Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78708.t1 | XP_003602948.2 | 97 | 760 | 22 | 1 | 1 | 760 | 1 | 759 | 0.00E+00 | 1422.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78708.t1 | Q8N5D0 | 28.6 | 721 | 364 | 22 | 38 | 725 | 34 | 636 | 1.1e-67 | 259.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78708.t1 | G7J574 | 97.0 | 760 | 22 | 1 | 1 | 760 | 1 | 759 | 0.0e+00 | 1422.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050559 | MS.gene78708 | 0.805642 | 1.21E-49 | -1.69E-46 |
MS.gene051279 | MS.gene78708 | 0.812472 | 4.17E-51 | -1.69E-46 |
MS.gene052239 | MS.gene78708 | -0.804165 | 2.46E-49 | -1.69E-46 |
MS.gene05686 | MS.gene78708 | 0.833102 | 6.47E-56 | -1.69E-46 |
MS.gene056973 | MS.gene78708 | 0.808639 | 2.81E-50 | -1.69E-46 |
MS.gene057598 | MS.gene78708 | 0.853878 | 1.79E-61 | -1.69E-46 |
MS.gene059008 | MS.gene78708 | 0.80424 | 2.38E-49 | -1.69E-46 |
MS.gene060920 | MS.gene78708 | 0.815823 | 7.59E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78708.t1 | MTR_3g100690 | 97.632 | 760 | 17 | 1 | 1 | 760 | 1 | 759 | 0.0 | 1547 |
MS.gene78708.t1 | MTR_2g093200 | 33.670 | 297 | 168 | 7 | 14 | 310 | 14 | 281 | 8.46e-38 | 148 |
MS.gene78708.t1 | MTR_2g093200 | 34.848 | 132 | 76 | 3 | 612 | 742 | 303 | 425 | 5.94e-15 | 78.6 |
MS.gene78708.t1 | MTR_1g113000 | 31.206 | 282 | 154 | 8 | 31 | 307 | 33 | 279 | 1.35e-30 | 127 |
MS.gene78708.t1 | MTR_1g113000 | 43.860 | 114 | 60 | 2 | 585 | 695 | 296 | 408 | 8.42e-20 | 94.0 |
MS.gene78708.t1 | MTR_1g113000 | 31.206 | 282 | 154 | 8 | 31 | 307 | 33 | 279 | 2.30e-30 | 126 |
MS.gene78708.t1 | MTR_1g113000 | 43.860 | 114 | 60 | 2 | 585 | 695 | 296 | 408 | 1.31e-19 | 93.2 |
MS.gene78708.t1 | MTR_1g113000 | 31.206 | 282 | 154 | 8 | 31 | 307 | 33 | 279 | 3.69e-30 | 126 |
MS.gene78708.t1 | MTR_1g113000 | 43.860 | 114 | 60 | 2 | 585 | 695 | 296 | 408 | 1.55e-19 | 93.2 |
MS.gene78708.t1 | MTR_1338s0010 | 68.493 | 73 | 22 | 1 | 113 | 184 | 36 | 108 | 3.67e-22 | 93.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78708.t1 | AT5G10940 | 68.068 | 761 | 235 | 7 | 1 | 760 | 1 | 754 | 0.0 | 1064 |
MS.gene78708.t1 | AT5G10940 | 67.759 | 763 | 237 | 7 | 1 | 760 | 1 | 757 | 0.0 | 1062 |
MS.gene78708.t1 | AT3G45620 | 34.114 | 299 | 171 | 8 | 13 | 310 | 17 | 290 | 2.27e-38 | 149 |
MS.gene78708.t1 | AT3G45620 | 43.750 | 96 | 51 | 2 | 600 | 693 | 298 | 392 | 4.47e-17 | 85.5 |
MS.gene78708.t1 | AT3G45620 | 34.915 | 295 | 165 | 9 | 35 | 327 | 73 | 342 | 3.12e-37 | 147 |
