Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78092.t1 | XP_003628014.1 | 96.4 | 305 | 11 | 0 | 1 | 305 | 1 | 305 | 1.30E-124 | 456.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78092.t1 | Q14919 | 58.0 | 88 | 37 | 0 | 2 | 89 | 5 | 92 | 4.3e-23 | 110.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78092.t1 | G7LID3 | 96.4 | 305 | 11 | 0 | 1 | 305 | 1 | 305 | 9.5e-125 | 456.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene78092.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78092 | MS.gene42075 | PPI |
| MS.gene78092 | MS.gene82237 | PPI |
| MS.gene78092 | MS.gene77045 | PPI |
| MS.gene78092 | MS.gene48819 | PPI |
| MS.gene76728 | MS.gene78092 | PPI |
| MS.gene87743 | MS.gene78092 | PPI |
| MS.gene87064 | MS.gene78092 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78092.t1 | MTR_8g041420 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| MS.gene78092.t1 | MTR_3g012030 | 69.492 | 295 | 74 | 6 | 1 | 294 | 1 | 280 | 3.42e-127 | 364 |
| MS.gene78092.t1 | MTR_3g012030 | 67.626 | 278 | 74 | 6 | 18 | 294 | 1 | 263 | 1.50e-113 | 329 |
| MS.gene78092.t1 | MTR_3g012030 | 61.538 | 234 | 74 | 6 | 62 | 294 | 1 | 219 | 1.95e-78 | 238 |
| MS.gene78092.t1 | MTR_5g088760 | 46.230 | 305 | 137 | 9 | 1 | 293 | 1 | 290 | 6.66e-63 | 201 |
| MS.gene78092.t1 | MTR_5g088760 | 44.558 | 294 | 136 | 9 | 12 | 293 | 3 | 281 | 1.68e-54 | 179 |
| MS.gene78092.t1 | MTR_5g088760 | 43.403 | 288 | 136 | 9 | 18 | 293 | 1 | 273 | 4.05e-50 | 167 |
| MS.gene78092.t1 | MTR_2g023340 | 38.202 | 89 | 52 | 1 | 1 | 86 | 75 | 163 | 9.10e-12 | 64.3 |
| MS.gene78092.t1 | MTR_3g099180 | 37.975 | 79 | 49 | 0 | 8 | 86 | 55 | 133 | 1.26e-11 | 63.5 |
| MS.gene78092.t1 | MTR_3g099180 | 37.975 | 79 | 49 | 0 | 8 | 86 | 55 | 133 | 1.34e-11 | 63.5 |
| MS.gene78092.t1 | MTR_1g082660 | 37.179 | 78 | 49 | 0 | 9 | 86 | 102 | 179 | 1.74e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78092.t1 | AT3G12480 | 47.267 | 311 | 118 | 9 | 1 | 294 | 1 | 282 | 9.87e-69 | 216 |
| MS.gene78092.t1 | AT5G19490 | 62.857 | 140 | 39 | 4 | 1 | 137 | 1 | 130 | 8.76e-51 | 169 |
| MS.gene78092.t1 | AT1G54830 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 5.54e-12 | 64.7 |
| MS.gene78092.t1 | AT1G54830 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 5.54e-12 | 64.7 |
| MS.gene78092.t1 | AT1G54830 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 5.54e-12 | 64.7 |
| MS.gene78092.t1 | AT5G63470 | 37.975 | 79 | 49 | 0 | 8 | 86 | 78 | 156 | 1.30e-11 | 63.9 |
| MS.gene78092.t1 | AT5G63470 | 37.975 | 79 | 49 | 0 | 8 | 86 | 78 | 156 | 1.30e-11 | 63.9 |
| MS.gene78092.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.42e-11 | 63.5 |
| MS.gene78092.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.42e-11 | 63.5 |
| MS.gene78092.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.42e-11 | 63.5 |
| MS.gene78092.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.42e-11 | 63.5 |
| MS.gene78092.t1 | AT3G48590 | 37.975 | 79 | 49 | 0 | 8 | 86 | 65 | 143 | 1.55e-11 | 63.5 |
| MS.gene78092.t1 | AT1G56170 | 38.462 | 78 | 48 | 0 | 9 | 86 | 77 | 154 | 5.20e-11 | 61.6 |
| MS.gene78092.t1 | AT1G56170 | 38.462 | 78 | 48 | 0 | 9 | 86 | 77 | 154 | 5.20e-11 | 61.6 |
Find 85 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTATCTGTAGTATTT+TGG | 0.175216 | 8.4:-58037417 | None:intergenic |
| TGGCATTCAGATCAATATTA+AGG | 0.272737 | 8.4:-58037522 | None:intergenic |
| AGAACAGCAACATTATTCTT+TGG | 0.296672 | 8.4:-58037475 | None:intergenic |
| CAGTCATCATGAAGAAATTC+CGG | 0.308338 | 8.4:+58037666 | MS.gene78092:CDS |
| TCACAAATGCAATGAATTCA+TGG | 0.326874 | 8.4:-58035783 | None:intergenic |
