Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76783.t1 | XP_013463738.1 | 99 | 296 | 3 | 0 | 1 | 296 | 1 | 296 | 5.10E-158 | 567 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76783.t1 | Q9SPE5 | 73.1 | 294 | 75 | 1 | 3 | 296 | 2 | 291 | 2.0e-118 | 426.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76783.t1 | B7FIS3 | 99.0 | 296 | 3 | 0 | 1 | 296 | 1 | 296 | 3.7e-158 | 567.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene76783 | MS.gene73141 | PPI |
MS.gene76783 | MS.gene064565 | PPI |
MS.gene76783 | MS.gene70948 | PPI |
MS.gene76783 | MS.gene035781 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76783.t1 | MTR_2g047110 | 98.986 | 296 | 3 | 0 | 1 | 296 | 1 | 296 | 0.0 | 599 |
MS.gene76783.t1 | MTR_2g047110 | 98.929 | 280 | 3 | 0 | 17 | 296 | 9 | 288 | 0.0 | 568 |
MS.gene76783.t1 | MTR_2g047110 | 99.142 | 233 | 2 | 0 | 64 | 296 | 1 | 233 | 2.68e-171 | 473 |
MS.gene76783.t1 | MTR_8g089250 | 75.000 | 296 | 74 | 0 | 1 | 296 | 1 | 296 | 1.24e-169 | 472 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76783.t1 | AT4G20410 | 73.129 | 294 | 75 | 1 | 3 | 296 | 2 | 291 | 3.54e-161 | 450 |
MS.gene76783.t1 | AT4G20410 | 73.665 | 281 | 70 | 1 | 16 | 296 | 21 | 297 | 1.54e-153 | 431 |
Find 59 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTTTCTCATATGCTATTT+TGG | 0.163583 | 2.4:+43764726 | None:intergenic |
TTTGGCTTTCTCATGGTTCC+TGG | 0.286035 | 2.4:+43764744 | None:intergenic |
CTTATTCTGGTGTAGCTAAT+GGG | 0.297613 | 2.4:-43764777 | MS.gene76783:intron |
AACATACAGTTTATCAGCTT+TGG | 0.316478 | 2.4:+43765461 | None:intergenic |
TAAATTATCTGCAGATCATT+AGG | 0.326738 | 2.4:-43760878 | MS.gene76783:intron |
CCAAACCTTGGACTGACTAT+TGG | 0.333636 | 2.4:+43762632 | None:intergenic |
TTTCCCTCTTTATAGTGCTT+TGG | 0.351992 | 2.4:-43763578 | MS.gene76783:intron |
TGCATCATCCCTGTTGAGAT+TGG | 0.381170 | 2.4:-43762682 | MS.gene76783:CDS |
CCGCCAAGCCCAATCTCAAC+AGG | 0.385743 | 2.4:+43762673 | None:intergenic |
CATGGAATCTGCCGCTGCTC+TGG | 0.386852 | 2.4:-43764519 | MS.gene76783:CDS |
GCATCATCCCTGTTGAGATT+GGG | 0.392208 | 2.4:-43762681 | MS.gene76783:CDS |
TATAACTGAATAGCTTCTTC+AGG | 0.395210 | 2.4:+43763544 | None:intergenic |
ATCCCTGTTGAGATTGGGCT+TGG | 0.408247 | 2.4:-43762676 | MS.gene76783:CDS |
GCTTTGGCTAACAGCTTGTT+GGG | 0.433583 | 2.4:+43765477 | None:intergenic |
GGCTAACAGCTTGTTGGGAT+CGG | 0.436492 | 2.4:+43765482 | None:intergenic |
TGGCTAAGGAACTGAGCAAC+TGG | 0.441808 | 2.4:-43764499 | MS.gene76783:CDS |
CACTCACTGCGTGGTCAAGA+TGG | 0.445217 | 2.4:+43761340 | None:intergenic |
CAGTGAATCTTCATCATCTT+CGG | 0.448770 | 2.4:+43760803 | None:intergenic |
AGCTTTGGCTAACAGCTTGT+TGG | 0.449192 | 2.4:+43765476 | None:intergenic |
TCACTAGGTGGAGTGCTGAT+TGG | 0.463091 | 2.4:-43765143 | MS.gene76783:CDS |
CAAGTTTCTTTCTGCTTACA+CGG | 0.466497 | 2.4:-43761412 | MS.gene76783:CDS |
ATCTGCCGCTGCTCTGGCTA+AGG | 0.488319 | 2.4:-43764513 | MS.gene76783:CDS |
TGACAAGTTAACCAGACCTT+GGG | 0.491717 | 2.4:-43764555 | MS.gene76783:intron |
CTTGCTAGGAAGCTTCCAAC+AGG | 0.492916 | 2.4:-43760855 | MS.gene76783:CDS |
TTTCTTTCTGCTTACACGGA+TGG | 0.495732 | 2.4:-43761408 | MS.gene76783:CDS |
GCATCTGATGCTCTTGCAAA+GGG | 0.496913 | 2.4:-43764410 | MS.gene76783:CDS |
GCTTAAAGTCGTGAGCATAA+AGG | 0.506521 | 2.4:+43762132 | None:intergenic |
AACGCACTCACGTCGCCTGT+TGG | 0.514361 | 2.4:+43760840 | None:intergenic |
TTTGCAAGAGCATCAGATGC+AGG | 0.516590 | 2.4:+43764413 | None:intergenic |
AATTCTTGAAGACGATGAAA+AGG | 0.517181 | 2.4:-43763506 | MS.gene76783:CDS |
CCTGTTGAGATTGGGCTTGG+CGG | 0.521320 | 2.4:-43762673 | MS.gene76783:CDS |
ACTCACTGCGTGGTCAAGAT+GGG | 0.521595 | 2.4:+43761341 | None:intergenic |
ATGCTCTTGCAAAGGGAGCC+CGG | 0.525968 | 2.4:-43764403 | MS.gene76783:intron |
AGAGCATCAGATGCAGGTTG+TGG | 0.531426 | 2.4:+43764419 | None:intergenic |
AGTTGCAGACTTCTATCAAA+AGG | 0.531863 | 2.4:-43764471 | MS.gene76783:CDS |
