Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77479.t1 | XP_003601587.2 | 95.3 | 913 | 38 | 2 | 1 | 912 | 1 | 909 | 0.00E+00 | 1726.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77479.t1 | Q6YSJ5 | 62.2 | 879 | 309 | 10 | 40 | 912 | 22 | 883 | 0.0e+00 | 1091.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77479.t1 | G7J9J9 | 95.3 | 913 | 38 | 2 | 1 | 912 | 1 | 909 | 0.0e+00 | 1726.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene77479 | MS.gene016866 | PPI |
MS.gene39813 | MS.gene77479 | PPI |
MS.gene99379 | MS.gene77479 | PPI |
MS.gene77479 | MS.gene074399 | PPI |
MS.gene70580 | MS.gene77479 | PPI |
MS.gene016870 | MS.gene77479 | PPI |
MS.gene39809 | MS.gene77479 | PPI |
MS.gene25906 | MS.gene77479 | PPI |
MS.gene77479 | MS.gene022250 | PPI |
MS.gene37822 | MS.gene77479 | PPI |
MS.gene99383 | MS.gene77479 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77479.t1 | MTR_3g083300 | 95.290 | 913 | 38 | 2 | 1 | 912 | 1 | 909 | 0.0 | 1722 |
MS.gene77479.t1 | MTR_5g087870 | 60.271 | 886 | 331 | 7 | 34 | 911 | 75 | 947 | 0.0 | 1079 |
MS.gene77479.t1 | MTR_3g078647 | 58.362 | 879 | 342 | 7 | 40 | 911 | 61 | 922 | 0.0 | 1051 |
MS.gene77479.t1 | MTR_5g087870 | 58.352 | 886 | 326 | 7 | 34 | 911 | 75 | 925 | 0.0 | 1033 |
MS.gene77479.t1 | MTR_5g087890 | 58.428 | 878 | 344 | 9 | 34 | 911 | 35 | 891 | 0.0 | 1023 |
MS.gene77479.t1 | MTR_6g043180 | 58.182 | 880 | 343 | 8 | 40 | 911 | 40 | 902 | 0.0 | 1022 |
MS.gene77479.t1 | MTR_3g010650 | 53.409 | 880 | 379 | 13 | 40 | 912 | 21 | 876 | 0.0 | 926 |
MS.gene77479.t1 | MTR_6g477980 | 36.275 | 918 | 489 | 25 | 42 | 912 | 241 | 1109 | 1.95e-160 | 499 |
MS.gene77479.t1 | MTR_6g477980 | 36.275 | 918 | 489 | 25 | 42 | 912 | 247 | 1115 | 3.29e-160 | 499 |
MS.gene77479.t1 | MTR_1g041345 | 36.039 | 924 | 494 | 30 | 31 | 912 | 111 | 979 | 4.07e-157 | 487 |
MS.gene77479.t1 | MTR_2g059590 | 35.969 | 898 | 500 | 24 | 42 | 912 | 54 | 903 | 5.44e-157 | 484 |
MS.gene77479.t1 | MTR_1g102630 | 35.281 | 924 | 505 | 27 | 31 | 912 | 106 | 978 | 8.37e-155 | 481 |
MS.gene77479.t1 | MTR_4g113200 | 35.960 | 901 | 498 | 26 | 41 | 912 | 26 | 876 | 3.21e-153 | 473 |
MS.gene77479.t1 | MTR_4g056430 | 34.081 | 936 | 542 | 26 | 2 | 912 | 86 | 971 | 4.11e-148 | 463 |
MS.gene77479.t1 | MTR_4g056470 | 33.520 | 895 | 526 | 21 | 42 | 912 | 159 | 1008 | 3.17e-142 | 448 |
MS.gene77479.t1 | MTR_5g042590 | 31.744 | 923 | 530 | 29 | 35 | 912 | 149 | 1016 | 3.05e-121 | 393 |
MS.gene77479.t1 | MTR_2g059790 | 38.409 | 591 | 334 | 12 | 340 | 912 | 16 | 594 | 4.32e-118 | 372 |
MS.gene77479.t1 | MTR_2g059590 | 33.333 | 663 | 387 | 18 | 42 | 687 | 54 | 678 | 2.71e-95 | 315 |
MS.gene77479.t1 | MTR_4g083610 | 30.025 | 796 | 460 | 25 | 112 | 874 | 194 | 925 | 2.77e-84 | 291 |
MS.gene77479.t1 | MTR_2g028910 | 26.958 | 983 | 547 | 38 | 3 | 911 | 143 | 1028 | 2.10e-78 | 276 |
MS.gene77479.t1 | MTR_3g101730 | 32.402 | 179 | 72 | 5 | 639 | 813 | 39 | 172 | 9.01e-18 | 82.4 |
MS.gene77479.t1 | MTR_7g107230 | 43.750 | 96 | 40 | 1 | 479 | 574 | 140 | 221 | 4.71e-16 | 79.7 |