| GGCTTCAGGATTAGCGGCTT+CGG | 0.328666 | 8.4:-58037605 | None:intergenic |
| GAACGAAAATGATGACAAAA+AGG | 0.328849 | 8.4:+58037549 | MS.gene78092:CDS |
| GGTATCGAGCTTCTTCTTCA+TGG | 0.346522 | 8.4:-58034593 | None:intergenic |
| GCTTCAGGATTAGCGGCTTC+GGG | 0.358509 | 8.4:-58037604 | None:intergenic |
| CCTTCTATTCCAGCTTGAGT+TGG | 0.372989 | 8.4:+58037255 | MS.gene78092:intron |
| ATTCATTACAGCTAAAGCTT+TGG | 0.394482 | 8.4:+58035697 | MS.gene78092:intron |
| CTTCTATTCCAGCTTGAGTT+GGG | 0.411737 | 8.4:+58037256 | MS.gene78092:intron |
| AGGGGAAGAGGCCGAGGTAG+AGG | 0.414973 | 8.4:+58037298 | MS.gene78092:CDS |
| AGCAACTCACAAACTAAAAC+AGG | 0.424990 | 8.4:-58035606 | None:intergenic |
| TCATGATGACTGCTGTCTGT+TGG | 0.443464 | 8.4:-58037655 | None:intergenic |
| CAGCACCACCAGCATCAGTA+TGG | 0.445315 | 8.4:-58036613 | None:intergenic |
| AGAGGCCGAGGTAGAGGAAG+AGG | 0.445372 | 8.4:+58037304 | MS.gene78092:CDS |
| TCAAAGAGAGGGACATCATC+AGG | 0.446129 | 8.4:+58037354 | MS.gene78092:CDS |
| GTTGGAGGAGGTTCAGAGAC+AGG | 0.449170 | 8.4:-58037637 | None:intergenic |
| CATCCATTCGCGTACCAAGC+TGG | 0.451375 | 8.4:-58037741 | None:intergenic |
| AATACTCACAGCAGGGAAAC+GGG | 0.451379 | 8.4:-58034614 | None:intergenic |
| AGTCATCATGAAGAAATTCC+GGG | 0.458892 | 8.4:+58037667 | MS.gene78092:CDS |
| AGTGAGTCAGAGTTATCAAC+AGG | 0.460372 | 8.4:-58037499 | None:intergenic |
| CGAGGTAGAGGAAGAGGAAG+AGG | 0.463525 | 8.4:+58037310 | MS.gene78092:CDS |
| ACAAATGTGGCTATACTTGA+TGG | 0.465433 | 8.4:+58037433 | MS.gene78092:CDS |
| CCATGACCATGGCTGTAGTC+AGG | 0.470467 | 8.4:-58036590 | None:intergenic |
| ATCCATTCGCGTACCAAGCT+GGG | 0.471142 | 8.4:-58037740 | None:intergenic |
| CGGCCTCTTCCCCTACCAGT+AGG | 0.471290 | 8.4:-58037289 | None:intergenic |
| AGAGGAAGAGGACGAGGTCG+AGG | 0.473350 | 8.4:+58037322 | MS.gene78092:CDS |
| AAATACTCACAGCAGGGAAA+CGG | 0.474814 | 8.4:-58034615 | None:intergenic |
| TGATGACTGCTGTCTGTTGG+AGG | 0.488755 | 8.4:-58037652 | None:intergenic |
| GGCAAGCTGCATCGATTCAA+TGG | 0.490429 | 8.4:-58037719 | None:intergenic |
| ATGAAATAACTCTTCAAAGA+GGG | 0.491656 | 8.4:+58035753 | MS.gene78092:CDS |
| GAAGAGTTATTTCATAAGTA+CGG | 0.508808 | 8.4:-58035745 | None:intergenic |
| TTGGGCCACACTAGCCCTAC+TGG | 0.513050 | 8.4:+58037274 | MS.gene78092:CDS |
| CCTTTCTGAGGTGGACAAGA+TGG | 0.513246 | 8.4:+58037696 | MS.gene78092:CDS |
| AGCCCTACTGGTAGGGGAAG+AGG | 0.516467 | 8.4:+58037286 | MS.gene78092:CDS |
| CCACACTAGCCCTACTGGTA+GGG | 0.519565 | 8.4:+58037279 | MS.gene78092:CDS |
| TCCGGGCTGGTCCCTTTCTG+AGG | 0.520532 | 8.4:+58037684 | MS.gene78092:CDS |
| GATGAAGATTATGACGAGGA+AGG | 0.523023 | 8.4:+58037769 | MS.gene78092:CDS |
| TAATGTATTTGACTTTCTGA+AGG | 0.523769 | 8.4:+58036550 | MS.gene78092:CDS |
| GGGCTGGTCCCTTTCTGAGG+TGG | 0.523889 | 8.4:+58037687 | MS.gene78092:CDS |
| TGGCTAACTTGCTGAACAGA+AGG | 0.535919 | 8.4:-58037397 | None:intergenic |
| CCCTACCAGTAGGGCTAGTG+TGG | 0.536396 | 8.4:-58037279 | None:intergenic |
| CCATCTTGTCCACCTCAGAA+AGG | 0.536812 | 8.4:-58037696 | None:intergenic |
| ACTGGTAGGGGAAGAGGCCG+AGG | 0.543075 | 8.4:+58037292 | MS.gene78092:CDS |
| ATGCAAGCTGATGAAGATGT+TGG | 0.543982 | 8.4:+58035564 | MS.gene78092:CDS |
| CATCTTGTCCACCTCAGAAA+GGG | 0.544706 | 8.4:-58037695 | None:intergenic |
| CAGTGATGAAGAAGCTAAGA+GGG | 0.545305 | 8.4:+58036774 | MS.gene78092:CDS |
| TTGGAGGAGGTTCAGAGACA+GGG | 0.547073 | 8.4:-58037636 | None:intergenic |
| TGCCCAGCTTGGTACGCGAA+TGG | 0.547995 | 8.4:+58037738 | MS.gene78092:CDS |
| TGACTGCTGTCTGTTGGAGG+AGG | 0.548420 | 8.4:-58037649 | None:intergenic |
