 1.01e-34 | 125 |
| MS.gene76249.t1 | AT5G05790 | 37.222 | 180 | 82 | 3 | 21 | 172 | 27 | 203 | 3.64e-34 | 123 |
| MS.gene76249.t1 | AT5G05790 | 37.222 | 180 | 82 | 3 | 21 | 172 | 27 | 203 | 3.64e-34 | 123 |
| MS.gene76249.t1 | AT5G58900 | 37.778 | 180 | 72 | 3 | 25 | 168 | 34 | 209 | 5.76e-32 | 118 |
| MS.gene76249.t1 | AT1G49010 | 35.965 | 228 | 83 | 8 | 25 | 201 | 8 | 223 | 3.15e-30 | 114 |
| MS.gene76249.t1 | AT5G01200 | 33.803 | 213 | 92 | 6 | 1 | 168 | 6 | 214 | 4.39e-28 | 107 |
| MS.gene76249.t1 | AT3G10585 | 43.448 | 145 | 65 | 4 | 25 | 165 | 7 | 138 | 5.98e-26 | 99.0 |
| MS.gene76249.t1 | AT5G23650 | 31.839 | 223 | 105 | 4 | 23 | 204 | 11 | 227 | 1.38e-25 | 102 |
| MS.gene76249.t1 | AT3G10580 | 38.764 | 178 | 67 | 6 | 25 | 176 | 8 | 169 | 6.89e-24 | 95.9 |
| MS.gene76249.t1 | AT3G10580 | 38.764 | 178 | 67 | 6 | 25 | 176 | 8 | 169 | 6.98e-24 | 96.7 |
| MS.gene76249.t1 | AT4G09450 | 38.922 | 167 | 61 | 4 | 24 | 165 | 6 | 156 | 6.09e-23 | 92.4 |
| MS.gene76249.t1 | AT1G75250 | 42.667 | 75 | 41 | 1 | 13 | 87 | 2 | 74 | 8.73e-17 | 73.2 |
| MS.gene76249.t1 | AT1G75250 | 42.667 | 75 | 41 | 1 | 13 | 87 | 2 | 74 | 1.35e-16 | 73.6 |
| MS.gene76249.t1 | AT4G39250 | 39.474 | 76 | 46 | 0 | 25 | 100 | 14 | 89 | 1.31e-15 | 70.1 |
| MS.gene76249.t1 | AT2G18328 | 50.000 | 60 | 30 | 0 | 30 | 89 | 16 | 75 | 2.51e-13 | 63.5 |
| MS.gene76249.t1 | AT5G47390 | 44.578 | 83 | 19 | 2 | 120 | 177 | 91 | 171 | 1.35e-12 | 66.2 |
| MS.gene76249.t1 | AT2G21650 | 41.096 | 73 | 43 | 0 | 25 | 97 | 14 | 86 | 2.76e-12 | 61.2 |
| MS.gene76249.t1 | AT1G19510 | 44.068 | 59 | 33 | 0 | 29 | 87 | 16 | 74 | 4.43e-12 | 60.8 |
| MS.gene76249.t1 | AT3G10590 | 31.771 | 192 | 93 | 8 | 24 | 183 | 6 | 191 | 9.68e-12 | 62.4 |
| MS.gene76249.t1 | AT5G61620 | 36.975 | 119 | 48 | 2 | 77 | 168 | 58 | 176 | 1.26e-11 | 63.2 |
| MS.gene76249.t1 | AT4G36570 | 59.091 | 44 | 18 | 0 | 25 | 68 | 12 | 55 | 2.37e-11 | 57.8 |
Find 76 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGTCTGCGACGGAAATT+AGG | 0.198649 | 1.1:+78945963 | MS.gene76249:CDS |
| TCTCTTTCTTCACCGAATTC+TGG | 0.216560 | 1.1:-78947131 | None:intergenic |
| GCATATGGGTATTCAAATTA+TGG | 0.241889 | 1.1:+78947315 | MS.gene76249:CDS |
| CTGTGCCTATTGATCAGAAC+TGG | 0.289180 | 1.1:+78947205 | MS.gene76249:CDS |
| CCGCGTCGTGGCGGCGGTGG+TGG | 0.329644 | 1.1:-78945822 | None:intergenic |
| TGATATACTGGAAATTGATT+CGG | 0.359965 | 1.1:+78946009 | MS.gene76249:CDS |
| TGGTGGTGGATTGGCTGAAT+GGG | 0.366393 | 1.1:+78946075 | MS.gene76249:CDS |
