Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76417.t1 | XP_024628461.1 | 99.3 | 412 | 3 | 0 | 1 | 412 | 1 | 412 | 2.80E-239 | 837.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76417.t1 | Q6Z2G9 | 62.2 | 429 | 144 | 5 | 1 | 412 | 1 | 428 | 2.8e-142 | 506.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76417.t1 | A0A072TSP9 | 99.3 | 412 | 3 | 0 | 1 | 412 | 1 | 412 | 2.0e-239 | 837.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76417.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76417 | MS.gene27297 | PPI |
| MS.gene76417 | MS.gene24262 | PPI |
| MS.gene76417 | MS.gene90691 | PPI |
| MS.gene76417 | MS.gene26978 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76417.t1 | MTR_8g077195 | 99.272 | 412 | 3 | 0 | 1 | 412 | 1 | 412 | 0.0 | 844 |
| MS.gene76417.t1 | MTR_5g020580 | 73.317 | 416 | 107 | 2 | 1 | 412 | 1 | 416 | 0.0 | 634 |
| MS.gene76417.t1 | MTR_8g077675 | 70.660 | 409 | 102 | 7 | 1 | 405 | 1 | 395 | 0.0 | 548 |
| MS.gene76417.t1 | MTR_8g077620 | 67.237 | 409 | 103 | 8 | 1 | 403 | 1 | 384 | 0.0 | 524 |
| MS.gene76417.t1 | MTR_1g022370 | 59.259 | 432 | 146 | 7 | 1 | 412 | 1 | 422 | 2.59e-175 | 496 |
| MS.gene76417.t1 | MTR_2g020280 | 57.453 | 369 | 148 | 3 | 46 | 412 | 32 | 393 | 1.86e-148 | 427 |
| MS.gene76417.t1 | MTR_2g007930 | 52.326 | 430 | 184 | 8 | 1 | 412 | 1 | 427 | 9.75e-147 | 424 |
| MS.gene76417.t1 | MTR_1g098790 | 51.136 | 440 | 178 | 12 | 1 | 412 | 1 | 431 | 1.62e-143 | 416 |
| MS.gene76417.t1 | MTR_1g088960 | 51.429 | 420 | 178 | 6 | 1 | 412 | 1 | 402 | 9.07e-143 | 412 |
| MS.gene76417.t1 | MTR_8g077650 | 57.990 | 388 | 91 | 10 | 37 | 409 | 3 | 333 | 1.80e-134 | 389 |
| MS.gene76417.t1 | MTR_2g076200 | 51.944 | 360 | 143 | 2 | 53 | 412 | 42 | 371 | 3.15e-126 | 369 |
| MS.gene76417.t1 | MTR_2g020280 | 58.140 | 301 | 117 | 3 | 114 | 412 | 1 | 294 | 2.41e-118 | 346 |
| MS.gene76417.t1 | MTR_2g076210 | 45.479 | 376 | 168 | 7 | 41 | 412 | 25 | 367 | 1.61e-99 | 301 |
| MS.gene76417.t1 | MTR_8g077640 | 65.919 | 223 | 50 | 4 | 1 | 205 | 46 | 260 | 5.37e-81 | 254 |
| MS.gene76417.t1 | MTR_8g077640 | 58.537 | 123 | 50 | 1 | 281 | 402 | 261 | 383 | 4.23e-38 | 142 |
| MS.gene76417.t1 | MTR_1g023800 | 61.224 | 147 | 54 | 2 | 1 | 146 | 1 | 145 | 8.16e-55 | 179 |
| MS.gene76417.t1 | MTR_0210s0010 | 52.475 | 101 | 41 | 2 | 96 | 196 | 9 | 102 | 2.49e-26 | 102 |
| MS.gene76417.t1 | MTR_0479s0040 | 57.143 | 70 | 24 | 1 | 112 | 181 | 12 | 75 | 1.38e-17 | 77.4 |
| MS.gene76417.t1 | MTR_2g105390 | 27.513 | 189 | 114 | 7 | 233 | 411 | 184 | 359 | 7.66e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76417.t1 | AT2G18280 | 62.981 | 416 | 127 | 9 | 1 | 412 | 1 | 393 | 1.08e-177 | 501 |
| MS.gene76417.t1 | AT2G18280 | 62.981 | 416 | 127 | 9 | 1 | 412 | 1 | 393 | 1.08e-177 | 501 |
| MS.gene76417.t1 | AT2G47900 | 53.365 | 416 | 181 | 6 | 1 | 412 | 1 | 407 | 1.88e-149 | 430 |
| MS.gene76417.t1 | AT2G47900 | 53.494 | 415 | 181 | 6 | 1 | 412 | 1 | 406 | 3.99e-149 | 429 |
| MS.gene76417.t1 | AT2G47900 | 53.494 | 415 | 181 | 6 | 1 | 412 | 1 | 406 | 3.99e-149 | 429 |
| MS.gene76417.t1 | AT1G47270 | 54.545 | 429 | 137 | 11 | 1 | 412 | 1 | 388 | 7.30e-149 | 427 |
| MS.gene76417.t1 | AT1G47270 | 54.545 | 429 | 137 | 11 | 1 | 412 | 25 | 412 | 9.43e-149 | 428 |
| MS.gene76417.t1 | AT1G47270 | 54.545 | 429 | 137 | 11 | 1 | 412 | 26 | 413 | 9.86e-149 | 428 |
| MS.gene76417.t1 | AT1G25280 | 49.889 | 449 | 184 | 9 | 1 | 412 | 1 | 445 | 5.96e-142 | 412 |
| MS.gene76417.t1 | AT1G76900 | 48.908 | 458 | 185 | 8 | 1 | 412 | 1 | 455 | 1.19e-138 | 404 |