TGCAGATCATTAGGCTTGCT+AGG | 0.535430 | 2.4:-43760869 | MS.gene76783:intron |
CAGCTTGTTGGGATCGGAGG+AGG | 0.537392 | 2.4:+43765488 | None:intergenic |
TGCATCTGATGCTCTTGCAA+AGG | 0.538075 | 2.4:-43764411 | MS.gene76783:CDS |
CGAAGATGATGAAGATTCAC+TGG | 0.547559 | 2.4:-43760802 | MS.gene76783:CDS |
ACACTATTAGAGGTTAAGTC+AGG | 0.550198 | 2.4:+43760769 | None:intergenic |
GACGTGAGTGCGTTAAAGAC+TGG | 0.558424 | 2.4:-43760831 | MS.gene76783:CDS |
ACTGTTCTTTATGAACAAGC+TGG | 0.569775 | 2.4:-43765111 | MS.gene76783:intron |
CTGAATAGCTTCTTCAGGCA+TGG | 0.575199 | 2.4:+43763549 | None:intergenic |
ATGTGCTTAGCTGCATCCCA+AGG | 0.578977 | 2.4:+43764539 | None:intergenic |
ACTTGCTAGCACAACGATTG+TGG | 0.581103 | 2.4:+43761430 | None:intergenic |
GAACAAAACTCAGTCTCACT+AGG | 0.581117 | 2.4:-43765158 | MS.gene76783:CDS |
CAGTTCCTTAGCCAGAGCAG+CGG | 0.585551 | 2.4:+43764508 | None:intergenic |
TACAGCACGGTATAGATCAA+AGG | 0.594451 | 2.4:+43763474 | None:intergenic |
AAAGGCGTCTGAGTTGTACA+TGG | 0.599261 | 2.4:-43764453 | MS.gene76783:CDS |
TCTGAGTTGTACATGGAGTG+TGG | 0.603285 | 2.4:-43764446 | MS.gene76783:CDS |
TGCTACCAATAGTCAGTCCA+AGG | 0.603812 | 2.4:-43762637 | MS.gene76783:intron |
TAACAGCTTGTTGGGATCGG+AGG | 0.604581 | 2.4:+43765485 | None:intergenic |
CTGAGTTGTACATGGAGTGT+GGG | 0.611671 | 2.4:-43764445 | MS.gene76783:CDS |
TTGGGATGCAGCTAAGCACA+TGG | 0.614457 | 2.4:-43764537 | MS.gene76783:CDS |
CTAATGGGTTTAGAGCTGCC+AGG | 0.625134 | 2.4:-43764762 | MS.gene76783:CDS |
CGCCAAGCCCAATCTCAACA+GGG | 0.645427 | 2.4:+43762674 | None:intergenic |
TATAAACACTAGTTACAGCA+CGG | 0.660394 | 2.4:+43763461 | None:intergenic |
CAAAACTCAGTCTCACTAGG+TGG | 0.687722 | 2.4:-43765155 | MS.gene76783:CDS |
GCATATGAGAAAGCTTCACA+AGG | 0.693772 | 2.4:-43764718 | MS.gene76783:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAAATAATACTTTGAT+TGG | + | chr2.4:43765209-43765228 | None:intergenic | 10.0% |
!! | TAAATAGTAAATCTTAAATT+TGG | + | chr2.4:43764720-43764739 | None:intergenic | 10.0% |
!!! | ATTGAATATAAATTTTTACT+TGG | - | chr2.4:43762929-43762948 | MS.gene76783:intron | 10.0% |
!!! | CAAAGTATTATTTTTATTAA+TGG | - | chr2.4:43765211-43765230 | MS.gene76783:intron | 10.0% |
!!! | TTGAATATAAATTTTTACTT+GGG | - | chr2.4:43762930-43762949 | MS.gene76783:intron | 10.0% |
!! | AAAAATTAAATAATAGCCAA+AGG | + | chr2.4:43763755-43763774 | None:intergenic | 15.0% |
!! | CTTATATCAATAAAATTCAA+AGG | + | chr2.4:43761070-43761089 | None:intergenic | 15.0% |
!! | TTAAATATTGTAGTATAACA+TGG | - | chr2.4:43763027-43763046 | MS.gene76783:intron | 15.0% |
!!! | ACAGAATTTATTAGTTTTAT+TGG | - | chr2.4:43764445-43764464 | MS.gene76783:CDS | 15.0% |
!!! | ATTCATTATCTATATTTTTG+TGG | + | chr2.4:43764990-43765009 | None:intergenic | 15.0% |
!!! | GATTATTTTAGATTAGATAT+TGG | + | chr2.4:43763469-43763488 | None:intergenic | 15.0% |
!! | AAAAAAACGAAATTTATACG+AGG | + | chr2.4:43763122-43763141 | None:intergenic | 20.0% |
!! | AACACTTCCAAATTTATAAT+TGG | - | chr2.4:43763367-43763386 | MS.gene76783:intron | 20.0% |
!! | ACTATCAGTAAAATTTATGT+AGG | - | chr2.4:43764587-43764606 | MS.gene76783:intron | 20.0% |
!! | ATAATACTTTGATTGGATAT+AGG | + | chr2.4:43765202-43765221 | None:intergenic | 20.0% |
!! | GATCAAAATCAAAGAATATA+AGG | + | chr2.4:43761604-43761623 | None:intergenic | 20.0% |
!! | TAAATAGGATTATTGAACTA+TGG | - | chr2.4:43761035-43761054 | MS.gene76783:intron | 20.0% |
!! | TATCATTACTTGAAAATCAA+TGG | + | chr2.4:43763303-43763322 | None:intergenic | 20.0% |
!! | TGCAAAGAATATATGTAAAT+TGG | + | chr2.4:43762069-43762088 | None:intergenic | 20.0% |
!! | TGTAAAATAGTGAAAAAGAT+AGG | + | chr2.4:43762907-43762926 | None:intergenic | 20.0% |
!! | TTTCATTTCAGATATGATTA+GGG | - | chr2.4:43762275-43762294 | MS.gene76783:intron | 20.0% |
!!! | AAATTTTTGATCATACATTC+TGG | - | chr2.4:43764626-43764645 | MS.gene76783:intron | 20.0% |