| AGCTTTGGTTCATGATATAC+TGG | 0.372414 | 1.1:+78945997 | MS.gene76249:CDS |
| CAGGATCAAATGAGTGCATA+TGG | 0.389179 | 1.1:+78947300 | MS.gene76249:CDS |
| GATGGTGCCGGAGGATTTAC+CGG | 0.392546 | 1.1:+78945907 | MS.gene76249:CDS |
| TAGGGATCACTATGAAGCTT+TGG | 0.393734 | 1.1:+78945982 | MS.gene76249:CDS |
| GTGGTGGTGGATTGGCTGAA+TGG | 0.393857 | 1.1:+78946074 | MS.gene76249:CDS |
| CGGCCACCGCGTCGTGGCGG+CGG | 0.396563 | 1.1:-78945828 | None:intergenic |
| TCTTCGAATCAAATTTCGTT+TGG | 0.406289 | 1.1:+78946100 | MS.gene76249:CDS |
| AATTGATTCGGGTCGGGTTG+AGG | 0.410540 | 1.1:+78946021 | MS.gene76249:CDS |
| GTACTTTCTTCGCCAGAATT+CGG | 0.412820 | 1.1:+78947119 | MS.gene76249:CDS |
| CAGAACTGGGTTCCTCCTCC+TGG | 0.418709 | 1.1:+78947219 | MS.gene76249:CDS |
| CCACCGCGTCGTGGCGGCGG+TGG | 0.422019 | 1.1:-78945825 | None:intergenic |
| GATATACTGGAAATTGATTC+GGG | 0.424201 | 1.1:+78946010 | MS.gene76249:CDS |
| GGAACCCAGTTCTGATCAAT+AGG | 0.426296 | 1.1:-78947210 | None:intergenic |
| GTTCGAGCGAGCTCTGTTGA+TGG | 0.427794 | 1.1:+78945889 | MS.gene76249:CDS |
| TAAGTCTGCGACGGAAATTA+GGG | 0.429071 | 1.1:+78945964 | MS.gene76249:CDS |
| CTGTGTTCTTCTTCAGTCCA+TGG | 0.441575 | 1.1:-78946169 | None:intergenic |
| TTATCCGTCAAACGATTTGC+AGG | 0.442120 | 1.1:+78947281 | MS.gene76249:CDS |
| TGATCCTGCAAATCGTTTGA+CGG | 0.446093 | 1.1:-78947285 | None:intergenic |
| ATTTCCGTCGCAGACTTACC+TGG | 0.452535 | 1.1:-78945959 | None:intergenic |
| AAGATCGCTGAACAAGTTCC+AGG | 0.471264 | 1.1:+78945941 | MS.gene76249:CDS |
| TGGGTTCCTCCTCCTGGTGG+TGG | 0.475189 | 1.1:+78947225 | MS.gene76249:CDS |
| AAACGACAAAATAGATGTAT+CGG | 0.481957 | 1.1:+78945780 | None:intergenic |
| GCCGAGTTATTCTGATGAAT+CGG | 0.482612 | 1.1:+78946045 | MS.gene76249:CDS |
| GAATCGGCTGTGAGTGGTGG+TGG | 0.484996 | 1.1:+78946061 | MS.gene76249:CDS |
| ACTGGAAATTGATTCGGGTC+GGG | 0.496104 | 1.1:+78946015 | MS.gene76249:CDS |
| GCGATCTTCTCCCACCGGTC+CGG | 0.509156 | 1.1:-78945926 | None:intergenic |
| GGCTGTGAGTGGTGGTGGAT+TGG | 0.511900 | 1.1:+78946066 | MS.gene76249:CDS |
| TACTGGAAATTGATTCGGGT+CGG | 0.512665 | 1.1:+78946014 | MS.gene76249:CDS |
| CACCGGTCCGGTAAATCCTC+CGG | 0.521987 | 1.1:-78945914 | None:intergenic |
| CCACCACCGCCGCCACGACG+CGG | 0.524799 | 1.1:+78945822 | MS.gene76249:CDS |
| GCGAGCTCTGTTGATGGTGC+CGG | 0.528587 | 1.1:+78945895 | MS.gene76249:CDS |
| GTATCGGGAGTCAGTTGCTA+TGG | 0.535551 | 1.1:+78945796 | MS.gene76249:CDS |
| TGTTGCATTGAACCACCACC+AGG | 0.537371 | 1.1:-78947237 | None:intergenic |
| AACGACAAAATAGATGTATC+GGG | 0.540302 | 1.1:+78945781 | None:intergenic |