| MS.gene76417.t1 | AT1G76900 | 48.908 | 458 | 185 | 8 | 1 | 412 | 1 | 455 | 1.19e-138 | 404 |
| MS.gene76417.t1 | AT1G76900 | 48.908 | 458 | 185 | 8 | 1 | 412 | 1 | 455 | 1.19e-138 | 404 |
| MS.gene76417.t1 | AT1G43640 | 47.045 | 440 | 194 | 11 | 1 | 412 | 1 | 429 | 8.88e-130 | 380 |
| MS.gene76417.t1 | AT1G53320 | 51.791 | 363 | 145 | 4 | 53 | 412 | 44 | 379 | 7.09e-124 | 363 |
| MS.gene76417.t1 | AT3G06380 | 51.507 | 365 | 155 | 7 | 53 | 412 | 33 | 380 | 8.67e-123 | 361 |
| MS.gene76417.t1 | AT5G18680 | 50.541 | 370 | 162 | 7 | 49 | 412 | 35 | 389 | 1.61e-119 | 353 |
| MS.gene76417.t1 | AT1G43640 | 48.787 | 371 | 159 | 8 | 65 | 412 | 1 | 363 | 4.66e-117 | 346 |
| MS.gene76417.t1 | AT3G06380 | 51.163 | 301 | 126 | 6 | 116 | 412 | 5 | 288 | 5.20e-98 | 294 |
| MS.gene76417.t1 | AT5G18680 | 51.290 | 310 | 131 | 6 | 108 | 412 | 3 | 297 | 1.63e-97 | 293 |
| MS.gene76417.t1 | AT1G25280 | 51.866 | 268 | 101 | 5 | 172 | 412 | 1 | 267 | 5.41e-85 | 260 |
| MS.gene76417.t1 | AT1G25280 | 51.866 | 268 | 101 | 5 | 172 | 412 | 1 | 267 | 5.41e-85 | 260 |
| MS.gene76417.t1 | AT1G61940 | 54.023 | 87 | 40 | 0 | 56 | 142 | 1 | 87 | 5.71e-28 | 111 |
| MS.gene76417.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 56 | 116 | 1 | 61 | 2.46e-16 | 78.6 |
Find 114 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCCTTCTTATCTTTC+TGG | 0.112808 | 8.1:+30522019 | None:intergenic |
| ATTACCTGCTTCAATGAAAT+AGG | 0.231585 | 8.1:+30522461 | None:intergenic |
| ATGATGCAGTGCACTCTTCT+TGG | 0.233427 | 8.1:+30521645 | None:intergenic |
| TCTACCTCCTGAATTGCTTT+TGG | 0.284311 | 8.1:-30522627 | MS.gene76417:CDS |
| TGACCGACATAGCCAATTCT+TGG | 0.292823 | 8.1:+30522712 | None:intergenic |
| ATCTTACAGTTTGGAAAGAT+TGG | 0.295811 | 8.1:-30521279 | MS.gene76417:CDS |
| GAGGTAACGATGTTGGGGTT+GGG | 0.312924 | 8.1:+30521580 | None:intergenic |
| TATACCTATCTCAGCTATTC+AGG | 0.328559 | 8.1:-30521616 | MS.gene76417:CDS |
| ATCCGATCCAGTGCTTTATT+AGG | 0.329707 | 8.1:-30522328 | MS.gene76417:CDS |
| CTTGCACTTGGTCGACGATT+AGG | 0.330477 | 8.1:+30521762 | None:intergenic |
| CTCTCATTCACAAGCAGGTT+TGG | 0.347646 | 8.1:+30521176 | None:intergenic |
| TCCAATTGAACCTATTCAAC+AGG | 0.350379 | 8.1:-30522663 | MS.gene76417:CDS |
| ATATTTGAGGTAACGATGTT+GGG | 0.363096 | 8.1:+30521574 | None:intergenic |
| TTTACCAACATATTTGTTGC+TGG | 0.366133 | 8.1:+30521950 | None:intergenic |
| CCAGAGAGCATTTAGCTCAT+AGG | 0.369135 | 8.1:+30521677 | None:intergenic |
| CCCTGTTGAATAGGTTCAAT+TGG | 0.369838 | 8.1:+30522662 | None:intergenic |
| GAAAGGGTAATCTTACAGTT+TGG | 0.371540 | 8.1:-30521288 | MS.gene76417:CDS |
| AGGTAACGATGTTGGGGTTG+GGG | 0.375686 | 8.1:+30521581 | None:intergenic |
| ATTATGTCCAAAAGCAATTC+AGG | 0.377900 | 8.1:+30522620 | None:intergenic |
| CACCGACTTTGTCATATCCT+TGG | 0.386843 | 8.1:-30521994 | MS.gene76417:CDS |
| GTGTTGGTGCCTAAACTTCA+TGG | 0.395112 | 8.1:-30521394 | MS.gene76417:CDS |
| ATCGAGCCTTGGCTCGGTTC+TGG | 0.397446 | 8.1:+30521468 | None:intergenic |
| CTTCGTGTTGTACTTAGGTT+TGG | 0.400572 | 8.1:-30522285 | MS.gene76417:CDS |
| TGAGGTAACGATGTTGGGGT+TGG | 0.418830 | 8.1:+30521579 | None:intergenic |
| TAACACGACCCATGAAGTTT+AGG | 0.421461 | 8.1:+30521385 | None:intergenic |
| CCAGCATGTAACAATCTTGT+TGG | 0.440142 | 8.1:-30521708 | MS.gene76417:CDS |
| TCAAACAGATTGCAAAGGCT+TGG | 0.450978 | 8.1:+30521211 | None:intergenic |
| GTGCTTCGGTATGTAAATCA+TGG | 0.451227 | 8.1:-30522541 | MS.gene76417:CDS |
| ACCGACTTTGTCATATCCTT+GGG | 0.452958 | 8.1:-30521993 | MS.gene76417:CDS |
| AAAACAACAACAGCACGAGC+AGG | 0.453602 | 8.1:+30522566 | None:intergenic |
