Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77001.t1 | XP_003618118.2 | 91.9 | 1003 | 48 | 7 | 3 | 975 | 2 | 1001 | 0.00E+00 | 1735.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77001.t1 | Q9HGL2 | 25.8 | 403 | 240 | 7 | 4 | 406 | 2 | 345 | 2.2e-17 | 92.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77001.t1 | G7KFG0 | 91.9 | 1003 | 48 | 7 | 3 | 975 | 2 | 1001 | 0.0e+00 | 1735.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08324 | MS.gene77001 | PPI |
| MS.gene071437 | MS.gene77001 | PPI |
| MS.gene34936 | MS.gene77001 | PPI |
| MS.gene77001 | MS.gene071439 | PPI |
| MS.gene023295 | MS.gene77001 | PPI |
| MS.gene77001 | MS.gene071438 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77001.t1 | MTR_5g099170 | 93.121 | 1003 | 36 | 7 | 3 | 975 | 2 | 1001 | 0.0 | 1816 |
| MS.gene77001.t1 | MTR_1g018480 | 75.801 | 843 | 109 | 13 | 143 | 975 | 6 | 763 | 0.0 | 1202 |
| MS.gene77001.t1 | MTR_3g115640 | 40.276 | 869 | 430 | 19 | 109 | 938 | 246 | 1064 | 3.90e-173 | 536 |
| MS.gene77001.t1 | MTR_3g115640 | 55.689 | 167 | 63 | 4 | 10 | 166 | 5 | 170 | 2.31e-41 | 165 |
| MS.gene77001.t1 | MTR_4g132840 | 29.091 | 165 | 107 | 2 | 6 | 170 | 10 | 164 | 5.26e-13 | 73.2 |
| MS.gene77001.t1 | MTR_3g054130 | 37.079 | 89 | 56 | 0 | 6 | 94 | 13 | 101 | 1.87e-12 | 71.6 |
| MS.gene77001.t1 | MTR_2g025180 | 42.500 | 80 | 46 | 0 | 15 | 94 | 14 | 93 | 2.33e-12 | 71.2 |
| MS.gene77001.t1 | MTR_5g093720 | 36.782 | 87 | 55 | 0 | 6 | 92 | 10 | 96 | 1.29e-11 | 68.2 |
| MS.gene77001.t1 | MTR_5g093720 | 37.647 | 85 | 53 | 0 | 6 | 90 | 10 | 94 | 1.68e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77001.t1 | AT1G20760 | 42.685 | 1080 | 439 | 34 | 10 | 975 | 6 | 1019 | 0.0 | 685 |
| MS.gene77001.t1 | AT1G21630 | 43.710 | 1089 | 434 | 32 | 13 | 971 | 11 | 1050 | 0.0 | 684 |
| MS.gene77001.t1 | AT1G21630 | 45.020 | 1004 | 390 | 26 | 13 | 894 | 11 | 974 | 0.0 | 682 |
| MS.gene77001.t1 | AT1G21630 | 42.538 | 1119 | 433 | 34 | 13 | 971 | 11 | 1079 | 0.0 | 667 |
| MS.gene77001.t1 | AT1G21630 | 43.714 | 1034 | 389 | 28 | 13 | 894 | 11 | 1003 | 0.0 | 664 |
| MS.gene77001.t1 | AT4G05520 | 40.741 | 81 | 48 | 0 | 14 | 94 | 19 | 99 | 2.38e-13 | 74.3 |
| MS.gene77001.t1 | AT4G05520 | 40.741 | 81 | 48 | 0 | 14 | 94 | 19 | 99 | 2.44e-13 | 74.3 |
| MS.gene77001.t1 | AT3G20290 | 38.202 | 89 | 55 | 0 | 2 | 90 | 6 | 94 | 4.87e-13 | 73.6 |
| MS.gene77001.t1 | AT3G20290 | 38.202 | 89 | 55 | 0 | 2 | 90 | 6 | 94 | 4.87e-13 | 73.6 |
| MS.gene77001.t1 | AT3G20290 | 38.202 | 89 | 55 | 0 | 2 | 90 | 6 | 94 | 4.87e-13 | 73.6 |
Find 254 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCCAAGACTGGAATTT+TGG | 0.083383 | 5.1:-80854217 | None:intergenic |
| TTAGGCGACGCTACAAATTT+TGG | 0.153429 | 5.1:-80858246 | None:intergenic |
| TCTGCCATTGTTCCTGTATC+TGG | 0.185414 | 5.1:+80853302 | MS.gene77001:CDS |
| CTTGCGCATCATCTTGATTA+TGG | 0.192134 | 5.1:-80858464 | None:intergenic |
| AACTGAATCCACTGGTCTTC+TGG | 0.214249 | 5.1:-80861695 | None:intergenic |
| CCCAATCAGCAGCTCCTTCT+TGG | 0.235708 | 5.1:-80856758 | None:intergenic |
