Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78130.t1 | XP_003606266.1 | 75.7 | 267 | 53 | 1 | 1 | 255 | 1 | 267 | 1.80E-71 | 279.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78130.t1 | Q8LJS2 | 43.3 | 291 | 121 | 3 | 5 | 251 | 1 | 291 | 6.5e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78130.t1 | G7JL03 | 75.7 | 267 | 53 | 1 | 1 | 255 | 1 | 267 | 1.3e-71 | 279.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049873 | MS.gene78130 | 0.802654 | 5.06E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene78130 | 0.815162 | 1.06E-51 | -1.69E-46 |
| MS.gene051791 | MS.gene78130 | 0.828748 | 7.57E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene78130 | 0.800566 | 1.36E-48 | -1.69E-46 |
| MS.gene055580 | MS.gene78130 | -0.815852 | 7.47E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene78130 | 0.80135 | 9.38E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene78130 | 0.80585 | 1.09E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene78130 | 0.810326 | 1.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78130.t1 | MTR_4g055440 | 88.015 | 267 | 20 | 1 | 1 | 255 | 1 | 267 | 4.11e-133 | 376 |
| MS.gene78130.t1 | MTR_2g084815 | 45.968 | 248 | 108 | 4 | 5 | 229 | 1 | 245 | 1.18e-51 | 170 |
| MS.gene78130.t1 | MTR_2g084815 | 52.518 | 139 | 47 | 2 | 5 | 143 | 1 | 120 | 5.04e-38 | 134 |
| MS.gene78130.t1 | MTR_2g084815 | 52.518 | 139 | 47 | 2 | 5 | 143 | 1 | 120 | 7.80e-38 | 134 |
| MS.gene78130.t1 | MTR_2g084815 | 60.748 | 107 | 41 | 1 | 5 | 111 | 1 | 106 | 1.57e-36 | 129 |
| MS.gene78130.t1 | MTR_4g055450 | 62.000 | 100 | 26 | 2 | 1 | 100 | 1 | 88 | 2.35e-33 | 124 |
| MS.gene78130.t1 | MTR_4g055450 | 70.330 | 91 | 27 | 0 | 165 | 255 | 270 | 360 | 1.47e-31 | 119 |
| MS.gene78130.t1 | MTR_4g074010 | 65.385 | 52 | 18 | 0 | 204 | 255 | 82 | 133 | 6.47e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78130.t1 | AT5G03740 | 48.454 | 97 | 47 | 2 | 5 | 101 | 1 | 94 | 4.25e-23 | 95.9 |
| MS.gene78130.t1 | AT3G44750 | 36.626 | 243 | 106 | 7 | 5 | 233 | 1 | 209 | 8.73e-21 | 88.6 |
| MS.gene78130.t1 | AT3G44750 | 36.585 | 246 | 105 | 8 | 5 | 233 | 1 | 212 | 1.48e-20 | 87.8 |
| MS.gene78130.t1 | AT5G22650 | 44.792 | 96 | 49 | 2 | 5 | 100 | 1 | 92 | 9.84e-19 | 84.0 |
| MS.gene78130.t1 | AT2G27840 | 34.351 | 131 | 78 | 5 | 5 | 131 | 1 | 127 | 3.14e-13 | 65.9 |
| MS.gene78130.t1 | AT2G27840 | 34.848 | 132 | 76 | 6 | 5 | 131 | 1 | 127 | 4.31e-13 | 66.6 |
Find 47 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTGAAGGCTGCAAATTC+TGG | 0.194784 | 4.4:-47643293 | MS.gene78130:CDS |
| GCTGATCTGAAGTTTGTTAT+AGG | 0.213108 | 4.4:-47644190 | MS.gene78130:CDS |
| TGGAACGACCAATGGAGTTT+TGG | 0.262143 | 4.4:-47644894 | MS.gene78130:CDS |
| TCAGACTCTGATTCTTCTTC+AGG | 0.263791 | 4.4:+47643257 | None:intergenic |
| CTCTGATTCTTCTTCAGGTT+CGG | 0.333729 | 4.4:+47643262 | None:intergenic |
| ATGGGACTCTGGTTCTTTGC+AGG | 0.347510 | 4.4:+47642035 | None:intergenic |
| AGAAGAGACTCCTGCTAAAA+AGG | 0.352924 | 4.4:-47642893 | MS.gene78130:intron |
| ATCAAAAGCTCAAGCTTTGA+AGG | 0.357438 | 4.4:-47643306 | MS.gene78130:intron |
