Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77725.t1 | XP_013455336.1 | 86.2 | 196 | 27 | 0 | 1 | 196 | 1 | 196 | 1.20E-81 | 312.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77725.t1 | P17407 | 46.3 | 164 | 85 | 1 | 36 | 196 | 28 | 191 | 1.0e-30 | 134.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77725.t1 | I3T947 | 86.2 | 196 | 27 | 0 | 1 | 196 | 1 | 196 | 8.4e-82 | 312.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene84367 | MS.gene77725 | PPI |
MS.gene009443 | MS.gene77725 | PPI |
MS.gene77725 | MS.gene56243 | PPI |
MS.gene77725 | MS.gene84366 | PPI |
MS.gene51614 | MS.gene77725 | PPI |
MS.gene77725 | MS.gene56242 | PPI |
MS.gene009441 | MS.gene77725 | PPI |
MS.gene009442 | MS.gene77725 | PPI |
MS.gene84369 | MS.gene77725 | PPI |
MS.gene56244 | MS.gene77725 | PPI |
MS.gene84370 | MS.gene77725 | PPI |
MS.gene51615 | MS.gene77725 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77725.t1 | MTR_4g035905 | 95.408 | 196 | 9 | 0 | 1 | 196 | 1 | 196 | 4.89e-139 | 386 |
MS.gene77725.t1 | MTR_4g035870 | 88.776 | 196 | 22 | 0 | 1 | 196 | 1 | 196 | 3.30e-127 | 356 |
MS.gene77725.t1 | MTR_4g035880 | 87.755 | 196 | 24 | 0 | 1 | 196 | 1 | 196 | 4.70e-125 | 351 |
MS.gene77725.t1 | MTR_3g008840 | 47.879 | 165 | 84 | 1 | 34 | 196 | 23 | 187 | 6.72e-48 | 155 |
MS.gene77725.t1 | MTR_3g008820 | 46.667 | 165 | 86 | 1 | 34 | 196 | 22 | 186 | 3.26e-47 | 153 |
MS.gene77725.t1 | MTR_5g012000 | 42.683 | 164 | 91 | 1 | 36 | 196 | 48 | 211 | 4.21e-44 | 146 |
MS.gene77725.t1 | MTR_4g101760 | 38.857 | 175 | 104 | 1 | 25 | 196 | 28 | 202 | 8.02e-40 | 135 |
MS.gene77725.t1 | MTR_4g120825 | 40.000 | 170 | 88 | 4 | 36 | 193 | 35 | 202 | 2.20e-36 | 126 |
MS.gene77725.t1 | MTR_4g120830 | 39.412 | 170 | 89 | 4 | 36 | 193 | 35 | 202 | 6.68e-36 | 125 |
MS.gene77725.t1 | MTR_8g104765 | 39.412 | 170 | 89 | 4 | 36 | 193 | 44 | 211 | 2.49e-35 | 124 |
MS.gene77725.t1 | MTR_3g008760 | 37.107 | 159 | 97 | 2 | 36 | 191 | 66 | 224 | 2.13e-31 | 114 |
MS.gene77725.t1 | MTR_4g035855 | 35.204 | 196 | 116 | 3 | 8 | 193 | 8 | 202 | 6.32e-31 | 112 |
MS.gene77725.t1 | MTR_7g108790 | 35.802 | 162 | 96 | 2 | 37 | 195 | 34 | 190 | 7.65e-31 | 112 |
MS.gene77725.t1 | MTR_2g043560 | 39.394 | 165 | 86 | 4 | 36 | 195 | 34 | 189 | 2.85e-30 | 110 |
