AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77006

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77006.t1 MTR_4g029620 81.481 243 35 2 1 233 1 243 1.26e-93 280
MS.gene77006.t1 MTR_4g029620 84.186 215 29 1 26 235 116 330 3.51e-76 235
MS.gene77006.t1 MTR_4g029620 82.648 219 28 2 25 233 140 358 3.56e-75 232
MS.gene77006.t1 MTR_4g029620 83.645 214 30 1 25 233 105 318 5.20e-75 232
MS.gene77006.t1 MTR_4g029620 80.543 221 33 2 25 235 130 350 1.83e-73 228
MS.gene77006.t1 MTR_4g029620 79.452 219 35 2 26 234 161 379 3.62e-71 222
MS.gene77006.t1 MTR_4g029620 74.667 150 33 1 25 174 235 379 1.72e-40 142
MS.gene77006.t1 MTR_4g029550 90.336 238 18 1 1 233 1 238 4.24e-91 271
MS.gene77006.t1 MTR_4g029550 91.667 216 13 1 26 236 96 311 1.30e-86 259
MS.gene77006.t1 MTR_4g029550 81.818 66 7 1 25 90 250 310 5.71e-14 70.1
MS.gene77006.t1 MTR_4g029600 86.307 241 8 3 1 236 1 221 1.09e-85 254
MS.gene77006.t1 MTR_4g029630 76.037 217 47 1 22 233 1 217 1.65e-69 213
MS.gene77006.t1 MTR_6g011410 43.396 159 90 0 38 196 69 227 3.31e-33 120
MS.gene77006.t1 MTR_6g011410 43.396 159 90 0 48 206 69 227 5.64e-33 120
MS.gene77006.t1 MTR_6g011410 42.331 163 92 1 24 186 67 227 1.34e-32 119
MS.gene77006.t1 MTR_6g011410 43.396 159 90 0 63 221 69 227 3.63e-32 118
MS.gene77006.t1 MTR_6g011410 43.871 155 87 0 37 191 73 227 9.85e-32 117
MS.gene77006.t1 MTR_6g011410 43.871 155 87 0 62 216 73 227 1.59e-31 116
MS.gene77006.t1 MTR_6g011410 43.871 155 87 0 72 226 73 227 1.84e-31 116
MS.gene77006.t1 MTR_6g011410 44.156 154 86 0 77 230 73 226 2.23e-31 115
MS.gene77006.t1 MTR_6g011410 43.871 155 87 0 57 211 73 227 2.53e-31 115
MS.gene77006.t1 MTR_6g011410 43.506 154 87 0 82 235 73 226 3.07e-31 115
MS.gene77006.t1 MTR_6g011410 42.138 159 92 0 23 181 69 227 3.27e-31 115
MS.gene77006.t1 MTR_6g011410 43.871 155 87 0 47 201 73 227 1.90e-30 113
MS.gene77006.t1 MTR_6g011410 43.357 143 81 0 93 235 69 211 7.78e-28 106
MS.gene77006.t1 MTR_4g029760 47.321 112 50 3 1 112 1 103 4.73e-17 74.7
MS.gene77006.t1 MTR_3g415650 49.474 95 46 1 1 93 1 95 2.02e-15 70.1
MS.gene77006.t1 MTR_4g029770 43.519 108 40 4 1 99 1 96 1.64e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77006.t1 AT3G22142 51.244 201 98 0 24 224 1101 1301 1.45e-49 174
MS.gene77006.t1 AT3G22142 50.244 205 102 0 25 229 1097 1301 4.66e-49 172
MS.gene77006.t1 AT3G22142 50.754 199 98 0 33 231 1100 1298 6.73e-48 169
MS.gene77006.t1 AT3G22142 47.368 228 104 1 24 235 1065 1292 1.20e-47 168
MS.gene77006.t1 AT3G22142 50.754 199 98 0 35 233 1097 1295 1.67e-47 168
MS.gene77006.t1 AT3G22142 48.661 224 99 1 29 236 1050 1273 1.96e-47 168
MS.gene77006.t1 AT3G22142 46.215 251 94 2 24 233 995 1245 2.16e-47 168
MS.gene77006.t1 AT3G22142 46.983 232 103 1 24 235 1161 1392 3.57e-47 167