MS.gene78708.t1 | AT3G45620 | 43.750 | 96 | 51 | 2 | 600 | 693 | 332 | 426 | 5.20e-17 | 85.5 |
MS.gene78708.t1 | AT4G38480 | 29.315 | 365 | 200 | 11 | 37 | 392 | 8 | 323 | 7.77e-32 | 129 |
MS.gene78708.t1 | AT4G38480 | 48.810 | 84 | 42 | 1 | 612 | 695 | 268 | 350 | 5.27e-17 | 84.7 |
MS.gene78708.t1 | AT4G38480 | 29.315 | 365 | 200 | 11 | 37 | 392 | 41 | 356 | 1.26e-31 | 129 |
MS.gene78708.t1 | AT4G38480 | 48.810 | 84 | 42 | 1 | 612 | 695 | 301 | 383 | 5.80e-17 | 85.1 |
MS.gene78708.t1 | AT4G35140 | 31.250 | 272 | 157 | 8 | 36 | 307 | 44 | 285 | 8.54e-30 | 124 |
MS.gene78708.t1 | AT4G35140 | 48.780 | 82 | 41 | 1 | 614 | 695 | 327 | 407 | 2.21e-17 | 86.3 |
MS.gene78708.t1 | AT4G35140 | 31.250 | 272 | 157 | 8 | 36 | 307 | 44 | 285 | 1.40e-29 | 124 |
MS.gene78708.t1 | AT4G35140 | 48.780 | 82 | 41 | 1 | 614 | 695 | 327 | 407 | 5.10e-17 | 85.5 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGATGGCAGATGGTTTATT+TGG | 0.174052 | 3.2:-83940627 | MS.gene78708:CDS |
AATGGCTACAATCATATTAT+TGG | 0.188384 | 3.2:-83945240 | MS.gene78708:CDS |
ACATGCCTCAATTCCATAAT+AGG | 0.196131 | 3.2:+83945275 | None:intergenic |
GATATGAAGCAGAGGTTTAT+TGG | 0.225807 | 3.2:-83941891 | MS.gene78708:CDS |
AACAAAAGTTATCCCGTAAT+AGG | 0.237900 | 3.2:-83940229 | MS.gene78708:CDS |
GAATTCAAAAGGTTCATTAT+TGG | 0.253318 | 3.2:-83950159 | MS.gene78708:CDS |
TCTTTCAGCAACTTCAGATT+TGG | 0.271572 | 3.2:+83943882 | None:intergenic |
GGAAACTCATGCATTCTAAA+TGG | 0.278208 | 3.2:+83939627 | None:intergenic |
ACTTACTCTCCAAGCGTTAA+TGG | 0.282521 | 3.2:-83945549 | MS.gene78708:CDS |
CCGAAAATCATGTTGTCTTA+AGG | 0.300925 | 3.2:+83949478 | None:intergenic |
ACAAGCTCATCAGATGTTTC+TGG | 0.301340 | 3.2:+83949873 | None:intergenic |
ATCGGTGAATCTTTAGGTTT+GGG | 0.313382 | 3.2:+83939569 | None:intergenic |
CACTCGCAGGGTCAAGAAAT+TGG | 0.314883 | 3.2:-83949666 | MS.gene78708:CDS |
CTTACTCTCCAAGCGTTAAT+GGG | 0.318840 | 3.2:-83945548 | MS.gene78708:CDS |
CTTCATATCAATAGCTGCTT+CGG | 0.322899 | 3.2:+83941905 | None:intergenic |
CCCAACACATCACCAGTTTC+TGG | 0.324612 | 3.2:+83940269 | None:intergenic |
ATATGAAGCAGAGGTTTATT+GGG | 0.354463 | 3.2:-83941890 | MS.gene78708:CDS |
AATCGGTGAATCTTTAGGTT+TGG | 0.358671 | 3.2:+83939568 | None:intergenic |
TTTAAAGCAAGGACTTGTTT+AGG | 0.359050 | 3.2:+83947830 | None:intergenic |
CTGGCACTCCATACCACATT+GGG | 0.375249 | 3.2:+83949512 | None:intergenic |
GGGAAAACACAAAGAAGCTT+TGG | 0.378408 | 3.2:-83943938 | MS.gene78708:CDS |
TGCTGTTGCTTCCCACTCGC+TGG | 0.382906 | 3.2:-83943911 | MS.gene78708:CDS |
GGCAGGTTCGGTTATTCAAC+AGG | 0.385096 | 3.2:-83949754 | MS.gene78708:intron |