MS.gene77479.t1 | MTR_6g037320 | 47.297 | 74 | 39 | 0 | 594 | 667 | 1 | 74 | 5.09e-15 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77479.t1 | AT2G32940 | 62.144 | 877 | 309 | 8 | 37 | 912 | 24 | 878 | 0.0 | 1071 |
MS.gene77479.t1 | AT2G27040 | 56.629 | 890 | 361 | 8 | 31 | 912 | 52 | 924 | 0.0 | 1019 |
MS.gene77479.t1 | AT2G27040 | 56.629 | 890 | 361 | 8 | 31 | 912 | 52 | 924 | 0.0 | 1019 |
MS.gene77479.t1 | AT5G21150 | 56.946 | 871 | 353 | 8 | 46 | 912 | 44 | 896 | 0.0 | 1011 |
MS.gene77479.t1 | AT5G21030 | 50.823 | 911 | 375 | 17 | 15 | 912 | 4 | 854 | 0.0 | 873 |
MS.gene77479.t1 | AT5G21030 | 50.823 | 911 | 371 | 18 | 15 | 912 | 4 | 850 | 0.0 | 866 |
MS.gene77479.t1 | AT1G48410 | 36.491 | 929 | 470 | 27 | 42 | 912 | 182 | 1048 | 8.77e-159 | 493 |
MS.gene77479.t1 | AT1G48410 | 36.452 | 930 | 471 | 27 | 42 | 912 | 182 | 1050 | 2.39e-158 | 492 |
MS.gene77479.t1 | AT1G48410 | 36.452 | 930 | 471 | 27 | 42 | 912 | 182 | 1050 | 2.39e-158 | 492 |
MS.gene77479.t1 | AT5G43810 | 35.147 | 919 | 487 | 28 | 42 | 912 | 131 | 988 | 3.26e-152 | 474 |
MS.gene77479.t1 | AT5G43810 | 35.147 | 919 | 487 | 28 | 42 | 912 | 131 | 988 | 3.26e-152 | 474 |
MS.gene77479.t1 | AT5G43810 | 35.147 | 919 | 487 | 28 | 42 | 912 | 131 | 988 | 3.26e-152 | 474 |
MS.gene77479.t1 | AT5G43810 | 35.147 | 919 | 487 | 28 | 42 | 912 | 131 | 988 | 3.26e-152 | 474 |
MS.gene77479.t1 | AT2G27880 | 35.580 | 905 | 484 | 29 | 46 | 912 | 154 | 997 | 2.45e-145 | 456 |
MS.gene77479.t1 | AT1G69440 | 32.230 | 906 | 502 | 27 | 46 | 912 | 158 | 990 | 1.58e-115 | 377 |
MS.gene77479.t1 | AT1G31290 | 30.814 | 860 | 493 | 27 | 52 | 874 | 275 | 1069 | 3.21e-92 | 316 |
MS.gene77479.t1 | AT1G31290 | 30.814 | 860 | 493 | 27 | 52 | 874 | 313 | 1107 | 4.47e-92 | 316 |
MS.gene77479.t1 | AT1G31290 | 30.814 | 860 | 493 | 27 | 52 | 874 | 349 | 1143 | 7.31e-92 | 316 |
MS.gene77479.t1 | AT1G31280 | 29.366 | 899 | 500 | 33 | 23 | 874 | 153 | 963 | 3.09e-91 | 311 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCAAGAATTCAAAATTTA+TGG | 0.067326 | 3.2:-72118615 | MS.gene77479:CDS |
TCCATTGTTCTTTCCCTTAA+AGG | 0.138733 | 3.2:-72119281 | MS.gene77479:CDS |
CATATGACTCGATCCCTTTA+AGG | 0.150762 | 3.2:+72119267 | None:intergenic |
AATGGACTGCAAGGGTATTT+TGG | 0.214443 | 3.2:+72119298 | None:intergenic |
TTGCTGTCATCTAAACTTAA+TGG | 0.226920 | 3.2:-72117215 | MS.gene77479:CDS |
TTACAGGCTATTGGAAATTC+TGG | 0.231778 | 3.2:-72117944 | MS.gene77479:intron |
GGGAGGATTGTCTCTTAATA+TGG | 0.249429 | 3.2:-72118948 | MS.gene77479:CDS |
AGCCATCAGATATTGGTTAT+TGG | 0.253396 | 3.2:-72117502 | MS.gene77479:CDS |
ACATACATTATACTGGAAAA+AGG | 0.260122 | 3.2:+72119771 | None:intergenic |
TGCACACAACCTTTATTATC+TGG | 0.271589 | 3.2:+72113754 | None:intergenic |
AACCTCATCAATATGTTTAT+AGG | 0.277854 | 3.2:+72113603 | None:intergenic |
CATTAAGATTTACAGGCTAT+TGG | 0.284179 | 3.2:-72117953 | MS.gene77479:intron |
TTGAACTCAAATTTATTATC+TGG | 0.285094 | 3.2:+72119535 | None:intergenic |
AAAATTCCACCTTCCATTAC+TGG | 0.289479 | 3.2:+72117653 | None:intergenic |
TCAGGAGAAAACTGATTAAT+AGG | 0.290755 | 3.2:-72119642 | MS.gene77479:CDS |
TCCTCCTCTAATAAAGTAAA+TGG | 0.290968 | 3.2:+72117290 | None:intergenic |