MS.gene77006.t1 AT3G22142 46.983 232 103 1 24 235 1126 1357 2.18e-46 165
MS.gene77006.t1 AT3G22142 44.961 258 99 3 21 235 1005 1262 3.54e-46 164
MS.gene77006.t1 AT3G22142 46.552 232 104 1 24 235 1136 1367 4.33e-46 164
MS.gene77006.t1 AT3G22142 45.690 232 106 1 24 235 1111 1342 5.84e-46 164
MS.gene77006.t1 AT3G22142 46.552 232 104 1 24 235 1151 1382 1.91e-45 162
MS.gene77006.t1 AT3G22142 46.352 233 103 2 21 231 1141 1373 2.38e-45 162
MS.gene77006.t1 AT3G22142 46.473 241 98 2 24 233 985 1225 5.67e-45 160
MS.gene77006.t1 AT3G22142 47.032 219 101 1 24 227 1176 1394 9.17e-42 151
MS.gene77006.t1 AT3G22142 42.537 268 98 3 24 235 880 1147 3.55e-39 144
MS.gene77006.t1 AT3G22142 40.794 277 98 3 25 235 916 1192 8.95e-39 143
MS.gene77006.t1 AT3G22142 51.196 209 102 0 24 232 1186 1394 1.28e-38 142
MS.gene77006.t1 AT3G22142 40.000 275 100 3 26 235 572 846 6.68e-38 140
MS.gene77006.t1 AT3G22142 40.659 273 101 3 24 235 890 1162 2.40e-37 139
MS.gene77006.t1 AT3G22142 39.781 274 100 3 27 235 508 781 3.56e-37 138
MS.gene77006.t1 AT3G22142 39.855 276 101 3 25 235 666 941 1.08e-36 137
MS.gene77006.t1 AT3G22142 42.802 257 96 3 27 232 908 1164 1.64e-36 136
MS.gene77006.t1 AT3G22142 45.495 222 101 1 24 225 625 846 2.44e-36 136
MS.gene77006.t1 AT3G22142 38.971 272 101 3 24 230 510 781 3.87e-36 135
MS.gene77006.t1 AT3G22142 38.909 275 103 3 26 235 517 791 4.38e-36 135
MS.gene77006.t1 AT3G22142 40.221 271 102 3 25 235 501 771 4.64e-36 135
MS.gene77006.t1 AT3G22142 39.416 274 101 3 27 235 673 946 5.06e-36 135
MS.gene77006.t1 AT3G22142 40.074 272 103 3 24 235 530 801 9.10e-36 134
MS.gene77006.t1 AT3G22142 38.909 275 103 3 24 233 520 794 9.28e-36 134
MS.gene77006.t1 AT3G22142 38.909 275 103 3 24 233 640 914 1.11e-35 134
MS.gene77006.t1 AT3G22142 37.906 277 107 3 24 235 685 961 4.16e-35 132
MS.gene77006.t1 AT3G22142 38.929 280 101 3 24 233 630 909 5.23e-35 132
MS.gene77006.t1 AT3G22142 43.902 246 92 3 34 233 875 1120 5.23e-35 132
MS.gene77006.t1 AT3G22142 38.462 273 103 3 24 231 675 947 7.05e-35 132
MS.gene77006.t1 AT3G22142 37.979 287 103 3 24 235 735 1021 1.02e-34 131
MS.gene77006.t1 AT3G22142 37.979 287 103 3 24 235 745 1031 1.97e-34 130
MS.gene77006.t1 AT3G22142 38.710 279 101 3 27 235 758 1036 2.95e-34 130
MS.gene77006.t1 AT3G22142 42.692 260 94 3 26 230 822 1081 1.00e-33 128
MS.gene77006.t1 AT3G22142 38.519 270 91 3 36 230 452 721 2.12e-33 127
MS.gene77006.t1 AT3G22142 37.868 272 104 3 24 230 695 966 4.93e-33 126
MS.gene77006.t1 AT3G22142 35.762 302 104 4 24 235 455 756 6.57e-33 126
MS.gene77006.t1 AT3G22142 36.688 308 99 5 24 235 830 1137 2.59e-32 124
MS.gene77006.t1 AT3G22142 41.538 260 92 3 36 235 822 1081 4.89e-32 124
MS.gene77006.t1 AT3G22142 37.710 297 100 4 24 235 415 711 5.03e-32 124