| GGTCATGGCCATACTGATGC+TGG | 0.551049 | 8.4:+58036605 | MS.gene78092:CDS |
| CTCTTCCTCTTCCTCTACCT+CGG | 0.552926 | 8.4:-58037309 | None:intergenic |
| ATTAGCGGCTTCAGGATTAG+CGG | 0.555789 | 8.4:-58037611 | None:intergenic |
| CATGTTTGCAGGAAAGCTGC+AGG | 0.556670 | 8.4:+58036736 | MS.gene78092:intron |
| ACAGTGATGAAGAAGCTAAG+AGG | 0.558884 | 8.4:+58036773 | MS.gene78092:CDS |
| AGGAAAGCTGCAGGTGATGA+TGG | 0.561033 | 8.4:+58036745 | MS.gene78092:intron |
| TCGATGCAGCTTGCCCAGCT+TGG | 0.563617 | 8.4:+58037727 | MS.gene78092:CDS |
| ATGAAGATTATGACGAGGAA+GGG | 0.569841 | 8.4:+58037770 | MS.gene78092:CDS |
| CCTGACTACAGCCATGGTCA+TGG | 0.579794 | 8.4:+58036590 | MS.gene78092:CDS |
| GGCCTCTTCCCCTACCAGTA+GGG | 0.586705 | 8.4:-58037288 | None:intergenic |
| AGAGGAAGAGGAAGAGGACG+AGG | 0.587613 | 8.4:+58037316 | MS.gene78092:CDS |
| CACACTAGCCCTACTGGTAG+GGG | 0.591865 | 8.4:+58037280 | MS.gene78092:CDS |
| ATCATGAAGAAATTCCGGGC+TGG | 0.593923 | 8.4:+58037671 | MS.gene78092:CDS |
| ACCTCAGAAAGGGACCAGCC+CGG | 0.596293 | 8.4:-58037685 | None:intergenic |
| TATGAAATAACTCTTCAAAG+AGG | 0.600363 | 8.4:+58035752 | MS.gene78092:CDS |
| AGAAGCTAAGAGGGGCAAGA+TGG | 0.603158 | 8.4:+58036783 | MS.gene78092:CDS |
| TGAAATAACTCTTCAAAGAG+GGG | 0.609065 | 8.4:+58035754 | MS.gene78092:CDS |
| GGACGAGCTATTCAAAGAGA+GGG | 0.624122 | 8.4:+58037343 | MS.gene78092:CDS |
| AGAAGGACAAGGCTCAGACT+CGG | 0.625318 | 8.4:-58037380 | None:intergenic |
| AGGACGAGCTATTCAAAGAG+AGG | 0.625357 | 8.4:+58037342 | MS.gene78092:CDS |
| TCTGAAGGATGTAGTCAGCA+AGG | 0.625572 | 8.4:+58036565 | MS.gene78092:CDS |
| AAGGTTCCTGACTACAGCCA+TGG | 0.627628 | 8.4:+58036584 | MS.gene78092:CDS |
| TTTCATAAGTACGGTCACAA+AGG | 0.638025 | 8.4:-58035736 | None:intergenic |
| CATCAGTATGGCCATGACCA+TGG | 0.639178 | 8.4:-58036601 | None:intergenic |
| GCCACACTAGCCCTACTGGT+AGG | 0.654203 | 8.4:+58037278 | MS.gene78092:CDS |
| CATGGCCATACTGATGCTGG+TGG | 0.661901 | 8.4:+58036608 | MS.gene78092:CDS |
| TGGAGGAGGTTCAGAGACAG+GGG | 0.663154 | 8.4:-58037635 | None:intergenic |
| AGATGTTGGAAAGATAGCAT+TGG | 0.667342 | 8.4:+58035578 | MS.gene78092:CDS |
| AAATACTACAGATACAAATG+TGG | 0.667589 | 8.4:+58037420 | MS.gene78092:CDS |
| AGATGATGAAGATTATGACG+AGG | 0.685761 | 8.4:+58037765 | MS.gene78092:CDS |
| ACTTGCTGAACAGAAGGACA+AGG | 0.703007 | 8.4:-58037391 | None:intergenic |
| GGAGGAGGTTCAGAGACAGG+GGG | 0.712756 | 8.4:-58037634 | None:intergenic |
| AGTGATGAAGAAGCTAAGAG+GGG | 0.724764 | 8.4:+58036775 | MS.gene78092:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTAAGATAACATTTTT+TGG | + | chr8.4:58034771-58034790 | MS.gene78092:intron | 10.0% |
| !!! | TTTAATTTTAACCTAATTTT+TGG | + | chr8.4:58034980-58034999 | MS.gene78092:intron | 10.0% |
| !! | AAAAAAAATAATAGACTACT+TGG | - | chr8.4:58036429-58036448 | None:intergenic | 15.0% |
| !! | TCAAATCAAATTATCTAAAA+AGG | - | chr8.4:58036132-58036151 | None:intergenic | 15.0% |
| !!! | TACTTTTACTTCATTTTATT+TGG | + | chr8.4:58034938-58034957 | MS.gene78092:intron | 15.0% |
| !!! | TGAGTATATTTTTATTATGT+GGG | + | chr8.4:58034700-58034719 | MS.gene78092:intron | 15.0% |
| !!! | TTAATTTTGACCTAATTTTT+GGG | + | chr8.4:58034804-58034823 | MS.gene78092:intron | 15.0% |
| !!! | TTGAGTATATTTTTATTATG+TGG | + | chr8.4:58034699-58034718 | MS.gene78092:intron | 15.0% |
| !!! | TTTAATTTTGACCTAATTTT+TGG | + | chr8.4:58034803-58034822 | MS.gene78092:intron | 15.0% |
| !!! | TTTGTTATTTTATACTGTTT+TGG | + | chr8.4:58034669-58034688 | MS.gene78092:intron | 15.0% |
| !! | AAATCCAAAATTGGTATTAA+CGG | - | chr8.4:58035466-58035485 | None:intergenic | 20.0% |
| !! | AACAAAAAAGATCAAAACTT+TGG | - | chr8.4:58034655-58034674 | None:intergenic | 20.0% |