CAACTCAAATTATTCTCTTC+AGG | 0.295576 | 3.2:-72114547 | MS.gene77479:intron |
AAGAGCTTCCAAAGTTGAAT+TGG | 0.314384 | 3.2:-72112770 | MS.gene77479:CDS |
CTTTGTAAATTTCAGGGCCT+TGG | 0.317902 | 3.2:-72117062 | MS.gene77479:intron |
TTGCTGGCAATAGAGCATTC+TGG | 0.317928 | 3.2:-72116798 | MS.gene77479:CDS |
GCCATCAGATATTGGTTATT+GGG | 0.320162 | 3.2:-72117501 | MS.gene77479:CDS |
CCATTGTTCTTTCCCTTAAA+GGG | 0.323956 | 3.2:-72119280 | MS.gene77479:CDS |
ACTTCTTAAAATCAATTCTA+AGG | 0.326188 | 3.2:-72116956 | MS.gene77479:intron |
CTTCTACAGCCATCAGATAT+TGG | 0.328425 | 3.2:-72117509 | MS.gene77479:CDS |
TCCCTGTGTAAGACGAAAAC+TGG | 0.331692 | 3.2:+72118967 | None:intergenic |
TTTAGCAAAATATTCATATA+CGG | 0.341239 | 3.2:+72118381 | None:intergenic |
CACGTGTTGCTTGATGAAAT+TGG | 0.343499 | 3.2:-72113152 | MS.gene77479:CDS |
TGCTGGCAATAGAGCATTCT+GGG | 0.347508 | 3.2:-72116797 | MS.gene77479:CDS |
GAATAGGTTGGGAGAGCTAT+TGG | 0.351022 | 3.2:+72119886 | None:intergenic |
TCCTGATGTGCTGTCTAGTA+TGG | 0.352618 | 3.2:-72119917 | MS.gene77479:CDS |
ATGTAGAAATCGTAATTTCT+TGG | 0.356720 | 3.2:+72113384 | None:intergenic |
CAAAGTTGAATTGGAATGTC+AGG | 0.363699 | 3.2:-72112761 | MS.gene77479:CDS |
AAAAGGATGATGGTATTATC+AGG | 0.373300 | 3.2:-72116410 | MS.gene77479:intron |
CAACTTTGGAAGCTCTTGAA+TGG | 0.375153 | 3.2:+72112776 | None:intergenic |
ACTTTCCATGTCTTGATGTT+GGG | 0.375386 | 3.2:-72118327 | MS.gene77479:CDS |
GCTCTATATCTCGAAATTAG+AGG | 0.379869 | 3.2:+72116522 | None:intergenic |
GCCCTCGCGAGGAAAATAAA+AGG | 0.383421 | 3.2:-72119373 | MS.gene77479:CDS |
GATAGGAGAAAATCAATTAC+AGG | 0.385642 | 3.2:+72118805 | None:intergenic |
AACTTTGGAAGCTCTTGAAT+GGG | 0.386107 | 3.2:+72112777 | None:intergenic |
AGCCTTACAGCAGCTGTTGA+TGG | 0.387959 | 3.2:+72116693 | None:intergenic |
TGGAGGAATAAATTCTTTGC+TGG | 0.397191 | 3.2:-72116814 | MS.gene77479:CDS |
TCACTTGACATACATTATAC+TGG | 0.400607 | 3.2:+72119764 | None:intergenic |
GCGGCCATTTACTTTATTAG+AGG | 0.401735 | 3.2:-72117294 | MS.gene77479:CDS |
AGGTTGCAGCTGTGCTCCTC+TGG | 0.405009 | 3.2:+72112995 | None:intergenic |
TACTTTCCATGTCTTGATGT+TGG | 0.405546 | 3.2:-72118328 | MS.gene77479:CDS |
GGGATGTTTCCCTCTGAATC+AGG | 0.405805 | 3.2:+72112798 | None:intergenic |
TCAAGAACTCTTCCTTCAAC+TGG | 0.410088 | 3.2:+72117863 | None:intergenic |
CCATCCCTAAAATCATCGTT+GGG | 0.410555 | 3.2:+72116751 | None:intergenic |
ATATGACTCGATCCCTTTAA+GGG | 0.411344 | 3.2:+72119268 | None:intergenic |
AGCAGCAGTACTGAGAGTTT+TGG | 0.411522 | 3.2:-72119407 | MS.gene77479:intron |
CTGACATTCCAATTCAACTT+TGG | 0.412092 | 3.2:+72112762 | None:intergenic |
CACTTACAGTTGTTGAATGC+AGG | 0.412851 | 3.2:+72118578 | None:intergenic |
CTGTTGAAAGCAAGGGCATC+AGG | 0.419930 | 3.2:-72119660 | MS.gene77479:CDS |
AGGCGGAGTAGAAGGAGTTC+GGG | 0.420984 | 3.2:-72118999 | MS.gene77479:CDS |
TGGTGAATCTCAATTTCAAC+AGG | 0.422456 | 3.2:-72113796 | MS.gene77479:CDS |
TGCCACAATTACAGTGAACT+TGG | 0.423102 | 3.2:+72113564 | None:intergenic |
TTATGTTGGATTTAGGTTGT+TGG | 0.423726 | 3.2:-72116558 | MS.gene77479:intron |
CAAGTTCAGAAGAGTATGTT+TGG | 0.425625 | 3.2:+72119614 | None:intergenic |