MS.gene77006.t1 AT3G22142 37.209 301 99 4 25 235 401 701 8.29e-32 123
MS.gene77006.t1 AT3G22142 38.745 271 104 4 25 235 328 596 2.45e-31 121
MS.gene77006.t1 AT3G22142 34.385 317 103 4 24 235 375 691 2.67e-29 115
MS.gene77006.t1 AT3G22142 33.548 310 106 4 24 233 350 659 4.30e-28 112
MS.gene77006.t1 AT3G22142 34.194 310 104 5 24 233 355 664 4.59e-28 112
MS.gene77006.t1 AT3G22142 33.333 288 108 7 29 235 247 531 5.59e-22 94.7
MS.gene77006.t1 AT3G22142 38.528 231 104 3 34 226 202 432 9.92e-21 91.3
MS.gene77006.t1 AT3G22142 41.256 223 112 4 29 235 202 421 5.64e-16 77.4
MS.gene77006.t1 AT1G54970 45.918 196 81 9 1 189 3 180 7.27e-22 92.4
MS.gene77006.t1 AT1G54970 53.548 155 62 7 86 236 29 177 1.66e-19 85.9

Find 96 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGACTGGAGGTTTCTCAAC+TGG 0.297152 4.2:+74587726 None:intergenic
AACCGGAGGCTTGTCATAAT+TGG 0.298691 4.2:+74588283 None:intergenic
GTCGAGAAGCCACCAGTTTA+CGG 0.299440 4.2:-74587678 MS.gene77006:CDS
TGCTCTCTTTGTCATCCCTC+AGG 0.337569 4.2:-74588312 MS.gene77006:CDS
ACTACTGGTGGCTTGTAAAC+TGG 0.353333 4.2:+74588026 None:intergenic
ACTACTGGTGGCTTGTAAAC+TGG 0.391650 4.2:+74587846 None:intergenic
TATACCGGAGGCTTGTAAAC+TGG 0.399665 4.2:+74588056 None:intergenic
TCAACTGGTGGCTTGTAGAC+TGG 0.401548 4.2:+74587981 None:intergenic
TACACCGGTGGTTGGTAAAC+CGG 0.401947 4.2:+74588266 None:intergenic
TCAACTGGTGGCTTGTAAAC+AGG 0.402499 4.2:+74587906 None:intergenic
TACACAGGTGGCTTCTCTAC+AGG 0.405035 4.2:+74588206 None:intergenic
CTCAACTGGAGGCTTGTAAA+CGG 0.405571 4.2:+74587785 None:intergenic
TAAACAGGAGGTTTGTAAAC+CGG 0.417330 4.2:+74588116 None:intergenic
TACACCGGTGGCTTGTAAAC+AGG 0.419007 4.2:+74588101 None:intergenic
TAGACTGGAGGCTTCTCAAC+TGG 0.423306 4.2:+74587771 None:intergenic
AGACTGGAGGTTTCTCAACT+GGG 0.425047 4.2:+74587727 None:intergenic
TAGACCGGAGGTTTCTCAAC+TGG 0.426938 4.2:+74588236 None:intergenic
TGGTGAGGAGGTCCGTAAAC+TGG 0.427954 4.2:+74587666 None:intergenic
TAAACAGGAGGCTTGTAAAC+AGG 0.429228 4.2:+74587921 None:intergenic
TAAACTGGTGGCTTCTCGAC+TGG 0.430061 4.2:+74587681 None:intergenic
TAGACTGGAGGCTTCTCAAC+TGG 0.434291 4.2:+74587966 None:intergenic
TCGACTGGAGGCTTGTAAAC+TGG 0.436990 4.2:+74587696 None:intergenic
TACACCGGAGGCTTGTAAAC+AGG 0.441057 4.2:+74587876 None:intergenic
TAAACTGGTGGCTTGTAGAC+TGG 0.441265 4.2:+74587711 None:intergenic
TAAACGGGTGGCTTGTAGAC+TGG 0.441414 4.2:+74587801 None:intergenic
TAAACAGGTGGCTTGTAGAC+TGG 0.443434 4.2:+74587756 None:intergenic
TAAACTGGAGGCTTCTCAAC+TGG 0.456161 4.2:+74588071 None:intergenic
TAAACAGGAGGCTTCTCAAC+TGG 0.459812 4.2:+74587891 None:intergenic
TCAACTGGTGGCTTGTACAC+CGG 0.460751 4.2:+74588086 None:intergenic
TACACCGGTGGCTTGTAGAC+TGG 0.463097 4.2:+74587951 None:intergenic
