Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76849.t1 | XP_013470031.1 | 99.5 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 3.50E-212 | 747.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76849.t1 | Q9C6D2 | 77.7 | 364 | 79 | 1 | 3 | 364 | 2 | 365 | 5.7e-171 | 601.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76849.t1 | A0A072VPX2 | 99.5 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 2.5e-212 | 747.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049801 | MS.gene76849 | 0.804032 | 2.62E-49 | -1.69E-46 |
| MS.gene053575 | MS.gene76849 | 0.804702 | 1.90E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene76849 | 0.815024 | 1.14E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene76849 | 0.805147 | 1.54E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene76849 | 0.818009 | 2.45E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene76849 | 0.808749 | 2.66E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene76849 | 0.834432 | 3.01E-56 | -1.69E-46 |
| MS.gene060918 | MS.gene76849 | 0.800476 | 1.42E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76849.t1 | MTR_1g107235 | 99.451 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 0.0 | 758 |
| MS.gene76849.t1 | MTR_1g107235 | 95.779 | 308 | 7 | 2 | 1 | 302 | 1 | 308 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76849.t1 | AT1G49820 | 77.747 | 364 | 79 | 1 | 3 | 364 | 2 | 365 | 0.0 | 610 |
Find 70 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAAGTGCAGTGAATTTA+TGG | 0.184173 | 1.1:+76842242 | None:intergenic |
| ATTCCTAGGAAATTTGATTT+TGG | 0.220071 | 1.1:-76843373 | MS.gene76849:CDS |
| AAAGAGACACCTTATCATTT+TGG | 0.222077 | 1.1:+76842093 | None:intergenic |
| TTTGATTGGTATGCGTTATT+TGG | 0.235748 | 1.1:-76845128 | MS.gene76849:CDS |
| CTGTGTTATGCAGGCATATA+AGG | 0.263644 | 1.1:-76842308 | MS.gene76849:intron |
| TTATACTCAGAAACTTTATA+TGG | 0.271029 | 1.1:+76843715 | None:intergenic |
| CTCAGAAAAGGTTTGATTGC+TGG | 0.288772 | 1.1:-76845088 | MS.gene76849:CDS |
| CCATAAATTCACTGCACTTT+GGG | 0.304944 | 1.1:-76842242 | MS.gene76849:CDS |
| GGAGAAATTGTTGTCGAGTT+TGG | 0.308716 | 1.1:+76845463 | None:intergenic |
| AAACGATGAAGACGAAATTA+AGG | 0.335482 | 1.1:+76845408 | None:intergenic |
| TATGCTCTTTCTTTCGTCAT+TGG | 0.340213 | 1.1:+76845235 | None:intergenic |
| GTTCTACCACGGAGCATAAA+CGG | 0.342649 | 1.1:-76844988 | MS.gene76849:CDS |
| GGTCCATAAAATGCAAATTC+AGG | 0.347893 | 1.1:+76843417 | None:intergenic |
| TTTCATGACAGTCTCGGATT+TGG | 0.351720 | 1.1:-76842121 | MS.gene76849:CDS |
| CCGTGATGCTGAGGCTGTTC+GGG | 0.363989 | 1.1:-76843668 | MS.gene76849:CDS |
| GATCGTACTATGTCTTTGAT+TGG | 0.376412 | 1.1:-76845142 | MS.gene76849:CDS |
| TCAGGATTGTTATAGATTCC+TGG | 0.385724 | 1.1:+76842184 | None:intergenic |
| ACCGTGATGCTGAGGCTGTT+CGG | 0.390427 | 1.1:-76843669 | MS.gene76849:CDS |
| TTCTACCACGGAGCATAAAC+GGG | 0.401435 | 1.1:-76844987 | MS.gene76849:CDS |
| GCTGGTGAGGCATATCTTCC+AGG | 0.401989 | 1.1:-76842202 | MS.gene76849:CDS |
| ACCATAAATTCACTGCACTT+TGG | 0.416058 | 1.1:-76842243 | MS.gene76849:CDS |
| TGGTGTTGAGTATCCTTTGT+TGG | 0.418687 | 1.1:-76845068 | MS.gene76849:CDS |
| TTCATTTAGGTTCTGTGAGA+GGG | 0.429000 | 1.1:-76843514 | MS.gene76849:intron |
| CGATCAAAATGATAGACTTC+AGG | 0.437577 | 1.1:+76845160 | None:intergenic |
| TCTCCTATGCAACGAACATA+TGG | 0.446044 | 1.1:+76845265 | None:intergenic |
| GCCATCTCCGACTTCTTTGA+CGG | 0.448574 | 1.1:+76845433 | None:intergenic |
| TGTACAAGTAGTTGAACATC+AGG | 0.451446 | 1.1:+76842166 | None:intergenic |
| TTAAGACAATTGCAGACACT+TGG | 0.472640 | 1.1:-76842276 | MS.gene76849:CDS |
| GCGGGAATGTGGAGTTATGC+AGG | 0.477746 | 1.1:-76843765 | MS.gene76849:CDS |
| TTTGATATCGGAGCATTCCT+AGG | 0.479894 | 1.1:-76843387 | MS.gene76849:CDS |