| GTCCACTGAGTTGGTTGAGT+CGG | 0.541227 | 1.1:-78945848 | None:intergenic |
| TCGTTATCACCGCCATGTCT+CGG | 0.543106 | 1.1:-78946130 | None:intergenic |
| GGTGATAACGAGAGGAAGAA+AGG | 0.548667 | 1.1:+78946142 | MS.gene76249:CDS |
| CGGAGGATTTACCGGACCGG+TGG | 0.556040 | 1.1:+78945915 | MS.gene76249:CDS |
| GTTCAGCGATCTTCTCCCAC+CGG | 0.564891 | 1.1:-78945931 | None:intergenic |
| TTTGGTTCGAAGCCGAGACA+TGG | 0.569715 | 1.1:+78946118 | MS.gene76249:CDS |
| AACTGGGTTCCTCCTCCTGG+TGG | 0.574702 | 1.1:+78947222 | MS.gene76249:CDS |
| CTCGCTCGAACAGCTTGTCA+TGG | 0.578069 | 1.1:-78945877 | None:intergenic |
| CAGTTCTGATCAATAGGCAC+AGG | 0.581958 | 1.1:-78947204 | None:intergenic |
| GCATGGCTAGCCACCTGAGT+TGG | 0.585938 | 1.1:-78947090 | None:intergenic |
| TGCCGGAGGATTTACCGGAC+CGG | 0.588914 | 1.1:+78945912 | MS.gene76249:CDS |
| TGGTCTCGAGTCCACTGAGT+TGG | 0.594247 | 1.1:-78945857 | None:intergenic |
| TGTGACAAGAACACCAACTC+AGG | 0.595788 | 1.1:+78947077 | MS.gene76249:intron |
| AGCTCTGTTGATGGTGCCGG+AGG | 0.598113 | 1.1:+78945898 | MS.gene76249:CDS |
| AGTCGGCCACCGCGTCGTGG+CGG | 0.599166 | 1.1:-78945831 | None:intergenic |
| AGGATCAAATGAGTGCATAT+GGG | 0.599865 | 1.1:+78947301 | MS.gene76249:CDS |
| AGAGGAAGAAAGGAACTCCA+TGG | 0.603418 | 1.1:+78946152 | MS.gene76249:CDS |
| AGAATTCGGTGAAGAAAGAG+AGG | 0.605688 | 1.1:+78947133 | MS.gene76249:CDS |
| TGTGCCTATTGATCAGAACT+GGG | 0.607519 | 1.1:+78947206 | MS.gene76249:CDS |
| TTGAGTCGGCCACCGCGTCG+TGG | 0.614569 | 1.1:-78945834 | None:intergenic |
| CCACCGCCGCCACGACGCGG+TGG | 0.616473 | 1.1:+78945825 | MS.gene76249:CDS |
| ATTGAACCACCACCAGGAGG+AGG | 0.621879 | 1.1:-78947231 | None:intergenic |
| TCTGATGAATCGGCTGTGAG+TGG | 0.640798 | 1.1:+78946055 | MS.gene76249:CDS |
| GGCCGACTCAACCAACTCAG+TGG | 0.643487 | 1.1:+78945846 | MS.gene76249:CDS |
| TATTCATGACATTACATCGG+TGG | 0.643904 | 1.1:+78947167 | MS.gene76249:CDS |
| GGAGGATTTACCGGACCGGT+GGG | 0.645323 | 1.1:+78945916 | MS.gene76249:CDS |
| GACATGGCGGTGATAACGAG+AGG | 0.648245 | 1.1:+78946134 | MS.gene76249:CDS |
| GATGAATCGGCTGTGAGTGG+TGG | 0.651355 | 1.1:+78946058 | MS.gene76249:CDS |
| AGTTCCAGGTAAGTCTGCGA+CGG | 0.655266 | 1.1:+78945955 | MS.gene76249:CDS |
| GACAAGAACACCAACTCAGG+TGG | 0.663453 | 1.1:+78947080 | MS.gene76249:intron |
| GCCGATTCATCAGAATAACT+CGG | 0.668580 | 1.1:-78946046 | None:intergenic |
| AAGTATTCATGACATTACAT+CGG | 0.675179 | 1.1:+78947164 | MS.gene76249:CDS |
| TGCATTGAACCACCACCAGG+AGG | 0.701355 | 1.1:-78947234 | None:intergenic |
