Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78117.t1 | RHN60550.1 | 100 | 430 | 0 | 0 | 1 | 430 | 1 | 430 | 1.80E-260 | 907.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78117.t1 | Q8H0W2 | 88.2 | 424 | 50 | 0 | 1 | 424 | 1 | 424 | 2.3e-232 | 805.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78117.t1 | A0A396I4K7 | 100.0 | 430 | 0 | 0 | 1 | 430 | 1 | 430 | 1.3e-260 | 907.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene78117 | MS.gene73119 | PPI |
MS.gene78117 | MS.gene022334 | PPI |
MS.gene78117 | MS.gene68716 | PPI |
MS.gene78117 | MS.gene063067 | PPI |
MS.gene78117 | MS.gene70661 | PPI |
MS.gene78117 | MS.gene014181 | PPI |
MS.gene78117 | MS.gene064542 | PPI |
MS.gene68113 | MS.gene78117 | PPI |
MS.gene035805 | MS.gene78117 | PPI |
MS.gene25997 | MS.gene78117 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78117.t1 | MTR_4g055080 | 99.767 | 430 | 1 | 0 | 1 | 430 | 1 | 430 | 0.0 | 894 |
MS.gene78117.t1 | MTR_4g055080 | 99.753 | 405 | 1 | 0 | 26 | 430 | 1 | 405 | 0.0 | 841 |
MS.gene78117.t1 | MTR_3g118535 | 59.124 | 411 | 166 | 2 | 4 | 413 | 17 | 426 | 3.01e-175 | 499 |
MS.gene78117.t1 | MTR_3g077160 | 55.116 | 430 | 180 | 3 | 4 | 429 | 25 | 445 | 2.50e-174 | 496 |
MS.gene78117.t1 | MTR_5g004640 | 61.680 | 381 | 145 | 1 | 4 | 384 | 20 | 399 | 1.02e-172 | 493 |
MS.gene78117.t1 | MTR_3g077120 | 56.707 | 164 | 67 | 1 | 4 | 163 | 25 | 188 | 4.64e-63 | 202 |
MS.gene78117.t1 | MTR_2g087270 | 28.523 | 298 | 185 | 8 | 59 | 342 | 85 | 368 | 9.43e-26 | 108 |
MS.gene78117.t1 | MTR_4g111985 | 28.870 | 239 | 158 | 7 | 136 | 364 | 323 | 559 | 7.96e-21 | 95.5 |
MS.gene78117.t1 | MTR_4g111985 | 28.315 | 279 | 175 | 9 | 109 | 364 | 322 | 598 | 9.52e-21 | 95.1 |
MS.gene78117.t1 | MTR_4g109500 | 25.566 | 309 | 210 | 9 | 24 | 318 | 38 | 340 | 2.72e-20 | 94.0 |
MS.gene78117.t1 | MTR_4g109500 | 25.566 | 309 | 210 | 9 | 24 | 318 | 38 | 340 | 3.08e-20 | 93.6 |
MS.gene78117.t1 | MTR_4g111985 | 29.048 | 210 | 132 | 6 | 109 | 301 | 283 | 492 | 7.11e-18 | 86.3 |
MS.gene78117.t1 | MTR_1g016440 | 25.862 | 290 | 191 | 7 | 24 | 305 | 52 | 325 | 1.04e-17 | 84.3 |
MS.gene78117.t1 | MTR_8g093800 | 29.677 | 155 | 105 | 2 | 136 | 288 | 198 | 350 | 8.95e-16 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78117.t1 | AT3G44680 | 88.208 | 424 | 50 | 0 | 1 | 424 | 1 | 424 | 0.0 | 798 |
MS.gene78117.t1 | AT4G38130 | 60.705 | 397 | 155 | 1 | 4 | 400 | 16 | 411 | 1.19e-176 | 502 |
MS.gene78117.t1 | AT4G38130 | 60.705 | 397 | 155 | 1 | 4 | 400 | 16 | 411 | 1.84e-176 | 503 |
MS.gene78117.t1 | AT5G63110 | 55.425 | 424 | 177 | 4 | 4 | 424 | 18 | 432 | 5.45e-171 | 488 |
MS.gene78117.t1 | AT5G35600 | 51.688 | 385 | 175 | 3 | 4 | 382 | 9 | 388 | 1.36e-139 | 405 |
MS.gene78117.t1 | AT3G44490 | 81.290 | 155 | 29 | 0 | 270 | 424 | 2 | 156 | 1.05e-90 | 271 |