| TTGCCATATGTTCGTTGCAT+AGG | 0.482313 | 1.1:-76845268 | MS.gene76849:CDS |
| TATACTCAGAAACTTTATAT+GGG | 0.482549 | 1.1:+76843716 | None:intergenic |
| AAGCCAAAATCAAATTTCCT+AGG | 0.485089 | 1.1:+76843370 | None:intergenic |
| CCACATATAATTCTCAGAAA+AGG | 0.497279 | 1.1:-76845100 | MS.gene76849:CDS |
| TAGGTTCTGTGAGAGGGCTC+AGG | 0.499778 | 1.1:-76843508 | MS.gene76849:CDS |
| GTTCATTTAGGTTCTGTGAG+AGG | 0.506829 | 1.1:-76843515 | MS.gene76849:intron |
| GACTTCTTTGACGGATAAGT+CGG | 0.509303 | 1.1:+76845442 | None:intergenic |
| GTTATGCAGGCTCACTGAGC+AGG | 0.511628 | 1.1:-76843752 | MS.gene76849:CDS |
| TCGAGTTTGGATGAAAGTGC+AGG | 0.512775 | 1.1:+76845476 | None:intergenic |
| TTTGGATGAAAGTGCAGGGA+TGG | 0.516292 | 1.1:+76845481 | None:intergenic |
| TAGACTTCAGGAACATGATC+AGG | 0.522053 | 1.1:+76845172 | None:intergenic |
| TTGGCGCTGCCAAAATGATA+AGG | 0.541695 | 1.1:-76842102 | MS.gene76849:CDS |
| GATTTATTTCATGACAGTCT+CGG | 0.544205 | 1.1:-76842127 | MS.gene76849:CDS |
| GTTTATGCTCCGTGGTAGAA+CGG | 0.550540 | 1.1:+76844990 | None:intergenic |
| TTTCTGAGAATTATATGTGG+TGG | 0.552320 | 1.1:+76845103 | None:intergenic |
| CAGCATCACGGTCAAGATGA+GGG | 0.555661 | 1.1:+76843680 | None:intergenic |
| TTATGCAGGCATATAAGGAA+TGG | 0.565476 | 1.1:-76842303 | MS.gene76849:intron |
| TTCGTTGCATAGGAGAATCA+TGG | 0.568476 | 1.1:-76845258 | MS.gene76849:CDS |
| AAGTTTCTGAGTATAATCGC+TGG | 0.568636 | 1.1:-76843708 | MS.gene76849:CDS |
| GACAAAAGAACCGTTGGTGT+TGG | 0.569843 | 1.1:+76845385 | None:intergenic |
| GACTTATCCGTCAAAGAAGT+CGG | 0.577212 | 1.1:-76845440 | MS.gene76849:CDS |
| GTCATTGGCGTTGAAAGAAG+AGG | 0.581400 | 1.1:-76845206 | MS.gene76849:CDS |
| TCCGTCAAAGAAGTCGGAGA+TGG | 0.584966 | 1.1:-76845434 | MS.gene76849:CDS |
| TCAGCATCACGGTCAAGATG+AGG | 0.591643 | 1.1:+76843679 | None:intergenic |
| TCATCTTGACCGTGATGCTG+AGG | 0.597607 | 1.1:-76843677 | MS.gene76849:CDS |
| TTCATCGTTTCCAACACCAA+CGG | 0.620059 | 1.1:-76845395 | MS.gene76849:CDS |
| ACCATCCCGTTTATGCTCCG+TGG | 0.623685 | 1.1:+76844982 | None:intergenic |
| CCCGAACAGCCTCAGCATCA+CGG | 0.629555 | 1.1:+76843668 | None:intergenic |
| GCTCCGATATCAAAACCCAT+TGG | 0.631526 | 1.1:+76843396 | None:intergenic |
| AGCATCACGGTCAAGATGAG+GGG | 0.631550 | 1.1:+76843681 | None:intergenic |
| CGAGTTTGGATGAAAGTGCA+GGG | 0.636609 | 1.1:+76845477 | None:intergenic |
| TCATTGGCGTTGAAAGAAGA+GGG | 0.636857 | 1.1:-76845205 | MS.gene76849:CDS |
| TCTACACACTGGTTCTGTGA+TGG | 0.638431 | 1.1:-76843469 | MS.gene76849:CDS |
| TCTGCTTTACCGTTCTACCA+CGG | 0.645741 | 1.1:-76844999 | MS.gene76849:CDS |
| ACCACGGAGCATAAACGGGA+TGG | 0.648135 | 1.1:-76844983 | MS.gene76849:intron |
| TTTGATGACAAAAGAACCGT+TGG | 0.648397 | 1.1:+76845379 | None:intergenic |
| AGGGCTCAGGCACTAATACA+CGG | 0.649727 | 1.1:-76843495 | MS.gene76849:CDS |
| GACATGTGATCAGCCAACAA+AGG | 0.649738 | 1.1:+76845055 | None:intergenic |
| AAAGTGCAGTGAATTTATGG+TGG | 0.659695 | 1.1:+76842245 | None:intergenic |
| ATACACGGAGATCTACACAC+TGG | 0.737182 | 1.1:-76843480 | MS.gene76849:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTCTATTTTTAATAA+TGG | - | chr1.1:76842294-76842313 | MS.gene76849:CDS | 10.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr1.1:76842854-76842873 | None:intergenic | 15.0% |
| !! | AAGAATATTAATCGTTTATA+AGG | + | chr1.1:76843498-76843517 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr1.1:76842853-76842872 | MS.gene76849:intron | 15.0% |
| !! | ATGAAAATTTATGTTCATTT+AGG | - | chr1.1:76844081-76844100 | MS.gene76849:intron | 15.0% |
| !! | TAATATTATCTGAAAAAGAT+GGG | + | chr1.1:76845037-76845056 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr1.1:76842727-76842746 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr1.1:76842830-76842849 | None:intergenic | 15.0% |