| !! | AAGTACAATATCCAAAAATT+AGG | - | chr8.4:58034994-58035013 | None:intergenic | 20.0% |
| !! | AATTCAAAGAAATCCAAAAT+TGG | - | chr8.4:58035475-58035494 | None:intergenic | 20.0% |
| !! | GTGTTTAAGAAATTAAAACA+CGG | - | chr8.4:58036843-58036862 | None:intergenic | 20.0% |
| !! | TAGTTAAAATTAATCAGTTC+AGG | - | chr8.4:58036391-58036410 | None:intergenic | 20.0% |
| !! | TCAAAAAATTCATAAGCATT+TGG | - | chr8.4:58036260-58036279 | None:intergenic | 20.0% |
| !! | TGAACCTAAAAATTTCATAT+TGG | + | chr8.4:58035254-58035273 | MS.gene78092:intron | 20.0% |
| !! | TGTTTAAGAAATTAAAACAC+GGG | - | chr8.4:58036842-58036861 | None:intergenic | 20.0% |
| !! | TTTATGTGCTTAATTGTATT+TGG | + | chr8.4:58034739-58034758 | MS.gene78092:intron | 20.0% |
| !!! | AACTCCAATATGAAATTTTT+AGG | - | chr8.4:58035261-58035280 | None:intergenic | 20.0% |
| !!! | ATATACAACCTTGTTTTTTA+TGG | - | chr8.4:58036931-58036950 | None:intergenic | 20.0% |
| !!! | TCATTTTATTTGGTAGTTTT+TGG | + | chr8.4:58034948-58034967 | MS.gene78092:intron | 20.0% |
| !!! | TGAAAGTATTGTTGTAATTT+GGG | - | chr8.4:58036972-58036991 | None:intergenic | 20.0% |
| !!! | TTACCTTTTTTTTAGTTGTT+TGG | + | chr8.4:58035289-58035308 | MS.gene78092:intron | 20.0% |
| !!! | TTGTTTTTTATGGAGAAAAA+AGG | - | chr8.4:58036921-58036940 | None:intergenic | 20.0% |
| !!! | TTTTATTGAACATGTGAAAA+TGG | + | chr8.4:58036156-58036175 | MS.gene78092:intron | 20.0% |
| !!! | TTTTTTCTCCATAAAAAACA+AGG | + | chr8.4:58036920-58036939 | MS.gene78092:intron | 20.0% |
| ! | AAAATTCATAAGCATTTGGT+TGG | - | chr8.4:58036256-58036275 | None:intergenic | 25.0% |
| ! | AAATACTACAGATACAAATG+TGG | + | chr8.4:58037420-58037439 | MS.gene78092:CDS | 25.0% |
| ! | AAGATTATCATCTACAACAA+TGG | + | chr8.4:58036067-58036086 | MS.gene78092:intron | 25.0% |
| ! | AAGCCAAACAACTAAAAAAA+AGG | - | chr8.4:58035295-58035314 | None:intergenic | 25.0% |
| ! | ATGAAATAACTCTTCAAAGA+GGG | + | chr8.4:58035753-58035772 | MS.gene78092:CDS | 25.0% |
| ! | ATTTGTCGAAATTTCATGTT+TGG | + | chr8.4:58037010-58037029 | MS.gene78092:intron | 25.0% |
| ! | CATCATAAAACCCAAAAATT+AGG | - | chr8.4:58034817-58034836 | None:intergenic | 25.0% |
| ! | GTTTAAGAAATTAAAACACG+GGG | - | chr8.4:58036841-58036860 | None:intergenic | 25.0% |
| ! | TAAAAAGGAAAACATCTAGA+AGG | - | chr8.4:58036117-58036136 | None:intergenic | 25.0% |
| ! | TAACTACATGTATATCAGAA+AGG | - | chr8.4:58036701-58036720 | None:intergenic | 25.0% |
| ! | TATGAAATAACTCTTCAAAG+AGG | + | chr8.4:58035752-58035771 | MS.gene78092:CDS | 25.0% |
| ! | TGTTGAAGATAAAATGAGTT+TGG | - | chr8.4:58036466-58036485 | None:intergenic | 25.0% |
| ! | TTCTAATATCTGTTCTTGTA+TGG | + | chr8.4:58036294-58036313 | MS.gene78092:intron | 25.0% |
| !! | AATTTCATGTTTGGAATACT+TGG | + | chr8.4:58037019-58037038 | MS.gene78092:intron | 25.0% |
| !! | CATTTGTATCTGTAGTATTT+TGG | - | chr8.4:58037420-58037439 | None:intergenic | 25.0% |
| !! | GAAGAGTTATTTCATAAGTA+CGG | - | chr8.4:58035748-58035767 | None:intergenic | 25.0% |
| !! | TAATGTATTTGACTTTCTGA+AGG | + | chr8.4:58036550-58036569 | MS.gene78092:CDS | 25.0% |
| !! | TTAGTTGTTTGGCTTAATTT+AGG | + | chr8.4:58035300-58035319 | MS.gene78092:intron | 25.0% |
| !!! | AATTGCTTTTTCCTAGAATA+AGG | - | chr8.4:58037203-58037222 | None:intergenic | 25.0% |
| !!! | ATGCTTGATTATTGATTTGA+TGG | + | chr8.4:58035041-58035060 | MS.gene78092:intron | 25.0% |
| !!! | GTGAAAGTATTGTTGTAATT+TGG | - | chr8.4:58036973-58036992 | None:intergenic | 25.0% |
| !!! | TGATGTTATCATTTTTTAGC+TGG | + | chr8.4:58035072-58035091 | MS.gene78092:intron | 25.0% |
| AAATAATAGACTACTTGGAC+AGG | - | chr8.4:58036424-58036443 | None:intergenic | 30.0% | |