AGGGCGAGAGTGAAGGTATC+TGG | 0.386886 | 3.2:+83950941 | None:intergenic |
TGATGGCAGATGGTTTATTT+GGG | 0.402572 | 3.2:-83940626 | MS.gene78708:CDS |
TTCAACAGGTCTCGCGTAAG+TGG | 0.403404 | 3.2:-83949740 | MS.gene78708:CDS |
ACAAAAGTTATCCCGTAATA+GGG | 0.403715 | 3.2:-83940228 | MS.gene78708:CDS |
CAGCATTGAATCCCTATTAC+GGG | 0.403849 | 3.2:+83940217 | None:intergenic |
GGAGAATGTGAAGAAGGATA+TGG | 0.404468 | 3.2:-83943857 | MS.gene78708:CDS |
CTCATTTGCTCCTTGTTGGT+GGG | 0.405778 | 3.2:-83947781 | MS.gene78708:CDS |
ACAGCATTGAATCCCTATTA+CGG | 0.407538 | 3.2:+83940216 | None:intergenic |
TATTGGACCTGCACTAAAAC+AGG | 0.410617 | 3.2:-83945223 | MS.gene78708:CDS |
AAAGGTTCATTATTGGTATC+CGG | 0.412483 | 3.2:-83950152 | MS.gene78708:CDS |
GTTTCCAATGTCTTCACAAA+TGG | 0.414037 | 3.2:-83945507 | MS.gene78708:CDS |
TCTGTAGCTGGTGGTTCTGC+AGG | 0.414277 | 3.2:-83940293 | MS.gene78708:CDS |
AGACCTCATTTGCTCCTTGT+TGG | 0.424397 | 3.2:-83947785 | MS.gene78708:CDS |
TCTGATGAGCTTGTAGCCTC+TGG | 0.428757 | 3.2:-83949864 | MS.gene78708:CDS |
TCGTGCTGCACTATTGCTTA+AGG | 0.429248 | 3.2:-83945187 | MS.gene78708:intron |
CTGATGAGCTTGTAGCCTCT+GGG | 0.430082 | 3.2:-83949863 | MS.gene78708:CDS |
CATGCCTCAATTCCATAATA+GGG | 0.432767 | 3.2:+83945276 | None:intergenic |
TTCATATCAATAGCTGCTTC+GGG | 0.434684 | 3.2:+83941906 | None:intergenic |
TGATTTGAGTAGGGACATCT+TGG | 0.434899 | 3.2:-83950203 | MS.gene78708:intron |
GCTATTGCTTGGAATTCAAA+AGG | 0.436372 | 3.2:-83950170 | MS.gene78708:CDS |
TTCTGATTATGACGAGGAAA+TGG | 0.437348 | 3.2:-83943399 | MS.gene78708:CDS |
CCTGTTGCATCTTCTGTAGC+TGG | 0.440848 | 3.2:-83940305 | MS.gene78708:CDS |
CCTCATTTGCTCCTTGTTGG+TGG | 0.442952 | 3.2:-83947782 | MS.gene78708:CDS |
GTGAAGACATTGGAAACAAA+AGG | 0.443687 | 3.2:+83945513 | None:intergenic |
AAAATATGCTAAGAAGTCAT+TGG | 0.444166 | 3.2:-83945310 | MS.gene78708:CDS |
TGGGATTGATAACACGATAA+AGG | 0.444355 | 3.2:-83940426 | MS.gene78708:intron |
GAGCTTGTAGCCTCTGGGGC+TGG | 0.452286 | 3.2:-83949858 | MS.gene78708:CDS |
ATCAATGTTTGGAGCTATGC+TGG | 0.456735 | 3.2:-83949960 | MS.gene78708:CDS |
TCTTAAGGTTCCATCTTCAC+TGG | 0.461289 | 3.2:+83949493 | None:intergenic |
CGCAAGCGTAGTGATCCTTC+AGG | 0.461853 | 3.2:+83939606 | None:intergenic |
CAGCAACTTCAGATTTGGAT+GGG | 0.464824 | 3.2:+83943887 | None:intergenic |
CATGTTACATTTAGTCCTGA+TGG | 0.469413 | 3.2:-83946695 | MS.gene78708:CDS |
TGTATGTTTCCGTCGAGAAA+AGG | 0.472053 | 3.2:+83950978 | None:intergenic |
GTTGCCACAACAAAATCAAA+TGG | 0.472347 | 3.2:+83940452 | None:intergenic |