| !!! | TGAAGTTTTTATTTTTACTT+TGG | - | chr1.1:76844446-76844465 | MS.gene76849:intron | 15.0% |
| !! | AAAACTGTAAATATGAACAA+AGG | + | chr1.1:76844586-76844605 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr1.1:76842844-76842863 | MS.gene76849:intron | 20.0% |
| !! | CTAATATTATCTGAAAAAGA+TGG | + | chr1.1:76845038-76845057 | None:intergenic | 20.0% |
| !! | TATACTCAGAAACTTTATAT+GGG | + | chr1.1:76843895-76843914 | None:intergenic | 20.0% |
| !! | TTATACTCAGAAACTTTATA+TGG | + | chr1.1:76843896-76843915 | None:intergenic | 20.0% |
| !!! | AGTTTTTATTTTTACTTTGG+CGG | - | chr1.1:76844449-76844468 | MS.gene76849:intron | 20.0% |
| !!! | TATCTTTTGTTATAGAAAGA+GGG | + | chr1.1:76843180-76843199 | None:intergenic | 20.0% |
| !!! | TTAATCTTTTCGTTTGAAAA+TGG | - | chr1.1:76843444-76843463 | MS.gene76849:CDS | 20.0% |
| !!! | TTATCTTTTGTTATAGAAAG+AGG | + | chr1.1:76843181-76843200 | None:intergenic | 20.0% |
| ! | AAAGACTCAAATATTTACCA+AGG | + | chr1.1:76843423-76843442 | None:intergenic | 25.0% |
| ! | AAGAATAGGAAATTTCAGAA+AGG | - | chr1.1:76844757-76844776 | MS.gene76849:intron | 25.0% |
| ! | AAGACTCAAATATTTACCAA+GGG | + | chr1.1:76843422-76843441 | None:intergenic | 25.0% |
| ! | ATAGTTATATATAACCCACA+TGG | - | chr1.1:76843524-76843543 | MS.gene76849:intron | 25.0% |
| ! | ATGATATCCTAAAGATATGT+AGG | + | chr1.1:76844512-76844531 | None:intergenic | 25.0% |
| ! | CAGAATAGAATGAAAAGAAT+GGG | + | chr1.1:76844338-76844357 | None:intergenic | 25.0% |
| ! | TAATAAAAAAACTCAGCATC+CGG | + | chr1.1:76843725-76843744 | None:intergenic | 25.0% |
| ! | TAGTTATATATAACCCACAT+GGG | - | chr1.1:76843525-76843544 | MS.gene76849:intron | 25.0% |
| ! | TCAGAATAGAATGAAAAGAA+TGG | + | chr1.1:76844339-76844358 | None:intergenic | 25.0% |
| ! | TGATATCCTAAAGATATGTA+GGG | + | chr1.1:76844511-76844530 | None:intergenic | 25.0% |
| !! | AATTTCCTATTCTTTGTTTG+TGG | + | chr1.1:76844751-76844770 | None:intergenic | 25.0% |
| !! | CTCTAAAAAATATCATATGC+TGG | + | chr1.1:76845138-76845157 | None:intergenic | 25.0% |
| !! | GTTACTAGACATATATTTTC+TGG | - | chr1.1:76844363-76844382 | MS.gene76849:intron | 25.0% |
| !! | TATGCATTAGATTTTTCACA+TGG | + | chr1.1:76844726-76844745 | None:intergenic | 25.0% |
| !!! | AATGCAGTAGTTTTGTTTTT+TGG | - | chr1.1:76844048-76844067 | MS.gene76849:intron | 25.0% |
| !!! | AATTGAGCTTGTTTTTGTAT+TGG | - | chr1.1:76843049-76843068 | MS.gene76849:intron | 25.0% |
| !!! | ATGCAGTAGTTTTGTTTTTT+GGG | - | chr1.1:76844049-76844068 | MS.gene76849:intron | 25.0% |
| !!! | ATTCCTAGGAAATTTGATTT+TGG | - | chr1.1:76844235-76844254 | MS.gene76849:intron | 25.0% |
| !!! | TGATTTGCTTTGTTCTTATT+AGG | - | chr1.1:76843110-76843129 | MS.gene76849:intron | 25.0% |
| !!! | TGTTTTTGTATTGGAAACAT+TGG | - | chr1.1:76843058-76843077 | MS.gene76849:intron | 25.0% |
| !!! | TTTCAGTTTTTTCTTTGTTG+AGG | - | chr1.1:76845230-76845249 | MS.gene76849:CDS | 25.0% |
| !!! | TTTTTAGAGAATCAACATTC+TGG | - | chr1.1:76845149-76845168 | MS.gene76849:CDS | 25.0% |
| AAACGATGAAGACGAAATTA+AGG | + | chr1.1:76842203-76842222 | None:intergenic | 30.0% | |
| AACAAGCTCAATTGAATTTC+AGG | + | chr1.1:76843042-76843061 | None:intergenic | 30.0% | |
| AAGACATGTTATGTTACCAT+CGG | - | chr1.1:76843782-76843801 | MS.gene76849:intron | 30.0% | |
| AAGCCAAAATCAAATTTCCT+AGG | + | chr1.1:76844241-76844260 | None:intergenic | 30.0% | |
| AATAAAAAAACTCAGCATCC+GGG | + | chr1.1:76843724-76843743 | None:intergenic | 30.0% | |
| ACAAGCTCAATTGAATTTCA+GGG | + | chr1.1:76843041-76843060 | None:intergenic | 30.0% | |
| ACTAGTAACAATTGAAGACT+TGG | - | chr1.1:76845073-76845092 | MS.gene76849:CDS | 30.0% | |
| AGACTCAAATATTTACCAAG+GGG | + | chr1.1:76843421-76843440 | None:intergenic | 30.0% | |