| GACAACTATTTCTTTAGTTC+TGG | 0.248675 | 5.1:+80861618 | MS.gene77001:CDS |
| TCCTCTGCCTTCCCTGGGTT+TGG | 0.251656 | 5.1:+80853050 | MS.gene77001:CDS |
| CCAGATGAAGTGGGCATATT+AGG | 0.254876 | 5.1:-80853458 | None:intergenic |
| CTAGAAAAGGATCTGATAAT+TGG | 0.254950 | 5.1:+80861988 | MS.gene77001:CDS |
| GCAACTTCCTCTGCCTTCCC+TGG | 0.257057 | 5.1:+80853044 | MS.gene77001:CDS |
| ATGATGATATTGATTCAGTT+TGG | 0.264630 | 5.1:+80860331 | MS.gene77001:CDS |
| TGCTTTCTCTCAGAGAGTTT+TGG | 0.272504 | 5.1:+80853832 | MS.gene77001:CDS |
| GACTCGGATCCCTTTGGCTC+TGG | 0.272802 | 5.1:+80861933 | MS.gene77001:CDS |
| GTGTCAAAGGTTCCCCAATT+AGG | 0.276461 | 5.1:-80860306 | None:intergenic |
| TTGCGCATCATCTTGATTAT+GGG | 0.278394 | 5.1:-80858463 | None:intergenic |
| TCTGATTTATCATCACTCTT+AGG | 0.279359 | 5.1:-80858264 | None:intergenic |
| AATGCAGCTTTAACCATTTC+AGG | 0.285045 | 5.1:-80852828 | None:intergenic |
| ATATCAGGAAGAATATTATT+TGG | 0.285131 | 5.1:-80853912 | None:intergenic |
| CTTCTTGCAAATGGACTATT+AGG | 0.288630 | 5.1:-80858369 | None:intergenic |
| ATCCTTGTGGAGAATTGTTT+TGG | 0.291045 | 5.1:-80853274 | None:intergenic |
| GTCTCTTTCTTCCAAGGTTC+CGG | 0.291513 | 5.1:+80852528 | MS.gene77001:CDS |
| CTTTCTGATGAAGTCCTAAA+AGG | 0.307251 | 5.1:-80861957 | None:intergenic |
| TGATGATATTGATTCAGTTT+GGG | 0.312070 | 5.1:+80860332 | MS.gene77001:CDS |
| CCCACTTCATCTGGACTTCC+AGG | 0.313488 | 5.1:+80853467 | MS.gene77001:CDS |
| CCTAATATGCCCACTTCATC+TGG | 0.322984 | 5.1:+80853458 | MS.gene77001:CDS |
| CAAGGACTTCCTGCTGTTGC+TGG | 0.340703 | 5.1:+80853011 | MS.gene77001:CDS |
| GAAATATACAAGAGTATTCA+TGG | 0.344953 | 5.1:+80853535 | MS.gene77001:CDS |
| CCAGTAGTCGTGGGTATATC+AGG | 0.346839 | 5.1:-80853927 | None:intergenic |
| GAACCAGCATGCCTCGGTTC+AGG | 0.352210 | 5.1:+80853433 | MS.gene77001:CDS |
| CCTCCCTGTGTCGCTCCATT+AGG | 0.353651 | 5.1:-80853866 | None:intergenic |
| GGTCCCCTTGGTCCAAGATT+TGG | 0.355694 | 5.1:-80852927 | None:intergenic |
| AGTGAGGTCTGCAAAGAATC+AGG | 0.355697 | 5.1:-80853356 | None:intergenic |
| ACATCAGTCTGAGTCATTCT+TGG | 0.356881 | 5.1:-80853509 | None:intergenic |
| AATGAACGGTGCAAGAAGTA+TGG | 0.359913 | 5.1:+80855763 | MS.gene77001:CDS |
| ACCTCAGACTACAAATGAAC+AGG | 0.361971 | 5.1:+80858290 | MS.gene77001:CDS |
| GGCTGTGAACGCAAAAGCTT+TGG | 0.363833 | 5.1:+80858212 | MS.gene77001:CDS |
| TTATTTCCGTCGTGCCGATT+TGG | 0.368421 | 5.1:+80852473 | MS.gene77001:CDS |
| GACTGATTTCCCCAAGTTAC+GGG | 0.369318 | 5.1:-80853972 | None:intergenic |
| CGAGGAACTTGTTTCTTAGT+TGG | 0.370132 | 5.1:+80853600 | MS.gene77001:CDS |
| AACCAGTCCTTAGGCCTTTG+TGG | 0.375132 | 5.1:-80861765 | None:intergenic |
| TCCTCTCAGCTACCAGTTAG+AGG | 0.375266 | 5.1:+80853092 | MS.gene77001:CDS |
| CCATCCGCTGCACCAAATCT+TGG | 0.376317 | 5.1:+80852915 | MS.gene77001:CDS |
| ATCTCCACAGTCCCGTAACT+TGG | 0.387756 | 5.1:+80853961 | MS.gene77001:CDS |
| CCAAGATTTGGTGCAGCGGA+TGG | 0.387842 | 5.1:-80852915 | None:intergenic |
| CAACTTCCTCTGCCTTCCCT+GGG | 0.387891 | 5.1:+80853045 | MS.gene77001:CDS |
| TTGGATTGCACTGTACCTAA+TGG | 0.391952 | 5.1:+80853851 | MS.gene77001:CDS |