!!! | AATTTTTGATCATACATTCT+GGG | - | chr2.4:43764627-43764646 | MS.gene76783:intron | 20.0% |
!!! | AGTATGTCTAAATTACATTT+TGG | - | chr2.4:43761441-43761460 | MS.gene76783:CDS | 20.0% |
!!! | ATACTTTTTTTGTCAATTAC+GGG | - | chr2.4:43765346-43765365 | MS.gene76783:intron | 20.0% |
!!! | ATGGCATTGAATAATTTAAA+TGG | + | chr2.4:43763248-43763267 | None:intergenic | 20.0% |
!!! | CTTATATGTTGTTTTTCTTT+TGG | - | chr2.4:43764963-43764982 | MS.gene76783:intron | 20.0% |
!!! | GATACTTTTTTTGTCAATTA+CGG | - | chr2.4:43765345-43765364 | MS.gene76783:intron | 20.0% |
!!! | TAAATAGTTAAGGGTATTAT+AGG | - | chr2.4:43764396-43764415 | MS.gene76783:intron | 20.0% |
!!! | TATTATGTTTTTCACTTGTA+TGG | - | chr2.4:43763867-43763886 | MS.gene76783:intron | 20.0% |
!!! | TCTCTAGAATAAATAGTTAA+GGG | + | chr2.4:43764355-43764374 | None:intergenic | 20.0% |
!!! | TTGATTTTCAAGTAATGATA+TGG | - | chr2.4:43763303-43763322 | MS.gene76783:intron | 20.0% |
!!! | TTTTCATTTCAGATATGATT+AGG | - | chr2.4:43762274-43762293 | MS.gene76783:intron | 20.0% |
! | AAAGTCTCTATATATTCTGT+TGG | - | chr2.4:43762960-43762979 | MS.gene76783:intron | 25.0% |
! | AACAAATTCGATTAAGCATA+TGG | + | chr2.4:43764753-43764772 | None:intergenic | 25.0% |
! | AAGTAATGATATGGTGATAA+AGG | - | chr2.4:43763312-43763331 | MS.gene76783:intron | 25.0% |
! | AATATGTTTCTTTCTCTGTT+TGG | - | chr2.4:43762340-43762359 | MS.gene76783:intron | 25.0% |
! | AATGGGATGATAAATAGTTA+AGG | - | chr2.4:43764386-43764405 | MS.gene76783:intron | 25.0% |
! | ACTTCCAAATTTATAATTGG+AGG | - | chr2.4:43763370-43763389 | MS.gene76783:intron | 25.0% |
! | AGGAAATACACAATTATGAT+TGG | + | chr2.4:43762379-43762398 | None:intergenic | 25.0% |
! | AGTTATAATATTCCAAACCT+TGG | + | chr2.4:43763657-43763676 | None:intergenic | 25.0% |
! | ATGGGATGATAAATAGTTAA+GGG | - | chr2.4:43764387-43764406 | MS.gene76783:intron | 25.0% |
! | GAACATGCATATAAACAATA+TGG | + | chr2.4:43763945-43763964 | None:intergenic | 25.0% |
! | GGAAATACACAATTATGATT+GGG | + | chr2.4:43762378-43762397 | None:intergenic | 25.0% |
! | GTAGTCAATGATTACAAAAA+AGG | - | chr2.4:43762454-43762473 | MS.gene76783:intron | 25.0% |
! | TAAATGGATATAAATGCTTG+TGG | - | chr2.4:43764788-43764807 | MS.gene76783:intron | 25.0% |
! | TAAATTATCTGCAGATCATT+AGG | - | chr2.4:43765396-43765415 | MS.gene76783:intron | 25.0% |
! | TAAGCCTCCAATTATAAATT+TGG | + | chr2.4:43763377-43763396 | None:intergenic | 25.0% |
! | TAGAGAATTACATTCACATT+AGG | + | chr2.4:43762642-43762661 | None:intergenic | 25.0% |
! | TATATGTAAATTGGTTACGA+TGG | + | chr2.4:43762060-43762079 | None:intergenic | 25.0% |
! | TATATTTATGGACTCAACTT+TGG | - | chr2.4:43765371-43765390 | MS.gene76783:intron | 25.0% |
! | TATGATAGCCAACTTAAAAT+AGG | - | chr2.4:43763214-43763233 | MS.gene76783:intron | 25.0% |
! | TTCTTATCATGAACTAATTC+AGG | - | chr2.4:43760997-43761016 | MS.gene76783:intron | 25.0% |
! | TTGAAATACCTTGTTAATAC+CGG | - | chr2.4:43765259-43765278 | MS.gene76783:intron | 25.0% |
!! | AAAAGAAACTCTGGTTATTT+TGG | + | chr2.4:43764654-43764673 | None:intergenic | 25.0% |
!! | AAGGTACTATGAAAAACATA+TGG | + | chr2.4:43762678-43762697 | None:intergenic | 25.0% |
!! | ATGTCTAAATTACATTTTGG+CGG | - | chr2.4:43761444-43761463 | MS.gene76783:CDS | 25.0% |
!! | ATTAACAAGGTATTTCAAGA+GGG | + | chr2.4:43765257-43765276 | None:intergenic | 25.0% |
!! | ATTTGCTAAATACTCTGAAA+GGG | - | chr2.4:43763710-43763729 | MS.gene76783:intron | 25.0% |
!! | CTGTTACTTGAAGTAATTTA+TGG | - | chr2.4:43761229-43761248 | MS.gene76783:intron | 25.0% |
!! | TATTAACAAGGTATTTCAAG+AGG | + | chr2.4:43765258-43765277 | None:intergenic | 25.0% |
!! | TTTGGGATAATCTTTGTATA+TGG | - | chr2.4:43762212-43762231 | MS.gene76783:intron | 25.0% |
!!! | ACAATCTTGATTTTGATCAT+AGG | - | chr2.4:43760923-43760942 | MS.gene76783:intron | 25.0% |