MS.gene78117.t1 | AT3G44660 | 72.903 | 155 | 26 | 1 | 270 | 424 | 2 | 140 | 4.75e-76 | 233 |
MS.gene78117.t1 | AT1G08460 | 29.333 | 300 | 164 | 12 | 59 | 334 | 74 | 349 | 9.41e-24 | 102 |
MS.gene78117.t1 | AT3G18520 | 28.750 | 240 | 162 | 5 | 136 | 366 | 276 | 515 | 4.94e-23 | 101 |
MS.gene78117.t1 | AT3G18520 | 28.750 | 240 | 162 | 5 | 136 | 366 | 276 | 515 | 5.50e-23 | 101 |
MS.gene78117.t1 | AT3G18520 | 28.750 | 240 | 162 | 5 | 136 | 366 | 276 | 515 | 6.39e-23 | 101 |
MS.gene78117.t1 | AT1G08460 | 30.769 | 221 | 121 | 8 | 59 | 264 | 74 | 277 | 3.01e-21 | 94.4 |
MS.gene78117.t1 | AT5G61060 | 26.154 | 325 | 213 | 9 | 21 | 327 | 43 | 358 | 2.59e-20 | 94.0 |
MS.gene78117.t1 | AT5G61060 | 26.205 | 332 | 208 | 10 | 21 | 327 | 43 | 362 | 1.94e-19 | 91.3 |
MS.gene78117.t1 | AT3G18520 | 31.765 | 170 | 112 | 4 | 136 | 301 | 276 | 445 | 2.22e-19 | 90.5 |
MS.gene78117.t1 | AT5G61070 | 28.634 | 227 | 149 | 7 | 104 | 318 | 157 | 382 | 8.40e-19 | 89.4 |
MS.gene78117.t1 | AT5G26040 | 24.771 | 327 | 216 | 8 | 3 | 313 | 72 | 384 | 7.21e-17 | 82.4 |
MS.gene78117.t1 | AT4G33470 | 27.778 | 180 | 117 | 4 | 136 | 306 | 201 | 376 | 1.86e-14 | 75.5 |
Find 95 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGATTATATCAAATATTT+TGG | 0.129835 | 4.4:+47938130 | MS.gene78117:CDS |
ATCCTTGAGTGGGACATTTA+TGG | 0.171950 | 4.4:-47936655 | None:intergenic |
TCCAGAGGCTTCACATTTCT+TGG | 0.236546 | 4.4:-47935525 | None:intergenic |
CATAATCAGCGGAGTGAAAC+TGG | 0.247646 | 4.4:-47933940 | None:intergenic |
GAAATTTAACGTGCCCTTAC+TGG | 0.274730 | 4.4:+47937069 | MS.gene78117:CDS |
TATGGAGATTTGTTCTTTCC+TGG | 0.276442 | 4.4:+47936091 | MS.gene78117:CDS |
TTTACCTTATTGAAGGAAAT+AGG | 0.288112 | 4.4:+47936609 | MS.gene78117:intron |
AAACACGGGGATGATGTTTA+AGG | 0.303061 | 4.4:-47935589 | None:intergenic |
CTGCCACAGGTCACTGGAGG+TGG | 0.304425 | 4.4:+47937162 | MS.gene78117:intron |
GATTTGTTCTTTCCTGGAAC+AGG | 0.317968 | 4.4:+47936097 | MS.gene78117:CDS |
TTACGATCATTGCGTTCATC+AGG | 0.331015 | 4.4:-47939053 | None:intergenic |
ACCTTAGCGTCCCCTGTTCC+AGG | 0.342837 | 4.4:-47936109 | None:intergenic |
TGTGTGATATTGCTATAAAC+TGG | 0.350639 | 4.4:+47935483 | MS.gene78117:CDS |
TTGATATGTTTCAACTACTT+TGG | 0.359745 | 4.4:-47936835 | None:intergenic |
TGCTTCAATCTCTCTATTGA+TGG | 0.366690 | 4.4:+47936915 | MS.gene78117:CDS |
TGAAACTGGGCAAGCTCAAC+AGG | 0.371973 | 4.4:-47933926 | None:intergenic |
GCAAAGACGGTGAGGCTTCA+TGG | 0.377990 | 4.4:-47933705 | None:intergenic |
TGAGGCTTCATGGGATGATT+TGG | 0.378451 | 4.4:-47933695 | None:intergenic |
ATGTCGGTAGTGTTTACTTT+GGG | 0.379892 | 4.4:+47933672 | MS.gene78117:CDS |
TTCACTTGCTGGAGATCGCT+TGG | 0.387440 | 4.4:+47936890 | MS.gene78117:CDS |
GCCACAGGTCACTGGAGGTG+GGG | 0.391923 | 4.4:+47937164 | MS.gene78117:intron |