| TTAGCTTTCTTGGTAGGAAC+GGG | 0.397776 | 4.4:+47642713 | None:intergenic |
| CCACCCTTCTTCATAGGGTG+GGG | 0.414172 | 4.4:+47642074 | None:intergenic |
| AGGCCTGCTACCACCAAATC+TGG | 0.414273 | 4.4:-47641902 | MS.gene78130:CDS |
| TGACCAGATTTGGTGGTAGC+AGG | 0.419024 | 4.4:+47641899 | None:intergenic |
| TCCACCCTTCTTCATAGGGT+GGG | 0.423820 | 4.4:+47642073 | None:intergenic |
| AAAACATACTTCTTAGAAAT+GGG | 0.425126 | 4.4:+47642017 | None:intergenic |
| TTTCTGGATTCAAAATTGTC+TGG | 0.429772 | 4.4:-47644069 | MS.gene78130:intron |
| GATGATGACTCTGACAGTTC+TGG | 0.436644 | 4.4:-47643549 | MS.gene78130:intron |
| TATCCCGTACATTCATCATC+TGG | 0.443307 | 4.4:+47644377 | None:intergenic |
| ACTTTCAAATACAGAACAAC+AGG | 0.463446 | 4.4:+47644214 | None:intergenic |
| GATTCTTCTTCAGGTTCGGC+AGG | 0.470117 | 4.4:+47643266 | None:intergenic |
| CCCGTCTAGAACGATATTCA+AGG | 0.477788 | 4.4:+47644135 | None:intergenic |
| AACTCCCCACCCTATGAAGA+AGG | 0.490850 | 4.4:-47642078 | MS.gene78130:CDS |
| TTCCACCCTTCTTCATAGGG+TGG | 0.491279 | 4.4:+47642072 | None:intergenic |
| CTTTAGGTTGCACTCGGGGA+AGG | 0.500046 | 4.4:-47644259 | MS.gene78130:intron |
| TTAGGTGTCGAGGTTAAGGC+TGG | 0.509954 | 4.4:-47644419 | MS.gene78130:intron |
| TGATCCAGATGATGAATGTA+CGG | 0.512625 | 4.4:-47644381 | MS.gene78130:CDS |
| TGTTATCTTTAGGTTGCACT+CGG | 0.512638 | 4.4:-47644265 | MS.gene78130:intron |
| TTTAGGTTGCACTCGGGGAA+GGG | 0.515624 | 4.4:-47644258 | MS.gene78130:intron |
| CCTTGAATATCGTTCTAGAC+GGG | 0.516260 | 4.4:-47644135 | MS.gene78130:CDS |
| CGAGGTTAAGGCTGGACAAT+CGG | 0.524968 | 4.4:-47644411 | MS.gene78130:CDS |
| TTTAGCTTTCTTGGTAGGAA+CGG | 0.527052 | 4.4:+47642712 | None:intergenic |
| CTTTCAAATGGAACGACCAA+TGG | 0.531330 | 4.4:-47644902 | None:intergenic |
| TGAACTTTCTCACAATTCAA+AGG | 0.534774 | 4.4:-47644107 | MS.gene78130:CDS |
| TGTTATAGGAACTCTCACTA+AGG | 0.535682 | 4.4:-47644176 | MS.gene78130:CDS |
| TCTTCTTCACTCTCACTAGC+AGG | 0.540100 | 4.4:+47642910 | None:intergenic |
| ACCTTGAATATCGTTCTAGA+CGG | 0.542911 | 4.4:-47644136 | MS.gene78130:CDS |
| TGGTTCTTTGCAGGACTCTG+AGG | 0.553469 | 4.4:+47642044 | None:intergenic |
| AATGCTACTCCTGAAAAGAC+TGG | 0.563878 | 4.4:-47642689 | MS.gene78130:intron |
| ACTTCTTAGAAATGGGACTC+TGG | 0.566951 | 4.4:+47642024 | None:intergenic |
| GTTATCTTTAGGTTGCACTC+GGG | 0.569880 | 4.4:-47644264 | MS.gene78130:intron |
| GATCCAGATGATGAATGTAC+GGG | 0.574494 | 4.4:-47644380 | MS.gene78130:CDS |
| TGATATTTCACTCGATGAAG+AGG | 0.594288 | 4.4:-47643222 | MS.gene78130:intron |
| CCCCACCCTATGAAGAAGGG+TGG | 0.617916 | 4.4:-47642074 | MS.gene78130:CDS |
| TTATCTTTAGGTTGCACTCG+GGG | 0.622300 | 4.4:-47644263 | MS.gene78130:intron |
| ATTCAAGGTAGTCTGAGGAA+AGG | 0.624002 | 4.4:+47644150 | None:intergenic |
| ACGATATTCAAGGTAGTCTG+AGG | 0.625009 | 4.4:+47644145 | None:intergenic |
| ACTCCCCACCCTATGAAGAA+GGG | 0.639409 | 4.4:-47642077 | MS.gene78130:CDS |
| CTTGAATATCGTTCTAGACG+GGG | 0.652881 | 4.4:-47644134 | MS.gene78130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAGAAAAAAAACAT+TGG | + | chr4.4:47644461-47644480 | None:intergenic | 10.0% |