| GGGAAGGCAGAGGAAGTTGC+AGG | 0.392222 | 5.1:-80853041 | None:intergenic |
| AGAACTTGAGAAAGAAATAG+TGG | 0.397031 | 5.1:+80854702 | MS.gene77001:CDS |
| AAGATTTGGTGCAGCGGATG+GGG | 0.399779 | 5.1:-80852913 | None:intergenic |
| CAAGATTTGGTGCAGCGGAT+GGG | 0.401111 | 5.1:-80852914 | None:intergenic |
| TTTCTTTAGTTCTGGAGACC+TGG | 0.408705 | 5.1:+80861626 | MS.gene77001:CDS |
| CAATTCTGACTTTGACGAAC+TGG | 0.408712 | 5.1:+80855729 | MS.gene77001:CDS |
| TGGGAAAATCACCGGGGAAC+AGG | 0.411070 | 5.1:+80853577 | MS.gene77001:CDS |
| TTTGATGACTCGGATCCCTT+TGG | 0.411828 | 5.1:+80861927 | MS.gene77001:CDS |
| GGAGGGACAGCAGCCGGCCT+TGG | 0.413740 | 5.1:-80854159 | None:intergenic |
| ACTCGGATCCCTTTGGCTCT+GGG | 0.413782 | 5.1:+80861934 | MS.gene77001:CDS |
| CCAAGAAGGAGCTGCTGATT+GGG | 0.414207 | 5.1:+80856758 | MS.gene77001:CDS |
| GGCTTCCTCCGTTGTCAACT+TGG | 0.415490 | 5.1:-80855412 | None:intergenic |
| TCTGACATTCGAAAGACTTC+CGG | 0.415671 | 5.1:+80858426 | MS.gene77001:CDS |
| TGGGATAAGCTTGAAGATAA+AGG | 0.418203 | 5.1:+80856789 | MS.gene77001:CDS |
| CCCTGTTCATTTGTAGTCTG+AGG | 0.423333 | 5.1:-80858291 | None:intergenic |
| TGCTGATTGGGATGAGGATT+GGG | 0.423748 | 5.1:+80856770 | MS.gene77001:CDS |
| TTACAGGAGAGAGAGCTTGA+TGG | 0.424029 | 5.1:+80861588 | MS.gene77001:intron |
| GTTTATAATAAAAGTGATGA+TGG | 0.425078 | 5.1:+80858330 | MS.gene77001:CDS |
| GAGGGAACCAGAGTTCTATT+AGG | 0.427729 | 5.1:+80853324 | MS.gene77001:CDS |
| CTGCTGATTGGGATGAGGAT+TGG | 0.428599 | 5.1:+80856769 | MS.gene77001:CDS |
| GGGACAGCAGCCGGCCTTGG+TGG | 0.433007 | 5.1:-80854156 | None:intergenic |
| TCCAAGAAGGAGCTGCTGAT+TGG | 0.435562 | 5.1:+80856757 | MS.gene77001:CDS |
| GAAATCCAAAATTCCAGTCT+TGG | 0.436376 | 5.1:+80854212 | MS.gene77001:CDS |
| ACCAGTCCTTAGGCCTTTGT+GGG | 0.442295 | 5.1:-80861764 | None:intergenic |
| TGACTGATTTCCCCAAGTTA+CGG | 0.443430 | 5.1:-80853973 | None:intergenic |
| GCGCGAACTCACTCCTGAAA+TGG | 0.448079 | 5.1:+80852815 | MS.gene77001:CDS |
| TTCTTTAGTTCTGGAGACCT+GGG | 0.448365 | 5.1:+80861627 | MS.gene77001:CDS |
| CTCTGGTTCCCTCCAGATAC+AGG | 0.448393 | 5.1:-80853314 | None:intergenic |
| TGCAAAGCCCACGACATTAG+TGG | 0.449716 | 5.1:+80855792 | MS.gene77001:CDS |
| GAAGATAAATATAAGCAAGT+TGG | 0.450494 | 5.1:+80855378 | MS.gene77001:CDS |
| ATATCAAGGGATTGTCAAGT+TGG | 0.454048 | 5.1:+80855574 | MS.gene77001:CDS |
| CCGATAGTACTTCTTGCAAA+TGG | 0.455284 | 5.1:-80858378 | None:intergenic |
| GATCTGAGGAGCAGGAATCT+TGG | 0.455601 | 5.1:-80852868 | None:intergenic |
| ACGGGACTAGTTCCTCTAAC+TGG | 0.457103 | 5.1:-80853104 | None:intergenic |
| CAACAACAGCAAGGGATGAC+TGG | 0.460626 | 5.1:+80854096 | MS.gene77001:CDS |
| TGCTGGTTCTGATTCACTGC+GGG | 0.462522 | 5.1:-80853419 | None:intergenic |
| GAAAGTCAAACTCCTAGAAA+AGG | 0.462697 | 5.1:+80861975 | MS.gene77001:CDS |
| CCATCTGATACTTCTGTCAA+TGG | 0.464502 | 5.1:+80853188 | MS.gene77001:CDS |
| AGGGATTGTCAAGTTGGAAC+AGG | 0.467674 | 5.1:+80855580 | MS.gene77001:CDS |
| GCAGATGTTGTAATTGCAAC+GGG | 0.468123 | 5.1:-80853122 | None:intergenic |
