Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78738.t1 | XP_013442388.2 | 98.5 | 399 | 5 | 1 | 1 | 399 | 1 | 398 | 2.30E-198 | 701.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78738.t1 | Q56YJ8 | 57.4 | 399 | 121 | 9 | 43 | 399 | 11 | 402 | 9.0e-90 | 332.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78738.t1 | A0A396G9I0 | 98.5 | 399 | 5 | 1 | 1 | 399 | 1 | 398 | 1.7e-198 | 701.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene78738.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene78738 | 0.800349 | 1.50E-48 | -1.69E-46 |
| MS.gene051941 | MS.gene78738 | 0.825085 | 5.68E-54 | -1.69E-46 |
| MS.gene052870 | MS.gene78738 | 0.846133 | 2.63E-59 | -1.69E-46 |
| MS.gene052872 | MS.gene78738 | 0.835831 | 1.33E-56 | -1.69E-46 |
| MS.gene056611 | MS.gene78738 | 0.814022 | 1.90E-51 | -1.69E-46 |
| MS.gene056897 | MS.gene78738 | 0.80695 | 6.41E-50 | -1.69E-46 |
| MS.gene057019 | MS.gene78738 | 0.812052 | 5.15E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene78738 | 0.812661 | 3.79E-51 | -1.69E-46 |
| MS.gene059129 | MS.gene78738 | 0.817898 | 2.60E-52 | -1.69E-46 |
| MS.gene059305 | MS.gene78738 | 0.801059 | 1.08E-48 | -1.69E-46 |
| MS.gene059674 | MS.gene78738 | 0.830853 | 2.32E-55 | -1.69E-46 |
| MS.gene060832 | MS.gene78738 | 0.802233 | 6.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78738.t1 | MTR_0194s0050 | 98.711 | 388 | 4 | 1 | 12 | 399 | 1 | 387 | 0.0 | 788 |
| MS.gene78738.t1 | MTR_3g099620 | 46.222 | 225 | 98 | 5 | 177 | 390 | 97 | 309 | 1.23e-54 | 183 |
| MS.gene78738.t1 | MTR_1g082480 | 47.087 | 206 | 104 | 2 | 189 | 393 | 129 | 330 | 1.04e-52 | 179 |
| MS.gene78738.t1 | MTR_8g066770 | 41.241 | 274 | 122 | 7 | 151 | 399 | 50 | 309 | 9.55e-52 | 176 |
| MS.gene78738.t1 | MTR_8g024210 | 53.555 | 211 | 79 | 4 | 185 | 394 | 170 | 362 | 1.77e-51 | 176 |
| MS.gene78738.t1 | MTR_7g113830 | 45.175 | 228 | 106 | 6 | 178 | 399 | 98 | 312 | 3.17e-51 | 174 |
| MS.gene78738.t1 | MTR_1g082480 | 46.667 | 195 | 100 | 1 | 189 | 383 | 129 | 319 | 1.59e-48 | 168 |
| MS.gene78738.t1 | MTR_3g090850 | 38.434 | 281 | 128 | 8 | 153 | 388 | 46 | 326 | 6.49e-48 | 166 |
| MS.gene78738.t1 | MTR_2g022280 | 44.388 | 196 | 99 | 2 | 196 | 391 | 1 | 186 | 9.07e-48 | 161 |
| MS.gene78738.t1 | MTR_5g064950 | 43.981 | 216 | 112 | 6 | 177 | 389 | 79 | 288 | 6.44e-47 | 162 |
| MS.gene78738.t1 | MTR_1g028470 | 38.053 | 226 | 129 | 1 | 174 | 388 | 65 | 290 | 1.94e-46 | 161 |
| MS.gene78738.t1 | MTR_5g064950 | 45.685 | 197 | 99 | 5 | 177 | 371 | 79 | 269 | 2.61e-44 | 156 |
| MS.gene78738.t1 | MTR_8g067280 | 26.957 | 230 | 135 | 8 | 171 | 395 | 439 | 640 | 2.29e-15 | 78.2 |
| MS.gene78738.t1 | MTR_5g030430 | 26.291 | 213 | 128 | 6 | 171 | 377 | 470 | 659 | 6.56e-14 | 73.9 |
| MS.gene78738.t1 | MTR_4g094762 | 24.500 | 200 | 134 | 3 | 198 | 395 | 293 | 477 | 1.48e-12 | 69.3 |
| MS.gene78738.t1 | MTR_5g014560 | 24.211 | 190 | 120 | 3 | 199 | 387 | 133 | 299 | 6.21e-12 | 66.2 |