TATACAGGTGGCTTCACTAC+TGG 0.464722 4.2:+74588011 None:intergenic
GCTCTCTTTGTCATCCCTCA+GGG 0.466378 4.2:-74588311 MS.gene77006:CDS
TCAACTGGTGGCTTATACAC+CGG 0.468440 4.2:+74588251 None:intergenic
TAGACTGGAGGCTTGTATAC+AGG 0.470954 4.2:+74587816 None:intergenic
TAGACTGGAGGCTTGTATAC+AGG 0.470954 4.2:+74587996 None:intergenic
TCAACTGGAGGCTTGTAAAC+GGG 0.476504 4.2:+74587786 None:intergenic
TAAACTGGTGGCTTGTACAC+CGG 0.484891 4.2:+74587861 None:intergenic
GCCTCCTGTTTACAAGCCTC+CGG 0.502841 4.2:-74587880 MS.gene77006:CDS
AAACAGGAGGTTTGTAAACC+GGG 0.508037 4.2:+74588117 None:intergenic
TATACAGGTGGCTTAACTAC+TGG 0.513910 4.2:+74587831 None:intergenic
TACACAGGTGGCTTATACAC+AGG 0.513962 4.2:+74588191 None:intergenic
TGCCAATTATGACAAGCCTC+CGG 0.514734 4.2:-74588285 MS.gene77006:CDS
GCCTCCAGTTTACAAGCCTC+CGG 0.519435 4.2:-74588060 MS.gene77006:CDS
AAGCAGCACAAGGAAGTTTG+AGG 0.519715 4.2:+74588340 None:intergenic
TAAACTGGAGGCTTGTATAC+CGG 0.526226 4.2:+74588041 None:intergenic
TAAACAGGAGGCTTGTACAC+CGG 0.529016 4.2:+74587936 None:intergenic
GACTGGAGGTTTCTCAACTG+GGG 0.534766 4.2:+74587728 None:intergenic
ACACAGGTGGCTTCTCTACA+GGG 0.554240 4.2:+74588207 None:intergenic
GGGAACTATGGGTGGTGAGG+AGG 0.563963 4.2:+74587654 None:intergenic
ACTGGAGGTTTCTCAACTGG+GGG 0.581297 4.2:+74587729 None:intergenic
ACCGGAGGTTTCTCAACTGG+TGG 0.581462 4.2:+74588239 None:intergenic
CGAGGGAACTATGGGTGGTG+AGG 0.583741 4.2:+74587651 None:intergenic
ACCTCCTGTTTACAAGCCAC+CGG 0.585895 4.2:-74588105 MS.gene77006:CDS
GCCTCCAGTCTACAAGCCAC+CGG 0.597241 4.2:-74587955 MS.gene77006:CDS
ACTGGAGGCTTCTCAACTGG+TGG 0.597757 4.2:+74587969 None:intergenic
ACAGGTGGCTTCACTACTGG+TGG 0.613745 4.2:+74588014 None:intergenic
ACTGGTGGCTTCTCGACTGG+AGG 0.616423 4.2:+74587684 None:intergenic
AACAGGAGGTTTGTAAACCG+GGG 0.616438 4.2:+74588118 None:intergenic
GCCACCAGTTGAGAAACCTC+CGG 0.618558 4.2:-74588240 MS.gene77006:CDS
ACTGGTGGCTTGTAGACTGG+AGG 0.619678 4.2:+74587984 None:intergenic
ACTGGAGGCTTGTAAACTGG+TGG 0.629358 4.2:+74587699 None:intergenic
GCCACCTGTGTACAAGCCCC+CGG 0.630519 4.2:-74588180 MS.gene77006:CDS
ACTGGAGGCTTCTCAACTGG+TGG 0.635764 4.2:+74588074 None:intergenic
GTGGCTTATACACCGGTGGT+TGG 0.636457 4.2:+74588258 None:intergenic
TCATAATTGGCAAGACCCTG+AGG 0.637663 4.2:+74588296 None:intergenic
ACCGGTGGCTTGTAAACAGG+AGG 0.639427 4.2:+74588104 None:intergenic
TGAGGAGGTCCGTAAACTGG+TGG 0.639666 4.2:+74587669 None:intergenic
ACAGGAGGCTTCTCAACTGG+TGG 0.640818 4.2:+74587894 None:intergenic
CATAATTGGCAAGACCCTGA+GGG 0.642655 4.2:+74588297 None:intergenic
ACAGGTGGCTTCTCTACAGG+GGG 0.643712 4.2:+74588209 None:intergenic
GCCTCCGGTTTACCAACCAC+CGG 0.644187 4.2:-74588270 MS.gene77006:CDS
ACCGGTGGCTTGTAGACTGG+AGG 0.645740 4.2:+74587954 None:intergenic