| GAGCTGAAAAGTGGGGTGCT+TGG | 0.470554 | 5.1:-80861732 | None:intergenic |
| GGTGGTTGTGCTTCTCGAGC+AGG | 0.471791 | 5.1:-80861849 | None:intergenic |
| CATGGAGGTTGGTGCTGACC+TGG | 0.473770 | 5.1:-80853485 | None:intergenic |
| GGTTCTGATTCACTGCGGGC+TGG | 0.475740 | 5.1:-80853415 | None:intergenic |
| TCTCCACAGTCCCGTAACTT+GGG | 0.476223 | 5.1:+80853962 | MS.gene77001:CDS |
| ATGAGATGCTTCTCCAAGAC+TGG | 0.476986 | 5.1:-80854225 | None:intergenic |
| AATATCATCATTTGTGTCAA+AGG | 0.479869 | 5.1:-80860319 | None:intergenic |
| CAGCAAGGGATGACTGGATC+TGG | 0.480473 | 5.1:+80854102 | MS.gene77001:CDS |
| TGCAGGTCGGCCACCAAGGC+CGG | 0.480504 | 5.1:+80854146 | MS.gene77001:CDS |
| AGCAACAGAAGCTGATAAGA+AGG | 0.481859 | 5.1:+80854299 | MS.gene77001:CDS |
| GTCTGAGTCATTCTTGGCCA+TGG | 0.484970 | 5.1:-80853503 | None:intergenic |
| CCTGATATACCCACGACTAC+TGG | 0.485235 | 5.1:+80853927 | MS.gene77001:CDS |
| TCAGATGGAGGGACAGCAGC+CGG | 0.485842 | 5.1:-80854165 | None:intergenic |
| GCAAAATTGATCTGAGGAGC+AGG | 0.486606 | 5.1:-80852876 | None:intergenic |
| GCATCGAACAGATCCACATT+AGG | 0.489829 | 5.1:-80852450 | None:intergenic |
| GAGAGAGAGCTTGATGGAGC+TGG | 0.490771 | 5.1:+80861594 | MS.gene77001:CDS |
| CGGCTTCGACACCGCTGATA+CGG | 0.491132 | 5.1:-80852506 | None:intergenic |
| ACATTAGTGGAGCTACCCTT+TGG | 0.492253 | 5.1:+80855805 | MS.gene77001:CDS |
| CAATCGTCTTAACGAGATCA+TGG | 0.493342 | 5.1:+80855224 | MS.gene77001:CDS |
| ACAAATCAGAGTGGTTTCCT+AGG | 0.493644 | 5.1:+80852741 | MS.gene77001:CDS |
| GCAGAGGAAGTTGCAGGGCG+AGG | 0.497618 | 5.1:-80853035 | None:intergenic |
| TGATTTGGAAGAGGTCCCCT+TGG | 0.497681 | 5.1:-80852939 | None:intergenic |
| GCAGGAATCTTGGATGCAGC+TGG | 0.500240 | 5.1:-80852858 | None:intergenic |
| AGTTACGGGACTGTGGAGAT+TGG | 0.501659 | 5.1:-80853958 | None:intergenic |
| GGGCGAGGTCCAGCAACAGC+AGG | 0.502117 | 5.1:-80853020 | None:intergenic |
| AAGTAGACAGAGATAGAGAT+GGG | 0.506112 | 5.1:+80853558 | MS.gene77001:CDS |
| GAAGCCGTCTCTTTCTTCCA+AGG | 0.506715 | 5.1:+80852522 | MS.gene77001:CDS |
| GTAACTTGGGGAAATCAGTC+AGG | 0.510887 | 5.1:+80853975 | MS.gene77001:CDS |
| ACGGCCGTCACGATCCAAAT+CGG | 0.514554 | 5.1:-80852487 | None:intergenic |
| AGCCACATTCCGTGACATAC+AGG | 0.515862 | 5.1:+80855431 | MS.gene77001:CDS |
| ACGGGACTGTGGAGATTGGC+AGG | 0.518404 | 5.1:-80853954 | None:intergenic |
| GGCTGGTTCTGCTGAAGATG+TGG | 0.520077 | 5.1:-80853398 | None:intergenic |
| TGGTGGTCCTAATAGAACTC+TGG | 0.520901 | 5.1:-80853331 | None:intergenic |
| GCAGCTCCTTCTTGGATACC+AGG | 0.522331 | 5.1:-80856750 | None:intergenic |
| GATAGAGATGGGAAAATCAC+CGG | 0.522378 | 5.1:+80853569 | MS.gene77001:CDS |
| TATCATTATCTTGATCAGAT+AGG | 0.525293 | 5.1:-80853806 | None:intergenic |
| CAAGTTCCTCGCCTGTTCCC+CGG | 0.525330 | 5.1:-80853588 | None:intergenic |
| GATGATATTGATTCAGTTTG+GGG | 0.529758 | 5.1:+80860333 | MS.gene77001:CDS |
| GCGCCTGAACCGAGGCATGC+TGG | 0.535855 | 5.1:-80853436 | None:intergenic |
| ACCTGGAAGTCCAGATGAAG+TGG | 0.536534 | 5.1:-80853468 | None:intergenic |
| TCATTCTTGGCCATGGAGGT+TGG | 0.537057 | 5.1:-80853496 | None:intergenic |