TGGTGATGTGTTGGGTGCTA+TGG | 0.474086 | 3.2:-83940261 | MS.gene78708:CDS |
TTTATTTGGGAAAAGCGAAC+TGG | 0.476711 | 3.2:-83940613 | MS.gene78708:CDS |
TTTATTGGGCACTGCAATGT+GGG | 0.483595 | 3.2:-83941876 | MS.gene78708:CDS |
CTAGAACATTGTGACACTCT+TGG | 0.484612 | 3.2:+83949420 | None:intergenic |
GTTGTGTCAATGCTATTGCT+TGG | 0.484883 | 3.2:-83950181 | MS.gene78708:CDS |
CTGATTCAAATATTCTTCAC+CGG | 0.487076 | 3.2:-83943331 | MS.gene78708:CDS |
TGTGGGGACTGATATAAAAC+AGG | 0.487794 | 3.2:-83941859 | MS.gene78708:CDS |
GGCACCTCTTGTCCTCCTGC+AGG | 0.488598 | 3.2:-83949452 | MS.gene78708:CDS |
TTGCACGTCTGTATGATAGA+AGG | 0.488823 | 3.2:-83947666 | MS.gene78708:CDS |
GCCAATGTCAGCTTGACTTA+CGG | 0.491366 | 3.2:-83947883 | MS.gene78708:intron |
GTTGCCAGCGGTAGCGATGA+TGG | 0.491901 | 3.2:-83940643 | MS.gene78708:CDS |
AGGTCTCGCGTAAGTGGGAA+TGG | 0.492402 | 3.2:-83949734 | MS.gene78708:CDS |
TAGGTTTGGGCACATTCAAA+AGG | 0.492710 | 3.2:+83939582 | None:intergenic |
GACTTCGAAACATCAGTGTC+TGG | 0.503513 | 3.2:-83943371 | MS.gene78708:CDS |
GAATATATTTGCAGTATGTC+CGG | 0.507668 | 3.2:+83949911 | None:intergenic |
TAAAGTGCTGATGGAGTAAT+GGG | 0.508030 | 3.2:+83949698 | None:intergenic |
GTATGGAGTGCCAGTGAAGA+TGG | 0.508251 | 3.2:-83949503 | MS.gene78708:CDS |
ATGGAAACCCCAATGTGGTA+TGG | 0.509468 | 3.2:-83949520 | MS.gene78708:CDS |
GGTTCTGCAGGACCAGAAAC+TGG | 0.510294 | 3.2:-83940281 | MS.gene78708:CDS |
TTGCTGAGTGGCGATGAATC+TGG | 0.510859 | 3.2:-83940577 | MS.gene78708:intron |
TCAGCAACTTCAGATTTGGA+TGG | 0.514086 | 3.2:+83943886 | None:intergenic |
AGGAGAACCTCAGATCCATC+AGG | 0.514318 | 3.2:+83946680 | None:intergenic |
ACATGAGTTAAGTGCAAACT+TGG | 0.515218 | 3.2:+83946713 | None:intergenic |
AATTCTACCCCATTAACGCT+TGG | 0.516355 | 3.2:+83945540 | None:intergenic |
AAGAGTGGAGAATGTGAAGA+AGG | 0.518345 | 3.2:-83943863 | MS.gene78708:CDS |
GCTTCTGACATGTAGTAAAG+TGG | 0.519345 | 3.2:+83944975 | None:intergenic |
AATGGTTCTAAGAGCTCAAA+GGG | 0.521850 | 3.2:+83939645 | None:intergenic |
CCAGCTACAGAAGATGCAAC+AGG | 0.527365 | 3.2:+83940305 | None:intergenic |
CATGCTCTCCGCTATAGCTC+AGG | 0.528027 | 3.2:+83946660 | None:intergenic |
ACCTCGACATCCAGAGGAAG+TGG | 0.528915 | 3.2:-83945067 | MS.gene78708:intron |
TACCCGCGTATCATCTGATC+CGG | 0.530277 | 3.2:+83950133 | None:intergenic |
ATTTGCTCCTTGTTGGTGGG+AGG | 0.536719 | 3.2:-83947778 | MS.gene78708:intron |
TTATGACGAGGAAATGGAGT+TGG | 0.536741 | 3.2:-83943393 | MS.gene78708:CDS |
GAAGATGCAACAGGAGCACT+TGG | 0.539197 | 3.2:+83940314 | None:intergenic |
AGCAAGACAAATAATGGAAG+AGG | 0.541036 | 3.2:-83943512 | MS.gene78708:CDS |
ATTTCTTGACCCTGCGAGTG+TGG | 0.544999 | 3.2:+83949669 | None:intergenic |
TGACCCTGCGAGTGTGGCAC+TGG | 0.545984 | 3.2:+83949675 | None:intergenic |
CCACCAACAAGGAGCAAATG+AGG | 0.546459 | 3.2:+83947782 | None:intergenic |
TTTACCAGTGCCACACTCGC+AGG | 0.546843 | 3.2:-83949679 | MS.gene78708:CDS |
CCAGAAACTGGTGATGTGTT+GGG | 0.549316 | 3.2:-83940269 | MS.gene78708:CDS |
TAAGAGACTGCCATGCTGCT+AGG | 0.550036 | 3.2:-83945022 | MS.gene78708:CDS |
TGCTAAGAAGTCATTGGACG+AGG | 0.553143 | 3.2:-83945304 | MS.gene78708:CDS |
CATGTCAGAAGCATTGTCTC+AGG | 0.555320 | 3.2:-83944964 | MS.gene78708:intron |
ATCTGAAGTTGCTGAAAGAG+TGG | 0.556156 | 3.2:-83943878 | MS.gene78708:CDS |
ACCAGAAACTGGTGATGTGT+TGG | 0.557320 | 3.2:-83940270 | MS.gene78708:CDS |
TAATTAACACAAGGAGGTGG+AGG | 0.557896 | 3.2:+83947607 | None:intergenic |
TCTGCCATCATCGCTACCGC+TGG | 0.558595 | 3.2:+83940639 | None:intergenic |
AATAGTGATACTTCACAAGA+TGG | 0.563306 | 3.2:-83943443 | MS.gene78708:CDS |
TATCACTATTAGCCTCTGTC+CGG | 0.564294 | 3.2:+83943456 | None:intergenic |
AATGGAGCTAAAAGATCCCT+TGG | 0.565541 | 3.2:-83947860 | MS.gene78708:CDS |
ATTTAGTCCTGATGGATCTG+AGG | 0.565686 | 3.2:-83946687 | MS.gene78708:CDS |
AAAACCATTTGTGAAGACAT+TGG | 0.566595 | 3.2:+83945503 | None:intergenic |
AGCAACTTCAGATTTGGATG+GGG | 0.566604 | 3.2:+83943888 | None:intergenic |
TACTTGATGAATGTAAATCA+TGG | 0.567455 | 3.2:-83946635 | MS.gene78708:intron |
TTGTACAGCTTGACAAGTGT+AGG | 0.567850 | 3.2:-83945341 | MS.gene78708:intron |
AGAGAAAATGCTGAAGCAAG+TGG | 0.569479 | 3.2:-83943272 | MS.gene78708:CDS |
ACTGGCACTCCATACCACAT+TGG | 0.569853 | 3.2:+83949511 | None:intergenic |
TCTTGGTGTGGAGATCCTGC+AGG | 0.570087 | 3.2:+83949437 | None:intergenic |
AAATGGTTCTAAGAGCTCAA+AGG | 0.570232 | 3.2:+83939644 | None:intergenic |
ACACGATCAGAAAGGTGCAT+TGG | 0.572900 | 3.2:+83947577 | None:intergenic |
GTAAAGTGCTGATGGAGTAA+TGG | 0.573994 | 3.2:+83949697 | None:intergenic |
GGCACCCTATTATGGAATTG+AGG | 0.576190 | 3.2:-83945280 | MS.gene78708:CDS |
AAAGCAAGGACTTGTTTAGG+AGG | 0.578216 | 3.2:+83947833 | None:intergenic |
CATTAAGTGACATTCTCTAC+CGG | 0.578864 | 3.2:-83943475 | MS.gene78708:CDS |
TGGCACTGGTAAAGTGCTGA+TGG | 0.583049 | 3.2:+83949689 | None:intergenic |
TTTGGATGGGGCCAGCGAGT+GGG | 0.587431 | 3.2:+83943900 | None:intergenic |
TGTCAGCTTGACTTACGGAA+TGG | 0.587725 | 3.2:-83947878 | MS.gene78708:intron |
AGAATGCATGAGTTTCCTGA+AGG | 0.588086 | 3.2:-83939621 | MS.gene78708:CDS |
ATTTGGATGGGGCCAGCGAG+TGG | 0.588705 | 3.2:+83943899 | None:intergenic |
TCAACAGGTCTCGCGTAAGT+GGG | 0.589372 | 3.2:-83949739 | MS.gene78708:CDS |
AACATACAGGGCGAGAGTGA+AGG | 0.592920 | 3.2:+83950934 | None:intergenic |
CTACCACCTCTAAGCTCCTG+TGG | 0.596516 | 3.2:-83947640 | MS.gene78708:CDS |
TCTATCATACAGACGTGCAA+AGG | 0.599078 | 3.2:+83947669 | None:intergenic |
AACATCAGTGTCTGGTGACG+AGG | 0.600611 | 3.2:-83943363 | MS.gene78708:CDS |
GAATGGTAGAGCTTCATACC+AGG | 0.601199 | 3.2:-83943213 | MS.gene78708:intron |
AAATGCTGAAGCAAGTGGCT+CGG | 0.603472 | 3.2:-83943267 | MS.gene78708:CDS |
AGAAAGTCTGCGAATCAAAG+AGG | 0.604255 | 3.2:+83950739 | None:intergenic |
GAATTCTACGATTCATACTC+CGG | 0.607159 | 3.2:+83943312 | None:intergenic |
AAGATGGTCAGAGATCTGAC+AGG | 0.608777 | 3.2:-83943427 | MS.gene78708:CDS |
GTTTATTGGGCACTGCAATG+TGG | 0.610985 | 3.2:-83941877 | MS.gene78708:CDS |
AAATAATTAACACAAGGAGG+TGG | 0.612689 | 3.2:+83947604 | None:intergenic |
AAGACAAATAATGGAAGAGG+TGG | 0.615272 | 3.2:-83943509 | MS.gene78708:CDS |
GAGGTTCTCCTGAGCTATAG+CGG | 0.621542 | 3.2:-83946668 | MS.gene78708:CDS |
TATCAAATTTCCTAGCAGCA+TGG | 0.625346 | 3.2:+83945012 | None:intergenic |
GCGGTAGCGATGATGGCAGA+TGG | 0.626278 | 3.2:-83940636 | MS.gene78708:CDS |
AAGGACTAACACGATCAGAA+AGG | 0.629433 | 3.2:+83947569 | None:intergenic |
GTAGTAAAGTGGTTTATATG+CGG | 0.630842 | 3.2:+83944986 | None:intergenic |
TTATTGGGCACTGCAATGTG+GGG | 0.632042 | 3.2:-83941875 | MS.gene78708:CDS |
ATATGCAGCTGGTGTGAATG+AGG | 0.632149 | 3.2:-83945607 | MS.gene78708:intron |
AGATCCTGCAGGAGGACAAG+AGG | 0.633325 | 3.2:+83949448 | None:intergenic |
GTTGCATCTTCTGTAGCTGG+TGG | 0.634469 | 3.2:-83940302 | MS.gene78708:CDS |
TTTCCACAGGAGCTTAGAGG+TGG | 0.636308 | 3.2:+83947637 | None:intergenic |
TGATGAGCTTGTAGCCTCTG+GGG | 0.636681 | 3.2:-83949862 | MS.gene78708:CDS |
TTCAGCATCTCCAGCCCCAG+AGG | 0.638233 | 3.2:+83949848 | None:intergenic |
TTACCAGTGCCACACTCGCA+GGG | 0.639153 | 3.2:-83949678 | MS.gene78708:CDS |
AATCGTAGAATTCATCGAAG+AGG | 0.640411 | 3.2:-83943302 | MS.gene78708:CDS |
CAGCTATTGATATGAAGCAG+AGG | 0.640848 | 3.2:-83941899 | MS.gene78708:CDS |
TTACTCTCCAAGCGTTAATG+GGG | 0.644125 | 3.2:-83945547 | MS.gene78708:CDS |
GCTAAGAAGTCATTGGACGA+GGG | 0.646159 | 3.2:-83945303 | MS.gene78708:CDS |
CTAAGAAGTCATTGGACGAG+GGG | 0.654412 | 3.2:-83945302 | MS.gene78708:CDS |
TGGTGTGGAGATCCTGCAGG+AGG | 0.660029 | 3.2:+83949440 | None:intergenic |
ATACTTACCTCCCACCAACA+AGG | 0.661870 | 3.2:+83947771 | None:intergenic |
CTTGTTTAGGAGGATCACCA+AGG | 0.663151 | 3.2:+83947843 | None:intergenic |
GTTTCCGTCGAGAAAAGGAG+TGG | 0.666174 | 3.2:+83950983 | None:intergenic |
ATAGGTGAATATGTTGCCAG+CGG | 0.668912 | 3.2:-83940655 | MS.gene78708:intron |
ATCCGGATCAGATGATACGC+GGG | 0.672811 | 3.2:-83950135 | MS.gene78708:intron |
TTGTTTAGGAGGATCACCAA+GGG | 0.676840 | 3.2:+83947844 | None:intergenic |
AGATGGTCAGAGATCTGACA+GGG | 0.684626 | 3.2:-83943426 | MS.gene78708:CDS |
ACATTGTGACACTCTTGGTG+TGG | 0.695571 | 3.2:+83949425 | None:intergenic |
TGGCACTCCATACCACATTG+GGG | 0.698757 | 3.2:+83949513 | None:intergenic |
TGACATTCTCTACCGGACAG+AGG | 0.700100 | 3.2:-83943468 | MS.gene78708:CDS |
TAAGAAGTCATTGGACGAGG+GGG | 0.700147 | 3.2:-83945301 | MS.gene78708:CDS |
CTAGTGCATTCAATTGACAC+CGG | 0.709757 | 3.2:-83949930 | MS.gene78708:CDS |
GGATGATTCTGATTATGACG+AGG | 0.715295 | 3.2:-83943405 | MS.gene78708:CDS |
TGAAAATGGAAACCCCAATG+TGG | 0.715815 | 3.2:-83949525 | MS.gene78708:CDS |
TATCCGGATCAGATGATACG+CGG | 0.728105 | 3.2:-83950136 | MS.gene78708:CDS |
AGACTCATGAAATTGCTGAG+TGG | 0.779389 | 3.2:-83940589 | MS.gene78708:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 83939581 | 83951012 | 83939581 | ID=MS.gene78708 |
chr3.2 | mRNA | 83939581 | 83951012 | 83939581 | ID=MS.gene78708.t1;Parent=MS.gene78708 |
chr3.2 | exon | 83950941 | 83951012 | 83950941 | ID=MS.gene78708.t1.exon1;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83950941 | 83951012 | 83950941 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83950721 | 83950792 | 83950721 | ID=MS.gene78708.t1.exon2;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83950721 | 83950792 | 83950721 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83950136 | 83950213 | 83950136 | ID=MS.gene78708.t1.exon3;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83950136 | 83950213 | 83950136 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83949848 | 83949982 | 83949848 | ID=MS.gene78708.t1.exon4;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83949848 | 83949982 | 83949848 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83949664 | 83949771 | 83949664 | ID=MS.gene78708.t1.exon5;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83949664 | 83949771 | 83949664 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83949421 | 83949549 | 83949421 | ID=MS.gene78708.t1.exon6;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83949421 | 83949549 | 83949421 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83947779 | 83947894 | 83947779 | ID=MS.gene78708.t1.exon7;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83947779 | 83947894 | 83947779 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83947579 | 83947696 | 83947579 | ID=MS.gene78708.t1.exon8;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83947579 | 83947696 | 83947579 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83946636 | 83946741 | 83946636 | ID=MS.gene78708.t1.exon9;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83946636 | 83946741 | 83946636 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83945476 | 83945621 | 83945476 | ID=MS.gene78708.t1.exon10;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83945476 | 83945621 | 83945476 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83945188 | 83945355 | 83945188 | ID=MS.gene78708.t1.exon11;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83945188 | 83945355 | 83945188 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83944965 | 83945075 | 83944965 | ID=MS.gene78708.t1.exon12;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83944965 | 83945075 | 83944965 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83943851 | 83943962 | 83943851 | ID=MS.gene78708.t1.exon13;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83943851 | 83943962 | 83943851 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83943214 | 83943551 | 83943214 | ID=MS.gene78708.t1.exon14;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83943214 | 83943551 | 83943214 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83941838 | 83941928 | 83941838 | ID=MS.gene78708.t1.exon15;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83941838 | 83941928 | 83941838 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83940578 | 83940673 | 83940578 | ID=MS.gene78708.t1.exon16;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83940578 | 83940673 | 83940578 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83940427 | 83940497 | 83940427 | ID=MS.gene78708.t1.exon17;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83940427 | 83940497 | 83940427 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83940218 | 83940345 | 83940218 | ID=MS.gene78708.t1.exon18;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83940218 | 83940345 | 83940218 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
chr3.2 | exon | 83939581 | 83939668 | 83939581 | ID=MS.gene78708.t1.exon19;Parent=MS.gene78708.t1 |
chr3.2 | CDS | 83939581 | 83939668 | 83939581 | ID=cds.MS.gene78708.t1;Parent=MS.gene78708.t1 |
Gene Sequence |
Protein sequence |