| ATAAGCCACAAACAAAGAAT+AGG | - | chr1.1:76844743-76844762 | MS.gene76849:intron | 30.0% | |
| ATGAGTTGTTTATCCAAACA+TGG | + | chr1.1:76843136-76843155 | None:intergenic | 30.0% | |
| CAATAAAGACATGGAAAAAG+AGG | + | chr1.1:76844314-76844333 | None:intergenic | 30.0% | |
| CCACATATAATTCTCAGAAA+AGG | - | chr1.1:76842508-76842527 | MS.gene76849:intron | 30.0% | |
| CTTCAATTGTTACTAGTGTT+GGG | + | chr1.1:76845070-76845089 | None:intergenic | 30.0% | |
| GATGCTTTCAAACATTGAAT+TGG | + | chr1.1:76843011-76843030 | None:intergenic | 30.0% | |
| GATTTATTTCATGACAGTCT+CGG | - | chr1.1:76845481-76845500 | MS.gene76849:CDS | 30.0% | |
| TAGATCTCTATCTCTAGTTA+TGG | - | chr1.1:76844414-76844433 | MS.gene76849:intron | 30.0% | |
| TATAGAATTGCAAAGTTCAG+AGG | + | chr1.1:76845265-76845284 | None:intergenic | 30.0% | |
| TCCTAAAAACTAGTCAATGT+AGG | + | chr1.1:76845200-76845219 | None:intergenic | 30.0% | |
| TCTTCAATTGTTACTAGTGT+TGG | + | chr1.1:76845071-76845090 | None:intergenic | 30.0% | |
| TGGTAACATAACATGTCTTA+AGG | + | chr1.1:76843781-76843800 | None:intergenic | 30.0% | |
| TTCTCTGAATTAGGATAACA+AGG | + | chr1.1:76844662-76844681 | None:intergenic | 30.0% | |
| TTGTTATCCTAATTCAGAGA+AGG | - | chr1.1:76844661-76844680 | MS.gene76849:intron | 30.0% | |
| TTTGATTGGTATGCGTTATT+TGG | - | chr1.1:76842480-76842499 | MS.gene76849:intron | 30.0% | |
| ! | AAAGAGACACCTTATCATTT+TGG | + | chr1.1:76845518-76845537 | None:intergenic | 30.0% |
| ! | AATATGATGAGGGTATGAAA+AGG | + | chr1.1:76842670-76842689 | None:intergenic | 30.0% |
| ! | ACTAGACATATATTTTCTGG+TGG | - | chr1.1:76844366-76844385 | MS.gene76849:intron | 30.0% |
| ! | ATTTGCATTTTATGGACCAA+TGG | - | chr1.1:76844196-76844215 | MS.gene76849:intron | 30.0% |
| ! | CATGATATCGTCTTTGTTTA+TGG | + | chr1.1:76844849-76844868 | None:intergenic | 30.0% |
| ! | CTCTTTTTCCATGTCTTTAT+TGG | - | chr1.1:76844312-76844331 | MS.gene76849:intron | 30.0% |
| ! | GATCCTGAATTTGCATTTTA+TGG | - | chr1.1:76844188-76844207 | MS.gene76849:intron | 30.0% |
| ! | TCTTTTCGTTTGAAAATGGA+TGG | - | chr1.1:76843448-76843467 | MS.gene76849:CDS | 30.0% |
| ! | TGATCACATGTCTGATTTTA+TGG | - | chr1.1:76842564-76842583 | MS.gene76849:intron | 30.0% |
| ! | TGTGCAGAGTATTAATTGAA+GGG | + | chr1.1:76842801-76842820 | None:intergenic | 30.0% |
| ! | TTGAAGAAGAGATGAAGTTT+TGG | + | chr1.1:76842265-76842284 | None:intergenic | 30.0% |
| ! | TTTCTGAGAATTATATGTGG+TGG | + | chr1.1:76842508-76842527 | None:intergenic | 30.0% |
| ! | TTTGCATTTTATGGACCAAT+GGG | - | chr1.1:76844197-76844216 | MS.gene76849:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr1.1:76842936-76842955 | MS.gene76849:intron | 30.0% |
| !! | AAGAGCATATTTTGAGTCAT+TGG | - | chr1.1:76842387-76842406 | MS.gene76849:intron | 30.0% |
| !! | CCTTTTCTGAGAATTATATG+TGG | + | chr1.1:76842511-76842530 | None:intergenic | 30.0% |
| !!! | TCCTACATTGACTAGTTTTT+AGG | - | chr1.1:76845196-76845215 | MS.gene76849:CDS | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr1.1:76842935-76842954 | None:intergenic | 30.0% |
| AAAGTGCAGTGAATTTATGG+TGG | + | chr1.1:76845366-76845385 | None:intergenic | 35.0% | |
| AAGTTTCTGAGTATAATCGC+TGG | - | chr1.1:76843900-76843919 | MS.gene76849:intron | 35.0% | |
| ACCATAAATTCACTGCACTT+TGG | - | chr1.1:76845365-76845384 | MS.gene76849:intron | 35.0% | |
| AGAGAGAATCGTAGTATAAG+GGG | + | chr1.1:76844893-76844912 | None:intergenic | 35.0% | |
| AGATAGAGATCTAAGTTTGC+AGG | + | chr1.1:76844407-76844426 | None:intergenic | 35.0% | |
| ATCGTTTATAAGGCACAAGA+AGG | + | chr1.1:76843488-76843507 | None:intergenic | 35.0% | |
| CAAGCAAACGATAGAAAAGT+AGG | - | chr1.1:76844287-76844306 | MS.gene76849:intron | 35.0% | |
| CCATAAATTCACTGCACTTT+GGG | - | chr1.1:76845366-76845385 | MS.gene76849:intron | 35.0% | |