MS.gene77725.t1 | MTR_1g088540 | 39.516 | 124 | 73 | 1 | 72 | 195 | 22 | 143 | 7.49e-27 | 100 |
MS.gene77725.t1 | MTR_4g124855 | 32.075 | 212 | 113 | 5 | 1 | 195 | 2 | 199 | 1.85e-25 | 98.2 |
MS.gene77725.t1 | MTR_4g025590 | 35.593 | 177 | 91 | 5 | 36 | 196 | 3 | 172 | 2.21e-21 | 87.0 |
MS.gene77725.t1 | MTR_4g025550 | 34.314 | 204 | 105 | 7 | 10 | 196 | 10 | 201 | 2.68e-21 | 87.4 |
MS.gene77725.t1 | MTR_4g025610 | 35.429 | 175 | 94 | 4 | 36 | 196 | 32 | 201 | 3.60e-21 | 87.0 |
MS.gene77725.t1 | MTR_4g025620 | 32.683 | 205 | 106 | 6 | 8 | 196 | 13 | 201 | 1.94e-20 | 85.1 |
MS.gene77725.t1 | MTR_3g091380 | 31.868 | 182 | 107 | 4 | 19 | 189 | 59 | 234 | 4.20e-19 | 84.7 |
MS.gene77725.t1 | MTR_1g008140 | 31.977 | 172 | 88 | 5 | 37 | 189 | 82 | 243 | 4.23e-17 | 79.0 |
MS.gene77725.t1 | MTR_7g112590 | 28.221 | 163 | 105 | 4 | 37 | 195 | 59 | 213 | 6.17e-16 | 75.5 |
MS.gene77725.t1 | MTR_8g023310 | 28.205 | 156 | 107 | 3 | 37 | 188 | 68 | 222 | 5.03e-15 | 73.2 |
MS.gene77725.t1 | MTR_7g112580 | 39.796 | 98 | 50 | 3 | 99 | 192 | 102 | 194 | 5.62e-15 | 72.8 |
MS.gene77725.t1 | MTR_0036s0140 | 26.087 | 184 | 123 | 4 | 8 | 189 | 49 | 221 | 6.01e-14 | 68.2 |
MS.gene77725.t1 | MTR_8g023150 | 32.530 | 166 | 91 | 5 | 37 | 192 | 77 | 231 | 8.12e-14 | 69.3 |
MS.gene77725.t1 | MTR_1g083510 | 27.389 | 157 | 110 | 3 | 37 | 193 | 56 | 208 | 2.58e-13 | 68.2 |
MS.gene77725.t1 | MTR_7g108905 | 25.654 | 191 | 126 | 3 | 10 | 192 | 18 | 200 | 1.46e-12 | 65.9 |
MS.gene77725.t1 | MTR_1g083470 | 27.950 | 161 | 106 | 4 | 37 | 193 | 58 | 212 | 6.58e-12 | 63.9 |
MS.gene77725.t1 | MTR_1g083500 | 27.950 | 161 | 106 | 4 | 37 | 193 | 58 | 212 | 6.58e-12 | 63.9 |
MS.gene77725.t1 | MTR_4g005170 | 24.719 | 178 | 120 | 4 | 26 | 197 | 52 | 221 | 9.75e-12 | 63.5 |
MS.gene77725.t1 | MTR_8g104580 | 28.750 | 160 | 91 | 5 | 40 | 192 | 27 | 170 | 1.17e-11 | 63.2 |
MS.gene77725.t1 | MTR_1g083490 | 26.752 | 157 | 105 | 4 | 41 | 193 | 67 | 217 | 2.51e-11 | 62.4 |
MS.gene77725.t1 | MTR_8g104655 | 28.125 | 160 | 92 | 5 | 40 | 192 | 35 | 178 | 5.20e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77725.t1 | AT5G62360 | 59.259 | 162 | 65 | 1 | 36 | 197 | 43 | 203 | 3.52e-64 | 197 |
MS.gene77725.t1 | AT5G62350 | 46.667 | 165 | 84 | 1 | 36 | 196 | 38 | 202 | 4.15e-44 | 146 |
MS.gene77725.t1 | AT1G62770 | 42.365 | 203 | 108 | 4 | 1 | 197 | 1 | 200 | 1.63e-43 | 144 |