| CATGGACTGAAGAAGAACAC+AGG | 0.714829 | 1.1:+78946170 | MS.gene76249:CDS |
| GGTTCGAAGCCGAGACATGG+CGG | 0.716484 | 1.1:+78946121 | MS.gene76249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCAAAAAAAAAAAAAAAAA+CGG | + | chr1.1:78946591-78946610 | MS.gene76249:intron | 10.0% |
| !!! | AATTTAGTTTTTTTTTTTCT+GGG | + | chr1.1:78946227-78946246 | MS.gene76249:intron | 10.0% |
| !!! | TTTAATTTTAATCTTTTTTG+GGG | + | chr1.1:78946352-78946371 | MS.gene76249:intron | 10.0% |
| !! | AAAAGTTATGTTAAAGATAA+AGG | - | chr1.1:78946292-78946311 | None:intergenic | 15.0% |
| !!! | CAATTTAGTTTTTTTTTTTC+TGG | + | chr1.1:78946226-78946245 | MS.gene76249:intron | 15.0% |
| !!! | GTTTATTGGTTTTTATTTTA+GGG | + | chr1.1:78946249-78946268 | MS.gene76249:intron | 15.0% |
| !!! | TTAATTTTAATCTTTTTTGG+GGG | + | chr1.1:78946353-78946372 | MS.gene76249:intron | 15.0% |
| !!! | TTATCTTTAACATAACTTTT+TGG | + | chr1.1:78946292-78946311 | MS.gene76249:intron | 15.0% |
| !! | TACAAAATGTAGTTAAATAG+AGG | + | chr1.1:78946920-78946939 | MS.gene76249:intron | 20.0% |
| !!! | GGTTTATTGGTTTTTATTTT+AGG | + | chr1.1:78946248-78946267 | MS.gene76249:intron | 20.0% |
| !!! | TAATTTTAATCTTTTTTGGG+GGG | + | chr1.1:78946354-78946373 | MS.gene76249:intron | 20.0% |
| !!! | TTAACATAACTTTTTGGAAT+TGG | + | chr1.1:78946298-78946317 | MS.gene76249:intron | 20.0% |
| !!! | TTTTTTTTTTCTGGGTTTAT+TGG | + | chr1.1:78946235-78946254 | MS.gene76249:intron | 20.0% |
| ! | AAGTATTCATGACATTACAT+CGG | + | chr1.1:78947164-78947183 | MS.gene76249:CDS | 25.0% |
| ! | ACTATAGCAATTTAACATAG+CGG | + | chr1.1:78946782-78946801 | MS.gene76249:intron | 25.0% |
| ! | AGAATTTGAACAAATCACTT+TGG | + | chr1.1:78946877-78946896 | MS.gene76249:intron | 25.0% |
| ! | ATGTTAAATTGCTATAGTGT+CGG | - | chr1.1:78946780-78946799 | None:intergenic | 25.0% |
| ! | ATTCCCATTCCTTAAAATTA+TGG | - | chr1.1:78946327-78946346 | None:intergenic | 25.0% |
| ! | TAAACAATGATGTCAAATAG+CGG | + | chr1.1:78946625-78946644 | MS.gene76249:intron | 25.0% |
| ! | TACAAAATGTCCTTGAATAA+AGG | + | chr1.1:78946749-78946768 | MS.gene76249:intron | 25.0% |
| ! | TGATATACTGGAAATTGATT+CGG | + | chr1.1:78946009-78946028 | MS.gene76249:CDS | 25.0% |
| !! | AATTGGATGCCATAATTTTA+AGG | + | chr1.1:78946315-78946334 | MS.gene76249:intron | 25.0% |
| !!! | ATGCCATAATTTTAAGGAAT+GGG | + | chr1.1:78946321-78946340 | MS.gene76249:intron | 25.0% |
| ACACTAGCAATTTAACATAG+AGG | + | chr1.1:78946951-78946970 | MS.gene76249:intron | 30.0% | |
| AGATAACATAAAATAGTGGC+GGG | - | chr1.1:78946985-78947004 | None:intergenic | 30.0% | |