!!! | CTATATTTAGTTTGCTAACT+AGG | - | chr2.4:43763833-43763852 | MS.gene76783:intron | 25.0% |
!!! | CTCTCTAGAATAAATAGTTA+AGG | + | chr2.4:43764356-43764375 | None:intergenic | 25.0% |
!!! | TACTTTTTTTGTCAATTACG+GGG | - | chr2.4:43765347-43765366 | MS.gene76783:intron | 25.0% |
!!! | TTGTTTTTGTTTGTGTAAGT+TGG | - | chr2.4:43763492-43763511 | MS.gene76783:CDS | 25.0% |
AAATGTACACTGTCTTCTAT+AGG | + | chr2.4:43762858-43762877 | None:intergenic | 30.0% | |
AACATACAGTTTATCAGCTT+TGG | + | chr2.4:43760816-43760835 | None:intergenic | 30.0% | |
AATTCTTGAAGACGATGAAA+AGG | - | chr2.4:43762768-43762787 | MS.gene76783:intron | 30.0% | |
AGGGTAAACAATTCAATTAC+CGG | + | chr2.4:43761893-43761912 | None:intergenic | 30.0% | |
ATAGCCAACTTAAAATAGGA+TGG | - | chr2.4:43763218-43763237 | MS.gene76783:intron | 30.0% | |
ATATTCTATTAGAGTGAGAG+AGG | + | chr2.4:43762399-43762418 | None:intergenic | 30.0% | |
ATCAATGCATATATTGCATC+TGG | - | chr2.4:43762595-43762614 | MS.gene76783:intron | 30.0% | |
ATCTGCAGCATAAAATACAA+GGG | + | chr2.4:43762555-43762574 | None:intergenic | 30.0% | |
ATGTAGTTTATTGAGTCCTT+TGG | - | chr2.4:43762120-43762139 | MS.gene76783:CDS | 30.0% | |
ATTCTTTGCAAAAATCAAGC+AGG | - | chr2.4:43762079-43762098 | MS.gene76783:intron | 30.0% | |
CAATTACGGGGTTATATTTA+TGG | - | chr2.4:43765359-43765378 | MS.gene76783:intron | 30.0% | |
TAACCAAACAATCACAAATG+TGG | + | chr2.4:43763339-43763358 | None:intergenic | 30.0% | |
TACTCTGTTCCTTTAACTAT+CGG | - | chr2.4:43764273-43764292 | MS.gene76783:intron | 30.0% | |
TATAAACACTAGTTACAGCA+CGG | + | chr2.4:43762816-43762835 | None:intergenic | 30.0% | |
TATAACTGAATAGCTTCTTC+AGG | + | chr2.4:43762733-43762752 | None:intergenic | 30.0% | |
TCTAGTTGTATTCACATGTT+TGG | + | chr2.4:43763920-43763939 | None:intergenic | 30.0% | |
TGATTCGTTGGATTTCATAT+TGG | - | chr2.4:43762189-43762208 | MS.gene76783:intron | 30.0% | |
TGTAGTTTATTGAGTCCTTT+GGG | - | chr2.4:43762121-43762140 | MS.gene76783:CDS | 30.0% | |
TTGTAAAATAGAAGCTACAG+CGG | + | chr2.4:43761330-43761349 | None:intergenic | 30.0% | |
TTTAAGCAAACCGAGTTATA+CGG | + | chr2.4:43765175-43765194 | None:intergenic | 30.0% | |
! | ACAATAAGCACTTTGTTGTA+AGG | - | chr2.4:43763274-43763293 | MS.gene76783:intron | 30.0% |
! | AGAAATTCTTAGTCTTCCTT+TGG | - | chr2.4:43763736-43763755 | MS.gene76783:intron | 30.0% |
! | AGAAGACAGTGTACATTTTA+TGG | - | chr2.4:43762860-43762879 | MS.gene76783:intron | 30.0% |
! | ATGGTTTTCTATGTCGTTAA+TGG | - | chr2.4:43761670-43761689 | MS.gene76783:intron | 30.0% |
! | CAATAAGCACTTTGTTGTAA+GGG | - | chr2.4:43763275-43763294 | MS.gene76783:intron | 30.0% |
! | CATTTGCTAAATACTCTGAA+AGG | - | chr2.4:43763709-43763728 | MS.gene76783:intron | 30.0% |
! | CTTTCAGAGTATTTAGCAAA+TGG | + | chr2.4:43763711-43763730 | None:intergenic | 30.0% |
! | TTATTCTAGAGAGACATATG+TGG | - | chr2.4:43764363-43764382 | MS.gene76783:intron | 30.0% |
! | TTCTTAAATGAGTTGTTTCC+TGG | - | chr2.4:43763065-43763084 | MS.gene76783:intron | 30.0% |
!! | AGCTTTCTCATATGCTATTT+TGG | + | chr2.4:43761551-43761570 | None:intergenic | 30.0% |
!! | CTTTCCATCCTATTTTAAGT+TGG | + | chr2.4:43763225-43763244 | None:intergenic | 30.0% |
!! | GTTGGATTTCATATTGGTTT+GGG | - | chr2.4:43762195-43762214 | MS.gene76783:intron | 30.0% |
!! | TTACATTTTGGCGGTTATAT+TGG | - | chr2.4:43761453-43761472 | MS.gene76783:CDS | 30.0% |
!!! | AACCCAAATTTTTTACCTTG+CGG | - | chr2.4:43765100-43765119 | MS.gene76783:intron | 30.0% |
!!! | CTATGAATGCTATTTTGTCA+GGG | + | chr2.4:43764560-43764579 | None:intergenic | 30.0% |
AAAAGTGGAAGACCTGATAT+TGG | + | chr2.4:43765049-43765068 | None:intergenic | 35.0% | |
AAGTGCTTATTGTAGCTTCA+TGG | + | chr2.4:43763267-43763286 | None:intergenic | 35.0% | |
AATCTCGTAAAGTAGATTCC+AGG | + | chr2.4:43763086-43763105 | None:intergenic | 35.0% | |
AATTCAGCTGCAAAAACAAG+AGG | + | chr2.4:43761913-43761932 | None:intergenic | 35.0% | |