| CTTGGTGGCCGACCTGCAGT+AGG | 0.537174 | 5.1:-80854141 | None:intergenic |
| CCTAAAAGGCCCAGAGCCAA+AGG | 0.538643 | 5.1:-80861943 | None:intergenic |
| CGGACAGAATCAAATCGTAC+TGG | 0.538647 | 5.1:-80861870 | None:intergenic |
| TGTACCTAATGGAGCGACAC+AGG | 0.539980 | 5.1:+80853862 | MS.gene77001:CDS |
| GAATTGCTTGAGCTGAAAAG+TGG | 0.541819 | 5.1:-80861741 | None:intergenic |
| CGAGGGATGTTGCCAAACCC+AGG | 0.542350 | 5.1:-80853062 | None:intergenic |
| GCTGTCCCTCCATCTGATGA+AGG | 0.542889 | 5.1:+80854171 | MS.gene77001:CDS |
| ATGGTTAAAGCTGCATTGTA+TGG | 0.543633 | 5.1:+80852834 | MS.gene77001:CDS |
| CACCTGTATGTCACGGAATG+TGG | 0.543777 | 5.1:-80855433 | None:intergenic |
| AGCAGATGAAGTAGGTGTGA+GGG | 0.544055 | 5.1:-80853159 | None:intergenic |
| TACTATCGGAAGTCCGCATA+GGG | 0.544690 | 5.1:+80858392 | MS.gene77001:CDS |
| GAAGTAGACAGAGATAGAGA+TGG | 0.545228 | 5.1:+80853557 | MS.gene77001:CDS |
| TTGGTTAGGCTGAGATGAGG+TGG | 0.547246 | 5.1:-80853255 | None:intergenic |
| CGTTAAGACGATTGTCGCAT+CGG | 0.548638 | 5.1:-80855215 | None:intergenic |
| TGCGCATCATCTTGATTATG+GGG | 0.550029 | 5.1:-80858462 | None:intergenic |
| CAATTCCCCACAAAGGCCTA+AGG | 0.552104 | 5.1:+80861758 | MS.gene77001:CDS |
| CTGCAAAGAATCAGGGGTGG+TGG | 0.555519 | 5.1:-80853348 | None:intergenic |
| ATCATCAAAACTGAATCCAC+TGG | 0.556026 | 5.1:-80861703 | None:intergenic |
| ACAAAGGCCTAAGGACTGGT+TGG | 0.558742 | 5.1:+80861767 | MS.gene77001:CDS |
| GTGAGGTCTGCAAAGAATCA+GGG | 0.561557 | 5.1:-80853355 | None:intergenic |
| CCCCACAAAGGCCTAAGGAC+TGG | 0.563143 | 5.1:+80861763 | MS.gene77001:CDS |
| AATTGCTTGAGCTGAAAAGT+GGG | 0.564157 | 5.1:-80861740 | None:intergenic |
| CTGCACCAAATCTTGGACCA+AGG | 0.564231 | 5.1:+80852922 | MS.gene77001:CDS |
| GCCATTGTTCCTGTATCTGG+AGG | 0.564521 | 5.1:+80853305 | MS.gene77001:CDS |
| GAGTTCCTTCATCAGATGGA+GGG | 0.565966 | 5.1:-80854176 | None:intergenic |
| AGCAGATGTTGTAATTGCAA+CGG | 0.567076 | 5.1:-80853123 | None:intergenic |
| TTTCTTGCACCTGTATGTCA+CGG | 0.569492 | 5.1:-80855440 | None:intergenic |
| AAATCACCGGGGAACAGGCG+AGG | 0.571813 | 5.1:+80853582 | MS.gene77001:CDS |
| GGGTAGCTCCACTAATGTCG+TGG | 0.572123 | 5.1:-80855800 | None:intergenic |
| TGCACCAAATCTTGGACCAA+GGG | 0.573715 | 5.1:+80852923 | MS.gene77001:CDS |
| ATGGGGTGAGCTATCTTCAC+CGG | 0.575494 | 5.1:-80858445 | None:intergenic |
| CTAAAAGGCCCAGAGCCAAA+GGG | 0.576310 | 5.1:-80861942 | None:intergenic |
| AAATACTGATGACACTGTAC+AGG | 0.576435 | 5.1:+80855607 | MS.gene77001:CDS |
| AGATTTGGTGCAGCGGATGG+GGG | 0.577211 | 5.1:-80852912 | None:intergenic |
| GGCAGGTTGACCAGTAGTCG+TGG | 0.577515 | 5.1:-80853937 | None:intergenic |
| TGTAGAACTCTGCACGACCT+AGG | 0.577556 | 5.1:-80852758 | None:intergenic |
| AGGAGCTGCTGATTGGGATG+AGG | 0.578287 | 5.1:+80856764 | MS.gene77001:CDS |
| CTACTGCAGGTCGGCCACCA+AGG | 0.578288 | 5.1:+80854142 | MS.gene77001:CDS |
| TGAGTTCCTTCATCAGATGG+AGG | 0.578889 | 5.1:-80854177 | None:intergenic |
| CCATTTGCAAGAAGTACTAT+CGG | 0.579047 | 5.1:+80858378 | MS.gene77001:CDS |
| TCTTGCATATGCAGTGATCA+TGG | 0.583093 | 5.1:+80860240 | MS.gene77001:intron |