CGTTGGGGTATCTTTAATCA+AGG | 0.429944 | 3.2:+72116767 | None:intergenic |
TAGCTTGAAACAGCTTTGTA+TGG | 0.436156 | 3.2:+72113530 | None:intergenic |
AGCACAGCTGCAACCTCAAT+TGG | 0.437891 | 3.2:-72112988 | MS.gene77479:intron |
CAGCCTACTGATAATAGAAT+AGG | 0.438878 | 3.2:+72119870 | None:intergenic |
CAAACATACTCTTCTGAACT+TGG | 0.446873 | 3.2:-72119613 | MS.gene77479:CDS |
AGGAAGTGTCTGAGTGATGT+TGG | 0.447585 | 3.2:-72117036 | MS.gene77479:CDS |
AGAGCTTAACCAGATAATAA+AGG | 0.448697 | 3.2:-72113763 | MS.gene77479:intron |
GCATGGTGGGCATAGTATAT+AGG | 0.450067 | 3.2:+72112879 | None:intergenic |
TGAGGCAGCGAGCAGCTAAC+AGG | 0.452726 | 3.2:-72119205 | MS.gene77479:intron |
AGAAAATCAATTACAGGTCC+AGG | 0.458109 | 3.2:+72118811 | None:intergenic |
GGAAGTGTCTGAGTGATGTT+GGG | 0.461376 | 3.2:-72117035 | MS.gene77479:CDS |
TACTGATAATAGAATAGGTT+GGG | 0.462123 | 3.2:+72119875 | None:intergenic |
AGGTTGTTGGATCTCGATGC+TGG | 0.463185 | 3.2:-72116545 | MS.gene77479:CDS |
GAGGCGGAGTAGAAGGAGTT+CGG | 0.465739 | 3.2:-72119000 | MS.gene77479:CDS |
TTCTGATGGCGTACCAATTG+AGG | 0.467308 | 3.2:+72112975 | None:intergenic |
GAATAATTTGAGTTGGTTTG+CGG | 0.468297 | 3.2:+72114555 | None:intergenic |
TCGAGGAATTTCATCGATGT+TGG | 0.470697 | 3.2:-72119022 | MS.gene77479:CDS |
GAATCAATCATCTCCACCTT+AGG | 0.471437 | 3.2:+72116480 | None:intergenic |
AAATTCCACCTTCCATTACT+GGG | 0.473459 | 3.2:+72117654 | None:intergenic |
GGGAACCTCGTTATATTGAC+TGG | 0.475105 | 3.2:-72118768 | MS.gene77479:CDS |
AGGAATTTCATCGATGTTGG+AGG | 0.476725 | 3.2:-72119019 | MS.gene77479:CDS |
TAATTCTCAGGATGCATTGA+GGG | 0.477606 | 3.2:-72119243 | MS.gene77479:CDS |
TTTCCCTCTGAATCAGGACT+TGG | 0.478734 | 3.2:+72112804 | None:intergenic |
TTGATGTTGGGAAGCCAAAT+CGG | 0.480224 | 3.2:-72118315 | MS.gene77479:CDS |
CATTTGAGCTGCAGCATGGT+GGG | 0.481186 | 3.2:+72112866 | None:intergenic |
TTCTACATGTGTGCTCATGC+TGG | 0.485331 | 3.2:-72113369 | MS.gene77479:CDS |
AGGCTGAGTGTCGGGACCAC+AGG | 0.487528 | 3.2:-72119853 | MS.gene77479:CDS |
GATGTTGGAGGCGGAGTAGA+AGG | 0.490244 | 3.2:-72119007 | MS.gene77479:CDS |
TCCACAGCTTCTTCAAAGTC+AGG | 0.492479 | 3.2:+72119964 | None:intergenic |
AAATTTCAGGGCCTTGGAAA+AGG | 0.493150 | 3.2:-72117056 | MS.gene77479:intron |
TTAGGGATGGATGTCTCTCA+TGG | 0.493402 | 3.2:-72116738 | MS.gene77479:CDS |
CGAGTCATATGCTAATTCTC+AGG | 0.493752 | 3.2:-72119255 | MS.gene77479:CDS |
GATGTCTCTCATGGTTCCCC+TGG | 0.494710 | 3.2:-72116729 | MS.gene77479:CDS |
TCCATACTAGACAGCACATC+AGG | 0.495360 | 3.2:+72119916 | None:intergenic |
AAGCAATTCACTCCAGTTGA+AGG | 0.497118 | 3.2:-72117875 | MS.gene77479:CDS |
CTAGATTTCTATAGTTCAAG+TGG | 0.497260 | 3.2:-72114581 | MS.gene77479:CDS |
GAAGACTGCTTCCCCAGTAA+TGG | 0.502847 | 3.2:-72117666 | MS.gene77479:CDS |
CTGAAGAGAATAATTTGAGT+TGG | 0.507739 | 3.2:+72114548 | None:intergenic |
TCAAATTTATTATCTGGAAG+AGG | 0.508444 | 3.2:+72119541 | None:intergenic |
GCTGTTTCAAGCTAATGCTC+TGG | 0.511577 | 3.2:-72113521 | MS.gene77479:CDS |
TCCATCCCTAAAATCATCGT+TGG | 0.515662 | 3.2:+72116750 | None:intergenic |
ACTAAAGATGCTCTTTGCAC+AGG | 0.518323 | 3.2:+72118088 | None:intergenic |