| TTTCTTCCGCTGAGCAAGAA+AGG | 0.454492 | 8.1:-30521305 | MS.gene76417:CDS |
| CCTTCCTGAATAGCTGAGAT+AGG | 0.455053 | 8.1:+30521612 | None:intergenic |
| ATTTCCTATTTCATTGAAGC+AGG | 0.465510 | 8.1:-30522465 | MS.gene76417:intron |
| GGGGTTCTGACACCAAGAAT+TGG | 0.470215 | 8.1:-30522724 | MS.gene76417:CDS |
| AATATTTGAGGTAACGATGT+TGG | 0.472032 | 8.1:+30521573 | None:intergenic |
| AGCATTTAGCTCATAGGAAA+TGG | 0.472326 | 8.1:+30521683 | None:intergenic |
| TCGACCTTCGTGTTGTACTT+AGG | 0.473609 | 8.1:-30522290 | MS.gene76417:CDS |
| GCCCACTGTCCCTGTTGAAT+AGG | 0.474061 | 8.1:+30522653 | None:intergenic |
| AGTGCTGGTGAGGGAGGAAA+AGG | 0.475950 | 8.1:+30521543 | None:intergenic |
| CCAGAGTACGAATCTGTCAT+TGG | 0.478687 | 8.1:+30521507 | None:intergenic |
| AAAGGTTCACTGAATATTTG+AGG | 0.481469 | 8.1:+30521561 | None:intergenic |
| TTGAAGAGAGTGAGACATCT+TGG | 0.483464 | 8.1:-30522589 | MS.gene76417:CDS |
| GTTGTCATATATAGCAAACT+TGG | 0.484168 | 8.1:+30521812 | None:intergenic |
| CGATCCAGTGCTTTATTAGG+AGG | 0.490560 | 8.1:-30522325 | MS.gene76417:CDS |
| CTAAATGCTCTCTGGACAAG+AGG | 0.490562 | 8.1:-30521669 | MS.gene76417:CDS |
| CCAAGGCTCGATGGACTCCT+TGG | 0.492424 | 8.1:-30521457 | MS.gene76417:CDS |
| CCTATGAGCTAAATGCTCTC+TGG | 0.493546 | 8.1:-30521677 | MS.gene76417:CDS |
| CACAGCTCTCATTCACAAGC+AGG | 0.495782 | 8.1:+30521171 | None:intergenic |
| GGTTCAATTGGAGTTACATC+CGG | 0.496479 | 8.1:+30522674 | None:intergenic |
| GTCAAAGTCACATGTTGCTC+CGG | 0.499201 | 8.1:-30522693 | MS.gene76417:CDS |
| TTGTTACATGCTGGAACTCT+TGG | 0.500747 | 8.1:+30521717 | None:intergenic |
| TCGGTTCTGGTAGCTCTGAT+AGG | 0.502232 | 8.1:+30521481 | None:intergenic |
| AAGCATAGTCCGCGAACTCA+AGG | 0.507358 | 8.1:-30522780 | MS.gene76417:CDS |
| ACAGATTGCAAAGGCTTGGA+AGG | 0.518500 | 8.1:+30521215 | None:intergenic |
| GATCGGATAATCACGAGGAC+CGG | 0.524270 | 8.1:+30522343 | None:intergenic |
| TGCAAGACTTAATTCTAAGC+AGG | 0.525564 | 8.1:-30521745 | MS.gene76417:CDS |
| AATAGGTAGCATATCAAAGC+GGG | 0.526116 | 8.1:-30522744 | MS.gene76417:CDS |
| TTCTTCCGCTGAGCAAGAAA+GGG | 0.530855 | 8.1:-30521304 | MS.gene76417:CDS |
| CCTATCTCAGCTATTCAGGA+AGG | 0.539583 | 8.1:-30521612 | MS.gene76417:CDS |
| CCAAGGAGTCCATCGAGCCT+TGG | 0.540676 | 8.1:+30521457 | None:intergenic |
| TGTTCCTCCTAATAAAGCAC+TGG | 0.546307 | 8.1:+30522321 | None:intergenic |
| ATCGGATAATCACGAGGACC+GGG | 0.546623 | 8.1:+30522344 | None:intergenic |
| TCTTTCAGTGCTGGTGAGGG+AGG | 0.551006 | 8.1:+30521537 | None:intergenic |
| CCAATGACAGATTCGTACTC+TGG | 0.552500 | 8.1:-30521507 | MS.gene76417:CDS |
| TAGCCGCCAGAAAGATAAGA+AGG | 0.555283 | 8.1:-30522025 | MS.gene76417:CDS |
| CCAACAAGATTGTTACATGC+TGG | 0.555601 | 8.1:+30521708 | None:intergenic |
| TGAAGTTTAGGCACCAACAC+TGG | 0.557707 | 8.1:+30521397 | None:intergenic |
| AGCATAGTCCGCGAACTCAA+GGG | 0.558850 | 8.1:-30522779 | MS.gene76417:CDS |
| CTTGATAATCTCTTTAGTAA+CGG | 0.564764 | 8.1:+30522514 | None:intergenic |
| CTATCTCAGCTATTCAGGAA+GGG | 0.566111 | 8.1:-30521611 | MS.gene76417:CDS |
| CGAGCCAGCAACAAATATGT+TGG | 0.568606 | 8.1:-30521954 | MS.gene76417:CDS |
| ACCTATTCAACAGGGACAGT+GGG | 0.571704 | 8.1:-30522654 | MS.gene76417:CDS |
| GAGTCCATCGAGCCTTGGCT+CGG | 0.572639 | 8.1:+30521462 | None:intergenic |
| TATCTCAGCTATTCAGGAAG+GGG | 0.574086 | 8.1:-30521610 | MS.gene76417:CDS |
| TGTTGGTGCCTAAACTTCAT+GGG | 0.575598 | 8.1:-30521393 | MS.gene76417:CDS |
| CTCCTAATAAAGCACTGGAT+CGG | 0.579253 | 8.1:+30522326 | None:intergenic |
| TGGAGCTGCTCATGCCACCT+AGG | 0.585203 | 8.1:+30521417 | None:intergenic |