ACTGTTCTTTATGAACAAGC+TGG | - | chr2.4:43761163-43761182 | MS.gene76783:intron | 35.0% | |
AGACCGCAAGGTAAAAAATT+TGG | + | chr2.4:43765106-43765125 | None:intergenic | 35.0% | |
AGTTGCAGACTTCTATCAAA+AGG | - | chr2.4:43761803-43761822 | MS.gene76783:intron | 35.0% | |
ATACAACCAGCACTTATTGT+GGG | + | chr2.4:43763169-43763188 | None:intergenic | 35.0% | |
ATTCAGCTGCAAAAACAAGA+GGG | + | chr2.4:43761912-43761931 | None:intergenic | 35.0% | |
CAACATCAACATGTGATCTA+TGG | - | chr2.4:43764243-43764262 | MS.gene76783:intron | 35.0% | |
CAAGTTTCTTTCTGCTTACA+CGG | - | chr2.4:43764862-43764881 | MS.gene76783:intron | 35.0% | |
CAGTGAATCTTCATCATCTT+CGG | + | chr2.4:43765474-43765493 | None:intergenic | 35.0% | |
CATAGATCACATGTTGATGT+TGG | + | chr2.4:43764245-43764264 | None:intergenic | 35.0% | |
CATCTGCAGCATAAAATACA+AGG | + | chr2.4:43762556-43762575 | None:intergenic | 35.0% | |
CCTGACAAAATAGCATTCAT+AGG | - | chr2.4:43764558-43764577 | MS.gene76783:intron | 35.0% | |
CCTTGGATTCAATTTGTGAA+AGG | + | chr2.4:43763994-43764013 | None:intergenic | 35.0% | |
CCTTTCACAAATTGAATCCA+AGG | - | chr2.4:43763991-43764010 | MS.gene76783:intron | 35.0% | |
CTCTAGCTATAGAAACTTCT+CGG | - | chr2.4:43765013-43765032 | MS.gene76783:intron | 35.0% | |
CTGTAAAGAACAGCATAACA+AGG | + | chr2.4:43764213-43764232 | None:intergenic | 35.0% | |
CTTATTCTGGTGTAGCTAAT+GGG | - | chr2.4:43761497-43761516 | MS.gene76783:intron | 35.0% | |
GACCGCAAGGTAAAAAATTT+GGG | + | chr2.4:43765105-43765124 | None:intergenic | 35.0% | |
GGAAAACAAAGAAGCAAAGA+CGG | + | chr2.4:43764519-43764538 | None:intergenic | 35.0% | |
GGGTAAACAATTCAATTACC+GGG | + | chr2.4:43761892-43761911 | None:intergenic | 35.0% | |
GTAATCAGTGTTGTCAATTG+CGG | - | chr2.4:43761251-43761270 | MS.gene76783:intron | 35.0% | |
GTAGTTTATTGAGTCCTTTG+GGG | - | chr2.4:43762122-43762141 | MS.gene76783:CDS | 35.0% | |
GTCACTTGAATTGCTTTCAT+AGG | - | chr2.4:43762164-43762183 | MS.gene76783:intron | 35.0% | |
GTTACTACTGTATAATTCGC+AGG | + | chr2.4:43760900-43760919 | None:intergenic | 35.0% | |
TAAAGAACAGCATAACAAGG+AGG | + | chr2.4:43764210-43764229 | None:intergenic | 35.0% | |
TAGAGAGACATATGTGGAAT+GGG | - | chr2.4:43764369-43764388 | MS.gene76783:intron | 35.0% | |
TCTTATTCTGGTGTAGCTAA+TGG | - | chr2.4:43761496-43761515 | MS.gene76783:intron | 35.0% | |
TCTTTACTGTTTCAAGGGTT+AGG | - | chr2.4:43765123-43765142 | MS.gene76783:CDS | 35.0% | |
TGATTCTTGCACTCAAAAAG+TGG | + | chr2.4:43765064-43765083 | None:intergenic | 35.0% | |
TGTAACACAAACTTTAGCCT+TGG | + | chr2.4:43764011-43764030 | None:intergenic | 35.0% | |
TGTTTCTTTCTCTGTTTGGA+TGG | - | chr2.4:43762344-43762363 | MS.gene76783:intron | 35.0% | |
TTTATTCCCACAATAAGTGC+TGG | - | chr2.4:43763160-43763179 | MS.gene76783:intron | 35.0% | |
TTTCCCTCTTTATAGTGCTT+TGG | - | chr2.4:43762696-43762715 | MS.gene76783:CDS | 35.0% | |
! | AAAGCACTATAAAGAGGGAA+AGG | + | chr2.4:43762697-43762716 | None:intergenic | 35.0% |
! | CGTTGGATTTCATATTGGTT+TGG | - | chr2.4:43762194-43762213 | MS.gene76783:intron | 35.0% |
! | CTTCCAAAGCACTATAAAGA+GGG | + | chr2.4:43762702-43762721 | None:intergenic | 35.0% |
! | CTTTTCGACAAGCATACATT+TGG | - | chr2.4:43764669-43764688 | MS.gene76783:intron | 35.0% |
! | GTTGACTTACATACTTCCTT+GGG | - | chr2.4:43763540-43763559 | MS.gene76783:CDS | 35.0% |
! | TCTTCCAAAGCACTATAAAG+AGG | + | chr2.4:43762703-43762722 | None:intergenic | 35.0% |
!! | TGTTGACTTACATACTTCCT+TGG | - | chr2.4:43763539-43763558 | MS.gene76783:CDS | 35.0% |
!!! | ATGCTATTTTGGCTTTCTCA+TGG | + | chr2.4:43761540-43761559 | None:intergenic | 35.0% |
!!! | CCTATGAATGCTATTTTGTC+AGG | + | chr2.4:43764561-43764580 | None:intergenic | 35.0% |
AAGAAGCAAAGACGGTGTAA+AGG | + | chr2.4:43764511-43764530 | None:intergenic | 40.0% | |
AATTTGTGAAAGGACCACGT+TGG | + | chr2.4:43763984-43764003 | None:intergenic | 40.0% | |