ATATTCTTATTACAGCTTGG+AGG | 0.519143 | 3.2:-72116831 | MS.gene77479:intron |
TAAAAGAACTGTTGAAAGCA+AGG | 0.519488 | 3.2:-72119668 | MS.gene77479:CDS |
AACGAGGTTCCCTCACACTC+TGG | 0.519744 | 3.2:+72118779 | None:intergenic |
GGAGGATTGTCTCTTAATAT+GGG | 0.521120 | 3.2:-72118947 | MS.gene77479:intron |
TTATCAGTAGGCTGAGTGTC+GGG | 0.522170 | 3.2:-72119861 | MS.gene77479:CDS |
GCCATTTACTTTATTAGAGG+AGG | 0.522401 | 3.2:-72117291 | MS.gene77479:CDS |
GAAAATTTAACCCTGTTGCA+AGG | 0.523968 | 3.2:-72117256 | MS.gene77479:CDS |
GGAGGTGATGGAGGTAAAGC+TGG | 0.527652 | 3.2:+72119937 | None:intergenic |
CGTGGAAAGAGGGTGTCTCT+TGG | 0.527878 | 3.2:-72119071 | MS.gene77479:intron |
ACACAAAGAATCAACTTTGG+TGG | 0.530353 | 3.2:+72117191 | None:intergenic |
ATGTGGAATGAGCAAGGGAA+TGG | 0.530588 | 3.2:-72117420 | MS.gene77479:intron |
CCCTCACACTCTGGTTGGAT+AGG | 0.531323 | 3.2:+72118788 | None:intergenic |
AAAATTTAACCCTGTTGCAA+GGG | 0.534798 | 3.2:-72117255 | MS.gene77479:CDS |
TTCTTGTTCAGGGATGGAGT+TGG | 0.535856 | 3.2:-72113816 | MS.gene77479:intron |
ATGGAATATCTGATCGGCCA+GGG | 0.537320 | 3.2:+72116712 | None:intergenic |
TGTAAGATCACAGTCTCCTA+AGG | 0.538809 | 3.2:-72116496 | MS.gene77479:CDS |
GCATCATTCATCTTATCCAC+AGG | 0.540020 | 3.2:+72116447 | None:intergenic |
AATTTCATCGATGTTGGAGG+CGG | 0.540242 | 3.2:-72119016 | MS.gene77479:CDS |
TCCCAAGTTCACTGTAATTG+TGG | 0.549617 | 3.2:-72113566 | MS.gene77479:CDS |
GGAAAGAACAATGGACTGCA+AGG | 0.550385 | 3.2:+72119289 | None:intergenic |
ATAATGCCTTTGTATACCGC+TGG | 0.550641 | 3.2:+72118113 | None:intergenic |
ACTTACAGTTGTTGAATGCA+GGG | 0.551345 | 3.2:+72118579 | None:intergenic |
ACATGGAAAGTAAGCAGAAG+AGG | 0.552059 | 3.2:+72118339 | None:intergenic |
GATGGAATATCTGATCGGCC+AGG | 0.555026 | 3.2:+72116711 | None:intergenic |
AAAGAGGGTGTCTCTTGGTA+AGG | 0.555122 | 3.2:-72119066 | MS.gene77479:intron |
GACAGCACATCAGGAGGTGA+TGG | 0.564571 | 3.2:+72119925 | None:intergenic |
TCCTATCCAACCAGAGTGTG+AGG | 0.566604 | 3.2:-72118789 | MS.gene77479:CDS |
ATCTCCAAGTCCTGATTCAG+AGG | 0.568425 | 3.2:-72112808 | MS.gene77479:CDS |
CTAATTCTCAGGATGCATTG+AGG | 0.568737 | 3.2:-72119244 | MS.gene77479:CDS |
AAGACACAAAGAATCAACTT+TGG | 0.569909 | 3.2:+72117188 | None:intergenic |
TCATTTGAGCTGCAGCATGG+TGG | 0.570376 | 3.2:+72112865 | None:intergenic |
GGCAAAAGCTTTGCGTACGA+TGG | 0.570982 | 3.2:-72119589 | MS.gene77479:CDS |
CAACCTATTCTATTATCAGT+AGG | 0.570991 | 3.2:-72119873 | MS.gene77479:CDS |
GAAATTGGATTCTCACCAGA+TGG | 0.572088 | 3.2:-72113137 | MS.gene77479:CDS |
TCGTTATATTGACTGGGCAA+AGG | 0.573639 | 3.2:-72118761 | MS.gene77479:intron |
GCCTTTGTATACCGCTGGAG+GGG | 0.575742 | 3.2:+72118118 | None:intergenic |
TGCCTTTGTATACCGCTGGA+GGG | 0.578738 | 3.2:+72118117 | None:intergenic |
AAAGGTTGCATCTGTAGCAT+CGG | 0.579610 | 3.2:+72119789 | None:intergenic |
TTCTTTGTGTCTTGCCAGAG+AGG | 0.579962 | 3.2:-72117178 | MS.gene77479:CDS |
GATTAGATGTGGAATGAGCA+AGG | 0.580659 | 3.2:-72117426 | MS.gene77479:CDS |
TGATTCTCTATTCAAGCCTG+TGG | 0.582586 | 3.2:-72116463 | MS.gene77479:CDS |
AGCTGCTCGCTGCCTCAGTA+CGG | 0.583868 | 3.2:+72119211 | None:intergenic |