| !!! | ATTTTATTTGTTAATATTGA+TGG | - | chr4.4:47643078-47643097 | MS.gene78130:intron | 10.0% |
| !! | AAATAACCAAACTTTATTAA+CGG | - | chr4.4:47642984-47643003 | MS.gene78130:intron | 15.0% |
| !! | GTAAATTAAAAATTTCTACA+TGG | + | chr4.4:47642252-47642271 | None:intergenic | 15.0% |
| !! | TTAAAAATGTTATATTGTTC+TGG | - | chr4.4:47643252-47643271 | MS.gene78130:CDS | 15.0% |
| !! | TTATGATAAATTCTTTCATT+TGG | - | chr4.4:47643783-47643802 | MS.gene78130:intron | 15.0% |
| !!! | TTATTATACTTGTTATCTTT+AGG | - | chr4.4:47642485-47642504 | MS.gene78130:intron | 15.0% |
| !! | AAAAACATACTTCTTAGAAA+TGG | + | chr4.4:47644747-47644766 | None:intergenic | 20.0% |
| !! | AAAACATACTTCTTAGAAAT+GGG | + | chr4.4:47644746-47644765 | None:intergenic | 20.0% |
| !! | AATGATAATAATACCGTAAT+GGG | + | chr4.4:47642449-47642468 | None:intergenic | 20.0% |
| !! | AATTAAATTTGTGTTGTAGA+TGG | - | chr4.4:47644638-47644657 | MS.gene78130:intron | 20.0% |
| !! | ACAAATAAAATGAATACAAC+AGG | + | chr4.4:47643069-47643088 | None:intergenic | 20.0% |
| !! | AGATAAATGATAAATTTGTG+AGG | + | chr4.4:47643143-47643162 | None:intergenic | 20.0% |
| !! | AGCATTAAAAAATCACAATT+AGG | + | chr4.4:47644832-47644851 | None:intergenic | 20.0% |
| !! | ATAAAATAAAAACTACTGCA+AGG | + | chr4.4:47642217-47642236 | None:intergenic | 20.0% |
| !! | TAATGATAATAATACCGTAA+TGG | + | chr4.4:47642450-47642469 | None:intergenic | 20.0% |
| !! | TGCTTTGTATTATACAATTA+GGG | - | chr4.4:47644112-47644131 | MS.gene78130:CDS | 20.0% |
| !!! | AATGTGATCTTATTTAACAT+TGG | - | chr4.4:47642310-47642329 | MS.gene78130:intron | 20.0% |
| !!! | AGAAATTGATTTTTTCTTGT+TGG | - | chr4.4:47643735-47643754 | MS.gene78130:intron | 20.0% |
| !!! | ATAAAGTTTGGTTATTTTGA+CGG | + | chr4.4:47642981-47643000 | None:intergenic | 20.0% |
| !!! | CTTTATATTAGAGAATGTTT+TGG | - | chr4.4:47642758-47642777 | MS.gene78130:CDS | 20.0% |
| !!! | TTAACATTGGTTTGAATTTT+AGG | - | chr4.4:47642323-47642342 | MS.gene78130:intron | 20.0% |
| !!! | TTATTTCACTTTGTGTTATT+TGG | - | chr4.4:47643295-47643314 | MS.gene78130:CDS | 20.0% |
| ! | AAGAACAAAAAGAGAACAAA+TGG | - | chr4.4:47644008-47644027 | MS.gene78130:intron | 25.0% |
| ! | AATCAGATCTGAGAAAAAAA+TGG | - | chr4.4:47642037-47642056 | MS.gene78130:CDS | 25.0% |
| ! | ACTCAACAAAATTATTCAGA+AGG | + | chr4.4:47644799-47644818 | None:intergenic | 25.0% |
| ! | AGAACAAAAAGAGAACAAAT+GGG | - | chr4.4:47644009-47644028 | MS.gene78130:intron | 25.0% |
| ! | AGAGTTTATTTGATTCTTCT+TGG | - | chr4.4:47643688-47643707 | MS.gene78130:intron | 25.0% |
| ! | ATGATAATAATACCGTAATG+GGG | + | chr4.4:47642448-47642467 | None:intergenic | 25.0% |
| ! | CTGCTTTGTATTATACAATT+AGG | - | chr4.4:47644111-47644130 | MS.gene78130:CDS | 25.0% |
| ! | GCAACAAAAGATTAAACATA+AGG | - | chr4.4:47644196-47644215 | MS.gene78130:CDS | 25.0% |
| ! | TTTATCATTCAAACAGAGAA+TGG | + | chr4.4:47644549-47644568 | None:intergenic | 25.0% |
| !! | ACAAAAGTATATAACCAATC+AGG | + | chr4.4:47642730-47642749 | None:intergenic | 25.0% |
| !! | CAATTTTGAATCCAGAAAAA+TGG | + | chr4.4:47642689-47642708 | None:intergenic | 25.0% |
| !! | CTTTGTTATCAATTCCAATT+CGG | + | chr4.4:47642930-47642949 | None:intergenic | 25.0% |