MS.gene77725.t1 | AT1G14890 | 40.000 | 200 | 106 | 5 | 4 | 195 | 24 | 217 | 2.04e-41 | 139 |
MS.gene77725.t1 | AT1G62760 | 45.882 | 170 | 87 | 2 | 30 | 196 | 141 | 308 | 5.12e-41 | 141 |
MS.gene77725.t1 | AT2G01610 | 40.838 | 191 | 95 | 4 | 21 | 193 | 27 | 217 | 2.96e-40 | 137 |
MS.gene77725.t1 | AT3G47380 | 44.848 | 165 | 87 | 1 | 36 | 196 | 38 | 202 | 3.12e-40 | 136 |
MS.gene77725.t1 | AT4G25260 | 39.378 | 193 | 111 | 2 | 10 | 196 | 9 | 201 | 4.53e-40 | 135 |
MS.gene77725.t1 | AT5G51520 | 39.286 | 196 | 106 | 5 | 9 | 192 | 8 | 202 | 2.49e-38 | 131 |
MS.gene77725.t1 | AT4G25250 | 39.506 | 162 | 95 | 2 | 31 | 189 | 32 | 193 | 3.27e-38 | 130 |
MS.gene77725.t1 | AT5G20740 | 36.316 | 190 | 111 | 3 | 8 | 192 | 9 | 193 | 3.10e-37 | 128 |
MS.gene77725.t1 | AT5G20740 | 40.373 | 161 | 90 | 2 | 37 | 192 | 68 | 227 | 1.19e-36 | 128 |
MS.gene77725.t1 | AT4G12390 | 43.976 | 166 | 88 | 1 | 36 | 196 | 39 | 204 | 3.40e-34 | 120 |
MS.gene77725.t1 | AT1G70720 | 35.789 | 190 | 112 | 3 | 10 | 193 | 9 | 194 | 2.44e-32 | 115 |
MS.gene77725.t1 | AT1G70720 | 35.789 | 190 | 112 | 3 | 10 | 193 | 21 | 206 | 2.99e-32 | 115 |
MS.gene77725.t1 | AT1G23205 | 35.838 | 173 | 99 | 3 | 30 | 191 | 27 | 198 | 7.29e-29 | 107 |
MS.gene77725.t1 | AT3G62820 | 32.620 | 187 | 117 | 5 | 11 | 193 | 9 | 190 | 5.14e-24 | 94.4 |
MS.gene77725.t1 | AT2G47670 | 36.875 | 160 | 96 | 2 | 36 | 193 | 48 | 204 | 9.93e-24 | 94.0 |
MS.gene77725.t1 | AT5G53370 | 34.416 | 154 | 96 | 3 | 37 | 189 | 111 | 260 | 5.04e-21 | 90.5 |
MS.gene77725.t1 | AT5G53370 | 34.416 | 154 | 96 | 3 | 37 | 189 | 75 | 224 | 7.37e-21 | 90.1 |
MS.gene77725.t1 | AT1G53830 | 31.013 | 158 | 107 | 2 | 37 | 192 | 62 | 219 | 2.52e-20 | 88.6 |
MS.gene77725.t1 | AT4G00080 | 32.738 | 168 | 93 | 6 | 36 | 189 | 35 | 196 | 3.41e-20 | 84.7 |
MS.gene77725.t1 | AT3G14310 | 28.994 | 169 | 118 | 2 | 26 | 192 | 48 | 216 | 1.81e-19 | 85.9 |
MS.gene77725.t1 | AT3G49220 | 31.073 | 177 | 102 | 7 | 18 | 189 | 117 | 278 | 1.93e-15 | 73.9 |
MS.gene77725.t1 | AT3G49220 | 31.073 | 177 | 102 | 7 | 18 | 189 | 117 | 278 | 3.28e-15 | 73.6 |
MS.gene77725.t1 | AT3G49220 | 31.073 | 177 | 102 | 7 | 18 | 189 | 72 | 233 | 3.72e-15 | 73.6 |
MS.gene77725.t1 | AT3G05610 | 28.750 | 160 | 104 | 4 | 37 | 193 | 58 | 210 | 5.05e-15 | 73.2 |