| CAGATAACATAAAATAGTGG+CGG | - | chr1.1:78946986-78947005 | None:intergenic | 30.0% | |
| GCACAGATAACATAAAATAG+TGG | - | chr1.1:78946989-78947008 | None:intergenic | 30.0% | |
| GCATATGGGTATTCAAATTA+TGG | + | chr1.1:78947315-78947334 | MS.gene76249:CDS | 30.0% | |
| TATTACCGATCAAAAGTGAT+AGG | - | chr1.1:78946719-78946738 | None:intergenic | 30.0% | |
| TCTTCGAATCAAATTTCGTT+TGG | + | chr1.1:78946100-78946119 | MS.gene76249:CDS | 30.0% | |
| ! | CCTTGTTTAACATAAAACAG+CGG | - | chr1.1:78946820-78946839 | None:intergenic | 30.0% |
| ! | CTATTTTATGTTATCTGTGC+AGG | + | chr1.1:78946989-78947008 | MS.gene76249:intron | 30.0% |
| ! | GATATACTGGAAATTGATTC+GGG | + | chr1.1:78946010-78946029 | MS.gene76249:CDS | 30.0% |
| ! | GATTTGTTCAAATTCTGCTA+CGG | - | chr1.1:78946873-78946892 | None:intergenic | 30.0% |
| !! | AGGTTCTAAAAAGTGTATTG+CGG | - | chr1.1:78946699-78946718 | None:intergenic | 30.0% |
| !! | GATGCCATAATTTTAAGGAA+TGG | + | chr1.1:78946320-78946339 | MS.gene76249:intron | 30.0% |
| !! | TAGAACCTATCACTTTTGAT+CGG | + | chr1.1:78946711-78946730 | MS.gene76249:intron | 30.0% |
| AGGATCAAATGAGTGCATAT+GGG | + | chr1.1:78947301-78947320 | MS.gene76249:CDS | 35.0% | |
| GAGCAAACCACAAAATTTGA+GGG | - | chr1.1:78946569-78946588 | None:intergenic | 35.0% | |
| GTTTAACATAAAACAGCGGT+GGG | - | chr1.1:78946816-78946835 | None:intergenic | 35.0% | |
| TATTCATGACATTACATCGG+TGG | + | chr1.1:78947167-78947186 | MS.gene76249:CDS | 35.0% | |
| TGAGCAAACCACAAAATTTG+AGG | - | chr1.1:78946570-78946589 | None:intergenic | 35.0% | |
| TGTTAAACAAGGATGTCAAG+TGG | + | chr1.1:78946828-78946847 | MS.gene76249:intron | 35.0% | |
| TGTTTAACATAAAACAGCGG+TGG | - | chr1.1:78946817-78946836 | None:intergenic | 35.0% | |
| TTATTGGGCTGACCAAATTT+GGG | + | chr1.1:78947019-78947038 | MS.gene76249:intron | 35.0% | |
| ! | AGCTTTGGTTCATGATATAC+TGG | + | chr1.1:78945997-78946016 | MS.gene76249:CDS | 35.0% |
| ! | GTCTAAACCCTCAAATTTTG+TGG | + | chr1.1:78946559-78946578 | MS.gene76249:intron | 35.0% |
| !! | CCGCTGTTTTATGTTAAACA+AGG | + | chr1.1:78946817-78946836 | MS.gene76249:intron | 35.0% |
| !!! | GAAGAAAGTACTTTTGAGCA+TGG | - | chr1.1:78947110-78947129 | None:intergenic | 35.0% |
| CAGGATCAAATGAGTGCATA+TGG | + | chr1.1:78947300-78947319 | MS.gene76249:CDS | 40.0% | |
| CCAAATTTGGGAAAGGAGAT+TGG | + | chr1.1:78947031-78947050 | MS.gene76249:intron | 40.0% | |
| CCAATCTCCTTTCCCAAATT+TGG | - | chr1.1:78947034-78947053 | None:intergenic | 40.0% | |