| !! | TATTTCCTTTTAGCATACAA+TGG | + | chr4.4:47643653-47643672 | None:intergenic | 25.0% |
| !! | TTATATTGTTCTGGTTAAGT+TGG | - | chr4.4:47643261-47643280 | MS.gene78130:CDS | 25.0% |
| !! | TTGGAATTGATAACAAAGTT+TGG | - | chr4.4:47642932-47642951 | MS.gene78130:CDS | 25.0% |
| !!! | CAATGTTTTAAAAACCGAAT+TGG | - | chr4.4:47642913-47642932 | MS.gene78130:CDS | 25.0% |
| !!! | CAATTCGGTTTTTAAAACAT+TGG | + | chr4.4:47642915-47642934 | None:intergenic | 25.0% |
| !!! | GATTTTTTAATGCTATTTCC+AGG | - | chr4.4:47644838-47644857 | MS.gene78130:intron | 25.0% |
| !!! | TACATGGTTTAATGTTTTGA+AGG | - | chr4.4:47643974-47643993 | MS.gene78130:intron | 25.0% |
| !!! | TGTAATTTGTTCTTTATGTG+TGG | - | chr4.4:47643595-47643614 | MS.gene78130:intron | 25.0% |
| !!! | TTTATGTTATTTCCCCATTA+CGG | - | chr4.4:47642433-47642452 | MS.gene78130:intron | 25.0% |
| !!! | TTTATTTTGTTGACCAGATT+TGG | + | chr4.4:47644874-47644893 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTGTTGGTATAAG+TGG | - | chr4.4:47643744-47643763 | MS.gene78130:intron | 25.0% |
| AAATTTGAACCATGACACAA+AGG | + | chr4.4:47642837-47642856 | None:intergenic | 30.0% | |
| AAGATATGATCACTGCATAA+TGG | + | chr4.4:47644618-47644637 | None:intergenic | 30.0% | |
| ACTTTCAAATACAGAACAAC+AGG | + | chr4.4:47642549-47642568 | None:intergenic | 30.0% | |
| ATAAGCTAAAAAATGCCTAC+AGG | - | chr4.4:47644254-47644273 | MS.gene78130:CDS | 30.0% | |
| GAACAAAAAGAGAACAAATG+GGG | - | chr4.4:47644010-47644029 | MS.gene78130:intron | 30.0% | |
| GCACTTAATCAATTAGAGTT+TGG | - | chr4.4:47644158-47644177 | MS.gene78130:CDS | 30.0% | |
| GTACGATAATTTAGTGATTG+AGG | + | chr4.4:47642008-47642027 | None:intergenic | 30.0% | |
| GTTTAGTGCGTGTATATAAA+TGG | - | chr4.4:47642174-47642193 | MS.gene78130:intron | 30.0% | |
| TCAATCCATTGTATGCTAAA+AGG | - | chr4.4:47643645-47643664 | MS.gene78130:intron | 30.0% | |
| TGAACTTTCTCACAATTCAA+AGG | - | chr4.4:47642653-47642672 | MS.gene78130:intron | 30.0% | |
| TGATTCTTCTTGGTAAACAT+TGG | - | chr4.4:47643698-47643717 | MS.gene78130:intron | 30.0% | |
| TGTGTTGTAGATGGTAAAAA+AGG | - | chr4.4:47644647-47644666 | MS.gene78130:intron | 30.0% | |
| TTTCTGGATTCAAAATTGTC+TGG | - | chr4.4:47642691-47642710 | MS.gene78130:CDS | 30.0% | |
| ! | AATCAGAGTCTGATTTTTCT+GGG | - | chr4.4:47643513-47643532 | MS.gene78130:intron | 30.0% |
| ! | AGAGGTATATTAGTAACTTC+AGG | - | chr4.4:47643556-47643575 | MS.gene78130:CDS | 30.0% |
| ! | ATAACATTACCAGTCTTTTC+AGG | + | chr4.4:47644083-47644102 | None:intergenic | 30.0% |
| ! | ATCTAAAACAGAAAACTGTG+AGG | + | chr4.4:47644387-47644406 | None:intergenic | 30.0% |
| ! | CAACTAGGTTTTCAAAACAT+CGG | + | chr4.4:47642801-47642820 | None:intergenic | 30.0% |
| ! | CTATGATAGGTTTTTATACC+GGG | - | chr4.4:47642070-47642089 | MS.gene78130:CDS | 30.0% |
| ! | GCTATGATAGGTTTTTATAC+CGG | - | chr4.4:47642069-47642088 | MS.gene78130:CDS | 30.0% |
| ! | TTCTAAAAATAAGCACCTGT+AGG | + | chr4.4:47644272-47644291 | None:intergenic | 30.0% |
| !! | TGCATAATGGATCTTTAAAC+AGG | + | chr4.4:47644605-47644624 | None:intergenic | 30.0% |
| !! | TGGTCTTTATTTGCTATGAT+AGG | - | chr4.4:47642057-47642076 | MS.gene78130:CDS | 30.0% |