| ACATGAAATTTCGACAAATG+AGG | - | chr8.4:58037009-58037028 | None:intergenic | 30.0% | |
| AGAAACACTATTTGATGTGT+TGG | + | chr8.4:58035507-58035526 | MS.gene78092:intron | 30.0% | |
| AGAACAGCAACATTATTCTT+TGG | - | chr8.4:58037478-58037497 | None:intergenic | 30.0% | |
| AGCTTGATTAATGAAGTTGA+TGG | + | chr8.4:58034841-58034860 | MS.gene78092:intron | 30.0% | |
| ATAAAATGAGTTTGGAAGGA+AGG | - | chr8.4:58036458-58036477 | None:intergenic | 30.0% | |
| ATGCTTGATCAAATAATGCA+CGG | + | chr8.4:58036354-58036373 | MS.gene78092:intron | 30.0% | |
| ATTCATTACAGCTAAAGCTT+TGG | + | chr8.4:58035697-58035716 | MS.gene78092:intron | 30.0% | |
| ATTCATTCCTACAAGATTTC+AGG | - | chr8.4:58037140-58037159 | None:intergenic | 30.0% | |
| GAACGAAAATGATGACAAAA+AGG | + | chr8.4:58037549-58037568 | MS.gene78092:CDS | 30.0% | |
| GAAGATAAAATGAGTTTGGA+AGG | - | chr8.4:58036462-58036481 | None:intergenic | 30.0% | |
| TCACAAATGCAATGAATTCA+TGG | - | chr8.4:58035786-58035805 | None:intergenic | 30.0% | |
| TGAAATAACTCTTCAAAGAG+GGG | + | chr8.4:58035754-58035773 | MS.gene78092:CDS | 30.0% | |
| TGGCATTCAGATCAATATTA+AGG | - | chr8.4:58037525-58037544 | None:intergenic | 30.0% | |
| TGTTGGAAACATAAATTTGC+AGG | + | chr8.4:58035524-58035543 | MS.gene78092:intron | 30.0% | |
| TTAGCTGCTTAGCTTAATTA+TGG | + | chr8.4:58034909-58034928 | MS.gene78092:intron | 30.0% | |
| ! | AAGACTTCAAACCTTCTTTT+TGG | - | chr8.4:58036653-58036672 | None:intergenic | 30.0% |
| ! | AGTTAGTTTGACCACTAAAA+TGG | - | chr8.4:58035844-58035863 | None:intergenic | 30.0% |
| ! | ATTATTTGATCAAGCATTGC+AGG | - | chr8.4:58036351-58036370 | None:intergenic | 30.0% |
| ! | CTTTTTCCTAGAATAAGGAA+TGG | - | chr8.4:58037198-58037217 | None:intergenic | 30.0% |
| ! | GCTTGATTAATGAAGTTGAT+GGG | + | chr8.4:58034842-58034861 | MS.gene78092:intron | 30.0% |
| ! | GTCATCATTTTCGTTCATAT+TGG | - | chr8.4:58037545-58037564 | None:intergenic | 30.0% |
| ! | GTTAGTTTGACCACTAAAAT+GGG | - | chr8.4:58035843-58035862 | None:intergenic | 30.0% |
| !! | TTCAAACCTTCTTTTTGGAA+TGG | - | chr8.4:58036648-58036667 | None:intergenic | 30.0% |
| !! | TTTTGAGTGATGTGGTATTA+TGG | + | chr8.4:58034865-58034884 | MS.gene78092:intron | 30.0% |
| AAACAGAAAATACTCACAGC+AGG | - | chr8.4:58034625-58034644 | None:intergenic | 35.0% | |
| AACAGAAAATACTCACAGCA+GGG | - | chr8.4:58034624-58034643 | None:intergenic | 35.0% | |
| ACAAATGTGGCTATACTTGA+TGG | + | chr8.4:58037433-58037452 | MS.gene78092:CDS | 35.0% | |
| ACATGTTGTTACACTCAATG+TGG | - | chr8.4:58035158-58035177 | None:intergenic | 35.0% | |
| ACTAACTCAAGAAATCAGAG+CGG | + | chr8.4:58035857-58035876 | MS.gene78092:intron | 35.0% | |
| AGACAATCCTGAAATCTTGT+AGG | + | chr8.4:58037130-58037149 | MS.gene78092:intron | 35.0% | |
| AGATGATGAAGATTATGACG+AGG | + | chr8.4:58037765-58037784 | MS.gene78092:CDS | 35.0% | |
| AGATGTTGGAAAGATAGCAT+TGG | + | chr8.4:58035578-58035597 | MS.gene78092:CDS | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | - | chr8.4:58035609-58035628 | None:intergenic | 35.0% | |
| AGTCATCATGAAGAAATTCC+GGG | + | chr8.4:58037667-58037686 | MS.gene78092:CDS | 35.0% | |
| ATCAGACCATTCCAAAAAGA+AGG | + | chr8.4:58036639-58036658 | MS.gene78092:CDS | 35.0% | |
| ATCTGTTCTTGTATGGCTTA+AGG | + | chr8.4:58036301-58036320 | MS.gene78092:intron | 35.0% | |
| ATGAAGATTATGACGAGGAA+GGG | + | chr8.4:58037770-58037789 | MS.gene78092:CDS | 35.0% | |
| CAGTCATCATGAAGAAATTC+CGG | + | chr8.4:58037666-58037685 | MS.gene78092:CDS | 35.0% | |
| CCAAAATTGGTATTAACGGT+GGG | - | chr8.4:58035462-58035481 | None:intergenic | 35.0% | |