| CTTATTGGGCTGACCAAATT+TGG | + | chr1.1:78947018-78947037 | MS.gene76249:intron | 40.0% | |
| GCCGAGTTATTCTGATGAAT+CGG | + | chr1.1:78946045-78946064 | MS.gene76249:CDS | 40.0% | |
| GTACTTTCTTCGCCAGAATT+CGG | + | chr1.1:78947119-78947138 | MS.gene76249:CDS | 40.0% | |
| GTCGGTATAGCCTTTATTCA+AGG | - | chr1.1:78946762-78946781 | None:intergenic | 40.0% | |
| TAAACAAGGATGTCAAGTGG+CGG | + | chr1.1:78946831-78946850 | MS.gene76249:intron | 40.0% | |
| TAAGTCTGCGACGGAAATTA+GGG | + | chr1.1:78945964-78945983 | MS.gene76249:CDS | 40.0% | |
| TAGGGATCACTATGAAGCTT+TGG | + | chr1.1:78945982-78946001 | MS.gene76249:CDS | 40.0% | |
| TCTCTTTCTTCACCGAATTC+TGG | - | chr1.1:78947134-78947153 | None:intergenic | 40.0% | |
| TGATCCTGCAAATCGTTTGA+CGG | - | chr1.1:78947288-78947307 | None:intergenic | 40.0% | |
| TGTGCCTATTGATCAGAACT+GGG | + | chr1.1:78947206-78947225 | MS.gene76249:CDS | 40.0% | |
| TTATCCGTCAAACGATTTGC+AGG | + | chr1.1:78947281-78947300 | MS.gene76249:CDS | 40.0% | |
| ! | AGAATTCGGTGAAGAAAGAG+AGG | + | chr1.1:78947133-78947152 | MS.gene76249:CDS | 40.0% |
| ! | GCCGATTCATCAGAATAACT+CGG | - | chr1.1:78946049-78946068 | None:intergenic | 40.0% |
| !! | GAGATTGGAGAAGCATTTCA+AGG | + | chr1.1:78947046-78947065 | MS.gene76249:intron | 40.0% |
| !! | TACTGGAAATTGATTCGGGT+CGG | + | chr1.1:78946014-78946033 | MS.gene76249:CDS | 40.0% |
| !! | TGTGCAGGCTGTTTCTTATT+GGG | + | chr1.1:78947004-78947023 | MS.gene76249:intron | 40.0% |
| !!! | AATCTTTTTTGGGGGGTTTC+TGG | + | chr1.1:78946361-78946380 | MS.gene76249:intron | 40.0% |
| !!! | ATCTTTTTTGGGGGGTTTCT+GGG | + | chr1.1:78946362-78946381 | MS.gene76249:intron | 40.0% |
| AAGATCGCTGAACAAGTTCC+AGG | + | chr1.1:78945941-78945960 | MS.gene76249:CDS | 45.0% | |
| AGAGGAAGAAAGGAACTCCA+TGG | + | chr1.1:78946152-78946171 | MS.gene76249:CDS | 45.0% | |
| ATGTCAAATAGCGGTTGCAG+TGG | + | chr1.1:78946634-78946653 | MS.gene76249:intron | 45.0% | |
| CTGTGCCTATTGATCAGAAC+TGG | + | chr1.1:78947205-78947224 | MS.gene76249:CDS | 45.0% | |
| CTGTGTTCTTCTTCAGTCCA+TGG | - | chr1.1:78946172-78946191 | None:intergenic | 45.0% | |
| GTAAGTCTGCGACGGAAATT+AGG | + | chr1.1:78945963-78945982 | MS.gene76249:CDS | 45.0% | |
| TGTGACAAGAACACCAACTC+AGG | + | chr1.1:78947077-78947096 | MS.gene76249:intron | 45.0% | |
| ! | CAGTTCTGATCAATAGGCAC+AGG | - | chr1.1:78947207-78947226 | None:intergenic | 45.0% |
| ! | CATGGACTGAAGAAGAACAC+AGG | + | chr1.1:78946170-78946189 | MS.gene76249:CDS | 45.0% |
| ! | GGAACCCAGTTCTGATCAAT+AGG | - | chr1.1:78947213-78947232 | None:intergenic | 45.0% |