| GTACTATCGGAAGTCCGCAT+AGG | 0.583487 | 5.1:+80858391 | MS.gene77001:CDS |
| AATCCTTTAGGCTGGCAACC+TGG | 0.583706 | 5.1:+80856732 | MS.gene77001:intron |
| CGACAACTCAATCCTACTGC+AGG | 0.587143 | 5.1:+80854129 | MS.gene77001:CDS |
| AGTCCTTGAGTGGGTACTAA+CGG | 0.589202 | 5.1:-80852996 | None:intergenic |
| CAGGTCAGCACCAACCTCCA+TGG | 0.589916 | 5.1:+80853486 | MS.gene77001:CDS |
| TTTATAATAAAAGTGATGAT+GGG | 0.590028 | 5.1:+80858331 | MS.gene77001:CDS |
| TACCTCCTTAGTGATGCTAC+TGG | 0.590533 | 5.1:-80860364 | None:intergenic |
| ATAGAGATGGGAAAATCACC+GGG | 0.590747 | 5.1:+80853570 | MS.gene77001:CDS |
| CAATGCCAGTAGCATCACTA+AGG | 0.592229 | 5.1:+80860359 | MS.gene77001:CDS |
| GTCGTCGTCAGCGCCTAATG+TGG | 0.592825 | 5.1:+80852437 | MS.gene77001:CDS |
| GATCAAAATCCGCACTGCTG+CGG | 0.595149 | 5.1:-80861890 | None:intergenic |
| GGTGAGCTCTGACCTGAGCA+AGG | 0.596646 | 5.1:-80852566 | None:intergenic |
| CCTCAGACTACAAATGAACA+GGG | 0.596661 | 5.1:+80858291 | MS.gene77001:CDS |
| GAATCAGAACCAGCATGCCT+CGG | 0.597210 | 5.1:+80853427 | MS.gene77001:CDS |
| GCCAAACCCAGGGAAGGCAG+AGG | 0.597524 | 5.1:-80853051 | None:intergenic |
| CCATTGTTCCTGTATCTGGA+GGG | 0.597602 | 5.1:+80853306 | MS.gene77001:CDS |
| CATTAAAACATCTTCACCAC+AGG | 0.599364 | 5.1:+80861659 | MS.gene77001:CDS |
| TTCCCCAAGTTACGGGACTG+TGG | 0.600739 | 5.1:-80853965 | None:intergenic |
| TGAGTGGGTACTAACGGAGT+TGG | 0.601736 | 5.1:-80852990 | None:intergenic |
| GCTGAGAGGACGTTCCTCGA+GGG | 0.602882 | 5.1:-80853079 | None:intergenic |
| CCCTCCAGATACAGGAACAA+TGG | 0.608380 | 5.1:-80853306 | None:intergenic |
| GGCTTACTAGCAGATGAAGT+AGG | 0.608782 | 5.1:-80853167 | None:intergenic |
| GGATCCGAGTCATCAAAAGC+AGG | 0.609531 | 5.1:-80861921 | None:intergenic |
| TGGCAACCTGGTATCCAAGA+AGG | 0.611414 | 5.1:+80856744 | MS.gene77001:CDS |
| GGAAGGCAGAGGAAGTTGCA+GGG | 0.616343 | 5.1:-80853040 | None:intergenic |
| GATGTTGCCAAACCCAGGGA+AGG | 0.618111 | 5.1:-80853057 | None:intergenic |
| AAAGGTGTTCAACAACAGCA+AGG | 0.619122 | 5.1:+80854087 | MS.gene77001:intron |
| TGGTCAAATCTCTAAATGAA+CGG | 0.619830 | 5.1:+80855749 | MS.gene77001:CDS |
| CTCCACAGTCCCGTAACTTG+GGG | 0.620807 | 5.1:+80853963 | MS.gene77001:CDS |
| GAGGGATGTTGCCAAACCCA+GGG | 0.623749 | 5.1:-80853061 | None:intergenic |
| ATATTATTTGGAAGTACACT+CGG | 0.624624 | 5.1:-80853900 | None:intergenic |
| AACAGAGTGAGTAGCAAGTG+AGG | 0.625475 | 5.1:-80853372 | None:intergenic |
| ACTACAAATGAACAGGGAGT+AGG | 0.626388 | 5.1:+80858297 | MS.gene77001:CDS |
| CATATTAGGCGCCTGAACCG+AGG | 0.630352 | 5.1:-80853444 | None:intergenic |
| GGTAGCTCCACTAATGTCGT+GGG | 0.630673 | 5.1:-80855799 | None:intergenic |
| GATCTCTTCCAGAAGACCAG+TGG | 0.630983 | 5.1:+80861687 | MS.gene77001:CDS |
| TGGTCCAAGATTTGGTGCAG+CGG | 0.631998 | 5.1:-80852919 | None:intergenic |
| GTACCTAATGGAGCGACACA+GGG | 0.632242 | 5.1:+80853863 | MS.gene77001:CDS |
| AACAGCAGGAAGTCCTTGAG+TGG | 0.632405 | 5.1:-80853006 | None:intergenic |
| CCATTGACAGAAGTATCAGA+TGG | 0.632665 | 5.1:-80853188 | None:intergenic |
| TGGAAGAGATCAGCAGCCTG+TGG | 0.635908 | 5.1:-80861675 | None:intergenic |