ACTGGTGGCTTGTACACCGG+TGG 0.645745 4.2:+74588089 None:intergenic
ACTGGAGGCTTCTCAACTGG+AGG 0.646341 4.2:+74587774 None:intergenic
ACCGGAGGCTTGTAAACTGG+AGG 0.646422 4.2:+74588059 None:intergenic
ACTGGTGGCTTATACACCGG+TGG 0.647306 4.2:+74588254 None:intergenic
ACCGGAGGCTTGTAAACAGG+AGG 0.649300 4.2:+74587879 None:intergenic
ACTGGAGGCTTGTAAACGGG+TGG 0.650242 4.2:+74587789 None:intergenic
ACTGGTGGCTTGTAGACTGG+AGG 0.655799 4.2:+74587714 None:intergenic
ACAGGAGGCTTGTAAACAGG+AGG 0.656540 4.2:+74587924 None:intergenic
CTACCCGAGGGAACTATGGG+TGG 0.657162 4.2:+74587646 None:intergenic
CACAGGTGGCTTCTCTACAG+GGG 0.659499 4.2:+74588208 None:intergenic
ACTGGAGGCTTGTATACAGG+TGG 0.663475 4.2:+74587819 None:intergenic
ACTGGAGGCTTGTATACAGG+TGG 0.663475 4.2:+74587999 None:intergenic
ACAGGTGGCTTAACTACTGG+TGG 0.665885 4.2:+74587834 None:intergenic
ACAGGAGGTTTGTAAACCGG+GGG 0.670551 4.2:+74588119 None:intergenic
ACTGGTGGCTTGTAAACAGG+AGG 0.672730 4.2:+74587909 None:intergenic
ACTGGAGGCTTGTATACCGG+AGG 0.673497 4.2:+74588044 None:intergenic
ACCGGTGGTTGGTAAACCGG+AGG 0.675579 4.2:+74588269 None:intergenic
ACGGGTGGCTTGTAGACTGG+AGG 0.678574 4.2:+74587804 None:intergenic
ACTGGTGGCTTGTAAACTGG+TGG 0.678967 4.2:+74587849 None:intergenic
ACAGGAGGCTTGTACACCGG+TGG 0.679752 4.2:+74587939 None:intergenic
ACTGGTGGCTTGTAAACTGG+AGG 0.680586 4.2:+74588029 None:intergenic
ACAGGTGGCTTGTAGACTGG+AGG 0.680593 4.2:+74587759 None:intergenic
ACTGGTGGCTTGTACACCGG+AGG 0.694758 4.2:+74587864 None:intergenic
ACAGGTGGCTTATACACAGG+TGG 0.704202 4.2:+74588194 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
TAAACAGGAGGTTTGTAAAC+CGG + chr4.2:74587893-74587912 None:intergenic 35.0%
AAACAGGAGGTTTGTAAACC+GGG + chr4.2:74587892-74587911 None:intergenic 40.0%
TAAACAGGAGGCTTGTAAAC+AGG + chr4.2:74588088-74588107 None:intergenic 40.0%
TAAACTGGAGGCTTGTATAC+CGG + chr4.2:74587968-74587987 None:intergenic 40.0%
TATACAGGTGGCTTAACTAC+TGG + chr4.2:74588178-74588197 None:intergenic 40.0%
AACAGGAGGTTTGTAAACCG+GGG + chr4.2:74587891-74587910 None:intergenic 45.0%
AACCGGAGGCTTGTCATAAT+TGG + chr4.2:74587726-74587745 None:intergenic 45.0%
AAGCAGCACAAGGAAGTTTG+AGG + chr4.2:74587669-74587688 None:intergenic 45.0%
AGACTGGAGGTTTCTCAACT+GGG + chr4.2:74588282-74588301 None:intergenic 45.0%
CATAATTGGCAAGACCCTGA+GGG + chr4.2:74587712-74587731 None:intergenic 45.0%
CTCAACTGGAGGCTTGTAAA+CGG + chr4.2:74588224-74588243 None:intergenic 45.0%
GAGCAAAAAGAAGCAGCACA+AGG + chr4.2:74587679-74587698 None:intergenic 45.0%
TAAACAGGAGGCTTCTCAAC+TGG + chr4.2:74588118-74588137 None:intergenic 45.0%
TAAACAGGAGGCTTGTACAC+CGG + chr4.2:74588073-74588092 None:intergenic 45.0%
TAAACTGGAGGCTTCTCAAC+TGG + chr4.2:74587938-74587957 None:intergenic 45.0%