TTACATACTATAAACCCATT+TGG | 0.393408 | 4.4:-47938175 | None:intergenic |
CACACAGTTTATTGTTCAAT+CGG | 0.402420 | 4.4:-47935466 | None:intergenic |
TGTGGAGCAGATTCACTTGC+TGG | 0.405467 | 4.4:+47936879 | MS.gene78117:CDS |
CGATGTTGGACAGTTGAAAC+TGG | 0.409349 | 4.4:+47937210 | MS.gene78117:CDS |
ATGTACGCTGGTGGAACTAT+AGG | 0.411665 | 4.4:+47934713 | MS.gene78117:CDS |
TGCAAATCTTCATCGATATC+AGG | 0.420793 | 4.4:-47939026 | None:intergenic |
ACCTCTTGCATTTGCACACT+CGG | 0.424269 | 4.4:-47938490 | None:intergenic |
TGCTCCACACTGTAGAACTA+TGG | 0.426928 | 4.4:-47936865 | None:intergenic |
AAGAAAATGTTGCTCGATGT+TGG | 0.430863 | 4.4:+47937196 | MS.gene78117:CDS |
GCACTTGTTCTCAGATGAAC+TGG | 0.435940 | 4.4:+47933997 | MS.gene78117:CDS |
GAGAACAAGTGCTGAGTGTC+AGG | 0.438817 | 4.4:-47933986 | None:intergenic |
TATTTGATATAATCATTCTC+CGG | 0.443629 | 4.4:-47938124 | None:intergenic |
GGAATCTTCAATGAGAAGTC+TGG | 0.444140 | 4.4:-47938154 | None:intergenic |
TGCCACAGGTCACTGGAGGT+GGG | 0.444281 | 4.4:+47937163 | MS.gene78117:intron |
GAAGTAAGAGATTCTGTCCT+TGG | 0.445912 | 4.4:-47932294 | None:intergenic |
TTCTCATTGAAGATTCCAAA+TGG | 0.449914 | 4.4:+47938160 | MS.gene78117:CDS |
GTGATATAAACCCACCAGTA+AGG | 0.450161 | 4.4:-47937083 | None:intergenic |
GGATTTCTGCCACAGGTCAC+TGG | 0.455793 | 4.4:+47937156 | MS.gene78117:intron |
TCACTTGCTGGAGATCGCTT+GGG | 0.471855 | 4.4:+47936891 | MS.gene78117:CDS |
CCACAGGTCACTGGAGGTGG+GGG | 0.478612 | 4.4:+47937165 | MS.gene78117:intron |
CAATGACAATGATCATCAAA+TGG | 0.486694 | 4.4:+47939216 | MS.gene78117:CDS |
GATGTCGGTAGTGTTTACTT+TGG | 0.488063 | 4.4:+47933671 | MS.gene78117:CDS |
GCCAAGAAATGTGAAGCCTC+TGG | 0.499411 | 4.4:+47935524 | MS.gene78117:CDS |
ATTTGATATAATCATTCTCC+GGG | 0.505784 | 4.4:-47938123 | None:intergenic |
AACTGGAGTTCTTCTAGATA+CGG | 0.506230 | 4.4:+47937227 | MS.gene78117:CDS |
CAAAGACGGTGAGGCTTCAT+GGG | 0.508396 | 4.4:-47933704 | None:intergenic |
TCTTTCTTGTGCAGAGATCC+CGG | 0.510195 | 4.4:+47938105 | MS.gene78117:intron |
TCTCATTGAAGATTCCAAAT+GGG | 0.518088 | 4.4:+47938161 | MS.gene78117:CDS |
AGGAAATAGGAGAAAGAGAA+GGG | 0.519944 | 4.4:+47936622 | MS.gene78117:intron |
AAGCTTTCTACTTCACTGAC+AGG | 0.519986 | 4.4:+47935654 | MS.gene78117:CDS |
TCCTGGAACAGGGGACGCTA+AGG | 0.526951 | 4.4:+47936108 | MS.gene78117:CDS |
ATATCAGGAATGTAGAAGTC+GGG | 0.536873 | 4.4:-47939011 | None:intergenic |
CACTGTAGAACTATGGCACC+AGG | 0.541830 | 4.4:-47936858 | None:intergenic |
AAGGAAATAGGAGAAAGAGA+AGG | 0.544704 | 4.4:+47936621 | MS.gene78117:intron |
ATATGATCTTCATAAGAAGA+TGG | 0.545697 | 4.4:+47933751 | MS.gene78117:CDS |
ATTTGTTCTTTCCTGGAACA+GGG | 0.546234 | 4.4:+47936098 | MS.gene78117:CDS |
CTAGATACGGAGCTTCCAAA+TGG | 0.552040 | 4.4:+47937240 | MS.gene78117:CDS |
TATATCAATATATAAAACAC+GGG | 0.556785 | 4.4:-47935603 | None:intergenic |