| TGCCAGTAGCATCACTAAGG+AGG | 0.638921 | 5.1:+80860362 | MS.gene77001:CDS |
| GATCGTGACGGCCGTATCAG+CGG | 0.640276 | 5.1:+80852495 | MS.gene77001:CDS |
| GCAGGTTGACCAGTAGTCGT+GGG | 0.641024 | 5.1:-80853936 | None:intergenic |
| ATGGCAGATGAAAATCCTTG+TGG | 0.642661 | 5.1:-80853287 | None:intergenic |
| CTTAGTTGGCAATTACCAAG+AGG | 0.644602 | 5.1:+80853614 | MS.gene77001:CDS |
| TCCAAAACAAAAGCAACCAA+AGG | 0.646452 | 5.1:+80858191 | MS.gene77001:CDS |
| ACTCCGTTAGTACCCACTCA+AGG | 0.648860 | 5.1:+80852993 | MS.gene77001:CDS |
| AGCTGAGAGGACGTTCCTCG+AGG | 0.650238 | 5.1:-80853080 | None:intergenic |
| CTAATGGAGCGACACAGGGA+GGG | 0.650249 | 5.1:+80853867 | MS.gene77001:CDS |
| TAGCAGATGAAGTAGGTGTG+AGG | 0.650449 | 5.1:-80853160 | None:intergenic |
| GATAACTGCTGATAAACATG+AGG | 0.651599 | 5.1:+80855251 | MS.gene77001:CDS |
| TGAGTCATTCTTGGCCATGG+AGG | 0.652802 | 5.1:-80853500 | None:intergenic |
| GCAGATGAAGTAGGTGTGAG+GGG | 0.653221 | 5.1:-80853158 | None:intergenic |
| CCTGGAAGTCCAGATGAAGT+GGG | 0.654464 | 5.1:-80853467 | None:intergenic |
| CGTGCCGATTTGGATCGTGA+CGG | 0.655206 | 5.1:+80852483 | MS.gene77001:CDS |
| AACCAAAACAATTCTCCACA+AGG | 0.655827 | 5.1:+80853272 | MS.gene77001:CDS |
| AAGGTGTTCAACAACAGCAA+GGG | 0.657190 | 5.1:+80854088 | MS.gene77001:intron |
| CAGAATTGATGCGATCAGCA+CGG | 0.657300 | 5.1:-80855714 | None:intergenic |
| GTGGCAGCAAAATTGATCTG+AGG | 0.657933 | 5.1:-80852882 | None:intergenic |
| AATGAACAGGGAGTAGGCAA+CGG | 0.658714 | 5.1:+80858303 | MS.gene77001:CDS |
| TCCTCTAACTGGTAGCTGAG+AGG | 0.659362 | 5.1:-80853093 | None:intergenic |
| TGAGGTCTGCAAAGAATCAG+GGG | 0.662290 | 5.1:-80853354 | None:intergenic |
| ACAGAATCAAATCGTACTGG+TGG | 0.662330 | 5.1:-80861867 | None:intergenic |
| CCAGTCCTTAGGCCTTTGTG+GGG | 0.664751 | 5.1:-80861763 | None:intergenic |
| TGATTCTGTCCGCAGCAGTG+CGG | 0.668650 | 5.1:+80861881 | MS.gene77001:CDS |
| CACGATCCAAATCGGCACGA+CGG | 0.668945 | 5.1:-80852479 | None:intergenic |
| GCACCAAATCTTGGACCAAG+GGG | 0.671748 | 5.1:+80852924 | MS.gene77001:CDS |
| GCTCAAGCAATTCCCCACAA+AGG | 0.672099 | 5.1:+80861751 | MS.gene77001:CDS |
| TTTGCAAACACAAATCAGAG+TGG | 0.673304 | 5.1:+80852732 | MS.gene77001:CDS |
| GTCTTAACGAGATCATGGAA+AGG | 0.674758 | 5.1:+80855229 | MS.gene77001:CDS |
| GGAACCTTGGAAGAAAGAGA+CGG | 0.675530 | 5.1:-80852526 | None:intergenic |
| ATGATGCGCAAGAAACCCGA+AGG | 0.676390 | 5.1:+80858475 | MS.gene77001:CDS |
| TGTATCATCCAAGTTGACAA+CGG | 0.678444 | 5.1:+80855404 | MS.gene77001:CDS |
| ATGCTGGTTCTGATTCACTG+CGG | 0.680916 | 5.1:-80853420 | None:intergenic |
| CCTAATGGAGCGACACAGGG+AGG | 0.684964 | 5.1:+80853866 | MS.gene77001:CDS |
| ACAGCAGGAAGTCCTTGAGT+GGG | 0.686377 | 5.1:-80853005 | None:intergenic |
| AACTCAATCCTACTGCAGGT+CGG | 0.706126 | 5.1:+80854133 | MS.gene77001:CDS |
| GGGTTTGGCAACATCCCTCG+AGG | 0.712673 | 5.1:+80853065 | MS.gene77001:CDS |
| ATCATCCAAGTTGACAACGG+AGG | 0.723347 | 5.1:+80855407 | MS.gene77001:CDS |
| GAATCAACAAAGTCCCTATG+CGG | 0.723875 | 5.1:-80858405 | None:intergenic |
| GGTCTGCAAAGAATCAGGGG+TGG | 0.737761 | 5.1:-80853351 | None:intergenic |