TACACAGGTGGCTTATACAC+AGG + chr4.2:74587818-74587837 None:intergenic 45.0%
TAGACTGGAGGCTTGTATAC+AGG + chr4.2:74588013-74588032 None:intergenic 45.0%
TAGACTGGAGGTTTCTCAAC+TGG + chr4.2:74588283-74588302 None:intergenic 45.0%
TATACAGGTGGCTTCACTAC+TGG + chr4.2:74587998-74588017 None:intergenic 45.0%
TATACCGGAGGCTTGTAAAC+TGG + chr4.2:74587953-74587972 None:intergenic 45.0%
TCAACTGGAGGCTTGTAAAC+GGG + chr4.2:74588223-74588242 None:intergenic 45.0%
TCAACTGGTGGCTTATACAC+CGG + chr4.2:74587758-74587777 None:intergenic 45.0%
TCATAATTGGCAAGACCCTG+AGG + chr4.2:74587713-74587732 None:intergenic 45.0%
TGCCAATTATGACAAGCCTC+CGG - chr4.2:74587721-74587740 MS.gene77006:CDS 45.0%
! ACTACTGGTGGCTTGTAAAC+TGG + chr4.2:74587983-74588002 None:intergenic 45.0%
! TAAACAGGTGGCTTGTAGAC+TGG + chr4.2:74588253-74588272 None:intergenic 45.0%
! TAAACTGGTGGCTTGTACAC+CGG + chr4.2:74588148-74588167 None:intergenic 45.0%
! TAAACTGGTGGCTTGTAGAC+TGG + chr4.2:74588298-74588317 None:intergenic 45.0%
! TACACAGGTGGCTTTTCTAC+CGG + chr4.2:74587848-74587867 None:intergenic 45.0%
! TCAACTGGTGGCTTGTAAAC+AGG + chr4.2:74588103-74588122 None:intergenic 45.0%
AAACCGGGGGTTTCACTACA+GGG + chr4.2:74587877-74587896 None:intergenic 50.0%
ACACAGGTGGCTTCTCTACA+GGG + chr4.2:74587802-74587821 None:intergenic 50.0%
ACAGGAGGCTTGTAAACAGG+AGG + chr4.2:74588085-74588104 None:intergenic 50.0%
ACAGGAGGTTTGTAAACCGG+GGG + chr4.2:74587890-74587909 None:intergenic 50.0%
ACAGGTGGCTTAACTACTGG+TGG + chr4.2:74588175-74588194 None:intergenic 50.0%
ACAGGTGGCTTATACACAGG+TGG + chr4.2:74587815-74587834 None:intergenic 50.0%
ACCTCCTGTTTACAAGCCAC+CGG - chr4.2:74587901-74587920 MS.gene77006:CDS 50.0%
ACTACAGGGGGTTTGTACAC+AGG + chr4.2:74587863-74587882 None:intergenic 50.0%
ACTGGAGGCTTGTAAACTGG+TGG + chr4.2:74588310-74588329 None:intergenic 50.0%
ACTGGAGGCTTGTATACAGG+TGG + chr4.2:74588010-74588029 None:intergenic 50.0%
ACTGGAGGTTTCTCAACTGG+GGG + chr4.2:74588280-74588299 None:intergenic 50.0%
GACTGGAGGTTTCTCAACTG+GGG + chr4.2:74588281-74588300 None:intergenic 50.0%
GCTCTCTTTGTCATCCCTCA+GGG - chr4.2:74587695-74587714 MS.gene77006:CDS 50.0%
GTCGAGAAGCCACCAGTTTA+CGG - chr4.2:74588328-74588347 MS.gene77006:CDS 50.0%
TAAACCGGGGGTTTCACTAC+AGG + chr4.2:74587878-74587897 None:intergenic 50.0%
TAAACTGGTGGCTTCTCGAC+TGG + chr4.2:74588328-74588347 None:intergenic 50.0%
TACACAGGTGGCTTCTCTAC+AGG + chr4.2:74587803-74587822 None:intergenic 50.0%
TACACCGGAGGCTTGTAAAC+AGG + chr4.2:74588133-74588152 None:intergenic 50.0%
TAGACCGGAGGTTTCTCAAC+TGG + chr4.2:74587773-74587792 None:intergenic 50.0%
TAGACTGGAGGCTTCTCAAC+TGG + chr4.2:74588043-74588062 None:intergenic 50.0%
TCAACTGGGGGCTTGTAAAC+AGG + chr4.2:74588268-74588287 None:intergenic 50.0%