MS.gene77725.t1 | AT5G27870 | 27.389 | 157 | 110 | 3 | 37 | 193 | 57 | 209 | 5.35e-15 | 73.2 |
MS.gene77725.t1 | AT3G47670 | 30.435 | 161 | 102 | 4 | 37 | 192 | 113 | 268 | 1.02e-13 | 68.2 |
MS.gene77725.t1 | AT3G14300 | 27.976 | 168 | 107 | 4 | 37 | 193 | 271 | 435 | 4.49e-12 | 64.7 |
MS.gene77725.t1 | AT3G05620 | 25.123 | 203 | 125 | 7 | 9 | 192 | 7 | 201 | 7.38e-11 | 60.8 |
Find 37 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATGCAAGAGTCACGTTT+AGG | 0.288631 | 4.4:-68505209 | None:intergenic |
CCTCTCTTGGCTTCAGTCCC+TGG | 0.289210 | 4.4:-68505272 | None:intergenic |
TTCATAGCTGCCGCCTCTCT+TGG | 0.353618 | 4.4:-68505285 | None:intergenic |
TGAATAATGTGTTTGATTGT+TGG | 0.360872 | 4.4:-68505080 | None:intergenic |
ACTGTTGTCTGAACATTACC+TGG | 0.391345 | 4.4:-68505483 | None:intergenic |
TGATGCAAGAGTCACGTTTA+GGG | 0.405900 | 4.4:-68505208 | None:intergenic |
AAGCACGCGATTTGTTTGAA+TGG | 0.408600 | 4.4:-68505172 | None:intergenic |
CAATGAGTGATGTACAAACT+TGG | 0.417018 | 4.4:+68505400 | MS.gene77725:CDS |
TCAATTGACTAGCAATGCTT+TGG | 0.428416 | 4.4:+68505530 | MS.gene77725:CDS |
GCGATTTGTTTGAATGGAAT+CGG | 0.429201 | 4.4:-68505166 | None:intergenic |
AATGTGTTTGATTGTTGGTA+TGG | 0.433048 | 4.4:-68505075 | None:intergenic |
GGTATGGTCTTTCAATTGCT+TGG | 0.442357 | 4.4:-68505059 | None:intergenic |
TTGGGTCAGTGCCGCTTTGA+CGG | 0.448660 | 4.4:+68505419 | MS.gene77725:CDS |
AAGAGAGGCGGCAGCTATGA+AGG | 0.468721 | 4.4:+68505287 | MS.gene77725:CDS |
TCGGTGAAATGAGTCGCCTT+AGG | 0.484339 | 4.4:+68505358 | MS.gene77725:CDS |
AGCGAGGTGTAGCATAGTCT+TGG | 0.500988 | 4.4:-68505132 | None:intergenic |
ACTCGAAATTTGAAGTCCTA+AGG | 0.502920 | 4.4:-68505374 | None:intergenic |
ATCAACTCTCTCGAAAAGCC+AGG | 0.512969 | 4.4:+68505254 | MS.gene77725:CDS |
GATGAACTACGAAGGTCTAT+CGG | 0.538573 | 4.4:+68505339 | MS.gene77725:CDS |
GGGACTGAAGCCAAGAGAGG+CGG | 0.548500 | 4.4:+68505275 | MS.gene77725:CDS |
TTCGAAGAGATTAATGCCCC+AGG | 0.583021 | 4.4:+68505465 | MS.gene77725:CDS |
AATGAGTGATGTACAAACTT+GGG | 0.584779 | 4.4:+68505401 | MS.gene77725:CDS |
CTGTTGTCTGAACATTACCT+GGG | 0.588535 | 4.4:-68505482 | None:intergenic |
AATGTTCAGACAACAGTGAG+AGG | 0.607570 | 4.4:+68505489 | MS.gene77725:CDS |
TGCATCAGCGAAATCAACCT+CGG | 0.612610 | 4.4:+68505224 | MS.gene77725:CDS |
CCAGGGACTGAAGCCAAGAG+AGG | 0.615497 | 4.4:+68505272 | MS.gene77725:CDS |