| !!! | AGTAGCATTTTTAGCTTTCT+TGG | + | chr4.4:47644060-47644079 | None:intergenic | 30.0% |
| !!! | ATGGTTTAATGTTTTGAAGG+TGG | - | chr4.4:47643977-47643996 | MS.gene78130:intron | 30.0% |
| !!! | TGGTAAACATTGGTTTTATC+TGG | - | chr4.4:47643708-47643727 | MS.gene78130:intron | 30.0% |
| AACCAAACTTTATTAACGGC+TGG | - | chr4.4:47642988-47643007 | MS.gene78130:intron | 35.0% | |
| AACCAGCCGTTAATAAAGTT+TGG | + | chr4.4:47642993-47643012 | None:intergenic | 35.0% | |
| ACTACACTGGTACTTATACA+TGG | - | chr4.4:47643958-47643977 | MS.gene78130:intron | 35.0% | |
| ACTGGCTGAATTATTTGGTT+CGG | - | chr4.4:47643022-47643041 | MS.gene78130:intron | 35.0% | |
| AGTGCGTGTATATAAATGGT+GGG | - | chr4.4:47642178-47642197 | MS.gene78130:intron | 35.0% | |
| ATACAATTAGGGTCGTGAAT+GGG | - | chr4.4:47644123-47644142 | MS.gene78130:CDS | 35.0% | |
| CTCAGATCTGATTGCTTAAT+TGG | + | chr4.4:47642030-47642049 | None:intergenic | 35.0% | |
| CTTACAAAAACCCGTATGTA+AGG | - | chr4.4:47642094-47642113 | MS.gene78130:CDS | 35.0% | |
| CTTCTCTTGCAAAATGTGTT+TGG | - | chr4.4:47642876-47642895 | MS.gene78130:intron | 35.0% | |
| GATATGAAGAGAAAATGCAG+TGG | + | chr4.4:47641972-47641991 | None:intergenic | 35.0% | |
| GCAGTGGTTAAAAGTGAAAT+TGG | + | chr4.4:47641956-47641975 | None:intergenic | 35.0% | |
| GTTCAACTGGCTGAATTATT+TGG | - | chr4.4:47643017-47643036 | MS.gene78130:intron | 35.0% | |
| TACGAATCCATGTATCATGA+AGG | + | chr4.4:47644493-47644512 | None:intergenic | 35.0% | |
| TAGTGCGTGTATATAAATGG+TGG | - | chr4.4:47642177-47642196 | MS.gene78130:intron | 35.0% | |
| TATACAATTAGGGTCGTGAA+TGG | - | chr4.4:47644122-47644141 | MS.gene78130:CDS | 35.0% | |
| TGAGGCATGTTACACATATT+AGG | + | chr4.4:47643125-47643144 | None:intergenic | 35.0% | |
| TGATATTTCACTCGATGAAG+AGG | - | chr4.4:47643538-47643557 | MS.gene78130:intron | 35.0% | |
| TGATCCAGATGATGAATGTA+CGG | - | chr4.4:47642379-47642398 | MS.gene78130:intron | 35.0% | |
| TGATTGAGGAGAGAAAAACA+GGG | + | chr4.4:47641994-47642013 | None:intergenic | 35.0% | |
| TGTTATAGGAACTCTCACTA+AGG | - | chr4.4:47642584-47642603 | MS.gene78130:intron | 35.0% | |
| TTAAGAGACAGTATCTACCA+CGG | + | chr4.4:47643356-47643375 | None:intergenic | 35.0% | |
| ! | ACCTTGAATATCGTTCTAGA+CGG | - | chr4.4:47642624-47642643 | MS.gene78130:intron | 35.0% |
| ! | ATCAAAAGCTCAAGCTTTGA+AGG | - | chr4.4:47643454-47643473 | MS.gene78130:intron | 35.0% |
| ! | ATTTTACCCCAAAACTCCAT+TGG | + | chr4.4:47641877-47641896 | None:intergenic | 35.0% |
| ! | ATTTTGTTGACCAGATTTGG+TGG | + | chr4.4:47644871-47644890 | None:intergenic | 35.0% |
| ! | CTTTATTAACGGCTGGTTAA+AGG | - | chr4.4:47642995-47643014 | MS.gene78130:intron | 35.0% |
| ! | GAATCAGAGTCTGATTTTTC+TGG | - | chr4.4:47643512-47643531 | MS.gene78130:intron | 35.0% |
| ! | TTTTGTGCCTTCATGATACA+TGG | - | chr4.4:47644483-47644502 | MS.gene78130:intron | 35.0% |
| ! | TTTTTCCACCCTTCTTCATA+GGG | + | chr4.4:47644694-47644713 | None:intergenic | 35.0% |
| !! | AGTTGAGTTGAGAAGTGTAT+TGG | + | chr4.4:47642142-47642161 | None:intergenic | 35.0% |
| !! | CAGTTGATTACCTTTTTAGC+AGG | + | chr4.4:47643880-47643899 | None:intergenic | 35.0% |