TCGACTGGAGGCTTGTAAAC+TGG + chr4.2:74588313-74588332 None:intergenic 50.0%
TCTACAGGGGGTTTGTAGAC+CGG + chr4.2:74587788-74587807 None:intergenic 50.0%
TGCTCTCTTTGTCATCCCTC+AGG - chr4.2:74587694-74587713 MS.gene77006:CDS 50.0%
! ACACAGGTGGCTTTTCTACC+GGG + chr4.2:74587847-74587866 None:intergenic 50.0%
! ACTGGTGGCTTGTAAACAGG+AGG + chr4.2:74588100-74588119 None:intergenic 50.0%
! ACTGGTGGCTTGTAAACTGG+AGG + chr4.2:74587980-74587999 None:intergenic 50.0%
! ACTGGTGGCTTGTAAACTGG+TGG + chr4.2:74587980-74587999 None:intergenic 50.0%
! TAAACGGGTGGCTTGTAGAC+TGG + chr4.2:74588208-74588227 None:intergenic 50.0%
! TACACCGGTGGCTTGTAAAC+AGG + chr4.2:74587908-74587927 None:intergenic 50.0%
! TCAACTGGTGGCTTGTACAC+CGG + chr4.2:74587923-74587942 None:intergenic 50.0%
! TCAACTGGTGGCTTGTAGAC+TGG + chr4.2:74588028-74588047 None:intergenic 50.0%
!! TACACCGGTGGTTGGTAAAC+CGG + chr4.2:74587743-74587762 None:intergenic 50.0%
AACCGGGGGTTTCACTACAG+GGG + chr4.2:74587876-74587895 None:intergenic 55.0%
ACAGGAGGCTTCTCAACTGG+TGG + chr4.2:74588115-74588134 None:intergenic 55.0%
ACAGGGGGTTTGTACACAGG+TGG + chr4.2:74587860-74587879 None:intergenic 55.0%
ACAGGTGGCTTCACTACTGG+TGG + chr4.2:74587995-74588014 None:intergenic 55.0%
ACAGGTGGCTTCTCTACAGG+GGG + chr4.2:74587800-74587819 None:intergenic 55.0%
ACCGGAGGCTTGTAAACAGG+AGG + chr4.2:74588130-74588149 None:intergenic 55.0%
ACCGGAGGCTTGTAAACTGG+AGG + chr4.2:74587950-74587969 None:intergenic 55.0%
ACCGGAGGTTTCTCAACTGG+TGG + chr4.2:74587770-74587789 None:intergenic 55.0%
ACTGGAGGCTTCTCAACTGG+AGG + chr4.2:74587935-74587954 None:intergenic 55.0%
ACTGGAGGCTTCTCAACTGG+TGG + chr4.2:74587935-74587954 None:intergenic 55.0%
ACTGGAGGCTTGTAAACGGG+TGG + chr4.2:74588220-74588239 None:intergenic 55.0%
ACTGGAGGCTTGTATACCGG+AGG + chr4.2:74587965-74587984 None:intergenic 55.0%
ACTGGGGGCTTGTAAACAGG+TGG + chr4.2:74588265-74588284 None:intergenic 55.0%
ACTGGTGGCTTATACACCGG+TGG + chr4.2:74587755-74587774 None:intergenic 55.0%
CACAGGTGGCTTCTCTACAG+GGG + chr4.2:74587801-74587820 None:intergenic 55.0%
GCCACCAGTTGAGAAACCTC+CGG - chr4.2:74587766-74587785 MS.gene77006:CDS 55.0%
GCCTCCAGTTTACAAGCCTC+CGG - chr4.2:74587946-74587965 MS.gene77006:CDS 55.0%
GCCTCCTGTTTACAAGCCTC+CGG - chr4.2:74588081-74588100 MS.gene77006:CDS 55.0%
GTGGCTTATACACCGGTGGT+TGG + chr4.2:74587751-74587770 None:intergenic 55.0%
TGAGGAGGTCCGTAAACTGG+TGG + chr4.2:74588340-74588359 None:intergenic 55.0%
TGGTGAGGAGGTCCGTAAAC+TGG + chr4.2:74588343-74588362 None:intergenic 55.0%
! ACAGGTGGCTTGTAGACTGG+AGG + chr4.2:74588250-74588269 None:intergenic 55.0%
! ACAGGTGGCTTTTCTACCGG+GGG + chr4.2:74587845-74587864 None:intergenic 55.0%
! ACCGGTGGCTTGTAAACAGG+AGG + chr4.2:74587905-74587924 None:intergenic 55.0%
! ACTGGTGGCTTGTAGACTGG+AGG + chr4.2:74588025-74588044 None:intergenic 55.0%