| CGATCAAAATGATAGACTTC+AGG | + | chr1.1:76842451-76842470 | None:intergenic | 35.0% | |
| GAGAGAGAATCGTAGTATAA+GGG | + | chr1.1:76844894-76844913 | None:intergenic | 35.0% | |
| GATCGTACTATGTCTTTGAT+TGG | - | chr1.1:76842466-76842485 | MS.gene76849:intron | 35.0% | |
| GGATAACAAGGAACTAGTTA+TGG | + | chr1.1:76844650-76844669 | None:intergenic | 35.0% | |
| GGTCCATAAAATGCAAATTC+AGG | + | chr1.1:76844194-76844213 | None:intergenic | 35.0% | |
| GTACTTACAATTATGCCAGT+AGG | - | chr1.1:76843378-76843397 | MS.gene76849:CDS | 35.0% | |
| GTCTTTGAGTACAGAGTAAT+GGG | + | chr1.1:76844916-76844935 | None:intergenic | 35.0% | |
| TAGAGCGGAAAAAAGTAGTT+AGG | + | chr1.1:76844950-76844969 | None:intergenic | 35.0% | |
| TATGCTCTTTCTTTCGTCAT+TGG | + | chr1.1:76842376-76842395 | None:intergenic | 35.0% | |
| TCAGGATTGTTATAGATTCC+TGG | + | chr1.1:76845427-76845446 | None:intergenic | 35.0% | |
| TGTACAAGTAGTTGAACATC+AGG | + | chr1.1:76845445-76845464 | None:intergenic | 35.0% | |
| TGTTCTTATTAGGCCATGTT+TGG | - | chr1.1:76843120-76843139 | MS.gene76849:intron | 35.0% | |
| TTAAGACAATTGCAGACACT+TGG | - | chr1.1:76845332-76845351 | MS.gene76849:intron | 35.0% | |
| TTATGCAGGCATATAAGGAA+TGG | - | chr1.1:76845305-76845324 | MS.gene76849:intron | 35.0% | |
| TTCAGCAACTGCATTAAACA+AGG | + | chr1.1:76843819-76843838 | None:intergenic | 35.0% | |
| TTTAACAAGCTGTGTTATGC+AGG | - | chr1.1:76845291-76845310 | MS.gene76849:intron | 35.0% | |
| ! | AATGCAGTTGCTGAATTTTG+CGG | - | chr1.1:76843824-76843843 | MS.gene76849:intron | 35.0% |
| ! | CTCATGGTGCAAATTTTTGT+GGG | - | chr1.1:76843612-76843631 | MS.gene76849:intron | 35.0% |
| ! | GGTTTTCATTGCATTGTTGT+AGG | - | chr1.1:76842315-76842334 | MS.gene76849:intron | 35.0% |
| ! | GTGTGCAGAGTATTAATTGA+AGG | + | chr1.1:76842802-76842821 | None:intergenic | 35.0% |
| ! | TTCATTTAGGTTCTGTGAGA+GGG | - | chr1.1:76844094-76844113 | MS.gene76849:intron | 35.0% |
| ! | TTTGATGACAAAAGAACCGT+TGG | + | chr1.1:76842232-76842251 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr1.1:76842701-76842720 | None:intergenic | 35.0% |
| !! | CTTTGGGATGAGCATAAAAA+TGG | - | chr1.1:76845382-76845401 | MS.gene76849:CDS | 35.0% |
| !!! | GATTTTGGCTTTCTTTTCTC+AGG | - | chr1.1:76844250-76844269 | MS.gene76849:intron | 35.0% |
| !!! | GTTTTTTTGAGCTTACCTAC+TGG | + | chr1.1:76843396-76843415 | None:intergenic | 35.0% |
| AAGAAAGCTTCTTCCATAGC+TGG | + | chr1.1:76844812-76844831 | None:intergenic | 40.0% | |
| AAGCAGCCCTACATATCTTT+AGG | - | chr1.1:76844502-76844521 | MS.gene76849:intron | 40.0% | |
| AAGGGTTCCTTCTCTGAATT+AGG | + | chr1.1:76844671-76844690 | None:intergenic | 40.0% | |
| AGAAAGCTTCTTCCATAGCT+GGG | + | chr1.1:76844811-76844830 | None:intergenic | 40.0% | |
| AGAATGGGCCAATAAAGACA+TGG | + | chr1.1:76844323-76844342 | None:intergenic | 40.0% | |
| ATCGTAGTATAAGGGGTCAA+AGG | + | chr1.1:76844886-76844905 | None:intergenic | 40.0% | |
| CAAGGATAACTTAAGACCGA+TGG | + | chr1.1:76843801-76843820 | None:intergenic | 40.0% | |
| CAATTGACAACCACACATCA+AGG | + | chr1.1:76843086-76843105 | None:intergenic | 40.0% | |
| CCACAAAAATTTGCACCATG+AGG | + | chr1.1:76843614-76843633 | None:intergenic | 40.0% | |
| CCCAAAGTGCAGTGAATTTA+TGG | + | chr1.1:76845369-76845388 | None:intergenic | 40.0% | |
| CGTCTTTGAGTACAGAGTAA+TGG | + | chr1.1:76844917-76844936 | None:intergenic | 40.0% | |
| CTCAGAAAAGGTTTGATTGC+TGG | - | chr1.1:76842520-76842539 | MS.gene76849:intron | 40.0% | |
| CTGTGTTATGCAGGCATATA+AGG | - | chr1.1:76845300-76845319 | MS.gene76849:intron | 40.0% | |
| GACTTATCCGTCAAAGAAGT+CGG | - | chr1.1:76842168-76842187 | MS.gene76849:CDS | 40.0% | |
| GATGAGCATAAAAATGGTGC+TGG | - | chr1.1:76845388-76845407 | MS.gene76849:CDS | 40.0% | |