| GGCATGAGCAGCTCCAGTGT+TGG | 0.585590 | 8.1:-30521410 | MS.gene76417:CDS |
| GGCCCTTCTTATCTTTCTGG+CGG | 0.587954 | 8.1:+30522022 | None:intergenic |
| GGTTGAACTGCAGCGTCATG+TGG | 0.590130 | 8.1:+30521783 | None:intergenic |
| AGAAAGATAAGAAGGGCCAC+AGG | 0.590973 | 8.1:-30522017 | MS.gene76417:CDS |
| CTGCAGCGTCATGTGGAGGT+TGG | 0.594900 | 8.1:+30521790 | None:intergenic |
| ACACCAAGAATTGGCTATGT+CGG | 0.595581 | 8.1:-30522715 | MS.gene76417:CDS |
| AGAACCGAGCCAAGGCTCGA+TGG | 0.600159 | 8.1:-30521466 | MS.gene76417:CDS |
| GCATAGTCCGCGAACTCAAG+GGG | 0.603504 | 8.1:-30522778 | MS.gene76417:CDS |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.610317 | 8.1:+30521225 | None:intergenic |
| GAGTGGGTAAGAGTAGTCCA+TGG | 0.613248 | 8.1:+30521242 | None:intergenic |
| ACAAATATGTTGGTAAACTG+AGG | 0.614123 | 8.1:-30521944 | MS.gene76417:intron |
| TTAGAATTAAGTCTTGCACT+TGG | 0.614308 | 8.1:+30521750 | None:intergenic |
| TATGACAAAGTCGGTGCCTG+TGG | 0.616367 | 8.1:+30522001 | None:intergenic |
| TAAATGCTCTCTGGACAAGA+GGG | 0.617345 | 8.1:-30521668 | MS.gene76417:CDS |
| AGACTCCTCAGCAATGCGGA+AGG | 0.618284 | 8.1:-30522493 | MS.gene76417:CDS |
| TATTTGAGGTAACGATGTTG+GGG | 0.620267 | 8.1:+30521575 | None:intergenic |
| GCTTGTCAAACAGATTGCAA+AGG | 0.620286 | 8.1:+30521206 | None:intergenic |
| AACCTATTCAACAGGGACAG+TGG | 0.631854 | 8.1:-30522655 | MS.gene76417:CDS |
| TCTCACTCTCTTCAACCCTA+CGG | 0.632526 | 8.1:+30522597 | None:intergenic |
| GTGATCCTTCCGCATTGCTG+AGG | 0.633651 | 8.1:+30522488 | None:intergenic |
| GAGCTACCAGAACCGAGCCA+AGG | 0.641949 | 8.1:-30521474 | MS.gene76417:CDS |
| GCGGAAGAAACATTATGAGA+CGG | 0.646089 | 8.1:+30521318 | None:intergenic |
| TGGAAAAGATATATTCACCA+TGG | 0.647072 | 8.1:-30521259 | MS.gene76417:CDS |
| GCCCAAGGATATGACAAAGT+CGG | 0.650298 | 8.1:+30521992 | None:intergenic |
| AGGCTTGGAAGGCAGAGAGT+GGG | 0.650720 | 8.1:+30521226 | None:intergenic |
| CCAATTGAACCTATTCAACA+GGG | 0.658968 | 8.1:-30522662 | MS.gene76417:CDS |
| AGCCGCCAGAAAGATAAGAA+GGG | 0.660186 | 8.1:-30522024 | MS.gene76417:CDS |
| ATCTCAGCTATTCAGGAAGG+GGG | 0.669799 | 8.1:-30521609 | MS.gene76417:CDS |
| CACTGGATCGGATAATCACG+AGG | 0.678479 | 8.1:+30522338 | None:intergenic |
| TGAACTGCAGCGTCATGTGG+AGG | 0.688082 | 8.1:+30521786 | None:intergenic |
| GATTACCCTTTCTTGCTCAG+CGG | 0.690765 | 8.1:+30521299 | None:intergenic |
| ATGTCCAAAAGCAATTCAGG+AGG | 0.691534 | 8.1:+30522623 | None:intergenic |
| ATCAAGACTCCTCAGCAATG+CGG | 0.693306 | 8.1:-30522497 | MS.gene76417:CDS |
| CTTCGGTATGTAAATCATGG+AGG | 0.716243 | 8.1:-30522538 | MS.gene76417:CDS |
| GAATAGGTAGCATATCAAAG+CGG | 0.721866 | 8.1:-30522745 | MS.gene76417:CDS |
| ATAGGTAGCATATCAAAGCG+GGG | 0.729686 | 8.1:-30522743 | MS.gene76417:CDS |
| CAAACCTAAGTACAACACGA+AGG | 0.759578 | 8.1:+30522286 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGGATTATACTAAAAA+GGG | + | chr8.1:30521546-30521565 | None:intergenic | 15.0% |
| !! | ATACAAAATAGAAAAAATGT+CGG | + | chr8.1:30521844-30521863 | None:intergenic | 15.0% |
| !! | TAATTTGGATTATACTAAAA+AGG | + | chr8.1:30521547-30521566 | None:intergenic | 15.0% |
| !! | AGTATAATCCAAATTATTCT+TGG | - | chr8.1:30521551-30521570 | MS.gene76417:CDS | 20.0% |
| !! | ATTTGGATTATACTAAAAAG+GGG | + | chr8.1:30521545-30521564 | None:intergenic | 20.0% |
| !!! | CAACATGTTTTTTATACATT+TGG | - | chr8.1:30522115-30522134 | MS.gene76417:intron | 20.0% |
| ! | AAAAACATGTTGAGATTACA+AGG | + | chr8.1:30522107-30522126 | None:intergenic | 25.0% |
| ! | AAAACATGTTGAGATTACAA+GGG | + | chr8.1:30522106-30522125 | None:intergenic | 25.0% |