| !! | GCTGATCTGAAGTTTGTTAT+AGG | - | chr4.4:47642570-47642589 | MS.gene78130:intron | 35.0% |
| !! | TGTTATCTTTAGGTTGCACT+CGG | - | chr4.4:47642495-47642514 | MS.gene78130:intron | 35.0% |
| !! | TTTAGCTTTCTTGGTAGGAA+CGG | + | chr4.4:47644051-47644070 | None:intergenic | 35.0% |
| !!! | AATGTTTTGAAGGTGGATGA+GGG | - | chr4.4:47643984-47644003 | MS.gene78130:intron | 35.0% |
| !!! | AATTTTAGGTGTCGAGGTTA+AGG | - | chr4.4:47642337-47642356 | MS.gene78130:intron | 35.0% |
| !!! | CGATGTTTTGAAAACCTAGT+TGG | - | chr4.4:47642799-47642818 | MS.gene78130:intron | 35.0% |
| !!! | GCATTTTTAGCTTTCTTGGT+AGG | + | chr4.4:47644056-47644075 | None:intergenic | 35.0% |
| !!! | TAATGTTTTGAAGGTGGATG+AGG | - | chr4.4:47643983-47644002 | MS.gene78130:intron | 35.0% |
| !!! | TGGTTCGGTTTTTAACACAT+TGG | - | chr4.4:47643037-47643056 | MS.gene78130:intron | 35.0% |
| AAAAAGAGAACAAATGGGGC+TGG | - | chr4.4:47644014-47644033 | MS.gene78130:intron | 40.0% | |
| AAATTCGTACGTGTTCCTTG+TGG | - | chr4.4:47643175-47643194 | MS.gene78130:intron | 40.0% | |
| AATGCTACTCCTGAAAAGAC+TGG | - | chr4.4:47644071-47644090 | MS.gene78130:CDS | 40.0% | |
| ACACTCATCACCTTACATAC+GGG | + | chr4.4:47642107-47642126 | None:intergenic | 40.0% | |
| ACGATATTCAAGGTAGTCTG+AGG | + | chr4.4:47642618-47642637 | None:intergenic | 40.0% | |
| ACTTCTTAGAAATGGGACTC+TGG | + | chr4.4:47644739-47644758 | None:intergenic | 40.0% | |
| AGAAGAGACTCCTGCTAAAA+AGG | - | chr4.4:47643867-47643886 | MS.gene78130:intron | 40.0% | |
| ATGTAAGGTGATGAGTGTGA+TGG | - | chr4.4:47642109-47642128 | MS.gene78130:intron | 40.0% | |
| ATTCAAGGTAGTCTGAGGAA+AGG | + | chr4.4:47642613-47642632 | None:intergenic | 40.0% | |
| CAAATGAGACCTTTGTGTCA+TGG | - | chr4.4:47642825-47642844 | MS.gene78130:intron | 40.0% | |
| CAACTCAACTCAACAGTACT+GGG | - | chr4.4:47642152-47642171 | MS.gene78130:intron | 40.0% | |
| CACACTCATCACCTTACATA+CGG | + | chr4.4:47642108-47642127 | None:intergenic | 40.0% | |
| CTCATTTGCAATAGCTTCAC+TGG | + | chr4.4:47644354-47644373 | None:intergenic | 40.0% | |
| GATCCAGATGATGAATGTAC+GGG | - | chr4.4:47642380-47642399 | MS.gene78130:intron | 40.0% | |
| GGTCTCATTTGTTTCCAACT+AGG | + | chr4.4:47642816-47642835 | None:intergenic | 40.0% | |
| GTATCTTTCACACTCCTGAT+TGG | - | chr4.4:47642713-47642732 | MS.gene78130:CDS | 40.0% | |
| GTATTCTGCACAAACTACAC+TGG | - | chr4.4:47643945-47643964 | MS.gene78130:intron | 40.0% | |
| GTGATTGAGGAGAGAAAAAC+AGG | + | chr4.4:47641995-47642014 | None:intergenic | 40.0% | |
| TATCCCGTACATTCATCATC+TGG | + | chr4.4:47642386-47642405 | None:intergenic | 40.0% | |
| TCAACTCAACTCAACAGTAC+TGG | - | chr4.4:47642151-47642170 | MS.gene78130:intron | 40.0% | |
| TCAGACTCTGATTCTTCTTC+AGG | + | chr4.4:47643506-47643525 | None:intergenic | 40.0% | |
| TGTAAGGTGATGAGTGTGAT+GGG | - | chr4.4:47642110-47642129 | MS.gene78130:intron | 40.0% | |
| ! | ATACGGGTTTTTGTAAGACC+CGG | + | chr4.4:47642091-47642110 | None:intergenic | 40.0% |
| ! | CCTTGAATATCGTTCTAGAC+GGG | - | chr4.4:47642625-47642644 | MS.gene78130:intron | 40.0% |