| GAAACATAAATTTGCAGGCT+CGG | + | chr8.4:58035529-58035548 | MS.gene78092:intron | 35.0% | |
| GTTTACATTTGACACTCGTT+AGG | - | chr8.4:58036504-58036523 | None:intergenic | 35.0% | |
| TCCAAAATTGGTATTAACGG+TGG | - | chr8.4:58035463-58035482 | None:intergenic | 35.0% | |
| TGAACTCAATTTATCGTCAG+TGG | + | chr8.4:58035995-58036014 | MS.gene78092:intron | 35.0% | |
| TGTGATTGATACTGACGAAA+TGG | - | chr8.4:58036875-58036894 | None:intergenic | 35.0% | |
| TTCTAGCCATTCCTTATTCT+AGG | + | chr8.4:58037189-58037208 | MS.gene78092:intron | 35.0% | |
| TTTCATAAGTACGGTCACAA+AGG | - | chr8.4:58035739-58035758 | None:intergenic | 35.0% | |
| ! | TCTCTGATTTCCCATTTTAG+TGG | + | chr8.4:58035830-58035849 | MS.gene78092:intron | 35.0% |
| ! | TTGTCTTTTGCTTGCACAAA+TGG | - | chr8.4:58037116-58037135 | None:intergenic | 35.0% |
| !!! | CATTTTTTAGCTGGTTAGCT+TGG | + | chr8.4:58035081-58035100 | MS.gene78092:intron | 35.0% |
| !!! | GTTATGTTGACTTTTGTGTC+CGG | - | chr8.4:58035356-58035375 | None:intergenic | 35.0% |
| AAATACTCACAGCAGGGAAA+CGG | - | chr8.4:58034618-58034637 | None:intergenic | 40.0% | |
| AATCCAACATGTGTCAGTGT+TGG | - | chr8.4:58035414-58035433 | None:intergenic | 40.0% | |
| ACAGTGATGAAGAAGCTAAG+AGG | + | chr8.4:58036773-58036792 | MS.gene78092:CDS | 40.0% | |
| AGTGAGTCAGAGTTATCAAC+AGG | - | chr8.4:58037502-58037521 | None:intergenic | 40.0% | |
| AGTGATGAAGAAGCTAAGAG+GGG | + | chr8.4:58036775-58036794 | MS.gene78092:CDS | 40.0% | |
| ATGCAAGCTGATGAAGATGT+TGG | + | chr8.4:58035564-58035583 | MS.gene78092:CDS | 40.0% | |
| CAGTGATGAAGAAGCTAAGA+GGG | + | chr8.4:58036774-58036793 | MS.gene78092:CDS | 40.0% | |
| CTGACACATGTTGGATTCTT+TGG | + | chr8.4:58035417-58035436 | MS.gene78092:intron | 40.0% | |
| CTTCTATTCCAGCTTGAGTT+GGG | + | chr8.4:58037256-58037275 | MS.gene78092:intron | 40.0% | |
| CTTTCCTGCAAACATGGTTT+AGG | - | chr8.4:58036732-58036751 | None:intergenic | 40.0% | |
| GATCAAATAATGCACGGCTT+GGG | + | chr8.4:58036360-58036379 | MS.gene78092:intron | 40.0% | |
| GATGAAGATTATGACGAGGA+AGG | + | chr8.4:58037769-58037788 | MS.gene78092:CDS | 40.0% | |
| GGGGCTTTCACACTAATATA+AGG | - | chr8.4:58036822-58036841 | None:intergenic | 40.0% | |
| TCATAGACTATGTAGCACTG+AGG | - | chr8.4:58035237-58035256 | None:intergenic | 40.0% | |
| TGATCAAATAATGCACGGCT+TGG | + | chr8.4:58036359-58036378 | MS.gene78092:intron | 40.0% | |
| TTATCGTCAGTGGTCATTGT+TGG | + | chr8.4:58036005-58036024 | MS.gene78092:intron | 40.0% | |
| ! | AACTTTAAGCTGCTGTTTGC+TGG | + | chr8.4:58035653-58035672 | MS.gene78092:intron | 40.0% |
| ! | CCCACCGTTAATACCAATTT+TGG | + | chr8.4:58035459-58035478 | MS.gene78092:intron | 40.0% |
| !! | TTAGCTGGTTAGCTTGGTTT+GGG | + | chr8.4:58035087-58035106 | MS.gene78092:intron | 40.0% |
| !! | TTTAGCTGGTTAGCTTGGTT+TGG | + | chr8.4:58035086-58035105 | MS.gene78092:intron | 40.0% |
| !!! | TTGATGGGTTTTGAGTGATG+TGG | + | chr8.4:58034857-58034876 | MS.gene78092:intron | 40.0% |
| AATACTCACAGCAGGGAAAC+GGG | - | chr8.4:58034617-58034636 | None:intergenic | 45.0% | |
| AGAGCGGTGTGTCTCTATAA+TGG | + | chr8.4:58035873-58035892 | MS.gene78092:intron | 45.0% | |
| AGGACGAGCTATTCAAAGAG+AGG | + | chr8.4:58037342-58037361 | MS.gene78092:CDS | 45.0% | |
| ATCATGAAGAAATTCCGGGC+TGG | + | chr8.4:58037671-58037690 | MS.gene78092:CDS | 45.0% | |
| ATTAGCGGCTTCAGGATTAG+CGG | - | chr8.4:58037614-58037633 | None:intergenic | 45.0% | |
| CAATATCTGCAGCCAATGAG+CGG | + | chr8.4:58036187-58036206 | MS.gene78092:intron | 45.0% | |
| CATCTTGTCCACCTCAGAAA+GGG | - | chr8.4:58037698-58037717 | None:intergenic | 45.0% | |
| CCAACTCAAGCTGGAATAGA+AGG | - | chr8.4:58037258-58037277 | None:intergenic | 45.0% | |