| ATTGCTTGAGCTGAAAAGTG+GGG | 0.763163 | 5.1:-80861739 | None:intergenic |
| TAGAGATGGGAAAATCACCG+GGG | 0.788722 | 5.1:+80853571 | MS.gene77001:CDS |
| TGCATATGCAGTGATCATGG+TGG | 0.802888 | 5.1:+80860243 | MS.gene77001:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 80852423 | 80862022 | 80852423 | ID=MS.gene77001 |
| chr5.1 | mRNA | 80852423 | 80862022 | 80852423 | ID=MS.gene77001.t1;Parent=MS.gene77001 |
| chr5.1 | exon | 80852423 | 80852575 | 80852423 | ID=MS.gene77001.t1.exon1;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80852423 | 80852575 | 80852423 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80852723 | 80853635 | 80852723 | ID=MS.gene77001.t1.exon2;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80852723 | 80853635 | 80852723 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80853784 | 80853996 | 80853784 | ID=MS.gene77001.t1.exon3;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80853784 | 80853996 | 80853784 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80854091 | 80854320 | 80854091 | ID=MS.gene77001.t1.exon4;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80854091 | 80854320 | 80854091 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80854697 | 80854771 | 80854697 | ID=MS.gene77001.t1.exon5;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80854697 | 80854771 | 80854697 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80855201 | 80855272 | 80855201 | ID=MS.gene77001.t1.exon6;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80855201 | 80855272 | 80855201 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80855354 | 80855452 | 80855354 | ID=MS.gene77001.t1.exon7;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80855354 | 80855452 | 80855354 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80855557 | 80855628 | 80855557 | ID=MS.gene77001.t1.exon8;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80855557 | 80855628 | 80855557 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80855712 | 80855826 | 80855712 | ID=MS.gene77001.t1.exon9;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80855712 | 80855826 | 80855712 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80856742 | 80856810 | 80856742 | ID=MS.gene77001.t1.exon10;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80856742 | 80856810 | 80856742 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80858139 | 80858496 | 80858139 | ID=MS.gene77001.t1.exon11;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80858139 | 80858496 | 80858139 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80860254 | 80860383 | 80860254 | ID=MS.gene77001.t1.exon12;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80860254 | 80860383 | 80860254 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| chr5.1 | exon | 80861594 | 80862022 | 80861594 | ID=MS.gene77001.t1.exon13;Parent=MS.gene77001.t1 |
| chr5.1 | CDS | 80861594 | 80862022 | 80861594 | ID=cds.MS.gene77001.t1;Parent=MS.gene77001.t1 |
| Gene Sequence |
| Protein sequence |