ACAACGTGTACCCTTCATTA+CGG | + | chr2.4:43761649-43761668 | None:intergenic | 40.0% | |
ACTACTGTATAATTCGCAGG+TGG | + | chr2.4:43760897-43760916 | None:intergenic | 40.0% | |
AGAAGCAAAGACGGTGTAAA+GGG | + | chr2.4:43764510-43764529 | None:intergenic | 40.0% | |
ATAAGCCTGCATTCATGACA+AGG | + | chr2.4:43764102-43764121 | None:intergenic | 40.0% | |
ATAGCGACAATCTGACAACA+CGG | - | chr2.4:43761412-43761431 | MS.gene76783:CDS | 40.0% | |
ATGCATTGCTAGTCACTATC+CGG | + | chr2.4:43765281-43765300 | None:intergenic | 40.0% | |
CATACAACCAGCACTTATTG+TGG | + | chr2.4:43763170-43763189 | None:intergenic | 40.0% | |
CCTGCAAAACCGATAGTTAA+AGG | + | chr2.4:43764285-43764304 | None:intergenic | 40.0% | |
CGAAGATGATGAAGATTCAC+TGG | - | chr2.4:43765472-43765491 | MS.gene76783:CDS | 40.0% | |
CTAGAGAGACATATGTGGAA+TGG | - | chr2.4:43764368-43764387 | MS.gene76783:intron | 40.0% | |
CTTTCATAGGAGTGATTCGT+TGG | - | chr2.4:43762177-43762196 | MS.gene76783:intron | 40.0% | |
GAACAAAACTCAGTCTCACT+AGG | - | chr2.4:43761116-43761135 | MS.gene76783:intron | 40.0% | |
GATCACATGTTGATGTTGGT+TGG | + | chr2.4:43764241-43764260 | None:intergenic | 40.0% | |
GCATATGAGAAAGCTTCACA+AGG | - | chr2.4:43761556-43761575 | MS.gene76783:intron | 40.0% | |
GCTTAAAGTCGTGAGCATAA+AGG | + | chr2.4:43764145-43764164 | None:intergenic | 40.0% | |
GGACCACATTTGTGATTGTT+TGG | - | chr2.4:43763333-43763352 | MS.gene76783:intron | 40.0% | |
GTCACTATCCGGTATTAACA+AGG | + | chr2.4:43765270-43765289 | None:intergenic | 40.0% | |
GTTGTATTCACATGTTTGGC+TGG | + | chr2.4:43763916-43763935 | None:intergenic | 40.0% | |
TAAATGCTTGTGGTGTCTGT+AGG | - | chr2.4:43764798-43764817 | MS.gene76783:intron | 40.0% | |
TACAGCACGGTATAGATCAA+AGG | + | chr2.4:43762803-43762822 | None:intergenic | 40.0% | |
TATATGGCCATTTATCAGCG+CGG | - | chr2.4:43762228-43762247 | MS.gene76783:intron | 40.0% | |
TCAGTTTCTGCCGTAATGAA+GGG | - | chr2.4:43761636-43761655 | MS.gene76783:intron | 40.0% | |
TGACAAGTTAACCAGACCTT+GGG | - | chr2.4:43761719-43761738 | MS.gene76783:intron | 40.0% | |
TGCCATATGCTATCCTATCA+GGG | + | chr2.4:43762034-43762053 | None:intergenic | 40.0% | |
TGCGGTCTTTACTGTTTCAA+GGG | - | chr2.4:43765118-43765137 | MS.gene76783:CDS | 40.0% | |
TGCTTGTCGAAAAGAAACTC+TGG | + | chr2.4:43764663-43764682 | None:intergenic | 40.0% | |
TTCAGTTTCTGCCGTAATGA+AGG | - | chr2.4:43761635-43761654 | MS.gene76783:intron | 40.0% | |
TTGAAACAGTAAAGACCGCA+AGG | + | chr2.4:43765118-43765137 | None:intergenic | 40.0% | |
TTGACAAGTTAACCAGACCT+TGG | - | chr2.4:43761718-43761737 | MS.gene76783:intron | 40.0% | |
TTGCAAAAATCAAGCAGGCT+AGG | - | chr2.4:43762084-43762103 | MS.gene76783:intron | 40.0% | |
TTGCCATATGCTATCCTATC+AGG | + | chr2.4:43762035-43762054 | None:intergenic | 40.0% | |
TTGCGGTCTTTACTGTTTCA+AGG | - | chr2.4:43765117-43765136 | MS.gene76783:CDS | 40.0% | |
TTGTCAGGGCAAGAAGAAAA+TGG | + | chr2.4:43764546-43764565 | None:intergenic | 40.0% | |
TTTCTTTCTGCTTACACGGA+TGG | - | chr2.4:43764866-43764885 | MS.gene76783:intron | 40.0% | |
!! | AAGGTCTGGTTAACTTGTCA+AGG | + | chr2.4:43761719-43761738 | None:intergenic | 40.0% |
!! | ATTGAGTCCTTTGGGGTATT+TGG | - | chr2.4:43762129-43762148 | MS.gene76783:CDS | 40.0% |
!!! | CCTTTAACTATCGGTTTTGC+AGG | - | chr2.4:43764282-43764301 | MS.gene76783:intron | 40.0% |
AAGACGGTGTAAAGGGTCAA+CGG | + | chr2.4:43764503-43764522 | None:intergenic | 45.0% | |
AAGCTAAATCACTCACTGCG+TGG | + | chr2.4:43764946-43764965 | None:intergenic | 45.0% | |
ACACACCTTGTCATGAATGC+AGG | - | chr2.4:43764094-43764113 | MS.gene76783:intron | 45.0% | |
ACCACATCATTGTAGCGTAG+CGG | + | chr2.4:43761306-43761325 | None:intergenic | 45.0% | |
CAAAACTCAGTCTCACTAGG+TGG | - | chr2.4:43761119-43761138 | MS.gene76783:intron | 45.0% | |
CATAGTGTGAATGCCCTGAT+AGG | - | chr2.4:43762018-43762037 | MS.gene76783:intron | 45.0% | |