| ! | GGTGATAACGAGAGGAAGAA+AGG | + | chr1.1:78946142-78946161 | MS.gene76249:CDS | 45.0% |
| !! | ACTGGAAATTGATTCGGGTC+GGG | + | chr1.1:78946015-78946034 | MS.gene76249:CDS | 45.0% |
| !! | CTGTGCAGGCTGTTTCTTAT+TGG | + | chr1.1:78947003-78947022 | MS.gene76249:intron | 45.0% |
| !!! | AATTTAATTTTAATCTTTTT+TGG | + | chr1.1:78946350-78946369 | MS.gene76249:intron | 5.0% |
| !!! | ATTTAATTTTAATCTTTTTT+GGG | + | chr1.1:78946351-78946370 | MS.gene76249:intron | 5.0% |
| AGTTCCAGGTAAGTCTGCGA+CGG | + | chr1.1:78945955-78945974 | MS.gene76249:CDS | 50.0% | |
| ATTTCCGTCGCAGACTTACC+TGG | - | chr1.1:78945962-78945981 | None:intergenic | 50.0% | |
| GACAAGAACACCAACTCAGG+TGG | + | chr1.1:78947080-78947099 | MS.gene76249:intron | 50.0% | |
| GGGCTGACCAAATTTGGGAA+AGG | + | chr1.1:78947024-78947043 | MS.gene76249:intron | 50.0% | |
| GTATCGGGAGTCAGTTGCTA+TGG | + | chr1.1:78945796-78945815 | MS.gene76249:CDS | 50.0% | |
| TCGTTATCACCGCCATGTCT+CGG | - | chr1.1:78946133-78946152 | None:intergenic | 50.0% | |
| TCTGATGAATCGGCTGTGAG+TGG | + | chr1.1:78946055-78946074 | MS.gene76249:CDS | 50.0% | |
| TGTTGCATTGAACCACCACC+AGG | - | chr1.1:78947240-78947259 | None:intergenic | 50.0% | |
| ! | TTTGGTTCGAAGCCGAGACA+TGG | + | chr1.1:78946118-78946137 | MS.gene76249:CDS | 50.0% |
| !! | AATTGATTCGGGTCGGGTTG+AGG | + | chr1.1:78946021-78946040 | MS.gene76249:CDS | 50.0% |
| !! | GTCCACTGAGTTGGTTGAGT+CGG | - | chr1.1:78945851-78945870 | None:intergenic | 50.0% |
| !! | TGGTGGTGGATTGGCTGAAT+GGG | + | chr1.1:78946075-78946094 | MS.gene76249:CDS | 50.0% |
| ATTGAACCACCACCAGGAGG+AGG | - | chr1.1:78947234-78947253 | None:intergenic | 55.0% | |
| CTCGCTCGAACAGCTTGTCA+TGG | - | chr1.1:78945880-78945899 | None:intergenic | 55.0% | |
| GATGAATCGGCTGTGAGTGG+TGG | + | chr1.1:78946058-78946077 | MS.gene76249:CDS | 55.0% | |
| GTTCAGCGATCTTCTCCCAC+CGG | - | chr1.1:78945934-78945953 | None:intergenic | 55.0% | |
| GTTCGAGCGAGCTCTGTTGA+TGG | + | chr1.1:78945889-78945908 | MS.gene76249:CDS | 55.0% | |
| TGCATTGAACCACCACCAGG+AGG | - | chr1.1:78947237-78947256 | None:intergenic | 55.0% | |
| TGGTCTCGAGTCCACTGAGT+TGG | - | chr1.1:78945860-78945879 | None:intergenic | 55.0% | |
| ! | GACATGGCGGTGATAACGAG+AGG | + | chr1.1:78946134-78946153 | MS.gene76249:CDS | 55.0% |
| ! | GATGGTGCCGGAGGATTTAC+CGG | + | chr1.1:78945907-78945926 | MS.gene76249:CDS | 55.0% |
| !! | GTGGTGGTGGATTGGCTGAA+TGG | + | chr1.1:78946074-78946093 | MS.gene76249:CDS | 55.0% |
| AACTGGGTTCCTCCTCCTGG+TGG | + | chr1.1:78947222-78947241 | MS.gene76249:CDS | 60.0% | |
| CACCGGTCCGGTAAATCCTC+CGG | - | chr1.1:78945917-78945936 | None:intergenic | 60.0% | |
| CAGAACTGGGTTCCTCCTCC+TGG | + | chr1.1:78947219-78947238 | MS.gene76249:CDS | 60.0% | |
| GAATCGGCTGTGAGTGGTGG+TGG | + | chr1.1:78946061-78946080 | MS.gene76249:CDS | 60.0% | |
| GGAGGATTTACCGGACCGGT+GGG | + | chr1.1:78945916-78945935 | MS.gene76249:CDS | 60.0% | |
| GGTTCGAAGCCGAGACATGG+CGG | + | chr1.1:78946121-78946140 | MS.gene76249:CDS | 60.0% | |
| TGCCGGAGGATTTACCGGAC+CGG | + | chr1.1:78945912-78945931 | MS.gene76249:CDS | 60.0% | |
| ! | GCATGGCTAGCCACCTGAGT+TGG | - | chr1.1:78947093-78947112 | None:intergenic | 60.0% |
| ! | GGCCGACTCAACCAACTCAG+TGG | + | chr1.1:78945846-78945865 | MS.gene76249:CDS | 60.0% |
| !! | AGCTCTGTTGATGGTGCCGG+AGG | + | chr1.1:78945898-78945917 | MS.gene76249:CDS | 60.0% |
| !! | GCGAGCTCTGTTGATGGTGC+CGG | + | chr1.1:78945895-78945914 | MS.gene76249:CDS | 60.0% |
| !! | GGCTGTGAGTGGTGGTGGAT+TGG | + | chr1.1:78946066-78946085 | MS.gene76249:CDS | 60.0% |
| CGGAGGATTTACCGGACCGG+TGG | + | chr1.1:78945915-78945934 | MS.gene76249:CDS | 65.0% | |
| GCGATCTTCTCCCACCGGTC+CGG | - | chr1.1:78945929-78945948 | None:intergenic | 65.0% | |
| TGGGTTCCTCCTCCTGGTGG+TGG | + | chr1.1:78947225-78947244 | MS.gene76249:CDS | 65.0% | |
| TTGAGTCGGCCACCGCGTCG+TGG | - | chr1.1:78945837-78945856 | None:intergenic | 70.0% | |
| AGTCGGCCACCGCGTCGTGG+CGG | - | chr1.1:78945834-78945853 | None:intergenic | 75.0% | |
| ! | CCACCACCGCCGCCACGACG+CGG | + | chr1.1:78945822-78945841 | MS.gene76249:CDS | 80.0% |
| ! | CCACCGCCGCCACGACGCGG+TGG | + | chr1.1:78945825-78945844 | MS.gene76249:CDS | 85.0% |
| ! | CCACCGCGTCGTGGCGGCGG+TGG | - | chr1.1:78945828-78945847 | None:intergenic | 85.0% |
| ! | CCGCGTCGTGGCGGCGGTGG+TGG | - | chr1.1:78945825-78945844 | None:intergenic | 85.0% |
| ! | CGGCCACCGCGTCGTGGCGG+CGG | - | chr1.1:78945831-78945850 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78945794 | 78947350 | 78945794 | ID=MS.gene76249 |
| chr1.1 | mRNA | 78945794 | 78947350 | 78945794 | ID=MS.gene76249.t1;Parent=MS.gene76249 |
| chr1.1 | exon | 78945794 | 78946191 | 78945794 | ID=MS.gene76249.t1.exon1;Parent=MS.gene76249.t1 |
| chr1.1 | CDS | 78945794 | 78946191 | 78945794 | ID=cds.MS.gene76249.t1;Parent=MS.gene76249.t1 |
| chr1.1 | exon | 78947086 | 78947350 | 78947086 | ID=MS.gene76249.t1.exon2;Parent=MS.gene76249.t1 |
| chr1.1 | CDS | 78947086 | 78947350 | 78947086 | ID=cds.MS.gene76249.t1;Parent=MS.gene76249.t1 |
| Gene Sequence |
| Protein sequence |