| GGAGAAATTGTTGTCGAGTT+TGG | + | chr1.1:76842148-76842167 | None:intergenic | 40.0% | |
| GGAGAGAGAATCGTAGTATA+AGG | + | chr1.1:76844895-76844914 | None:intergenic | 40.0% | |
| GGAGGGAGTAAATATGATGA+GGG | + | chr1.1:76842680-76842699 | None:intergenic | 40.0% | |
| TAAGTACTTGCGAGACTGTT+TGG | + | chr1.1:76843365-76843384 | None:intergenic | 40.0% | |
| TAATTCAGAGAAGGAACCCT+TGG | - | chr1.1:76844670-76844689 | MS.gene76849:intron | 40.0% | |
| TAGACTTCAGGAACATGATC+AGG | + | chr1.1:76842439-76842458 | None:intergenic | 40.0% | |
| TCTCCTATGCAACGAACATA+TGG | + | chr1.1:76842346-76842365 | None:intergenic | 40.0% | |
| TTCATCGTTTCCAACACCAA+CGG | - | chr1.1:76842213-76842232 | MS.gene76849:CDS | 40.0% | |
| TTCGTTGCATAGGAGAATCA+TGG | - | chr1.1:76842350-76842369 | MS.gene76849:intron | 40.0% | |
| TTGCCATATGTTCGTTGCAT+AGG | - | chr1.1:76842340-76842359 | MS.gene76849:intron | 40.0% | |
| TTTCATGACAGTCTCGGATT+TGG | - | chr1.1:76845487-76845506 | MS.gene76849:CDS | 40.0% | |
| ! | ATCAGTGTTTTCTCGTTCAG+AGG | + | chr1.1:76842093-76842112 | None:intergenic | 40.0% |
| ! | ATGCAGTTGCTGAATTTTGC+GGG | - | chr1.1:76843825-76843844 | MS.gene76849:intron | 40.0% |
| ! | CCTCATGGTGCAAATTTTTG+TGG | - | chr1.1:76843611-76843630 | MS.gene76849:intron | 40.0% |
| ! | CGAATGGACTTGTGGAATTT+GGG | - | chr1.1:76844990-76845009 | MS.gene76849:CDS | 40.0% |
| ! | CGGTTCTTTTGTCATCAAAC+AGG | - | chr1.1:76842233-76842252 | MS.gene76849:CDS | 40.0% |
| ! | GAATGGACTTGTGGAATTTG+GGG | - | chr1.1:76844991-76845010 | MS.gene76849:CDS | 40.0% |
| ! | GACTTCTTTGACGGATAAGT+CGG | + | chr1.1:76842169-76842188 | None:intergenic | 40.0% |
| ! | GTTCATTTAGGTTCTGTGAG+AGG | - | chr1.1:76844093-76844112 | MS.gene76849:intron | 40.0% |
| ! | TCATTGGCGTTGAAAGAAGA+GGG | - | chr1.1:76842403-76842422 | MS.gene76849:intron | 40.0% |
| ! | TGGTGTTGAGTATCCTTTGT+TGG | - | chr1.1:76842540-76842559 | MS.gene76849:intron | 40.0% |
| ! | TTTGATATCGGAGCATTCCT+AGG | - | chr1.1:76844221-76844240 | MS.gene76849:intron | 40.0% |
| !! | AACATTGGTTCCTTGATGTG+TGG | - | chr1.1:76843073-76843092 | MS.gene76849:intron | 40.0% |
| !! | AAGCTTGCTCTGGCTTTAAA+TGG | - | chr1.1:76843647-76843666 | MS.gene76849:CDS | 40.0% |
| !! | AGCTTGCTCTGGCTTTAAAT+GGG | - | chr1.1:76843648-76843667 | MS.gene76849:CDS | 40.0% |
| !! | GGACCAATGGGTTTTGATAT+CGG | - | chr1.1:76844209-76844228 | MS.gene76849:intron | 40.0% |
| !! | TACTTTGGCGGATTTGTACA+CGG | - | chr1.1:76844461-76844480 | MS.gene76849:intron | 40.0% |
| !! | TTGGCTTTCTTTTCTCAGGA+TGG | - | chr1.1:76844254-76844273 | MS.gene76849:intron | 40.0% |
| !!! | ACTACTTTTTTCCGCTCTAC+TGG | - | chr1.1:76844951-76844970 | MS.gene76849:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1.1:76842940-76842959 | MS.gene76849:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1.1:76842959-76842940 | None:intergenic | 40.0% |
| AATTGCACCGTCCATTAGTG+GGG | + | chr1.1:76843675-76843694 | None:intergenic | 45.0% | |
| AGCTCAAAAAAACAGCCCCT+TGG | - | chr1.1:76843403-76843422 | MS.gene76849:CDS | 45.0% | |
| ATACACGGAGATCTACACAC+TGG | - | chr1.1:76844128-76844147 | MS.gene76849:intron | 45.0% | |
| CAATTGCACCGTCCATTAGT+GGG | + | chr1.1:76843676-76843695 | None:intergenic | 45.0% | |
| CAGATCAACGTGCATACCAA+GGG | + | chr1.1:76844689-76844708 | None:intergenic | 45.0% | |
| CGGAGGGAGTAAATATGATG+AGG | + | chr1.1:76842681-76842700 | None:intergenic | 45.0% | |
| GACAAAAGAACCGTTGGTGT+TGG | + | chr1.1:76842226-76842245 | None:intergenic | 45.0% | |
| GACATGTGATCAGCCAACAA+AGG | + | chr1.1:76842556-76842575 | None:intergenic | 45.0% | |
| GATTTGTACACGGAAGAAGC+TGG | - | chr1.1:76844471-76844490 | MS.gene76849:intron | 45.0% | |
| GCTCCGATATCAAAACCCAT+TGG | + | chr1.1:76844215-76844234 | None:intergenic | 45.0% | |