AGAGTGTGTAATGAAACTAA+AGG | 0.619326 | 4.4:-68505034 | None:intergenic |
ATCGGCGTGCTTCACTAGCG+AGG | 0.620746 | 4.4:-68505148 | None:intergenic |
ATTAATCTCTTCGAATCCGT+CGG | 0.641331 | 4.4:-68505457 | None:intergenic |
GATGAGAGTACTTGTACCGA+CGG | 0.647497 | 4.4:+68505441 | MS.gene77725:CDS |
TCAACTCTCTCGAAAAGCCA+GGG | 0.652947 | 4.4:+68505255 | MS.gene77725:CDS |
AGACCTTCGTAGTTCATCAA+CGG | 0.656485 | 4.4:-68505334 | None:intergenic |
GAGAGTTGATATCACAGCCG+AGG | 0.662740 | 4.4:-68505241 | None:intergenic |
ATGTTCAGACAACAGTGAGA+GGG | 0.673943 | 4.4:+68505490 | MS.gene77725:CDS |
AGTACTCTCATCCGTCAAAG+CGG | 0.677243 | 4.4:-68505430 | None:intergenic |
TGTTGTCTGAACATTACCTG+GGG | 0.722489 | 4.4:-68505481 | None:intergenic |
ACTCCGTTGATGAACTACGA+AGG | 0.736509 | 4.4:+68505331 | MS.gene77725:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAGGCAAAAATTATTAGA+AGG | - | chr4.4:68505020-68505039 | None:intergenic | 20.0% |
! | TGAATAATGTGTTTGATTGT+TGG | - | chr4.4:68505083-68505102 | None:intergenic | 25.0% |
AATGAGTGATGTACAAACTT+GGG | + | chr4.4:68505401-68505420 | MS.gene77725:CDS | 30.0% | |
AATGTGTTTGATTGTTGGTA+TGG | - | chr4.4:68505078-68505097 | None:intergenic | 30.0% | |
AGAGTGTGTAATGAAACTAA+AGG | - | chr4.4:68505037-68505056 | None:intergenic | 30.0% | |
ATTAATCTCTTCGAATCCGT+CGG | - | chr4.4:68505460-68505479 | None:intergenic | 35.0% | |
CAATGAGTGATGTACAAACT+TGG | + | chr4.4:68505400-68505419 | MS.gene77725:CDS | 35.0% | |
TCAATTGACTAGCAATGCTT+TGG | + | chr4.4:68505530-68505549 | MS.gene77725:CDS | 35.0% | |
! | ACTCGAAATTTGAAGTCCTA+AGG | - | chr4.4:68505377-68505396 | None:intergenic | 35.0% |
! | GCGATTTGTTTGAATGGAAT+CGG | - | chr4.4:68505169-68505188 | None:intergenic | 35.0% |
AATGTTCAGACAACAGTGAG+AGG | + | chr4.4:68505489-68505508 | MS.gene77725:CDS | 40.0% | |
ACTGTTGTCTGAACATTACC+TGG | - | chr4.4:68505486-68505505 | None:intergenic | 40.0% | |
AGACCTTCGTAGTTCATCAA+CGG | - | chr4.4:68505337-68505356 | None:intergenic | 40.0% | |
ATGTTCAGACAACAGTGAGA+GGG | + | chr4.4:68505490-68505509 | MS.gene77725:CDS | 40.0% | |
CTGTTGTCTGAACATTACCT+GGG | - | chr4.4:68505485-68505504 | None:intergenic | 40.0% | |
GATGAACTACGAAGGTCTAT+CGG | + | chr4.4:68505339-68505358 | MS.gene77725:CDS | 40.0% | |
GGTATGGTCTTTCAATTGCT+TGG | - | chr4.4:68505062-68505081 | None:intergenic | 40.0% | |