| CCTTCTATTCCAGCTTGAGT+TGG | + | chr8.4:58037255-58037274 | MS.gene78092:intron | 45.0% | |
| GCATGTGTCAGTATCGTGTT+TGG | + | chr8.4:58035377-58035396 | MS.gene78092:intron | 45.0% | |
| GGACGAGCTATTCAAAGAGA+GGG | + | chr8.4:58037343-58037362 | MS.gene78092:CDS | 45.0% | |
| TCAAAGAGAGGGACATCATC+AGG | + | chr8.4:58037354-58037373 | MS.gene78092:CDS | 45.0% | |
| TCATGATGACTGCTGTCTGT+TGG | - | chr8.4:58037658-58037677 | None:intergenic | 45.0% | |
| TCGATGTAGGACACTTGACA+CGG | - | chr8.4:58035201-58035220 | None:intergenic | 45.0% | |
| TCTGAAGGATGTAGTCAGCA+AGG | + | chr8.4:58036565-58036584 | MS.gene78092:CDS | 45.0% | |
| TGCACCTAAACCATGTTTGC+AGG | + | chr8.4:58036725-58036744 | MS.gene78092:intron | 45.0% | |
| TGTCCAACACTGACACATGT+TGG | + | chr8.4:58035408-58035427 | MS.gene78092:intron | 45.0% | |
| TGTCCTACATCGACACATGT+TGG | + | chr8.4:58035208-58035227 | MS.gene78092:intron | 45.0% | |
| ! | ACTTGCTGAACAGAAGGACA+AGG | - | chr8.4:58037394-58037413 | None:intergenic | 45.0% |
| ! | CATCCAACATGTGTCGATGT+AGG | - | chr8.4:58035214-58035233 | None:intergenic | 45.0% |
| !! | CAGTATCGTGTTTGGTGTCT+AGG | + | chr8.4:58035385-58035404 | MS.gene78092:intron | 45.0% |
| !! | TGGCTAACTTGCTGAACAGA+AGG | - | chr8.4:58037400-58037419 | None:intergenic | 45.0% |
| AAGGTTCCTGACTACAGCCA+TGG | + | chr8.4:58036584-58036603 | MS.gene78092:CDS | 50.0% | |
| AGAAGCTAAGAGGGGCAAGA+TGG | + | chr8.4:58036783-58036802 | MS.gene78092:CDS | 50.0% | |
| AGAAGGACAAGGCTCAGACT+CGG | - | chr8.4:58037383-58037402 | None:intergenic | 50.0% | |
| AGGAAAGCTGCAGGTGATGA+TGG | + | chr8.4:58036745-58036764 | MS.gene78092:intron | 50.0% | |
| ATCCATTCGCGTACCAAGCT+GGG | - | chr8.4:58037743-58037762 | None:intergenic | 50.0% | |
| CATCAGTATGGCCATGACCA+TGG | - | chr8.4:58036604-58036623 | None:intergenic | 50.0% | |
| CATGTTTGCAGGAAAGCTGC+AGG | + | chr8.4:58036736-58036755 | MS.gene78092:intron | 50.0% | |
| CCATCTTGTCCACCTCAGAA+AGG | - | chr8.4:58037699-58037718 | None:intergenic | 50.0% | |
| CTCTTCCTCTTCCTCTACCT+CGG | - | chr8.4:58037312-58037331 | None:intergenic | 50.0% | |
| CTGCAGCTTTCCTGCAAACA+TGG | - | chr8.4:58036738-58036757 | None:intergenic | 50.0% | |
| GTGAAGCGCACACACTATAC+CGG | + | chr8.4:58035334-58035353 | MS.gene78092:intron | 50.0% | |
| TGATGACTGCTGTCTGTTGG+AGG | - | chr8.4:58037655-58037674 | None:intergenic | 50.0% | |
| TGTCACATGAGACCGCTCAT+TGG | - | chr8.4:58036202-58036221 | None:intergenic | 50.0% | |
| TTCAGAGACAGGGGGATTAG+CGG | - | chr8.4:58037629-58037648 | None:intergenic | 50.0% | |
| TTGGAGGAGGTTCAGAGACA+GGG | - | chr8.4:58037639-58037658 | None:intergenic | 50.0% | |
| !! | CCTTTCTGAGGTGGACAAGA+TGG | + | chr8.4:58037696-58037715 | MS.gene78092:CDS | 50.0% |
| !! | GGCAAGCTGCATCGATTCAA+TGG | - | chr8.4:58037722-58037741 | None:intergenic | 50.0% |
| AGAGGAAGAGGAAGAGGACG+AGG | + | chr8.4:58037316-58037335 | MS.gene78092:CDS | 55.0% | |
| CACACTAGCCCTACTGGTAG+GGG | + | chr8.4:58037280-58037299 | MS.gene78092:CDS | 55.0% | |
| CAGCACCACCAGCATCAGTA+TGG | - | chr8.4:58036616-58036635 | None:intergenic | 55.0% | |
| CATCCATTCGCGTACCAAGC+TGG | - | chr8.4:58037744-58037763 | None:intergenic | 55.0% | |
| CATGGCCATACTGATGCTGG+TGG | + | chr8.4:58036608-58036627 | MS.gene78092:CDS | 55.0% | |
| CCACACTAGCCCTACTGGTA+GGG | + | chr8.4:58037279-58037298 | MS.gene78092:CDS | 55.0% | |
| CCATGACCATGGCTGTAGTC+AGG | - | chr8.4:58036593-58036612 | None:intergenic | 55.0% | |
| CCTGACTACAGCCATGGTCA+TGG | + | chr8.4:58036590-58036609 | MS.gene78092:CDS | 55.0% | |
| CGAGGTAGAGGAAGAGGAAG+AGG | + | chr8.4:58037310-58037329 | MS.gene78092:CDS | 55.0% | |