| ! | CGGTTTTTAACACATTGGTC+TGG | - | chr4.4:47643042-47643061 | MS.gene78130:intron | 40.0% |
| ! | CTCTGATTCTTCTTCAGGTT+CGG | + | chr4.4:47643501-47643520 | None:intergenic | 40.0% |
| ! | CTTGAATATCGTTCTAGACG+GGG | - | chr4.4:47642626-47642645 | MS.gene78130:intron | 40.0% |
| ! | GTTTTTCCACCCTTCTTCAT+AGG | + | chr4.4:47644695-47644714 | None:intergenic | 40.0% |
| ! | TTAGCTTTCTTGGTAGGAAC+GGG | + | chr4.4:47644050-47644069 | None:intergenic | 40.0% |
| !! | CGTGTATATAAATGGTGGGT+GGG | - | chr4.4:47642182-47642201 | MS.gene78130:intron | 40.0% |
| !! | GGTTTGAATTTTAGGTGTCG+AGG | - | chr4.4:47642331-47642350 | MS.gene78130:intron | 40.0% |
| !! | GTTATCTTTAGGTTGCACTC+GGG | - | chr4.4:47642496-47642515 | MS.gene78130:intron | 40.0% |
| !! | TTATCTTTAGGTTGCACTCG+GGG | - | chr4.4:47642497-47642516 | MS.gene78130:intron | 40.0% |
| !!! | CAAGTCTGTTTTTACATGCG+TGG | - | chr4.4:47644418-47644437 | MS.gene78130:CDS | 40.0% |
| !!! | GGCATTTTAGAGTGATACTG+AGG | - | chr4.4:47643804-47643823 | MS.gene78130:intron | 40.0% |
| !!! | TCTGTTTTTACATGCGTGGT+TGG | - | chr4.4:47644422-47644441 | MS.gene78130:intron | 40.0% |
| GATGATGACTCTGACAGTTC+TGG | - | chr4.4:47643211-47643230 | MS.gene78130:intron | 45.0% | |
| GTGACAGTGACATAAGCACT+TGG | + | chr4.4:47644309-47644328 | None:intergenic | 45.0% | |
| TATCTACCACGGTCCATCAA+AGG | + | chr4.4:47643345-47643364 | None:intergenic | 45.0% | |
| TCCATCAAAGGAGCAAGTTC+AGG | + | chr4.4:47643333-47643352 | None:intergenic | 45.0% | |
| TCTTCTTCACTCTCACTAGC+AGG | + | chr4.4:47643853-47643872 | None:intergenic | 45.0% | |
| ! | ACCTGAACTTGCTCCTTTGA+TGG | - | chr4.4:47643329-47643348 | MS.gene78130:intron | 45.0% |
| ! | CCCGTCTAGAACGATATTCA+AGG | + | chr4.4:47642628-47642647 | None:intergenic | 45.0% |
| ! | GAACGACCAATGGAGTTTTG+GGG | - | chr4.4:47641868-47641887 | MS.gene78130:CDS | 45.0% |
| ! | GCGTGTATATAAATGGTGGG+TGG | - | chr4.4:47642181-47642200 | MS.gene78130:intron | 45.0% |
| ! | GGAACGACCAATGGAGTTTT+GGG | - | chr4.4:47641867-47641886 | MS.gene78130:CDS | 45.0% |
| ! | TGGAACGACCAATGGAGTTT+TGG | - | chr4.4:47641866-47641885 | MS.gene78130:CDS | 45.0% |
| !! | GACGCAAGTGTCCATTTTTC+TGG | - | chr4.4:47642675-47642694 | MS.gene78130:intron | 45.0% |
| !! | GCTTTGAAGGCTGCAAATTC+TGG | - | chr4.4:47643467-47643486 | MS.gene78130:intron | 45.0% |
| AACTCCCCACCCTATGAAGA+AGG | - | chr4.4:47644682-47644701 | MS.gene78130:intron | 50.0% | |
| ACTCCCCACCCTATGAAGAA+GGG | - | chr4.4:47644683-47644702 | MS.gene78130:intron | 50.0% | |
| CGAGGTTAAGGCTGGACAAT+CGG | - | chr4.4:47642349-47642368 | MS.gene78130:intron | 50.0% | |
| TCCACCCTTCTTCATAGGGT+GGG | + | chr4.4:47644690-47644709 | None:intergenic | 50.0% | |
| TGGTTCTTTGCAGGACTCTG+AGG | + | chr4.4:47644719-47644738 | None:intergenic | 50.0% | |
| TTCCACCCTTCTTCATAGGG+TGG | + | chr4.4:47644691-47644710 | None:intergenic | 50.0% | |
| ! | CGGCTGGTTAAAGGTTCAAC+TGG | - | chr4.4:47643004-47643023 | MS.gene78130:intron | 50.0% |
| ! | GATTCTTCTTCAGGTTCGGC+AGG | + | chr4.4:47643497-47643516 | None:intergenic | 50.0% |
| !! | ATGGGACTCTGGTTCTTTGC+AGG | + | chr4.4:47644728-47644747 | None:intergenic | 50.0% |