AAAAGAACTGTTGAAAGCAA+GGG | 0.585910 | 3.2:-72119667 | MS.gene77479:CDS |
ACATACTCTTCTGAACTTGG+TGG | 0.585999 | 3.2:-72119610 | MS.gene77479:CDS |
AAAGTTGAATTGGAATGTCA+GGG | 0.586502 | 3.2:-72112760 | MS.gene77479:CDS |
GCTCTGGAAAACGTTCCTCC+TGG | 0.588624 | 3.2:-72113505 | MS.gene77479:intron |
TTCTCATTTGAGCTGCAGCA+TGG | 0.590822 | 3.2:+72112862 | None:intergenic |
TATTGATCAGTGATCTTGAG+AGG | 0.590847 | 3.2:+72116991 | None:intergenic |
TTTGAGACACAGTTGAAGGT+AGG | 0.591550 | 3.2:-72117696 | MS.gene77479:intron |
ACCTGACTTTGAAGAAGCTG+TGG | 0.593647 | 3.2:-72119965 | MS.gene77479:CDS |
CCCTTTAAGGGAAAGAACAA+TGG | 0.596031 | 3.2:+72119280 | None:intergenic |
GTTCACTTGTTCCCCTCCAG+CGG | 0.598429 | 3.2:-72118129 | MS.gene77479:CDS |
GCCCAATAACCAATATCTGA+TGG | 0.600894 | 3.2:+72117500 | None:intergenic |
CTACTGATAATAGAATAGGT+TGG | 0.603547 | 3.2:+72119874 | None:intergenic |
AGCAACACGTGATAATGCAC+AGG | 0.603754 | 3.2:+72113164 | None:intergenic |
ATTGATCAGTGATCTTGAGA+GGG | 0.604848 | 3.2:+72116992 | None:intergenic |
ACAAGGGAGCTGATTAGATG+TGG | 0.605031 | 3.2:-72117437 | MS.gene77479:CDS |
ATTATCAGTAGGCTGAGTGT+CGG | 0.606927 | 3.2:-72119862 | MS.gene77479:CDS |
GTTGGGGTATCTTTAATCAA+GGG | 0.607083 | 3.2:+72116768 | None:intergenic |
ACTTTGGAAGCTCTTGAATG+GGG | 0.607139 | 3.2:+72112778 | None:intergenic |
TTCATATACGGTAATATCCA+CGG | 0.608023 | 3.2:+72118393 | None:intergenic |
AGGTTCCCTCACACTCTGGT+TGG | 0.610864 | 3.2:+72118783 | None:intergenic |
ACAACGACGATCATAAAACC+TGG | 0.611593 | 3.2:-72118829 | MS.gene77479:CDS |
AGCACATCAGGAGGTGATGG+AGG | 0.613682 | 3.2:+72119928 | None:intergenic |
ATTAAGTTTAGATGACAGCA+AGG | 0.615537 | 3.2:+72117217 | None:intergenic |
ATATATAATAGGGAACGTCT+AGG | 0.616244 | 3.2:-72113187 | MS.gene77479:intron |
AAGATCACAGTCTCCTAAGG+TGG | 0.617635 | 3.2:-72116493 | MS.gene77479:CDS |
ATGCCTTTGTATACCGCTGG+AGG | 0.619085 | 3.2:+72118116 | None:intergenic |
GGAACCTCGTTATATTGACT+GGG | 0.619345 | 3.2:-72118767 | MS.gene77479:CDS |
GTGGATAAGATGAATGATGC+TGG | 0.619986 | 3.2:-72116444 | MS.gene77479:CDS |
GTGATACTAGTTACATAACA+AGG | 0.620176 | 3.2:-72117454 | MS.gene77479:CDS |
TTCTTGAAGAAACATTTGCA+AGG | 0.623575 | 3.2:-72119507 | MS.gene77479:intron |
GGCCTATAAACATATTGATG+AGG | 0.628880 | 3.2:-72113605 | MS.gene77479:CDS |
GAAAGAACTTTGTACACAGT+GGG | 0.633260 | 3.2:-72119565 | MS.gene77479:CDS |
GCCACAATTACAGTGAACTT+GGG | 0.633960 | 3.2:+72113565 | None:intergenic |
GCTTCCCCAGTAATGGAAGG+TGG | 0.637271 | 3.2:-72117659 | MS.gene77479:CDS |
AGAAAGAACTTTGTACACAG+TGG | 0.637549 | 3.2:-72119566 | MS.gene77479:CDS |
TGTGCTGTCTAGTATGGAAG+CGG | 0.638258 | 3.2:-72119911 | MS.gene77479:CDS |
GGCTTCCCAACATCAAGACA+TGG | 0.639701 | 3.2:+72118322 | None:intergenic |
AATTCCACCTTCCATTACTG+GGG | 0.639980 | 3.2:+72117655 | None:intergenic |
CCTATCCAACCAGAGTGTGA+GGG | 0.641143 | 3.2:-72118788 | MS.gene77479:CDS |
AAGAGGTCAGCTCAATGCCA+CGG | 0.643931 | 3.2:+72118356 | None:intergenic |
GTCAATAGAAATACCACATG+CGG | 0.644333 | 3.2:+72117898 | None:intergenic |
TCCCCTCCAGCGGTATACAA+AGG | 0.644422 | 3.2:-72118119 | MS.gene77479:CDS |
GAAAGAACAATGGACTGCAA+GGG | 0.645951 | 3.2:+72119290 | None:intergenic |