| GGAAGAAGCTTTCTTGCTCA+AGG | - | chr1.1:76844817-76844836 | MS.gene76849:intron | 45.0% | |
| GTTCTACCACGGAGCATAAA+CGG | - | chr1.1:76842620-76842639 | MS.gene76849:intron | 45.0% | |
| GTTCTCATGCTTTGTCTGCA+TGG | - | chr1.1:76844621-76844640 | MS.gene76849:intron | 45.0% | |
| GTTTATGCTCCGTGGTAGAA+CGG | + | chr1.1:76842621-76842640 | None:intergenic | 45.0% | |
| TCAATTGCACCGTCCATTAG+TGG | + | chr1.1:76843677-76843696 | None:intergenic | 45.0% | |
| TCTGCTTTACCGTTCTACCA+CGG | - | chr1.1:76842609-76842628 | MS.gene76849:intron | 45.0% | |
| TTCTACCACGGAGCATAAAC+GGG | - | chr1.1:76842621-76842640 | MS.gene76849:intron | 45.0% | |
| TTGGCGCTGCCAAAATGATA+AGG | - | chr1.1:76845506-76845525 | MS.gene76849:CDS | 45.0% | |
| TTTAAATGGGCCCCCACTAA+TGG | - | chr1.1:76843661-76843680 | MS.gene76849:CDS | 45.0% | |
| ! | AAGCCAGAGCAAGCTTTGTA+TGG | + | chr1.1:76843643-76843662 | None:intergenic | 45.0% |
| ! | AGTCCATACAAAGCTTGCTC+TGG | - | chr1.1:76843637-76843656 | MS.gene76849:CDS | 45.0% |
| ! | CGAGTTTGGATGAAAGTGCA+GGG | + | chr1.1:76842134-76842153 | None:intergenic | 45.0% |
| ! | GCGAATGGACTTGTGGAATT+TGG | - | chr1.1:76844989-76845008 | MS.gene76849:CDS | 45.0% |
| ! | GTCATTGGCGTTGAAAGAAG+AGG | - | chr1.1:76842402-76842421 | MS.gene76849:intron | 45.0% |
| ! | TCGAGTTTGGATGAAAGTGC+AGG | + | chr1.1:76842135-76842154 | None:intergenic | 45.0% |
| ! | TGCTGAATTTTGCGGGAATG+TGG | - | chr1.1:76843832-76843851 | MS.gene76849:intron | 45.0% |
| ! | TTTGGATGAAAGTGCAGGGA+TGG | + | chr1.1:76842130-76842149 | None:intergenic | 45.0% |
| !! | AATTGATCCCCCGGATTAGT+AGG | - | chr1.1:76843691-76843710 | MS.gene76849:CDS | 45.0% |
| !! | GCATAAAAATGGTGCTGGTG+AGG | - | chr1.1:76845393-76845412 | MS.gene76849:CDS | 45.0% |
| !! | TCTACACACTGGTTCTGTGA+TGG | - | chr1.1:76844139-76844158 | MS.gene76849:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1.1:76842939-76842958 | MS.gene76849:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1.1:76842958-76842939 | None:intergenic | 45.0% |
| AAGAGTAGAGCTCCCAGCTA+TGG | - | chr1.1:76844796-76844815 | MS.gene76849:intron | 50.0% | |
| AGCATCACGGTCAAGATGAG+GGG | + | chr1.1:76843930-76843949 | None:intergenic | 50.0% | |
| AGGGCTCAGGCACTAATACA+CGG | - | chr1.1:76844113-76844132 | MS.gene76849:intron | 50.0% | |
| ATTGCACCGTCCATTAGTGG+GGG | + | chr1.1:76843674-76843693 | None:intergenic | 50.0% | |
| CAGCATCACGGTCAAGATGA+GGG | + | chr1.1:76843931-76843950 | None:intergenic | 50.0% | |
| CCAGATCAACGTGCATACCA+AGG | + | chr1.1:76844690-76844709 | None:intergenic | 50.0% | |
| CCTTGGTATGCACGTTGATC+TGG | - | chr1.1:76844687-76844706 | MS.gene76849:intron | 50.0% | |
| CTTGAGAGGATCACACTCCA+AGG | + | chr1.1:76843576-76843595 | None:intergenic | 50.0% | |
| CTTGGAGTGTGATCCTCTCA+AGG | - | chr1.1:76843574-76843593 | MS.gene76849:intron | 50.0% | |
| GCCATCTCCGACTTCTTTGA+CGG | + | chr1.1:76842178-76842197 | None:intergenic | 50.0% | |
| TCAGCATCACGGTCAAGATG+AGG | + | chr1.1:76843932-76843951 | None:intergenic | 50.0% | |
| TCATCTTGACCGTGATGCTG+AGG | - | chr1.1:76843931-76843950 | MS.gene76849:intron | 50.0% | |
| TCCGTCAAAGAAGTCGGAGA+TGG | - | chr1.1:76842174-76842193 | MS.gene76849:CDS | 50.0% | |
| TCCTCTCAAGGTCTCAGGTT+CGG | - | chr1.1:76843586-76843605 | MS.gene76849:intron | 50.0% | |
| TGTGATCCTCTCAAGGTCTC+AGG | - | chr1.1:76843581-76843600 | MS.gene76849:intron | 50.0% | |
| TTCCACAAGTCCATTCGCAC+AGG | + | chr1.1:76844987-76845006 | None:intergenic | 50.0% | |
| !! | GTGGTGTAGGCTTTAGACCT+TGG | - | chr1.1:76843556-76843575 | MS.gene76849:intron | 50.0% |
| AATGGGCCCCCACTAATGGA+CGG | - | chr1.1:76843665-76843684 | MS.gene76849:CDS | 55.0% | |
| ACCACGGAGCATAAACGGGA+TGG | - | chr1.1:76842625-76842644 | MS.gene76849:intron | 55.0% | |