! CACAGGTGGCTTTTCTACCG+GGG + chr4.2:74587846-74587865 None:intergenic 55.0%
! TACACCGGTGGCTTGTAGAC+TGG + chr4.2:74588058-74588077 None:intergenic 55.0%
ACAGGAGGCTTGTACACCGG+TGG + chr4.2:74588070-74588089 None:intergenic 60.0%
ACAGGGGGTTTGTAGACCGG+AGG + chr4.2:74587785-74587804 None:intergenic 60.0%
ACCCCCTGTAGTGAAACCCC+CGG - chr4.2:74587871-74587890 MS.gene77006:CDS 60.0%
ACCGGGGGTTTCACTACAGG+GGG + chr4.2:74587875-74587894 None:intergenic 60.0%
ACTGGTGGCTTCTCGACTGG+AGG + chr4.2:74588325-74588344 None:intergenic 60.0%
GCCTCCAGTCTACAAGCCAC+CGG - chr4.2:74588021-74588040 MS.gene77006:CDS 60.0%
GCCTCCGGTTTACCAACCAC+CGG - chr4.2:74587736-74587755 MS.gene77006:CDS 60.0%
TCTACCGGGGGCTTGTACAC+AGG + chr4.2:74587833-74587852 None:intergenic 60.0%
! ACCGGTGGCTTGTAGACTGG+AGG + chr4.2:74588055-74588074 None:intergenic 60.0%
! ACGGGTGGCTTGTAGACTGG+AGG + chr4.2:74588205-74588224 None:intergenic 60.0%
! ACTGGTGGCTTGTACACCGG+AGG + chr4.2:74587920-74587939 None:intergenic 60.0%
! ACTGGTGGCTTGTACACCGG+TGG + chr4.2:74587920-74587939 None:intergenic 60.0%
!! ACCGGTGGTTGGTAAACCGG+AGG + chr4.2:74587740-74587759 None:intergenic 60.0%
ACCGGGGGCTTGTACACAGG+TGG + chr4.2:74587830-74587849 None:intergenic 65.0%
GCCACCTGTGTACAAGCCCC+CGG - chr4.2:74587826-74587845 MS.gene77006:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 74587659 74588369 74587659 ID=MS.gene77006
chr4.2 mRNA 74587659 74588369 74587659 ID=MS.gene77006.t1;Parent=MS.gene77006
chr4.2 exon 74587659 74588369 74587659 ID=MS.gene77006.t1.exon1;Parent=MS.gene77006.t1
chr4.2 CDS 74587659 74588369 74587659 ID=cds.MS.gene77006.t1;Parent=MS.gene77006.t1
Gene Sequence

>MS.gene77006

ATGGCTTCCTCAAACTTCCTTGTGCTGCTTCTTTTTGCTCTCTTTGTCATCCCTCAGGGTCTTGCCAATTATGACAAGCCTCCGGTTTACCAACCACCGGTGTATAAGCCACCAGTTGAGAAACCTCCGGTCTACAAACCCCCTGTAGAGAAGCCACCTGTGTATAAGCCACCTGTGTACAAGCCCCCGGTAGAAAAGCCACCTGTGTACAAACCCCCTGTAGTGAAACCCCCGGTTTACAAACCTCCTGTTTACAAGCCACCGGTGTACAAGCCACCAGTTGAGAAGCCTCCAGTTTACAAGCCTCCGGTATACAAGCCTCCAGTTTACAAGCCACCAGTAGTGAAGCCACCTGTATACAAGCCTCCAGTCTACAAGCCACCAGTTGAGAAGCCTCCAGTCTACAAGCCACCGGTGTACAAGCCTCCTGTTTACAAGCCTCCTGTTTACAAGCCACCAGTTGAGAAGCCTCCTGTTTACAAGCCTCCGGTGTACAAGCCACCAGTTTACAAGCCACCAGTAGTTAAGCCACCTGTATACAAGCCTCCAGTCTACAAGCCACCCGTTTACAAGCCTCCAGTTGAGAAGCCTCCAGTCTACAAGCCACCTGTTTACAAGCCCCCAGTTGAGAAACCTCCAGTCTACAAGCCACCAGTTTACAAGCCTCCAGTCGAGAAGCCACCAGTTTACGGACCTCCTCACCACCCATAG
Protein sequence

>MS.gene77006.t1

MASSNFLVLLLFALFVIPQGLANYDKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVVKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVYKPPVVKPPVYKPPVYKPPVEKPPVYKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVYKPPVVKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYGPPHHP