Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78707.t1 | XP_003602950.1 | 93.6 | 362 | 23 | 0 | 1 | 362 | 1 | 362 | 5.60E-175 | 623.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78707.t1 | Q6YXH8 | 51.3 | 279 | 115 | 6 | 58 | 328 | 60 | 325 | 2.2e-66 | 254.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78707.t1 | G7J576 | 93.6 | 362 | 23 | 0 | 1 | 362 | 1 | 362 | 4.1e-175 | 623.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35752 | MS.gene78707 | PPI |
| MS.gene31553 | MS.gene78707 | PPI |
| MS.gene78707 | MS.gene065674 | PPI |
| MS.gene92988 | MS.gene78707 | PPI |
| MS.gene029005 | MS.gene78707 | PPI |
| MS.gene71698 | MS.gene78707 | PPI |
| MS.gene029573 | MS.gene78707 | PPI |
| MS.gene043340 | MS.gene78707 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78707.t1 | MTR_3g100710 | 94.751 | 362 | 19 | 0 | 1 | 362 | 1 | 362 | 0.0 | 641 |
| MS.gene78707.t1 | MTR_3g100710 | 87.017 | 362 | 18 | 1 | 1 | 362 | 1 | 333 | 0.0 | 563 |
| MS.gene78707.t1 | MTR_4g080990 | 75.549 | 364 | 65 | 5 | 1 | 362 | 1 | 342 | 0.0 | 524 |
| MS.gene78707.t1 | MTR_5g032550 | 51.111 | 360 | 148 | 11 | 1 | 354 | 1 | 338 | 6.31e-104 | 310 |
| MS.gene78707.t1 | MTR_5g065830 | 48.305 | 354 | 167 | 8 | 3 | 352 | 4 | 345 | 8.38e-102 | 305 |
| MS.gene78707.t1 | MTR_5g032550 | 54.264 | 258 | 102 | 5 | 1 | 253 | 1 | 247 | 2.89e-82 | 252 |
| MS.gene78707.t1 | MTR_8g068950 | 40.850 | 306 | 157 | 6 | 65 | 352 | 62 | 361 | 1.15e-63 | 207 |
| MS.gene78707.t1 | MTR_8g063120 | 42.241 | 232 | 131 | 2 | 62 | 291 | 59 | 289 | 2.02e-53 | 180 |
| MS.gene78707.t1 | MTR_8g063120 | 47.027 | 185 | 97 | 1 | 62 | 246 | 59 | 242 | 9.98e-53 | 176 |
| MS.gene78707.t1 | MTR_1g107535 | 36.364 | 297 | 174 | 7 | 62 | 352 | 72 | 359 | 1.04e-50 | 174 |
| MS.gene78707.t1 | MTR_5g035360 | 37.024 | 289 | 156 | 4 | 9 | 295 | 12 | 276 | 2.35e-50 | 171 |
| MS.gene78707.t1 | MTR_4g094942 | 37.786 | 262 | 154 | 4 | 95 | 352 | 80 | 336 | 2.05e-49 | 170 |
| MS.gene78707.t1 | MTR_3g102310 | 37.165 | 261 | 156 | 5 | 96 | 353 | 84 | 339 | 6.16e-46 | 160 |
| MS.gene78707.t1 | MTR_5g015670 | 39.196 | 199 | 113 | 3 | 95 | 290 | 101 | 294 | 6.27e-37 | 137 |
| MS.gene78707.t1 | MTR_2g089490 | 32.069 | 290 | 172 | 8 | 74 | 353 | 28 | 302 | 2.51e-35 | 131 |
| MS.gene78707.t1 | MTR_2g011500 | 35.268 | 224 | 131 | 5 | 99 | 319 | 86 | 298 | 2.60e-35 | 131 |
| MS.gene78707.t1 | MTR_2g089490 | 31.597 | 288 | 173 | 8 | 74 | 353 | 28 | 299 | 2.77e-33 | 125 |
| MS.gene78707.t1 | MTR_3g103080 | 42.857 | 154 | 81 | 3 | 95 | 246 | 65 | 213 | 6.71e-31 | 119 |
| MS.gene78707.t1 | MTR_4g095790 | 29.915 | 234 | 144 | 7 | 97 | 319 | 68 | 292 | 3.21e-15 | 75.9 |
| MS.gene78707.t1 | MTR_3g060770 | 31.765 | 170 | 102 | 5 | 92 | 255 | 56 | 217 | 3.66e-15 | 75.5 |
| MS.gene78707.t1 | MTR_3g107970 | 29.121 | 182 | 116 | 4 | 74 | 251 | 225 | 397 | 5.96e-15 | 76.3 |
| MS.gene78707.t1 | MTR_1g011470 | 28.492 | 179 | 123 | 3 | 73 | 251 | 172 | 345 | 1.50e-14 | 74.7 |
| MS.gene78707.t1 | MTR_3g060820 | 30.000 | 170 | 105 | 5 | 92 | 255 | 46 | 207 | 2.80e-13 | 69.7 |
| MS.gene78707.t1 | MTR_3g061680 | 30.286 | 175 | 107 | 6 | 92 | 258 | 46 | 213 | 2.76e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78707.t1 | AT5G65420 | 50.545 | 275 | 118 | 6 | 62 | 332 | 42 | 302 | 3.15e-82 | 253 |
| MS.gene78707.t1 | AT5G65420 | 49.123 | 285 | 117 | 7 | 62 | 332 | 42 | 312 | 5.02e-81 | 250 |
| MS.gene78707.t1 | AT2G22490 | 45.338 | 311 | 159 | 5 | 26 | 329 | 25 | 331 | 7.57e-81 | 251 |
| MS.gene78707.t1 | AT2G22490 | 45.016 | 311 | 161 | 4 | 26 | 329 | 25 | 332 | 1.57e-80 | 250 |
| MS.gene78707.t1 | AT5G10440 | 54.545 | 231 | 102 | 1 | 59 | 289 | 31 | 258 | 2.36e-78 | 243 |
| MS.gene78707.t1 | AT5G65420 | 48.708 | 271 | 118 | 5 | 10 | 278 | 9 | 260 | 1.69e-76 | 237 |
| MS.gene78707.t1 | AT5G10440 | 56.983 | 179 | 77 | 0 | 59 | 237 | 31 | 209 | 1.70e-66 | 209 |
| MS.gene78707.t1 | AT5G65420 | 55.932 | 177 | 77 | 1 | 62 | 237 | 42 | 218 | 4.71e-62 | 199 |
| MS.gene78707.t1 | AT1G70210 | 44.444 | 243 | 127 | 3 | 57 | 295 | 45 | 283 | 5.93e-62 | 202 |
| MS.gene78707.t1 | AT3G50070 | 41.518 | 224 | 120 | 4 | 97 | 317 | 86 | 301 | 3.69e-46 | 161 |
| MS.gene78707.t1 | AT4G34160 | 39.604 | 202 | 119 | 2 | 97 | 296 | 87 | 287 | 4.50e-45 | 159 |
| MS.gene78707.t1 | AT5G67260 | 39.474 | 228 | 122 | 6 | 97 | 319 | 96 | 312 | 4.39e-43 | 153 |
| MS.gene78707.t1 | AT5G67260 | 39.207 | 227 | 124 | 5 | 97 | 319 | 96 | 312 | 9.01e-43 | 153 |
| MS.gene78707.t1 | AT4G37630 | 43.421 | 152 | 84 | 2 | 101 | 251 | 76 | 226 | 4.86e-32 | 121 |
| MS.gene78707.t1 | AT4G03270 | 31.338 | 284 | 168 | 11 | 74 | 352 | 35 | 296 | 3.25e-31 | 120 |
| MS.gene78707.t1 | AT4G37630 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 8.77e-31 | 118 |
| MS.gene78707.t1 | AT4G37630 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 3.59e-30 | 118 |
| MS.gene78707.t1 | AT4G03270 | 31.338 | 284 | 167 | 12 | 74 | 352 | 35 | 295 | 2.34e-29 | 115 |
| MS.gene78707.t1 | AT5G02110 | 26.383 | 235 | 159 | 6 | 64 | 294 | 45 | 269 | 3.44e-18 | 85.1 |
| MS.gene78707.t1 | AT1G20610 | 31.429 | 210 | 127 | 8 | 82 | 288 | 197 | 392 | 1.06e-15 | 78.6 |
| MS.gene78707.t1 | AT1G77390 | 29.609 | 179 | 119 | 4 | 74 | 251 | 190 | 362 | 9.37e-15 | 75.5 |
| MS.gene78707.t1 | AT5G02110 | 29.032 | 155 | 104 | 3 | 140 | 294 | 92 | 240 | 1.10e-14 | 74.3 |
| MS.gene78707.t1 | AT4G37490 | 29.143 | 175 | 114 | 4 | 77 | 251 | 179 | 343 | 1.57e-14 | 74.7 |
| MS.gene78707.t1 | AT3G11520 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 1.63e-14 | 74.7 |
| MS.gene78707.t1 | AT3G11520 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 2.57e-14 | 73.9 |
| MS.gene78707.t1 | AT1G76310 | 26.728 | 217 | 149 | 4 | 72 | 288 | 187 | 393 | 2.09e-13 | 71.6 |
| MS.gene78707.t1 | AT1G76310 | 28.889 | 180 | 118 | 4 | 72 | 251 | 187 | 356 | 5.87e-13 | 69.7 |
Find 79 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCAGGTCTTGACTTCT+TGG | 0.156748 | 3.2:-83961945 | MS.gene78707:intron |
| TCCTCAGCCTCTTGATTTGC+AGG | 0.243856 | 3.2:-83962405 | MS.gene78707:intron |
| TAGGTTGCAGTTTGGAGATT+TGG | 0.254751 | 3.2:-83963123 | MS.gene78707:CDS |
| GGCTGTAGCTTGCTTATCTT+TGG | 0.277760 | 3.2:-83962453 | MS.gene78707:CDS |
| GTTCGAGCACATTTCGGTTT+TGG | 0.278825 | 3.2:-83962660 | MS.gene78707:CDS |
| GAATCGATCCAAGTAATTAA+TGG | 0.321350 | 3.2:+83962617 | None:intergenic |
| ACGAGGATTTGTGGCGTTCT+AGG | 0.359940 | 3.2:-83963274 | MS.gene78707:CDS |
| TTATCTATCCATTAATTACT+TGG | 0.373505 | 3.2:-83962625 | MS.gene78707:CDS |
| GTAGTAGCCCAGATGCTAAA+AGG | 0.388944 | 3.2:-83961293 | MS.gene78707:CDS |
| CACTGTTCAATGACATCTCT+TGG | 0.397078 | 3.2:+83961457 | None:intergenic |
| TTTGCTACCATCAATTGCTT+GGG | 0.406060 | 3.2:+83961868 | None:intergenic |
| AAACATTTAGGTACCTTTGA+TGG | 0.406098 | 3.2:+83962086 | None:intergenic |
| TATTTGAATAGGTTGCAGTT+TGG | 0.406265 | 3.2:-83963131 | MS.gene78707:CDS |
| CTGGTGCTGATTATTTGAAT+AGG | 0.407191 | 3.2:-83963142 | MS.gene78707:CDS |
| CTCTGCAATGGCAACTCATC+AGG | 0.411138 | 3.2:+83963212 | None:intergenic |
| ATTTGCTACCATCAATTGCT+TGG | 0.417048 | 3.2:+83961867 | None:intergenic |
| CTGTGGCAACATGTGTTGTT+GGG | 0.427417 | 3.2:-83961895 | MS.gene78707:CDS |
| TTATAGGTTCGAGCACATTT+CGG | 0.428580 | 3.2:-83962666 | MS.gene78707:intron |
| TGAATATGGTGGTGGTGGTT+CGG | 0.429440 | 3.2:-83963306 | MS.gene78707:CDS |
| ATTATTGAAGTGTGTTGAAA+AGG | 0.434517 | 3.2:-83961481 | MS.gene78707:CDS |
| TTTAGCTTCAAACACAAACT+TGG | 0.447842 | 3.2:+83962272 | None:intergenic |
| AGCTAAAACCATTCAGAGAA+TGG | 0.449900 | 3.2:-83962256 | MS.gene78707:CDS |
| AACACACCCATTGGGCTTTG+AGG | 0.450882 | 3.2:+83961390 | None:intergenic |
| ATTGCAGAGTGAAGAGTGTT+TGG | 0.451360 | 3.2:-83963198 | MS.gene78707:CDS |
| CATCATCATTAATCTTAGAA+AGG | 0.451623 | 3.2:+83962163 | None:intergenic |
| TAAAAGCTCCATTCTCTGAA+TGG | 0.457326 | 3.2:+83962248 | None:intergenic |
| AACACCATCATAACGTTGTT+GGG | 0.457610 | 3.2:+83963235 | None:intergenic |
| GACACCAATGCTGGTGGTGG+TGG | 0.467695 | 3.2:-83961336 | MS.gene78707:CDS |
| TGGTGGTGGTGGTTCGGTGG+AGG | 0.471956 | 3.2:-83963300 | MS.gene78707:CDS |
| AAACATTCAATGAAGGAGAA+TGG | 0.477187 | 3.2:+83962186 | None:intergenic |
| GGGGAAACCCAAGCAATTGA+TGG | 0.479575 | 3.2:-83961875 | MS.gene78707:CDS |
| AATGTATCCAACACACCCAT+TGG | 0.480352 | 3.2:+83961381 | None:intergenic |
| AGAGTGTTTGGTTCTGATGT+TGG | 0.485214 | 3.2:-83963186 | MS.gene78707:CDS |
| TGGAGGTGTACGAGGATTTG+TGG | 0.493364 | 3.2:-83963283 | MS.gene78707:CDS |
| AGCTTGGACAATGCAATTGT+TGG | 0.494353 | 3.2:-83962474 | MS.gene78707:CDS |
| GAACACCATCATAACGTTGT+TGG | 0.495114 | 3.2:+83963234 | None:intergenic |
| GCTGTGGCAACATGTGTTGT+TGG | 0.496061 | 3.2:-83961896 | MS.gene78707:CDS |
| TCTGATTCAATACATAGAAA+AGG | 0.496974 | 3.2:-83961834 | MS.gene78707:intron |
| ATTGGGCTTTGAGGCACACT+AGG | 0.501893 | 3.2:+83961399 | None:intergenic |
| AATTTCAGAAGGGAAGAGCT+TGG | 0.509011 | 3.2:-83962490 | MS.gene78707:intron |
| GATGGTGAATATGGTGGTGG+TGG | 0.511384 | 3.2:-83963311 | MS.gene78707:CDS |
| ATGTATCCAACACACCCATT+GGG | 0.513076 | 3.2:+83961382 | None:intergenic |
| CTACAAAAGCTCTGATCCAC+AGG | 0.515810 | 3.2:+83961254 | None:intergenic |
| ACAGCTGCTGCAATCTCTGA+TGG | 0.518373 | 3.2:+83961914 | None:intergenic |
| TTTGATGATGGTGAATATGG+TGG | 0.519686 | 3.2:-83963317 | MS.gene78707:CDS |
| CTAGAAACACAATCAAAACT+TGG | 0.521362 | 3.2:+83963371 | None:intergenic |
| AGAAAGGAAACATTCAATGA+AGG | 0.530701 | 3.2:+83962179 | None:intergenic |
| ATATGGTGGTGGTGGTTCGG+TGG | 0.533539 | 3.2:-83963303 | MS.gene78707:CDS |
| TGAACCACCACCACCAGCAT+TGG | 0.536808 | 3.2:+83961332 | None:intergenic |
| AGTCATCGATTGGATTCAAA+AGG | 0.537030 | 3.2:-83963081 | MS.gene78707:intron |
| ACCTGCAAATCAAGAGGCTG+AGG | 0.539718 | 3.2:+83962404 | None:intergenic |
| CTAGAAATGAAGTCATCGAT+TGG | 0.540927 | 3.2:-83963091 | MS.gene78707:CDS |
| TAGTACTCAGCACATTGAAG+TGG | 0.542367 | 3.2:-83962227 | MS.gene78707:CDS |
| GATGATGGTGAATATGGTGG+TGG | 0.549715 | 3.2:-83963314 | MS.gene78707:CDS |
| CAGGGAATTCATACACAGAA+AGG | 0.549830 | 3.2:+83962595 | None:intergenic |
| AGTGTGCCTCAAAGCCCAAT+GGG | 0.552076 | 3.2:-83961396 | MS.gene78707:CDS |
| AAAGAGTGTCAGCAATGGCC+TGG | 0.553578 | 3.2:-83963161 | MS.gene78707:CDS |
| ATCAGAGATTGCAGCAGCTG+TGG | 0.553736 | 3.2:-83961912 | MS.gene78707:CDS |
| ATGACCCAACAACGTTATGA+TGG | 0.554188 | 3.2:-83963239 | MS.gene78707:CDS |
| TAGTGTGCCTCAAAGCCCAA+TGG | 0.559807 | 3.2:-83961397 | MS.gene78707:CDS |
| TATGTTCTTCAGTGCAAAGA+AGG | 0.563629 | 3.2:+83963348 | None:intergenic |
| TCAAAGCCCAATGGGTGTGT+TGG | 0.579780 | 3.2:-83961388 | MS.gene78707:CDS |
| CTTATATCAAGCACCATCAA+AGG | 0.583083 | 3.2:-83962099 | MS.gene78707:intron |
| TCATTGAACAGTGTGTTCAC+TGG | 0.586627 | 3.2:-83961447 | MS.gene78707:CDS |
| AAACACTCTTCACTCTGCAA+TGG | 0.596088 | 3.2:+83963200 | None:intergenic |
| GAACAGTGTGTTCACTGGCA+AGG | 0.596096 | 3.2:-83961442 | MS.gene78707:CDS |
| TTGGGCTTTGAGGCACACTA+GGG | 0.596531 | 3.2:+83961400 | None:intergenic |
| ATCTTTGGCAGCTAAAGTAG+AGG | 0.600255 | 3.2:-83962438 | MS.gene78707:CDS |
| AATCCTACCTGCAAATCAAG+AGG | 0.610223 | 3.2:+83962398 | None:intergenic |
| CTATTCAAATAATCAGCACC+AGG | 0.612948 | 3.2:+83963143 | None:intergenic |
| ATGATGATAAGAGTTCATCA+AGG | 0.613251 | 3.2:-83962146 | MS.gene78707:CDS |
| TGGTTCGGTGGAGGTGTACG+AGG | 0.618407 | 3.2:-83963291 | MS.gene78707:CDS |
| GATGACACCAATGCTGGTGG+TGG | 0.635406 | 3.2:-83961339 | MS.gene78707:CDS |
| AAAAGTGATGACACCAATGC+TGG | 0.640482 | 3.2:-83961345 | MS.gene78707:CDS |
| ATGGATAGATAAGCACAAAG+AGG | 0.659013 | 3.2:+83962636 | None:intergenic |
| TGTGGCAACATGTGTTGTTG+GGG | 0.663318 | 3.2:-83961894 | MS.gene78707:CDS |
| AGGAAGCTAAACAAAGCCTG+TGG | 0.672496 | 3.2:-83961270 | MS.gene78707:CDS |
| GTAGCCCAGATGCTAAAAGG+AGG | 0.696973 | 3.2:-83961290 | MS.gene78707:CDS |
| AGTGATGACACCAATGCTGG+TGG | 0.729525 | 3.2:-83961342 | MS.gene78707:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGTTGATTAATTTTGA+TGG | - | chr3.2:83962655-83962674 | MS.gene78707:CDS | 15.0% |
| !!! | TTTTATGAAATCTTTTTGAT+GGG | - | chr3.2:83961636-83961655 | MS.gene78707:intron | 15.0% |
| !!! | TTTTTATGAAATCTTTTTGA+TGG | - | chr3.2:83961635-83961654 | MS.gene78707:intron | 15.0% |
| !! | AATACATAGAAAAGGTAAAA+TGG | - | chr3.2:83962805-83962824 | MS.gene78707:intron | 20.0% |
| !! | TATTAACAATGTGTTAATTG+TGG | - | chr3.2:83963113-83963132 | MS.gene78707:CDS | 20.0% |
| !! | TTATCTATCCATTAATTACT+TGG | - | chr3.2:83962006-83962025 | MS.gene78707:intron | 20.0% |
| !!! | CAATTTTCTTTGTGATTTAT+AGG | - | chr3.2:83961949-83961968 | MS.gene78707:intron | 20.0% |
| !!! | TTAATTTTTCATCAAAACAG+TGG | - | chr3.2:83961684-83961703 | MS.gene78707:intron | 20.0% |
| ! | AGTGAAAACAATCATGAATT+AGG | - | chr3.2:83962628-83962647 | MS.gene78707:CDS | 25.0% |
| ! | ATTATTGAAGTGTGTTGAAA+AGG | - | chr3.2:83963150-83963169 | MS.gene78707:CDS | 25.0% |
| ! | ATTGTGATATGTATCCATAA+AGG | + | chr3.2:83961754-83961773 | None:intergenic | 25.0% |
| ! | CATCATCATTAATCTTAGAA+AGG | + | chr3.2:83962471-83962490 | None:intergenic | 25.0% |
| ! | CTCATATAACAACTTAAACA+AGG | - | chr3.2:83962990-83963009 | MS.gene78707:intron | 25.0% |
| ! | GAAGTTCAACACAAAAAAAT+AGG | - | chr3.2:83962077-83962096 | MS.gene78707:intron | 25.0% |
| ! | TCGTTATTCATTAACTTACA+GGG | + | chr3.2:83962057-83962076 | None:intergenic | 25.0% |
| ! | TCTGATTCAATACATAGAAA+AGG | - | chr3.2:83962797-83962816 | MS.gene78707:intron | 25.0% |
| ! | TTATGTTTCCAATTTCAGAA+GGG | - | chr3.2:83962131-83962150 | MS.gene78707:CDS | 25.0% |
| ! | TTGTGATATGTATCCATAAA+GGG | + | chr3.2:83961753-83961772 | None:intergenic | 25.0% |
| ! | TTTAATGAACTATCCCTTTA+TGG | - | chr3.2:83961737-83961756 | MS.gene78707:intron | 25.0% |
| !! | ATATTGATTGTGAAAACTGA+AGG | - | chr3.2:83961598-83961617 | MS.gene78707:intron | 25.0% |
| !! | TACATTGTTTTCTTGTCATT+TGG | + | chr3.2:83962840-83962859 | None:intergenic | 25.0% |
| AAACATTCAATGAAGGAGAA+TGG | + | chr3.2:83962448-83962467 | None:intergenic | 30.0% | |
| AAACATTTAGGTACCTTTGA+TGG | + | chr3.2:83962548-83962567 | None:intergenic | 30.0% | |
| AACTTGTCAATTTCAATGCT+TGG | - | chr3.2:83962259-83962278 | MS.gene78707:CDS | 30.0% | |
| ACATAGAAAAGGTAAAATGG+TGG | - | chr3.2:83962808-83962827 | MS.gene78707:intron | 30.0% | |
| AGAAAGGAAACATTCAATGA+AGG | + | chr3.2:83962455-83962474 | None:intergenic | 30.0% | |
| ATGATGATAAGAGTTCATCA+AGG | - | chr3.2:83962485-83962504 | MS.gene78707:CDS | 30.0% | |
| CTAGAAACACAATCAAAACT+TGG | + | chr3.2:83961263-83961282 | None:intergenic | 30.0% | |
| CTCGTTATTCATTAACTTAC+AGG | + | chr3.2:83962058-83962077 | None:intergenic | 30.0% | |
| GAATCGATCCAAGTAATTAA+TGG | + | chr3.2:83962017-83962036 | None:intergenic | 30.0% | |
| GTGTTAATTGTGGTTATTAC+AGG | - | chr3.2:83963123-83963142 | MS.gene78707:CDS | 30.0% | |
| GTTATGTTTCCAATTTCAGA+AGG | - | chr3.2:83962130-83962149 | MS.gene78707:CDS | 30.0% | |
| TAGCACATTTGATTGATGAA+TGG | - | chr3.2:83961861-83961880 | MS.gene78707:CDS | 30.0% | |
| TATTTGAATAGGTTGCAGTT+TGG | - | chr3.2:83961500-83961519 | MS.gene78707:intron | 30.0% | |
| TCATCAATTCATCAGATACA+AGG | + | chr3.2:83961822-83961841 | None:intergenic | 30.0% | |
| TTAGTTCATACATACTCTCA+AGG | - | chr3.2:83962878-83962897 | MS.gene78707:intron | 30.0% | |
| ! | ATAGGCTTTATATTCTGCAT+TGG | - | chr3.2:83962095-83962114 | MS.gene78707:intron | 30.0% |
| ! | ATCCATTGCTTGATAACTAT+TGG | - | chr3.2:83961791-83961810 | MS.gene78707:intron | 30.0% |
| ! | ATTTTTCATCAAAACAGTGG+CGG | - | chr3.2:83961687-83961706 | MS.gene78707:intron | 30.0% |
| ! | TGATGAATTGATGACTTGAA+TGG | - | chr3.2:83961828-83961847 | MS.gene78707:intron | 30.0% |
| ! | TTTAGCTTCAAACACAAACT+TGG | + | chr3.2:83962362-83962381 | None:intergenic | 30.0% |
| !! | ATTGATGAATGGATTGAGAT+TGG | - | chr3.2:83961872-83961891 | MS.gene78707:CDS | 30.0% |
| !! | TGTTTTCTTGTCATTTGGAA+AGG | + | chr3.2:83962835-83962854 | None:intergenic | 30.0% |
| !!! | GTTTTTGATGATGGTGAATA+TGG | - | chr3.2:83961311-83961330 | MS.gene78707:CDS | 30.0% |
| AACACCATCATAACGTTGTT+GGG | + | chr3.2:83961399-83961418 | None:intergenic | 35.0% | |
| AGCTAAAACCATTCAGAGAA+TGG | - | chr3.2:83962375-83962394 | MS.gene78707:intron | 35.0% | |
| ATGGATAGATAAGCACAAAG+AGG | + | chr3.2:83961998-83962017 | None:intergenic | 35.0% | |
| CTAGAAATGAAGTCATCGAT+TGG | - | chr3.2:83961540-83961559 | MS.gene78707:intron | 35.0% | |
| CTATTCAAATAATCAGCACC+AGG | + | chr3.2:83961491-83961510 | None:intergenic | 35.0% | |
| CTTATATCAAGCACCATCAA+AGG | - | chr3.2:83962532-83962551 | MS.gene78707:intron | 35.0% | |
| GTCCAATAGTTATCAAGCAA+TGG | + | chr3.2:83961796-83961815 | None:intergenic | 35.0% | |
| TAAAAGCTCCATTCTCTGAA+TGG | + | chr3.2:83962386-83962405 | None:intergenic | 35.0% | |
| TATGTTCTTCAGTGCAAAGA+AGG | + | chr3.2:83961286-83961305 | None:intergenic | 35.0% | |
| TCACTTGAGCAATGAAGTTA+GGG | + | chr3.2:83962575-83962594 | None:intergenic | 35.0% | |
| TTATAGGTTCGAGCACATTT+CGG | - | chr3.2:83961965-83961984 | MS.gene78707:intron | 35.0% | |
| TTCACTTGAGCAATGAAGTT+AGG | + | chr3.2:83962576-83962595 | None:intergenic | 35.0% | |
| TTTGCTACCATCAATTGCTT+GGG | + | chr3.2:83962766-83962785 | None:intergenic | 35.0% | |
| ! | AGTCATCGATTGGATTCAAA+AGG | - | chr3.2:83961550-83961569 | MS.gene78707:intron | 35.0% |
| ! | ATGATTGTTTTCACTGCAAG+GGG | + | chr3.2:83962623-83962642 | None:intergenic | 35.0% |
| ! | ATTTGCTACCATCAATTGCT+TGG | + | chr3.2:83962767-83962786 | None:intergenic | 35.0% |
| ! | CATGATTGTTTTCACTGCAA+GGG | + | chr3.2:83962624-83962643 | None:intergenic | 35.0% |
| ! | GTTTGGAGATTTGGATTTTC+AGG | - | chr3.2:83961517-83961536 | MS.gene78707:intron | 35.0% |
| ! | TCATGATTGTTTTCACTGCA+AGG | + | chr3.2:83962625-83962644 | None:intergenic | 35.0% |
| !! | CATAGCAGTGTTTTTGATGA+TGG | - | chr3.2:83961302-83961321 | MS.gene78707:CDS | 35.0% |
| !! | CTGGTGCTGATTATTTGAAT+AGG | - | chr3.2:83961489-83961508 | MS.gene78707:CDS | 35.0% |
| !! | TTTGATGATGGTGAATATGG+TGG | - | chr3.2:83961314-83961333 | MS.gene78707:CDS | 35.0% |
| !!! | CGTTTTAATTGGGTTTGGAT+TGG | - | chr3.2:83961713-83961732 | MS.gene78707:intron | 35.0% |
| AAAAGTGATGACACCAATGC+TGG | - | chr3.2:83963286-83963305 | MS.gene78707:CDS | 40.0% | |
| AAACACTCTTCACTCTGCAA+TGG | + | chr3.2:83961434-83961453 | None:intergenic | 40.0% | |
| AATCCTACCTGCAAATCAAG+AGG | + | chr3.2:83962236-83962255 | None:intergenic | 40.0% | |
| AATGTATCCAACACACCCAT+TGG | + | chr3.2:83963253-83963272 | None:intergenic | 40.0% | |
| AATTTCAGAAGGGAAGAGCT+TGG | - | chr3.2:83962141-83962160 | MS.gene78707:CDS | 40.0% | |
| AGCTTGGACAATGCAATTGT+TGG | - | chr3.2:83962157-83962176 | MS.gene78707:CDS | 40.0% | |
| AGTTAGGGAGGGAAACATTT+AGG | + | chr3.2:83962560-83962579 | None:intergenic | 40.0% | |
| ATCTTTGGCAGCTAAAGTAG+AGG | - | chr3.2:83962193-83962212 | MS.gene78707:CDS | 40.0% | |
| ATGACCCAACAACGTTATGA+TGG | - | chr3.2:83961392-83961411 | MS.gene78707:CDS | 40.0% | |
| ATGTATCCAACACACCCATT+GGG | + | chr3.2:83963252-83963271 | None:intergenic | 40.0% | |
| CACTGTTCAATGACATCTCT+TGG | + | chr3.2:83963177-83963196 | None:intergenic | 40.0% | |
| CAGGGAATTCATACACAGAA+AGG | + | chr3.2:83962039-83962058 | None:intergenic | 40.0% | |
| GAACACCATCATAACGTTGT+TGG | + | chr3.2:83961400-83961419 | None:intergenic | 40.0% | |
| TAGGTTGCAGTTTGGAGATT+TGG | - | chr3.2:83961508-83961527 | MS.gene78707:intron | 40.0% | |
| TAGTACTCAGCACATTGAAG+TGG | - | chr3.2:83962404-83962423 | MS.gene78707:intron | 40.0% | |
| TCATTGAACAGTGTGTTCAC+TGG | - | chr3.2:83963184-83963203 | MS.gene78707:CDS | 40.0% | |
| TTGAGCAATGAAGTTAGGGA+GGG | + | chr3.2:83962571-83962590 | None:intergenic | 40.0% | |
| ! | TGATGGTGTGAATTCAATGC+AGG | - | chr3.2:83962672-83962691 | MS.gene78707:intron | 40.0% |
| !! | AAGCTCTTCCCTTCTGAAAT+TGG | + | chr3.2:83962142-83962161 | None:intergenic | 40.0% |
| !! | AGAGTGTTTGGTTCTGATGT+TGG | - | chr3.2:83961445-83961464 | MS.gene78707:CDS | 40.0% |
| !! | ATTGCAGAGTGAAGAGTGTT+TGG | - | chr3.2:83961433-83961452 | MS.gene78707:CDS | 40.0% |
| !! | CTTGATTTGCAGGTAGGATT+TGG | - | chr3.2:83962236-83962255 | MS.gene78707:CDS | 40.0% |
| !! | GTCGATTTTTGTGTGCAGAT+TGG | - | chr3.2:83962331-83962350 | MS.gene78707:intron | 40.0% |
| !! | TGGAAAAAGAGTGTCAGCAA+TGG | - | chr3.2:83961465-83961484 | MS.gene78707:CDS | 40.0% |
| AGGAAGCTAAACAAAGCCTG+TGG | - | chr3.2:83963361-83963380 | MS.gene78707:CDS | 45.0% | |
| CAATGCAGGTCTTGACTTCT+TGG | - | chr3.2:83962686-83962705 | MS.gene78707:intron | 45.0% | |
| CTTGAGCAATGAAGTTAGGG+AGG | + | chr3.2:83962572-83962591 | None:intergenic | 45.0% | |
| GTAGTAGCCCAGATGCTAAA+AGG | - | chr3.2:83963338-83963357 | MS.gene78707:CDS | 45.0% | |
| TTTCATCAAAACAGTGGCGG+CGG | - | chr3.2:83961690-83961709 | MS.gene78707:intron | 45.0% | |
| ! | AGCTTCCTCCTTTTAGCATC+TGG | + | chr3.2:83963349-83963368 | None:intergenic | 45.0% |
| ! | CTACAAAAGCTCTGATCCAC+AGG | + | chr3.2:83963380-83963399 | None:intergenic | 45.0% |
| ! | CTGTGGCAACATGTGTTGTT+GGG | - | chr3.2:83962736-83962755 | MS.gene78707:intron | 45.0% |
| ! | GATGATGGTGAATATGGTGG+TGG | - | chr3.2:83961317-83961336 | MS.gene78707:CDS | 45.0% |
| ! | GCTTCCTCCTTTTAGCATCT+GGG | + | chr3.2:83963348-83963367 | None:intergenic | 45.0% |
| ! | GTTCGAGCACATTTCGGTTT+TGG | - | chr3.2:83961971-83961990 | MS.gene78707:intron | 45.0% |
| ! | TGTGGCAACATGTGTTGTTG+GGG | - | chr3.2:83962737-83962756 | MS.gene78707:intron | 45.0% |
| ! | TTGTTTTCACTGCAAGGGGT+TGG | + | chr3.2:83962619-83962638 | None:intergenic | 45.0% |
| !! | GGCTGTAGCTTGCTTATCTT+TGG | - | chr3.2:83962178-83962197 | MS.gene78707:CDS | 45.0% |
| !! | TGAATATGGTGGTGGTGGTT+CGG | - | chr3.2:83961325-83961344 | MS.gene78707:CDS | 45.0% |
| AACACACCCATTGGGCTTTG+AGG | + | chr3.2:83963244-83963263 | None:intergenic | 50.0% | |
| ACAGCTGCTGCAATCTCTGA+TGG | + | chr3.2:83962720-83962739 | None:intergenic | 50.0% | |
| ACCTGCAAATCAAGAGGCTG+AGG | + | chr3.2:83962230-83962249 | None:intergenic | 50.0% | |
| ACGAGGATTTGTGGCGTTCT+AGG | - | chr3.2:83961357-83961376 | MS.gene78707:CDS | 50.0% | |
| AGTGATGACACCAATGCTGG+TGG | - | chr3.2:83963289-83963308 | MS.gene78707:CDS | 50.0% | |
| AGTGTGCCTCAAAGCCCAAT+GGG | - | chr3.2:83963235-83963254 | MS.gene78707:CDS | 50.0% | |
| ATCAGAGATTGCAGCAGCTG+TGG | - | chr3.2:83962719-83962738 | MS.gene78707:intron | 50.0% | |
| CTCTGCAATGGCAACTCATC+AGG | + | chr3.2:83961422-83961441 | None:intergenic | 50.0% | |
| GAACAGTGTGTTCACTGGCA+AGG | - | chr3.2:83963189-83963208 | MS.gene78707:CDS | 50.0% | |
| GCTGTGGCAACATGTGTTGT+TGG | - | chr3.2:83962735-83962754 | MS.gene78707:intron | 50.0% | |
| GGGGAAACCCAAGCAATTGA+TGG | - | chr3.2:83962756-83962775 | MS.gene78707:intron | 50.0% | |
| GTAGCCCAGATGCTAAAAGG+AGG | - | chr3.2:83963341-83963360 | MS.gene78707:CDS | 50.0% | |
| TAGTGTGCCTCAAAGCCCAA+TGG | - | chr3.2:83963234-83963253 | MS.gene78707:CDS | 50.0% | |
| TCAAAGCCCAATGGGTGTGT+TGG | - | chr3.2:83963243-83963262 | MS.gene78707:CDS | 50.0% | |
| ! | TGGAGGTGTACGAGGATTTG+TGG | - | chr3.2:83961348-83961367 | MS.gene78707:CDS | 50.0% |
| !! | AAAGAGTGTCAGCAATGGCC+TGG | - | chr3.2:83961470-83961489 | MS.gene78707:CDS | 50.0% |
| !! | ATTGGGCTTTGAGGCACACT+AGG | + | chr3.2:83963235-83963254 | None:intergenic | 50.0% |
| !! | CAGCCTCTTGATTTGCAGGT+AGG | - | chr3.2:83962230-83962249 | MS.gene78707:CDS | 50.0% |
| !! | GATGGTGAATATGGTGGTGG+TGG | - | chr3.2:83961320-83961339 | MS.gene78707:CDS | 50.0% |
| !! | TCCTCAGCCTCTTGATTTGC+AGG | - | chr3.2:83962226-83962245 | MS.gene78707:CDS | 50.0% |
| !! | TTGGGCTTTGAGGCACACTA+GGG | + | chr3.2:83963234-83963253 | None:intergenic | 50.0% |
| !!! | GGCGGCGTTTTAATTGGGTT+TGG | - | chr3.2:83961708-83961727 | MS.gene78707:intron | 50.0% |
| GATGACACCAATGCTGGTGG+TGG | - | chr3.2:83963292-83963311 | MS.gene78707:CDS | 55.0% | |
| TGAACCACCACCACCAGCAT+TGG | + | chr3.2:83963302-83963321 | None:intergenic | 55.0% | |
| !! | AGTGGCGGCGGCGTTTTAAT+TGG | - | chr3.2:83961702-83961721 | MS.gene78707:intron | 55.0% |
| !! | ATATGGTGGTGGTGGTTCGG+TGG | - | chr3.2:83961328-83961347 | MS.gene78707:CDS | 55.0% |
| !!! | GTGGCGGCGGCGTTTTAATT+GGG | - | chr3.2:83961703-83961722 | MS.gene78707:intron | 55.0% |
| !! | GACACCAATGCTGGTGGTGG+TGG | - | chr3.2:83963295-83963314 | MS.gene78707:CDS | 60.0% |
| !! | TGGTTCGGTGGAGGTGTACG+AGG | - | chr3.2:83961340-83961359 | MS.gene78707:CDS | 60.0% |
| !! | TGGTGGTGGTGGTTCGGTGG+AGG | - | chr3.2:83961331-83961350 | MS.gene78707:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 83961254 | 83963399 | 83961254 | ID=MS.gene78707 |
| chr3.2 | mRNA | 83961254 | 83963399 | 83961254 | ID=MS.gene78707.t1;Parent=MS.gene78707 |
| chr3.2 | exon | 83963082 | 83963399 | 83963082 | ID=MS.gene78707.t1.exon1;Parent=MS.gene78707.t1 |
| chr3.2 | CDS | 83963082 | 83963399 | 83963082 | ID=cds.MS.gene78707.t1;Parent=MS.gene78707.t1 |
| chr3.2 | exon | 83962596 | 83962682 | 83962596 | ID=MS.gene78707.t1.exon2;Parent=MS.gene78707.t1 |
| chr3.2 | CDS | 83962596 | 83962682 | 83962596 | ID=cds.MS.gene78707.t1;Parent=MS.gene78707.t1 |
| chr3.2 | exon | 83962406 | 83962504 | 83962406 | ID=MS.gene78707.t1.exon3;Parent=MS.gene78707.t1 |
| chr3.2 | CDS | 83962406 | 83962504 | 83962406 | ID=cds.MS.gene78707.t1;Parent=MS.gene78707.t1 |
| chr3.2 | exon | 83962100 | 83962304 | 83962100 | ID=MS.gene78707.t1.exon4;Parent=MS.gene78707.t1 |
| chr3.2 | CDS | 83962100 | 83962304 | 83962100 | ID=cds.MS.gene78707.t1;Parent=MS.gene78707.t1 |
| chr3.2 | exon | 83961835 | 83961959 | 83961835 | ID=MS.gene78707.t1.exon5;Parent=MS.gene78707.t1 |
| chr3.2 | CDS | 83961835 | 83961959 | 83961835 | ID=cds.MS.gene78707.t1;Parent=MS.gene78707.t1 |
| chr3.2 | exon | 83961254 | 83961508 | 83961254 | ID=MS.gene78707.t1.exon6;Parent=MS.gene78707.t1 |
| chr3.2 | CDS | 83961254 | 83961508 | 83961254 | ID=cds.MS.gene78707.t1;Parent=MS.gene78707.t1 |
| Gene Sequence |
| Protein sequence |