CATCACGTTGCCGTATAACT+CGG | - | chr2.4:43765162-43765181 | MS.gene76783:intron | 45.0% | |
CCAAACCTTGGACTGACTAT+TGG | + | chr2.4:43763645-43763664 | None:intergenic | 45.0% | |
CCAATAGTCAGTCCAAGGTT+TGG | - | chr2.4:43763642-43763661 | MS.gene76783:intron | 45.0% | |
CTGAATAGCTTCTTCAGGCA+TGG | + | chr2.4:43762728-43762747 | None:intergenic | 45.0% | |
CTGACGAGCTCTTCTTATTC+TGG | - | chr2.4:43761484-43761503 | MS.gene76783:intron | 45.0% | |
CTGAGTTGTACATGGAGTGT+GGG | - | chr2.4:43761829-43761848 | MS.gene76783:intron | 45.0% | |
CTTACATACTTCCTTGGGCA+TGG | - | chr2.4:43763545-43763564 | MS.gene76783:CDS | 45.0% | |
GCATCATCCCTGTTGAGATT+GGG | - | chr2.4:43763593-43763612 | MS.gene76783:intron | 45.0% | |
GCATCTGATGCTCTTGCAAA+GGG | - | chr2.4:43761864-43761883 | MS.gene76783:intron | 45.0% | |
GGGCAAGAAGAAAATGGAGT+TGG | + | chr2.4:43764540-43764559 | None:intergenic | 45.0% | |
GTGCTCATGAGTGGTTCAAA+CGG | - | chr2.4:43762250-43762269 | MS.gene76783:intron | 45.0% | |
TAATTCGCAGGTGGAATCTG+AGG | + | chr2.4:43760888-43760907 | None:intergenic | 45.0% | |
TACCGTACCAAATACCCCAA+AGG | + | chr2.4:43762139-43762158 | None:intergenic | 45.0% | |
TAGCGACAATCTGACAACAC+GGG | - | chr2.4:43761413-43761432 | MS.gene76783:CDS | 45.0% | |
TCTGAGTTGTACATGGAGTG+TGG | - | chr2.4:43761828-43761847 | MS.gene76783:intron | 45.0% | |
TGCATCATCCCTGTTGAGAT+TGG | - | chr2.4:43763592-43763611 | MS.gene76783:intron | 45.0% | |
TGCATCTGATGCTCTTGCAA+AGG | - | chr2.4:43761863-43761882 | MS.gene76783:intron | 45.0% | |
TGCCCTGATAGGATAGCATA+TGG | - | chr2.4:43762029-43762048 | MS.gene76783:intron | 45.0% | |
TGCTACCAATAGTCAGTCCA+AGG | - | chr2.4:43763637-43763656 | MS.gene76783:intron | 45.0% | |
! | ACTTGCTAGCACAACGATTG+TGG | + | chr2.4:43764847-43764866 | None:intergenic | 45.0% |
! | AGCTTTGGCTAACAGCTTGT+TGG | + | chr2.4:43760801-43760820 | None:intergenic | 45.0% |
! | ATGAAGGGTACACGTTGTCA+TGG | - | chr2.4:43761651-43761670 | MS.gene76783:intron | 45.0% |
! | GCTTTGGCTAACAGCTTGTT+GGG | + | chr2.4:43760800-43760819 | None:intergenic | 45.0% |
! | GTATTTCAAGAGGGAGCACA+GGG | + | chr2.4:43765248-43765267 | None:intergenic | 45.0% |
! | TGCAGATCATTAGGCTTGCT+AGG | - | chr2.4:43765405-43765424 | MS.gene76783:intron | 45.0% |
!! | AAAGGCGTCTGAGTTGTACA+TGG | - | chr2.4:43761821-43761840 | MS.gene76783:intron | 45.0% |
!! | GTCCTTTGGGGTATTTGGTA+CGG | - | chr2.4:43762134-43762153 | MS.gene76783:CDS | 45.0% |
!! | TTTGCAAGAGCATCAGATGC+AGG | + | chr2.4:43761864-43761883 | None:intergenic | 45.0% |
!! | TTTGGCTTTCTCATGGTTCC+TGG | + | chr2.4:43761533-43761552 | None:intergenic | 45.0% |
!!! | TTTTATTATTTATTCTAAAT+AGG | - | chr2.4:43761020-43761039 | MS.gene76783:intron | 5.0% |
ACTCACTGCGTGGTCAAGAT+GGG | + | chr2.4:43764936-43764955 | None:intergenic | 50.0% | |
ATCCCTGTTGAGATTGGGCT+TGG | - | chr2.4:43763598-43763617 | MS.gene76783:intron | 50.0% | |
ATGTGCTTAGCTGCATCCCA+AGG | + | chr2.4:43761738-43761757 | None:intergenic | 50.0% | |
CTTGCTAGGAAGCTTCCAAC+AGG | - | chr2.4:43765419-43765438 | MS.gene76783:intron | 50.0% | |
GACGTGAGTGCGTTAAAGAC+TGG | - | chr2.4:43765443-43765462 | MS.gene76783:intron | 50.0% | |
GGCTGCTTGTCACCAATATC+AGG | - | chr2.4:43765034-43765053 | MS.gene76783:intron | 50.0% | |
TCCGCTACGCTACAATGATG+TGG | - | chr2.4:43761302-43761321 | MS.gene76783:intron | 50.0% | |
TGGCTAAGGAACTGAGCAAC+TGG | - | chr2.4:43761775-43761794 | MS.gene76783:intron | 50.0% | |
TGTGCATCAAACCATGCCCA+AGG | + | chr2.4:43763559-43763578 | None:intergenic | 50.0% | |
TGTGTTTAACCGCTCCAACG+TGG | - | chr2.4:43763967-43763986 | MS.gene76783:intron | 50.0% | |
TTGGGATGCAGCTAAGCACA+TGG | - | chr2.4:43761737-43761756 | MS.gene76783:intron | 50.0% | |
! | AGAGCATCAGATGCAGGTTG+TGG | + | chr2.4:43761858-43761877 | None:intergenic | 50.0% |
! | ATGAGCACCGCGCTGATAAA+TGG | + | chr2.4:43762238-43762257 | None:intergenic | 50.0% |