| ! | CTTAAAGATGATAACTTACA+TGG | + | chr8.1:30521713-30521732 | None:intergenic | 25.0% |
| ! | GAAATTCAACATTCATAATC+AGG | + | chr8.1:30521753-30521772 | None:intergenic | 25.0% |
| !! | AAGAAGCATAAAAAACCTAA+GGG | + | chr8.1:30521577-30521596 | None:intergenic | 25.0% |
| !! | CTTGATAATCTCTTTAGTAA+CGG | + | chr8.1:30521459-30521478 | None:intergenic | 25.0% |
| !! | TAAGAAGCATAAAAAACCTA+AGG | + | chr8.1:30521578-30521597 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTATACATTTGGC+AGG | - | chr8.1:30522119-30522138 | MS.gene76417:intron | 25.0% |
| AAACATGTTGAGATTACAAG+GGG | + | chr8.1:30522105-30522124 | None:intergenic | 30.0% | |
| AAAGGTTCACTGAATATTTG+AGG | + | chr8.1:30522412-30522431 | None:intergenic | 30.0% | |
| AGGATGAAAAGCTGATATAA+GGG | + | chr8.1:30522081-30522100 | None:intergenic | 30.0% | |
| ATCTTACAGTTTGGAAAGAT+TGG | - | chr8.1:30522691-30522710 | MS.gene76417:CDS | 30.0% | |
| ATTACCTGCTTCAATGAAAT+AGG | + | chr8.1:30521512-30521531 | None:intergenic | 30.0% | |
| ATTATGTCCAAAAGCAATTC+AGG | + | chr8.1:30521353-30521372 | None:intergenic | 30.0% | |
| ATTTATTGCGATTTAGACTG+TGG | - | chr8.1:30521805-30521824 | MS.gene76417:CDS | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | - | chr8.1:30521505-30521524 | MS.gene76417:CDS | 30.0% | |
| GTTGTCATATATAGCAAACT+TGG | + | chr8.1:30522161-30522180 | None:intergenic | 30.0% | |
| TACTTAAAAACAAGTCTCCT+AGG | - | chr8.1:30522536-30522555 | MS.gene76417:CDS | 30.0% | |
| TAGGATGAAAAGCTGATATA+AGG | + | chr8.1:30522082-30522101 | None:intergenic | 30.0% | |
| TGGAAAAGATATATTCACCA+TGG | - | chr8.1:30522711-30522730 | MS.gene76417:CDS | 30.0% | |
| TTAGAATTAAGTCTTGCACT+TGG | + | chr8.1:30522223-30522242 | None:intergenic | 30.0% | |
| ! | AATATTTGAGGTAACGATGT+TGG | + | chr8.1:30522400-30522419 | None:intergenic | 30.0% |
| ! | ACAAATATGTTGGTAAACTG+AGG | - | chr8.1:30522026-30522045 | MS.gene76417:CDS | 30.0% |
| ! | ATATTTGAGGTAACGATGTT+GGG | + | chr8.1:30522399-30522418 | None:intergenic | 30.0% |
| ! | ATTTGGCAGGTCTAATTTTT+GGG | - | chr8.1:30522132-30522151 | MS.gene76417:intron | 30.0% |
| ! | TTTACCAACATATTTGTTGC+TGG | + | chr8.1:30522023-30522042 | None:intergenic | 30.0% |
| !! | GCATTTAAGTGATCTTGTTT+TGG | - | chr8.1:30521876-30521895 | MS.gene76417:intron | 30.0% |
| !!! | AGACTTGTTTTTAAGTACCA+AGG | + | chr8.1:30522533-30522552 | None:intergenic | 30.0% |
| !!! | TGTTGTTGTTTTTTGTGCTT+CGG | - | chr8.1:30521415-30521434 | MS.gene76417:CDS | 30.0% |
| !!! | TTGTTTTGGTTTTGTCGTAA+CGG | - | chr8.1:30521890-30521909 | MS.gene76417:intron | 30.0% |
| AAGGGGATGAAAAATGGAAT+AGG | - | chr8.1:30521209-30521228 | MS.gene76417:CDS | 35.0% | |
| AATAGGTAGCATATCAAAGC+GGG | - | chr8.1:30521226-30521245 | MS.gene76417:CDS | 35.0% | |
| CCAATTGAACCTATTCAACA+GGG | - | chr8.1:30521308-30521327 | MS.gene76417:CDS | 35.0% | |
| GAAAGGGTAATCTTACAGTT+TGG | - | chr8.1:30522682-30522701 | MS.gene76417:CDS | 35.0% | |
| GAATAGGTAGCATATCAAAG+CGG | - | chr8.1:30521225-30521244 | MS.gene76417:CDS | 35.0% | |
| TATACCTATCTCAGCTATTC+AGG | - | chr8.1:30522354-30522373 | MS.gene76417:intron | 35.0% | |
| TCCAATTGAACCTATTCAAC+AGG | - | chr8.1:30521307-30521326 | MS.gene76417:CDS | 35.0% | |
| TGCAAGACTTAATTCTAAGC+AGG | - | chr8.1:30522225-30522244 | MS.gene76417:intron | 35.0% | |
| TTAAAAACAAGTCTCCTAGG+TGG | - | chr8.1:30522539-30522558 | MS.gene76417:CDS | 35.0% | |
| ! | AGCATTTAGCTCATAGGAAA+TGG | + | chr8.1:30522290-30522309 | None:intergenic | 35.0% |
| ! | CATTTGGCAGGTCTAATTTT+TGG | - | chr8.1:30522131-30522150 | MS.gene76417:intron | 35.0% |