TGCCATAAATGTCCCACTCA+AGG | 0.557730 | 4.4:+47936653 | MS.gene78117:CDS |
TGATATAAACCCACCAGTAA+GGG | 0.558005 | 4.4:-47937082 | None:intergenic |
TTTCATGTTGCAGGTGATGT+CGG | 0.564367 | 4.4:+47933656 | MS.gene78117:intron |
CTATATCAATATATAAAACA+CGG | 0.565817 | 4.4:-47935604 | None:intergenic |
TACGATCATTGCGTTCATCA+GGG | 0.570165 | 4.4:-47939052 | None:intergenic |
TCATTTCTGTCAGATAATCT+CGG | 0.570453 | 4.4:+47934647 | MS.gene78117:intron |
CATAATATTCATCATCACGC+TGG | 0.577554 | 4.4:-47939186 | None:intergenic |
ATAAATGTCCCACTCAAGGA+TGG | 0.577602 | 4.4:+47936657 | MS.gene78117:CDS |
TTTGTTCTTTCCTGGAACAG+GGG | 0.585802 | 4.4:+47936099 | MS.gene78117:CDS |
TTTGCACACTCGGAGCGTGT+TGG | 0.599987 | 4.4:-47938480 | None:intergenic |
TCAAATAAGTTGTCAAACAC+AGG | 0.600455 | 4.4:-47934680 | None:intergenic |
CTTCTTCTACACCATCTCCA+TGG | 0.601794 | 4.4:-47935634 | None:intergenic |
GATGGTGAGTCATGCAAAGA+CGG | 0.603120 | 4.4:-47933718 | None:intergenic |
CAGGAATGTAGAAGTCGGGC+GGG | 0.604133 | 4.4:-47939007 | None:intergenic |
GATATCAGGAATGTAGAAGT+CGG | 0.604837 | 4.4:-47939012 | None:intergenic |
ATAATCAGCGGAGTGAAACT+GGG | 0.607591 | 4.4:-47933939 | None:intergenic |
CATCAATTCCATCCTTGAGT+GGG | 0.614410 | 4.4:-47936665 | None:intergenic |
TCATCAATTCCATCCTTGAG+TGG | 0.615793 | 4.4:-47936666 | None:intergenic |
TCCGAGTGTGCAAATGCAAG+AGG | 0.618119 | 4.4:+47938489 | MS.gene78117:CDS |
ATTGCTATAAACTGGGCTGG+TGG | 0.619813 | 4.4:+47935491 | MS.gene78117:CDS |
GATATTGCTATAAACTGGGC+TGG | 0.621161 | 4.4:+47935488 | MS.gene78117:CDS |
TTTCTGCCACAGGTCACTGG+AGG | 0.624803 | 4.4:+47937159 | MS.gene78117:intron |
AGAATCTCTTACTTCTACGA+CGG | 0.632960 | 4.4:+47932302 | MS.gene78117:CDS |
ATAGATGTGCACCATGGAGA+TGG | 0.633899 | 4.4:+47935623 | MS.gene78117:CDS |
TCAGGAATGTAGAAGTCGGG+CGG | 0.639479 | 4.4:-47939008 | None:intergenic |
GATCATATGAGAGAACAAGA+TGG | 0.643478 | 4.4:-47933736 | None:intergenic |
GTGTGATATTGCTATAAACT+GGG | 0.645382 | 4.4:+47935484 | MS.gene78117:CDS |
TCAACCGATAATGCGCTCCA+AGG | 0.647032 | 4.4:+47932277 | None:intergenic |
CGTGATGATGAATATTATGA+CGG | 0.669888 | 4.4:+47939190 | MS.gene78117:CDS |
TGAGTCATGCAAAGACGGTG+AGG | 0.681310 | 4.4:-47933713 | None:intergenic |
ATTGATATAGATGTGCACCA+TGG | 0.683891 | 4.4:+47935617 | MS.gene78117:CDS |
TCAACAGGATAAGCTTTGTG+TGG | 0.695753 | 4.4:-47933911 | None:intergenic |
GTAGTTGAAACATATCAACC+TGG | 0.696673 | 4.4:+47936840 | MS.gene78117:CDS |
ATTGATGTAACAAAATCCAG+AGG | 0.700230 | 4.4:-47935540 | None:intergenic |
GGTGCCATAGTTCTACAGTG+TGG | 0.707660 | 4.4:+47936861 | MS.gene78117:CDS |
ATATCAATATATAAAACACG+GGG | 0.754993 | 4.4:-47935602 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 47932287 | 47939249 | 47932287 | ID=MS.gene78117 |
chr4.4 | mRNA | 47932287 | 47939249 | 47932287 | ID=MS.gene78117.t1;Parent=MS.gene78117 |