! | GGTATTTCAAGAGGGAGCAC+AGG | + | chr2.4:43765249-43765268 | None:intergenic | 50.0% |
! | TTGCGGATTGCGTGCAATAG+TGG | - | chr2.4:43761268-43761287 | MS.gene76783:intron | 50.0% |
!! | CTAATGGGTTTAGAGCTGCC+AGG | - | chr2.4:43761512-43761531 | MS.gene76783:intron | 50.0% |
!! | GGCTAACAGCTTGTTGGGAT+CGG | + | chr2.4:43760795-43760814 | None:intergenic | 50.0% |
!! | TAACAGCTTGTTGGGATCGG+AGG | + | chr2.4:43760792-43760811 | None:intergenic | 50.0% |
!! | TCACTAGGTGGAGTGCTGAT+TGG | - | chr2.4:43761131-43761150 | MS.gene76783:intron | 50.0% |
ATGCTCTTGCAAAGGGAGCC+CGG | - | chr2.4:43761871-43761890 | MS.gene76783:intron | 55.0% | |
CACTCACTGCGTGGTCAAGA+TGG | + | chr2.4:43764937-43764956 | None:intergenic | 55.0% | |
CAGTTCCTTAGCCAGAGCAG+CGG | + | chr2.4:43761769-43761788 | None:intergenic | 55.0% | |
CCTGTTGAGATTGGGCTTGG+CGG | - | chr2.4:43763601-43763620 | MS.gene76783:intron | 55.0% | |
CGACAATCTGACAACACGGG+TGG | - | chr2.4:43761416-43761435 | MS.gene76783:CDS | 55.0% | |
CGCCAAGCCCAATCTCAACA+GGG | + | chr2.4:43763603-43763622 | None:intergenic | 55.0% | |
CTTAGCTGCATCCCAAGGTC+TGG | + | chr2.4:43761733-43761752 | None:intergenic | 55.0% | |
GTGAAAGGACCACGTTGGAG+CGG | + | chr2.4:43763979-43763998 | None:intergenic | 55.0% | |
! | GAGGGAGCACAGGGTTTGTT+TGG | + | chr2.4:43765239-43765258 | None:intergenic | 55.0% |
AACGCACTCACGTCGCCTGT+TGG | + | chr2.4:43765437-43765456 | None:intergenic | 60.0% | |
ATCAGCGCGGTGCTCATGAG+TGG | - | chr2.4:43762241-43762260 | MS.gene76783:intron | 60.0% | |
ATCTGCCGCTGCTCTGGCTA+AGG | - | chr2.4:43761761-43761780 | MS.gene76783:intron | 60.0% | |
CATGGAATCTGCCGCTGCTC+TGG | - | chr2.4:43761755-43761774 | MS.gene76783:intron | 60.0% | |
CCGCCAAGCCCAATCTCAAC+AGG | + | chr2.4:43763604-43763623 | None:intergenic | 60.0% | |
!! | CAGCTTGTTGGGATCGGAGG+AGG | + | chr2.4:43760789-43760808 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 43760782 | 43765514 | 43760782 | ID=MS.gene76783 |
chr2.4 | mRNA | 43760782 | 43765514 | 43760782 | ID=MS.gene76783.t1;Parent=MS.gene76783 |
chr2.4 | exon | 43765468 | 43765514 | 43765468 | ID=MS.gene76783.t1.exon1;Parent=MS.gene76783.t1 |
chr2.4 | CDS | 43765468 | 43765514 | 43765468 | ID=cds.MS.gene76783.t1;Parent=MS.gene76783.t1 |
chr2.4 | exon | 43765112 | 43765179 | 43765112 | ID=MS.gene76783.t1.exon2;Parent=MS.gene76783.t1 |
chr2.4 | CDS | 43765112 | 43765179 | 43765112 | ID=cds.MS.gene76783.t1;Parent=MS.gene76783.t1 |
chr2.4 | exon | 43764700 | 43764784 | 43764700 | ID=MS.gene76783.t1.exon3;Parent=MS.gene76783.t1 |
chr2.4 | CDS | 43764700 | 43764784 | 43764700 | ID=cds.MS.gene76783.t1;Parent=MS.gene76783.t1 |
chr2.4 | exon | 43764404 | 43764562 | 43764404 | ID=MS.gene76783.t1.exon4;Parent=MS.gene76783.t1 |
chr2.4 | CDS | 43764404 | 43764562 | 43764404 | ID=cds.MS.gene76783.t1;Parent=MS.gene76783.t1 |
chr2.4 | exon | 43763448 | 43763585 | 43763448 | ID=MS.gene76783.t1.exon5;Parent=MS.gene76783.t1 |
chr2.4 | CDS | 43763448 | 43763585 | 43763448 | ID=cds.MS.gene76783.t1;Parent=MS.gene76783.t1 |
chr2.4 | exon | 43762638 | 43762716 | 43762638 | ID=MS.gene76783.t1.exon6;Parent=MS.gene76783.t1 |
chr2.4 | CDS | 43762638 | 43762716 | 43762638 | ID=cds.MS.gene76783.t1;Parent=MS.gene76783.t1 |
chr2.4 | exon | 43762101 | 43762180 | 43762101 | ID=MS.gene76783.t1.exon7;Parent=MS.gene76783.t1 |
chr2.4 | CDS | 43762101 | 43762180 | 43762101 | ID=cds.MS.gene76783.t1;Parent=MS.gene76783.t1 |
chr2.4 | exon | 43761347 | 43761476 | 43761347 | ID=MS.gene76783.t1.exon8;Parent=MS.gene76783.t1 |
chr2.4 | CDS | 43761347 | 43761476 | 43761347 | ID=cds.MS.gene76783.t1;Parent=MS.gene76783.t1 |
chr2.4 | exon | 43760782 | 43760886 | 43760782 | ID=MS.gene76783.t1.exon9;Parent=MS.gene76783.t1 |
chr2.4 | CDS | 43760782 | 43760886 | 43760782 | ID=cds.MS.gene76783.t1;Parent=MS.gene76783.t1 |
Gene Sequence |
Protein sequence |