ACTGCTTCCCCAGTAATGGA+AGG | 0.646246 | 3.2:-72117662 | MS.gene77479:CDS |
TGGAATATCTGATCGGCCAG+GGG | 0.648815 | 3.2:+72116713 | None:intergenic |
TGCTAATGGAAGCCCTCGCG+AGG | 0.649571 | 3.2:-72119384 | MS.gene77479:CDS |
CAATAACTCGGAGCAGACCG+TGG | 0.649994 | 3.2:-72118410 | MS.gene77479:CDS |
ATTAGATGTGGAATGAGCAA+GGG | 0.654490 | 3.2:-72117425 | MS.gene77479:CDS |
CTGTTGATGGAATATCTGAT+CGG | 0.655109 | 3.2:+72116706 | None:intergenic |
GATGCTGTTCTTGCCGCATG+TGG | 0.655400 | 3.2:-72117911 | MS.gene77479:CDS |
TCTCCAAGTCCTGATTCAGA+GGG | 0.656047 | 3.2:-72112807 | MS.gene77479:CDS |
AGAATTCAACAAACCTCCAG+AGG | 0.657878 | 3.2:+72118280 | None:intergenic |
GGTGATGGAGGTAAAGCTGG+TGG | 0.663403 | 3.2:+72119940 | None:intergenic |
CATCCCTAAAATCATCGTTG+GGG | 0.665242 | 3.2:+72116752 | None:intergenic |
AAATGGAGAAGACAATAACT+CGG | 0.665330 | 3.2:-72118422 | MS.gene77479:CDS |
AAGAGTTCTTGAGACACCAA+AGG | 0.666572 | 3.2:-72117852 | MS.gene77479:intron |
TTGATCAGTGATCTTGAGAG+GGG | 0.679194 | 3.2:+72116993 | None:intergenic |
AGTATTTACAGAATATTGAG+CGG | 0.680400 | 3.2:-72117313 | MS.gene77479:intron |
TGATACTAGTTACATAACAA+GGG | 0.689799 | 3.2:-72117453 | MS.gene77479:CDS |
ATACTAGACAGCACATCAGG+AGG | 0.702332 | 3.2:+72119919 | None:intergenic |
GAAGTGTCTGAGTGATGTTG+GGG | 0.703380 | 3.2:-72117034 | MS.gene77479:CDS |
GGGTTCTTGATACCGTACTG+AGG | 0.710755 | 3.2:-72119223 | MS.gene77479:CDS |
TCAGTCAAAGACATTCACAG+TGG | 0.721924 | 3.2:-72119336 | MS.gene77479:CDS |
GGCGGAGTAGAAGGAGTTCG+GGG | 0.726067 | 3.2:-72118998 | MS.gene77479:CDS |
TTTGCCCAGTCAATATAACG+AGG | 0.751855 | 3.2:+72118763 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 72112740 | 72119998 | 72112740 | ID=MS.gene77479 |
chr3.2 | mRNA | 72112740 | 72119998 | 72112740 | ID=MS.gene77479.t1;Parent=MS.gene77479 |
chr3.2 | exon | 72119777 | 72119998 | 72119777 | ID=MS.gene77479.t1.exon1;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72119777 | 72119998 | 72119777 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72119508 | 72119710 | 72119508 | ID=MS.gene77479.t1.exon2;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72119508 | 72119710 | 72119508 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72119206 | 72119424 | 72119206 | ID=MS.gene77479.t1.exon3;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72119206 | 72119424 | 72119206 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72118948 | 72119084 | 72118948 | ID=MS.gene77479.t1.exon4;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72118948 | 72119084 | 72118948 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72118762 | 72118859 | 72118762 | ID=MS.gene77479.t1.exon5;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72118762 | 72118859 | 72118762 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72118585 | 72118682 | 72118585 | ID=MS.gene77479.t1.exon6;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72118585 | 72118682 | 72118585 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72118294 | 72118462 | 72118294 | ID=MS.gene77479.t1.exon7;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72118294 | 72118462 | 72118294 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72118039 | 72118155 | 72118039 | ID=MS.gene77479.t1.exon8;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72118039 | 72118155 | 72118039 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72117853 | 72117960 | 72117853 | ID=MS.gene77479.t1.exon9;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72117853 | 72117960 | 72117853 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72117644 | 72117706 | 72117644 | ID=MS.gene77479.t1.exon10;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72117644 | 72117706 | 72117644 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72117421 | 72117534 | 72117421 | ID=MS.gene77479.t1.exon11;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72117421 | 72117534 | 72117421 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72117159 | 72117324 | 72117159 | ID=MS.gene77479.t1.exon12;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72117159 | 72117324 | 72117159 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72116957 | 72117069 | 72116957 | ID=MS.gene77479.t1.exon13;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72116957 | 72117069 | 72116957 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72116701 | 72116838 | 72116701 | ID=MS.gene77479.t1.exon14;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72116701 | 72116838 | 72116701 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72116411 | 72116565 | 72116411 | ID=MS.gene77479.t1.exon15;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72116411 | 72116565 | 72116411 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72114548 | 72114613 | 72114548 | ID=MS.gene77479.t1.exon16;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72114548 | 72114613 | 72114548 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72113764 | 72113827 | 72113764 | ID=MS.gene77479.t1.exon17;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72113764 | 72113827 | 72113764 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72113506 | 72113626 | 72113506 | ID=MS.gene77479.t1.exon18;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72113506 | 72113626 | 72113506 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72113362 | 72113435 | 72113362 | ID=MS.gene77479.t1.exon19;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72113362 | 72113435 | 72113362 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72113104 | 72113198 | 72113104 | ID=MS.gene77479.t1.exon20;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72113104 | 72113198 | 72113104 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72112989 | 72113020 | 72112989 | ID=MS.gene77479.t1.exon21;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72112989 | 72113020 | 72112989 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
chr3.2 | exon | 72112740 | 72112906 | 72112740 | ID=MS.gene77479.t1.exon22;Parent=MS.gene77479.t1 |
chr3.2 | CDS | 72112740 | 72112906 | 72112740 | ID=cds.MS.gene77479.t1;Parent=MS.gene77479.t1 |
Gene Sequence |
Protein sequence |