chr4.4 | exon | 47932287 | 47932323 | 47932287 | ID=MS.gene78117.t1.exon1;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47932287 | 47932323 | 47932287 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47933669 | 47933781 | 47933669 | ID=MS.gene78117.t1.exon2;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47933669 | 47933781 | 47933669 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47933908 | 47934025 | 47933908 | ID=MS.gene78117.t1.exon3;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47933908 | 47934025 | 47933908 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47934660 | 47934734 | 47934660 | ID=MS.gene78117.t1.exon4;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47934660 | 47934734 | 47934660 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47935456 | 47935675 | 47935456 | ID=MS.gene78117.t1.exon5;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47935456 | 47935675 | 47935456 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47936066 | 47936129 | 47936066 | ID=MS.gene78117.t1.exon6;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47936066 | 47936129 | 47936066 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47936624 | 47936716 | 47936624 | ID=MS.gene78117.t1.exon7;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47936624 | 47936716 | 47936624 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47936828 | 47936936 | 47936828 | ID=MS.gene78117.t1.exon8;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47936828 | 47936936 | 47936828 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47937041 | 47937090 | 47937041 | ID=MS.gene78117.t1.exon9;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47937041 | 47937090 | 47937041 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47937171 | 47937261 | 47937171 | ID=MS.gene78117.t1.exon10;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47937171 | 47937261 | 47937171 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47938119 | 47938189 | 47938119 | ID=MS.gene78117.t1.exon11;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47938119 | 47938189 | 47938119 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47938412 | 47938510 | 47938412 | ID=MS.gene78117.t1.exon12;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47938412 | 47938510 | 47938412 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47939005 | 47939071 | 47939005 | ID=MS.gene78117.t1.exon13;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47939005 | 47939071 | 47939005 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
chr4.4 | exon | 47939164 | 47939249 | 47939164 | ID=MS.gene78117.t1.exon14;Parent=MS.gene78117.t1 |
chr4.4 | CDS | 47939164 | 47939249 | 47939164 | ID=cds.MS.gene78117.t1;Parent=MS.gene78117.t1 |
Gene Sequence |
Protein sequence |