| ! | TATTTGAGGTAACGATGTTG+GGG | + | chr8.1:30522398-30522417 | None:intergenic | 35.0% |
| ! | TTTGGCAGGTCTAATTTTTG+GGG | - | chr8.1:30522133-30522152 | MS.gene76417:intron | 35.0% |
| ACACCAAGAATTGGCTATGT+CGG | - | chr8.1:30521255-30521274 | MS.gene76417:CDS | 40.0% | |
| AGAAAAATCATCTGTGCCCA+AGG | + | chr8.1:30521996-30522015 | None:intergenic | 40.0% | |
| ATAGGTAGCATATCAAAGCG+GGG | - | chr8.1:30521227-30521246 | MS.gene76417:CDS | 40.0% | |
| ATGTCCAAAAGCAATTCAGG+AGG | + | chr8.1:30521350-30521369 | None:intergenic | 40.0% | |
| ATGTTGAGATTACAAGGGGT+AGG | + | chr8.1:30522101-30522120 | None:intergenic | 40.0% | |
| CAAACCTAAGTACAACACGA+AGG | + | chr8.1:30521687-30521706 | None:intergenic | 40.0% | |
| CCAAATTATTCTTGGCCCTT+AGG | - | chr8.1:30521559-30521578 | MS.gene76417:CDS | 40.0% | |
| CCAACAAGATTGTTACATGC+TGG | + | chr8.1:30522265-30522284 | None:intergenic | 40.0% | |
| CCAGCATGTAACAATCTTGT+TGG | - | chr8.1:30522262-30522281 | MS.gene76417:intron | 40.0% | |
| CCCTGTTGAATAGGTTCAAT+TGG | + | chr8.1:30521311-30521330 | None:intergenic | 40.0% | |
| CCTAAGGGCCAAGAATAATT+TGG | + | chr8.1:30521562-30521581 | None:intergenic | 40.0% | |
| CCTTATGTGTATGAATAGCC+CGG | - | chr8.1:30521608-30521627 | MS.gene76417:CDS | 40.0% | |
| CTATCTCAGCTATTCAGGAA+GGG | - | chr8.1:30522359-30522378 | MS.gene76417:intron | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | - | chr8.1:30521432-30521451 | MS.gene76417:CDS | 40.0% | |
| CTTCGTGTTGTACTTAGGTT+TGG | - | chr8.1:30521685-30521704 | MS.gene76417:CDS | 40.0% | |
| GAACTCAAGGGGATGAAAAA+TGG | - | chr8.1:30521203-30521222 | MS.gene76417:CDS | 40.0% | |
| GCGGAAGAAACATTATGAGA+CGG | + | chr8.1:30522655-30522674 | None:intergenic | 40.0% | |
| GCTTGTCAAACAGATTGCAA+AGG | + | chr8.1:30522767-30522786 | None:intergenic | 40.0% | |
| GGTTCAATTGGAGTTACATC+CGG | + | chr8.1:30521299-30521318 | None:intergenic | 40.0% | |
| GTGCTTCGGTATGTAAATCA+TGG | - | chr8.1:30521429-30521448 | MS.gene76417:CDS | 40.0% | |
| TAAATGCTCTCTGGACAAGA+GGG | - | chr8.1:30522302-30522321 | MS.gene76417:CDS | 40.0% | |
| TAACACGACCCATGAAGTTT+AGG | + | chr8.1:30522588-30522607 | None:intergenic | 40.0% | |
| TATCTCAGCTATTCAGGAAG+GGG | - | chr8.1:30522360-30522379 | MS.gene76417:intron | 40.0% | |
| TCAAACAGATTGCAAAGGCT+TGG | + | chr8.1:30522762-30522781 | None:intergenic | 40.0% | |
| TGTTCCTCCTAATAAAGCAC+TGG | + | chr8.1:30521652-30521671 | None:intergenic | 40.0% | |
| TTGAAGAGAGTGAGACATCT+TGG | - | chr8.1:30521381-30521400 | MS.gene76417:CDS | 40.0% | |
| TTGTTACATGCTGGAACTCT+TGG | + | chr8.1:30522256-30522275 | None:intergenic | 40.0% | |
| ! | ACCGACTTTGTCATATCCTT+GGG | - | chr8.1:30521977-30521996 | MS.gene76417:CDS | 40.0% |
| ! | ATCCGATCCAGTGCTTTATT+AGG | - | chr8.1:30521642-30521661 | MS.gene76417:CDS | 40.0% |
| ! | GCTTTTGGACATAATCCGTA+GGG | - | chr8.1:30521358-30521377 | MS.gene76417:CDS | 40.0% |
| ! | GTTTTGTCGTAACGGTATAG+CGG | - | chr8.1:30521898-30521917 | MS.gene76417:intron | 40.0% |
| ! | TCTACCTCCTGAATTGCTTT+TGG | - | chr8.1:30521343-30521362 | MS.gene76417:CDS | 40.0% |
| ! | TGCTTTTGGACATAATCCGT+AGG | - | chr8.1:30521357-30521376 | MS.gene76417:CDS | 40.0% |
| ! | TGGTAAACTGAGGCAAGTTT+TGG | - | chr8.1:30522036-30522055 | MS.gene76417:CDS | 40.0% |
| ! | TGTTGGTGCCTAAACTTCAT+GGG | - | chr8.1:30522577-30522596 | MS.gene76417:CDS | 40.0% |
| !! | CTCCTAATAAAGCACTGGAT+CGG | + | chr8.1:30521647-30521666 | None:intergenic | 40.0% |
| !!! | GGACTTTTTTCTTTCAGTGC+TGG | + | chr8.1:30522445-30522464 | None:intergenic | 40.0% |
| !!! | TTTTCTTTCAGTGCTGGTGA+GGG | + | chr8.1:30522439-30522458 | None:intergenic | 40.0% |
| !!! | TTTTTCTTTCAGTGCTGGTG+AGG | + | chr8.1:30522440-30522459 | None:intergenic | 40.0% |
| AAAACAACAACAGCACGAGC+AGG | + | chr8.1:30521407-30521426 | None:intergenic | 45.0% | |
| AACCTATTCAACAGGGACAG+TGG | - | chr8.1:30521315-30521334 | MS.gene76417:CDS | 45.0% | |
| ACAGATTGCAAAGGCTTGGA+AGG | + | chr8.1:30522758-30522777 | None:intergenic | 45.0% | |
| ACCTATTCAACAGGGACAGT+GGG | - | chr8.1:30521316-30521335 | MS.gene76417:CDS | 45.0% | |
| AGAAAGATAAGAAGGGCCAC+AGG | - | chr8.1:30521953-30521972 | MS.gene76417:CDS | 45.0% | |
| AGCCGCCAGAAAGATAAGAA+GGG | - | chr8.1:30521946-30521965 | MS.gene76417:CDS | 45.0% | |
| ATCAAGACTCCTCAGCAATG+CGG | - | chr8.1:30521473-30521492 | MS.gene76417:CDS | 45.0% | |
| ATCTCAGCTATTCAGGAAGG+GGG | - | chr8.1:30522361-30522380 | MS.gene76417:intron | 45.0% | |
| ATGATGCAGTGCACTCTTCT+TGG | + | chr8.1:30522328-30522347 | None:intergenic | 45.0% | |
| CCAATGACAGATTCGTACTC+TGG | - | chr8.1:30522463-30522482 | MS.gene76417:intron | 45.0% | |
| CCAGAGTACGAATCTGTCAT+TGG | + | chr8.1:30522466-30522485 | None:intergenic | 45.0% | |
| CCGGGCTATTCATACACATA+AGG | + | chr8.1:30521611-30521630 | None:intergenic | 45.0% | |
| CCTATCTCAGCTATTCAGGA+AGG | - | chr8.1:30522358-30522377 | MS.gene76417:intron | 45.0% | |
| CCTATGAGCTAAATGCTCTC+TGG | - | chr8.1:30522293-30522312 | MS.gene76417:CDS | 45.0% | |
| CCTTCCTGAATAGCTGAGAT+AGG | + | chr8.1:30522361-30522380 | None:intergenic | 45.0% | |
| CGAGCCAGCAACAAATATGT+TGG | - | chr8.1:30522016-30522035 | MS.gene76417:CDS | 45.0% | |
| CTAAATGCTCTCTGGACAAG+AGG | - | chr8.1:30522301-30522320 | MS.gene76417:CDS | 45.0% | |
| GATTACCCTTTCTTGCTCAG+CGG | + | chr8.1:30522674-30522693 | None:intergenic | 45.0% | |
| GCCCAAGGATATGACAAAGT+CGG | + | chr8.1:30521981-30522000 | None:intergenic | 45.0% | |
| GTCAAAGTCACATGTTGCTC+CGG | - | chr8.1:30521277-30521296 | MS.gene76417:CDS | 45.0% | |
| TAGCCGCCAGAAAGATAAGA+AGG | - | chr8.1:30521945-30521964 | MS.gene76417:CDS | 45.0% | |
| TCGACCTTCGTGTTGTACTT+AGG | - | chr8.1:30521680-30521699 | MS.gene76417:CDS | 45.0% | |
| TCTCACTCTCTTCAACCCTA+CGG | + | chr8.1:30521376-30521395 | None:intergenic | 45.0% | |
| TGAAGTTTAGGCACCAACAC+TGG | + | chr8.1:30522576-30522595 | None:intergenic | 45.0% | |
| TGACCGACATAGCCAATTCT+TGG | + | chr8.1:30521261-30521280 | None:intergenic | 45.0% | |
| TGTGGCCCTTCTTATCTTTC+TGG | + | chr8.1:30521954-30521973 | None:intergenic | 45.0% | |
| TTCTTCCGCTGAGCAAGAAA+GGG | - | chr8.1:30522666-30522685 | MS.gene76417:CDS | 45.0% | |
| TTTCTTCCGCTGAGCAAGAA+AGG | - | chr8.1:30522665-30522684 | MS.gene76417:CDS | 45.0% | |
| ! | CGATCCAGTGCTTTATTAGG+AGG | - | chr8.1:30521645-30521664 | MS.gene76417:CDS | 45.0% |
| ! | GTGTTGGTGCCTAAACTTCA+TGG | - | chr8.1:30522576-30522595 | MS.gene76417:CDS | 45.0% |
| ! | TTTTCATCCCCTTGAGTTCG+CGG | + | chr8.1:30521202-30521221 | None:intergenic | 45.0% |
| !! | CACCGACTTTGTCATATCCT+TGG | - | chr8.1:30521976-30521995 | MS.gene76417:CDS | 45.0% |
| !! | CCAGAGAGCATTTAGCTCAT+AGG | + | chr8.1:30522296-30522315 | None:intergenic | 45.0% |
| AAGCATAGTCCGCGAACTCA+AGG | - | chr8.1:30521190-30521209 | MS.gene76417:CDS | 50.0% | |
| AGCATAGTCCGCGAACTCAA+GGG | - | chr8.1:30521191-30521210 | MS.gene76417:CDS | 50.0% | |
| AGGTAACGATGTTGGGGTTG+GGG | + | chr8.1:30522392-30522411 | None:intergenic | 50.0% | |
| ATCGGATAATCACGAGGACC+GGG | + | chr8.1:30521629-30521648 | None:intergenic | 50.0% | |
| CACTGGATCGGATAATCACG+AGG | + | chr8.1:30521635-30521654 | None:intergenic | 50.0% | |
| CTTGCACTTGGTCGACGATT+AGG | + | chr8.1:30522211-30522230 | None:intergenic | 50.0% | |
| GAGGTAACGATGTTGGGGTT+GGG | + | chr8.1:30522393-30522412 | None:intergenic | 50.0% | |
| GAGTGGGTAAGAGTAGTCCA+TGG | + | chr8.1:30522731-30522750 | None:intergenic | 50.0% | |
| GATCGGATAATCACGAGGAC+CGG | + | chr8.1:30521630-30521649 | None:intergenic | 50.0% | |
| GGCCCTTCTTATCTTTCTGG+CGG | + | chr8.1:30521951-30521970 | None:intergenic | 50.0% | |
| TGAGGTAACGATGTTGGGGT+TGG | + | chr8.1:30522394-30522413 | None:intergenic | 50.0% | |
| ! | GGGGTTCTGACACCAAGAAT+TGG | - | chr8.1:30521246-30521265 | MS.gene76417:CDS | 50.0% |
| ! | TATGACAAAGTCGGTGCCTG+TGG | + | chr8.1:30521972-30521991 | None:intergenic | 50.0% |
| !! | TCGGTTCTGGTAGCTCTGAT+AGG | + | chr8.1:30522492-30522511 | None:intergenic | 50.0% |
| AAGGCTTGGAAGGCAGAGAG+TGG | + | chr8.1:30522748-30522767 | None:intergenic | 55.0% | |
| AGACTCCTCAGCAATGCGGA+AGG | - | chr8.1:30521477-30521496 | MS.gene76417:CDS | 55.0% | |
| AGGCTTGGAAGGCAGAGAGT+GGG | + | chr8.1:30522747-30522766 | None:intergenic | 55.0% | |
| GCATAGTCCGCGAACTCAAG+GGG | - | chr8.1:30521192-30521211 | MS.gene76417:CDS | 55.0% | |
| GCCCACTGTCCCTGTTGAAT+AGG | + | chr8.1:30521320-30521339 | None:intergenic | 55.0% | |
| GGTTGAACTGCAGCGTCATG+TGG | + | chr8.1:30522190-30522209 | None:intergenic | 55.0% | |
| GTGATCCTTCCGCATTGCTG+AGG | + | chr8.1:30521485-30521504 | None:intergenic | 55.0% | |
| TGAACTGCAGCGTCATGTGG+AGG | + | chr8.1:30522187-30522206 | None:intergenic | 55.0% | |
| !! | AGTGCTGGTGAGGGAGGAAA+AGG | + | chr8.1:30522430-30522449 | None:intergenic | 55.0% |
| !! | TCTTTCAGTGCTGGTGAGGG+AGG | + | chr8.1:30522436-30522455 | None:intergenic | 55.0% |
| AGAACCGAGCCAAGGCTCGA+TGG | - | chr8.1:30522504-30522523 | MS.gene76417:CDS | 60.0% | |
| CCAAGGAGTCCATCGAGCCT+TGG | + | chr8.1:30522516-30522535 | None:intergenic | 60.0% | |
| CTGCAGCGTCATGTGGAGGT+TGG | + | chr8.1:30522183-30522202 | None:intergenic | 60.0% | |
| GAGCTACCAGAACCGAGCCA+AGG | - | chr8.1:30522496-30522515 | MS.gene76417:CDS | 60.0% | |
| GAGTCCATCGAGCCTTGGCT+CGG | + | chr8.1:30522511-30522530 | None:intergenic | 60.0% | |
| GGCATGAGCAGCTCCAGTGT+TGG | - | chr8.1:30522560-30522579 | MS.gene76417:CDS | 60.0% | |
| TGGAGCTGCTCATGCCACCT+AGG | + | chr8.1:30522556-30522575 | None:intergenic | 60.0% | |
| ! | CCAAGGCTCGATGGACTCCT+TGG | - | chr8.1:30522513-30522532 | MS.gene76417:CDS | 60.0% |
| !! | ATCGAGCCTTGGCTCGGTTC+TGG | + | chr8.1:30522505-30522524 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 30521179 | 30522813 | 30521179 | ID=MS.gene76417 |
| chr8.1 | mRNA | 30521179 | 30522813 | 30521179 | ID=MS.gene76417.t1;Parent=MS.gene76417 |
| chr8.1 | exon | 30522466 | 30522813 | 30522466 | ID=MS.gene76417.t1.exon1;Parent=MS.gene76417.t1 |
| chr8.1 | CDS | 30522466 | 30522813 | 30522466 | ID=cds.MS.gene76417.t1;Parent=MS.gene76417.t1 |
| chr8.1 | exon | 30522279 | 30522366 | 30522279 | ID=MS.gene76417.t1.exon2;Parent=MS.gene76417.t1 |
| chr8.1 | CDS | 30522279 | 30522366 | 30522279 | ID=cds.MS.gene76417.t1;Parent=MS.gene76417.t1 |
| chr8.1 | exon | 30521945 | 30522074 | 30521945 | ID=MS.gene76417.t1.exon3;Parent=MS.gene76417.t1 |
| chr8.1 | CDS | 30521945 | 30522074 | 30521945 | ID=cds.MS.gene76417.t1;Parent=MS.gene76417.t1 |
| chr8.1 | exon | 30521179 | 30521851 | 30521179 | ID=MS.gene76417.t1.exon4;Parent=MS.gene76417.t1 |
| chr8.1 | CDS | 30521179 | 30521851 | 30521179 | ID=cds.MS.gene76417.t1;Parent=MS.gene76417.t1 |
| Gene Sequence |
| Protein sequence |