TGATGCAAGAGTCACGTTTA+GGG | - | chr4.4:68505211-68505230 | None:intergenic | 40.0% | |
TGTTGTCTGAACATTACCTG+GGG | - | chr4.4:68505484-68505503 | None:intergenic | 40.0% | |
! | AAGCACGCGATTTGTTTGAA+TGG | - | chr4.4:68505175-68505194 | None:intergenic | 40.0% |
! | TCGCGTGCTTTTAACATGTA+CGG | + | chr4.4:68505185-68505204 | MS.gene77725:CDS | 40.0% |
AGTACTCTCATCCGTCAAAG+CGG | - | chr4.4:68505433-68505452 | None:intergenic | 45.0% | |
ATCAACTCTCTCGAAAAGCC+AGG | + | chr4.4:68505254-68505273 | MS.gene77725:CDS | 45.0% | |
CTGATGCAAGAGTCACGTTT+AGG | - | chr4.4:68505212-68505231 | None:intergenic | 45.0% | |
TCAACTCTCTCGAAAAGCCA+GGG | + | chr4.4:68505255-68505274 | MS.gene77725:CDS | 45.0% | |
TGCATCAGCGAAATCAACCT+CGG | + | chr4.4:68505224-68505243 | MS.gene77725:CDS | 45.0% | |
TTCGAAGAGATTAATGCCCC+AGG | + | chr4.4:68505465-68505484 | MS.gene77725:CDS | 45.0% | |
! | ACTCCGTTGATGAACTACGA+AGG | + | chr4.4:68505331-68505350 | MS.gene77725:CDS | 45.0% |
!! | GATGAGAGTACTTGTACCGA+CGG | + | chr4.4:68505441-68505460 | MS.gene77725:CDS | 45.0% |
AGCGAGGTGTAGCATAGTCT+TGG | - | chr4.4:68505135-68505154 | None:intergenic | 50.0% | |
TCGGTGAAATGAGTCGCCTT+AGG | + | chr4.4:68505358-68505377 | MS.gene77725:CDS | 50.0% | |
!! | GAGAGTTGATATCACAGCCG+AGG | - | chr4.4:68505244-68505263 | None:intergenic | 50.0% |
AAGAGAGGCGGCAGCTATGA+AGG | + | chr4.4:68505287-68505306 | MS.gene77725:CDS | 55.0% | |
TTCATAGCTGCCGCCTCTCT+TGG | - | chr4.4:68505288-68505307 | None:intergenic | 55.0% | |
!! | TTGGGTCAGTGCCGCTTTGA+CGG | + | chr4.4:68505419-68505438 | MS.gene77725:CDS | 55.0% |
ATCGGCGTGCTTCACTAGCG+AGG | - | chr4.4:68505151-68505170 | None:intergenic | 60.0% | |
CCAGGGACTGAAGCCAAGAG+AGG | + | chr4.4:68505272-68505291 | MS.gene77725:CDS | 60.0% | |
CCTCTCTTGGCTTCAGTCCC+TGG | - | chr4.4:68505275-68505294 | None:intergenic | 60.0% | |
GGGACTGAAGCCAAGAGAGG+CGG | + | chr4.4:68505275-68505294 | MS.gene77725:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 68504994 | 68505587 | 68504994 | ID=MS.gene77725 |
chr4.4 | mRNA | 68504994 | 68505587 | 68504994 | ID=MS.gene77725.t1;Parent=MS.gene77725 |
chr4.4 | exon | 68504994 | 68505587 | 68504994 | ID=MS.gene77725.t1.exon1;Parent=MS.gene77725.t1 |
chr4.4 | CDS | 68504994 | 68505587 | 68504994 | ID=cds.MS.gene77725.t1;Parent=MS.gene77725.t1 |
Gene Sequence |
Protein sequence |