| !! | TGACCAGATTTGGTGGTAGC+AGG | + | chr4.4:47644864-47644883 | None:intergenic | 50.0% |
| !! | TTAGGTGTCGAGGTTAAGGC+TGG | - | chr4.4:47642341-47642360 | MS.gene78130:intron | 50.0% |
| !! | TTTAGGTTGCACTCGGGGAA+GGG | - | chr4.4:47642502-47642521 | MS.gene78130:intron | 50.0% |
| AGGCCTGCTACCACCAAATC+TGG | - | chr4.4:47644858-47644877 | MS.gene78130:intron | 55.0% | |
| CCACCCTTCTTCATAGGGTG+GGG | + | chr4.4:47644689-47644708 | None:intergenic | 55.0% | |
| GTACGTGTTCCTTGTGGCAG+CGG | - | chr4.4:47643181-47643200 | MS.gene78130:intron | 55.0% | |
| ! | CTTGCTCCTTTGATGGACCG+TGG | - | chr4.4:47643336-47643355 | MS.gene78130:intron | 55.0% |
| !! | AGATTTGGTGGTAGCAGGCC+TGG | + | chr4.4:47644859-47644878 | None:intergenic | 55.0% |
| !! | CTTTAGGTTGCACTCGGGGA+AGG | - | chr4.4:47642501-47642520 | MS.gene78130:intron | 55.0% |
| CCCCACCCTATGAAGAAGGG+TGG | - | chr4.4:47644686-47644705 | MS.gene78130:intron | 60.0% | |
| TCATCACCACCGCTGCCACA+AGG | + | chr4.4:47643193-47643212 | None:intergenic | 60.0% | |
| CGTGTTCCTTGTGGCAGCGG+TGG | - | chr4.4:47643184-47643203 | MS.gene78130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 47641865 | 47644917 | 47641865 | ID=MS.gene78130 |
| chr4.4 | mRNA | 47641865 | 47644917 | 47641865 | ID=MS.gene78130.t1;Parent=MS.gene78130 |
| chr4.4 | exon | 47644893 | 47644917 | 47644893 | ID=MS.gene78130.t1.exon1;Parent=MS.gene78130.t1 |
| chr4.4 | CDS | 47644893 | 47644917 | 47644893 | ID=cds.MS.gene78130.t1;Parent=MS.gene78130.t1 |
| chr4.4 | exon | 47644361 | 47644437 | 47644361 | ID=MS.gene78130.t1.exon2;Parent=MS.gene78130.t1 |
| chr4.4 | CDS | 47644361 | 47644437 | 47644361 | ID=cds.MS.gene78130.t1;Parent=MS.gene78130.t1 |
| chr4.4 | exon | 47644070 | 47644275 | 47644070 | ID=MS.gene78130.t1.exon3;Parent=MS.gene78130.t1 |
| chr4.4 | CDS | 47644070 | 47644275 | 47644070 | ID=cds.MS.gene78130.t1;Parent=MS.gene78130.t1 |
| chr4.4 | exon | 47643550 | 47643581 | 47643550 | ID=MS.gene78130.t1.exon4;Parent=MS.gene78130.t1 |
| chr4.4 | CDS | 47643550 | 47643581 | 47643550 | ID=cds.MS.gene78130.t1;Parent=MS.gene78130.t1 |
| chr4.4 | exon | 47643223 | 47643320 | 47643223 | ID=MS.gene78130.t1.exon5;Parent=MS.gene78130.t1 |
| chr4.4 | CDS | 47643223 | 47643320 | 47643223 | ID=cds.MS.gene78130.t1;Parent=MS.gene78130.t1 |
| chr4.4 | exon | 47642894 | 47642968 | 47642894 | ID=MS.gene78130.t1.exon6;Parent=MS.gene78130.t1 |
| chr4.4 | CDS | 47642894 | 47642968 | 47642894 | ID=cds.MS.gene78130.t1;Parent=MS.gene78130.t1 |
| chr4.4 | exon | 47642690 | 47642786 | 47642690 | ID=MS.gene78130.t1.exon7;Parent=MS.gene78130.t1 |
| chr4.4 | CDS | 47642690 | 47642786 | 47642690 | ID=cds.MS.gene78130.t1;Parent=MS.gene78130.t1 |
| chr4.4 | exon | 47642026 | 47642125 | 47642026 | ID=MS.gene78130.t1.exon8;Parent=MS.gene78130.t1 |
| chr4.4 | CDS | 47642026 | 47642125 | 47642026 | ID=cds.MS.gene78130.t1;Parent=MS.gene78130.t1 |
| chr4.4 | exon | 47641865 | 47641922 | 47641865 | ID=MS.gene78130.t1.exon9;Parent=MS.gene78130.t1 |
| chr4.4 | CDS | 47641865 | 47641922 | 47641865 | ID=cds.MS.gene78130.t1;Parent=MS.gene78130.t1 |
| Gene Sequence |
| Protein sequence |