| GGTCATGGCCATACTGATGC+TGG | + | chr8.4:58036605-58036624 | MS.gene78092:CDS | 55.0% | |
| GTTGGAGGAGGTTCAGAGAC+AGG | - | chr8.4:58037640-58037659 | None:intergenic | 55.0% | |
| TAGTGTGGCCCAACTCAAGC+TGG | - | chr8.4:58037267-58037286 | None:intergenic | 55.0% | |
| TGACTGCTGTCTGTTGGAGG+AGG | - | chr8.4:58037652-58037671 | None:intergenic | 55.0% | |
| TGGAGGAGGTTCAGAGACAG+GGG | - | chr8.4:58037638-58037657 | None:intergenic | 55.0% | |
| ! | GCTTCAGGATTAGCGGCTTC+GGG | - | chr8.4:58037607-58037626 | None:intergenic | 55.0% |
| ! | GGCTTCAGGATTAGCGGCTT+CGG | - | chr8.4:58037608-58037627 | None:intergenic | 55.0% |
| ACCTCAGAAAGGGACCAGCC+CGG | - | chr8.4:58037688-58037707 | None:intergenic | 60.0% | |
| AGAGGAAGAGGACGAGGTCG+AGG | + | chr8.4:58037322-58037341 | MS.gene78092:CDS | 60.0% | |
| AGAGGCCGAGGTAGAGGAAG+AGG | + | chr8.4:58037304-58037323 | MS.gene78092:CDS | 60.0% | |
| AGCCCTACTGGTAGGGGAAG+AGG | + | chr8.4:58037286-58037305 | MS.gene78092:CDS | 60.0% | |
| GCCACACTAGCCCTACTGGT+AGG | + | chr8.4:58037278-58037297 | MS.gene78092:CDS | 60.0% | |
| GGAGGAGGTTCAGAGACAGG+GGG | - | chr8.4:58037637-58037656 | None:intergenic | 60.0% | |
| GGCCTCTTCCCCTACCAGTA+GGG | - | chr8.4:58037291-58037310 | None:intergenic | 60.0% | |
| TCGATGCAGCTTGCCCAGCT+TGG | + | chr8.4:58037727-58037746 | MS.gene78092:CDS | 60.0% | |
| TGCCCAGCTTGGTACGCGAA+TGG | + | chr8.4:58037738-58037757 | MS.gene78092:CDS | 60.0% | |
| TTGGGCCACACTAGCCCTAC+TGG | + | chr8.4:58037274-58037293 | MS.gene78092:CDS | 60.0% | |
| ! | ACAGGGGGATTAGCGGCTTC+AGG | - | chr8.4:58037622-58037641 | None:intergenic | 60.0% |
| ! | CCCTACCAGTAGGGCTAGTG+TGG | - | chr8.4:58037282-58037301 | None:intergenic | 60.0% |
| ACTGGTAGGGGAAGAGGCCG+AGG | + | chr8.4:58037292-58037311 | MS.gene78092:CDS | 65.0% | |
| AGGGGAAGAGGCCGAGGTAG+AGG | + | chr8.4:58037298-58037317 | MS.gene78092:CDS | 65.0% | |
| CGGCCTCTTCCCCTACCAGT+AGG | - | chr8.4:58037292-58037311 | None:intergenic | 65.0% | |
| !! | GGGCTGGTCCCTTTCTGAGG+TGG | + | chr8.4:58037687-58037706 | MS.gene78092:CDS | 65.0% |
| !! | TCCGGGCTGGTCCCTTTCTG+AGG | + | chr8.4:58037684-58037703 | MS.gene78092:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 58034595 | 58037795 | 58034595 | ID=MS.gene78092 |
| chr8.4 | mRNA | 58034595 | 58037795 | 58034595 | ID=MS.gene78092.t1;Parent=MS.gene78092 |
| chr8.4 | exon | 58034595 | 58034627 | 58034595 | ID=MS.gene78092.t1.exon1;Parent=MS.gene78092.t1 |
| chr8.4 | CDS | 58034595 | 58034627 | 58034595 | ID=cds.MS.gene78092.t1;Parent=MS.gene78092.t1 |
| chr8.4 | exon | 58035546 | 58035618 | 58035546 | ID=MS.gene78092.t1.exon2;Parent=MS.gene78092.t1 |
| chr8.4 | CDS | 58035546 | 58035618 | 58035546 | ID=cds.MS.gene78092.t1;Parent=MS.gene78092.t1 |
| chr8.4 | exon | 58035708 | 58035801 | 58035708 | ID=MS.gene78092.t1.exon3;Parent=MS.gene78092.t1 |
| chr8.4 | CDS | 58035708 | 58035801 | 58035708 | ID=cds.MS.gene78092.t1;Parent=MS.gene78092.t1 |
| chr8.4 | exon | 58036529 | 58036660 | 58036529 | ID=MS.gene78092.t1.exon4;Parent=MS.gene78092.t1 |
| chr8.4 | CDS | 58036529 | 58036660 | 58036529 | ID=cds.MS.gene78092.t1;Parent=MS.gene78092.t1 |
| chr8.4 | exon | 58036747 | 58036804 | 58036747 | ID=MS.gene78092.t1.exon5;Parent=MS.gene78092.t1 |
| chr8.4 | CDS | 58036747 | 58036804 | 58036747 | ID=cds.MS.gene78092.t1;Parent=MS.gene78092.t1 |
| chr8.4 | exon | 58037268 | 58037795 | 58037268 | ID=MS.gene78092.t1.exon6;Parent=MS.gene78092.t1 |
| chr8.4 | CDS | 58037268 | 58037795 | 58037268 | ID=cds.MS.gene78092.t1;Parent=MS.gene78092.t1 |
| Gene Sequence |
| Protein sequence |