| ACCATCCCGTTTATGCTCCG+TGG | + | chr1.1:76842629-76842648 | None:intergenic | 55.0% | |
| ACCGTGATGCTGAGGCTGTT+CGG | - | chr1.1:76843939-76843958 | MS.gene76849:intron | 55.0% | |
| CCAACGACCTACTAATCCGG+GGG | + | chr1.1:76843701-76843720 | None:intergenic | 55.0% | |
| CTGTGTTAGGCCTGTGCGAA+TGG | - | chr1.1:76844974-76844993 | MS.gene76849:intron | 55.0% | |
| GCCAACGACCTACTAATCCG+GGG | + | chr1.1:76843702-76843721 | None:intergenic | 55.0% | |
| GCCTAACACAGCCAGTAGAG+CGG | + | chr1.1:76844965-76844984 | None:intergenic | 55.0% | |
| GCGGGAATGTGGAGTTATGC+AGG | - | chr1.1:76843843-76843862 | MS.gene76849:intron | 55.0% | |
| GCTGGTGAGGCATATCTTCC+AGG | - | chr1.1:76845406-76845425 | MS.gene76849:CDS | 55.0% | |
| GGCCAACGACCTACTAATCC+GGG | + | chr1.1:76843703-76843722 | None:intergenic | 55.0% | |
| GGGCCAACGACCTACTAATC+CGG | + | chr1.1:76843704-76843723 | None:intergenic | 55.0% | |
| GTCTCAGGTTCGGATCCTCA+TGG | - | chr1.1:76843596-76843615 | MS.gene76849:intron | 55.0% | |
| GTTATGCAGGCTCACTGAGC+AGG | - | chr1.1:76843856-76843875 | MS.gene76849:intron | 55.0% | |
| TAGGTTCTGTGAGAGGGCTC+AGG | - | chr1.1:76844100-76844119 | MS.gene76849:intron | 55.0% | |
| TCCGAACCTGAGACCTTGAG+AGG | + | chr1.1:76843590-76843609 | None:intergenic | 55.0% | |
| ! | GGATTAGTAGGTCGTTGGCC+CGG | - | chr1.1:76843703-76843722 | MS.gene76849:CDS | 55.0% |
| ! | GGTCTAAAGCCTACACCACC+AGG | + | chr1.1:76843555-76843574 | None:intergenic | 55.0% |
| ! | TCCGCTCTACTGGCTGTGTT+AGG | - | chr1.1:76844961-76844980 | MS.gene76849:intron | 55.0% |
| !! | ATAACCCACATGGGCTAGCC+TGG | - | chr1.1:76843534-76843553 | MS.gene76849:intron | 55.0% |
| CCCGAACAGCCTCAGCATCA+CGG | + | chr1.1:76843943-76843962 | None:intergenic | 60.0% | |
| CCGTGATGCTGAGGCTGTTC+GGG | - | chr1.1:76843940-76843959 | MS.gene76849:intron | 60.0% | |
| GGACGGTGCAATTGATCCCC+CGG | - | chr1.1:76843682-76843701 | MS.gene76849:CDS | 60.0% | |
| ! | ACCACCAGGCTAGCCCATGT+GGG | + | chr1.1:76843541-76843560 | None:intergenic | 60.0% |
| ! | GGCCTGTGCGAATGGACTTG+TGG | - | chr1.1:76844982-76845001 | MS.gene76849:intron | 60.0% |
| !! | ATGGGCTAGCCTGGTGGTGT+AGG | - | chr1.1:76843543-76843562 | MS.gene76849:intron | 60.0% |
| !! | CCCCCGGATTAGTAGGTCGT+TGG | - | chr1.1:76843698-76843717 | MS.gene76849:CDS | 60.0% |
| ! | CACCACCAGGCTAGCCCATG+TGG | + | chr1.1:76843542-76843561 | None:intergenic | 65.0% |
| !! | ACCCACATGGGCTAGCCTGG+TGG | - | chr1.1:76843537-76843556 | MS.gene76849:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 76842066 | 76845564 | 76842066 | ID=MS.gene76849 |
| chr1.1 | mRNA | 76842066 | 76845564 | 76842066 | ID=MS.gene76849.t1;Parent=MS.gene76849 |
| chr1.1 | exon | 76845376 | 76845564 | 76845376 | ID=MS.gene76849.t1.exon1;Parent=MS.gene76849.t1 |
| chr1.1 | CDS | 76845376 | 76845564 | 76845376 | ID=cds.MS.gene76849.t1;Parent=MS.gene76849.t1 |
| chr1.1 | exon | 76844984 | 76845293 | 76844984 | ID=MS.gene76849.t1.exon2;Parent=MS.gene76849.t1 |
| chr1.1 | CDS | 76844984 | 76845293 | 76844984 | ID=cds.MS.gene76849.t1;Parent=MS.gene76849.t1 |
| chr1.1 | exon | 76843625 | 76843799 | 76843625 | ID=MS.gene76849.t1.exon3;Parent=MS.gene76849.t1 |
| chr1.1 | CDS | 76843625 | 76843799 | 76843625 | ID=cds.MS.gene76849.t1;Parent=MS.gene76849.t1 |
| chr1.1 | exon | 76843326 | 76843527 | 76843326 | ID=MS.gene76849.t1.exon4;Parent=MS.gene76849.t1 |
| chr1.1 | CDS | 76843326 | 76843527 | 76843326 | ID=cds.MS.gene76849.t1;Parent=MS.gene76849.t1 |
| chr1.1 | exon | 76842066 | 76842317 | 76842066 | ID=MS.gene76849.t1.exon5;Parent=MS.gene76849.t1 |
| chr1.1 | CDS | 76842066 | 76842317 | 76842066 | ID=cds.MS.gene76849.t1;Parent=MS.gene76849.t1 |
| Gene Sequence |
| Protein sequence |