| MS.gene78738.t1 | MTR_1g072320 | 28.846 | 156 | 94 | 5 | 198 | 352 | 471 | 610 | 8.81e-12 | 67.4 |
| MS.gene78738.t1 | MTR_3g498695 | 27.668 | 253 | 137 | 11 | 119 | 368 | 239 | 448 | 2.03e-11 | 65.9 |
| MS.gene78738.t1 | MTR_3g498695 | 27.668 | 253 | 137 | 11 | 119 | 368 | 239 | 448 | 2.14e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78738.t1 | AT3G24140 | 59.901 | 404 | 103 | 12 | 43 | 399 | 11 | 402 | 2.86e-139 | 403 |
| MS.gene78738.t1 | AT3G24140 | 59.653 | 404 | 104 | 12 | 43 | 399 | 11 | 402 | 1.47e-138 | 402 |
| MS.gene78738.t1 | AT3G06120 | 43.564 | 202 | 101 | 3 | 196 | 393 | 1 | 193 | 3.30e-48 | 163 |
| MS.gene78738.t1 | AT1G22490 | 43.458 | 214 | 107 | 4 | 185 | 397 | 104 | 304 | 1.16e-47 | 165 |
| MS.gene78738.t1 | AT1G72210 | 42.922 | 219 | 106 | 5 | 186 | 399 | 115 | 319 | 3.02e-47 | 164 |
| MS.gene78738.t1 | AT1G22490 | 45.989 | 187 | 88 | 3 | 185 | 371 | 104 | 277 | 1.66e-44 | 157 |
| MS.gene78738.t1 | AT1G72210 | 43.684 | 190 | 89 | 4 | 186 | 371 | 115 | 290 | 1.36e-42 | 151 |
| MS.gene78738.t1 | AT2G46810 | 41.176 | 204 | 98 | 3 | 189 | 390 | 114 | 297 | 1.01e-40 | 146 |
| MS.gene78738.t1 | AT4G01460 | 40.758 | 211 | 114 | 4 | 186 | 395 | 105 | 305 | 6.24e-40 | 144 |
| MS.gene78738.t1 | AT4G01460 | 40.758 | 211 | 114 | 4 | 186 | 395 | 105 | 305 | 6.24e-40 | 144 |
| MS.gene78738.t1 | AT2G46810 | 41.176 | 204 | 98 | 3 | 189 | 390 | 174 | 357 | 8.13e-40 | 145 |
| MS.gene78738.t1 | AT2G46810 | 41.176 | 204 | 98 | 3 | 189 | 390 | 186 | 369 | 9.42e-40 | 145 |
| MS.gene78738.t1 | AT5G46690 | 41.964 | 224 | 114 | 4 | 185 | 393 | 77 | 299 | 1.74e-38 | 141 |
| MS.gene78738.t1 | AT2G46810 | 43.548 | 186 | 84 | 2 | 189 | 373 | 114 | 279 | 1.82e-38 | 141 |
| MS.gene78738.t1 | AT3G61950 | 40.580 | 207 | 100 | 4 | 186 | 390 | 117 | 302 | 6.01e-38 | 139 |
| MS.gene78738.t1 | AT3G61950 | 42.487 | 193 | 89 | 3 | 186 | 377 | 117 | 288 | 9.94e-38 | 138 |
| MS.gene78738.t1 | AT3G61950 | 40.580 | 207 | 100 | 4 | 186 | 390 | 168 | 353 | 1.98e-37 | 139 |
| MS.gene78738.t1 | AT3G61950 | 42.487 | 193 | 89 | 3 | 186 | 377 | 168 | 339 | 3.98e-37 | 138 |
| MS.gene78738.t1 | AT5G46690 | 43.284 | 201 | 99 | 3 | 185 | 371 | 77 | 276 | 2.98e-35 | 131 |
| MS.gene78738.t1 | AT5G65320 | 36.321 | 212 | 122 | 4 | 186 | 394 | 92 | 293 | 2.65e-30 | 118 |
| MS.gene78738.t1 | AT5G65320 | 38.503 | 187 | 104 | 3 | 186 | 371 | 92 | 268 | 5.21e-27 | 108 |
| MS.gene78738.t1 | AT5G53210 | 65.714 | 70 | 24 | 0 | 194 | 263 | 100 | 169 | 3.07e-25 | 105 |
| MS.gene78738.t1 | AT5G53210 | 50.000 | 74 | 37 | 0 | 301 | 374 | 274 | 347 | 3.95e-15 | 76.6 |
| MS.gene78738.t1 | AT5G53210 | 65.714 | 70 | 24 | 0 | 194 | 263 | 100 | 169 | 4.76e-25 | 105 |
| MS.gene78738.t1 | AT5G53210 | 46.591 | 88 | 47 | 0 | 301 | 388 | 274 | 361 | 1.93e-18 | 86.7 |
| MS.gene78738.t1 | AT4G17880 | 27.354 | 223 | 126 | 7 | 154 | 373 | 380 | 569 | 3.58e-15 | 77.8 |
| MS.gene78738.t1 | AT1G32640 | 25.714 | 245 | 128 | 7 | 138 | 372 | 405 | 605 | 1.01e-14 | 76.3 |
| MS.gene78738.t1 | AT4G37850 | 25.573 | 262 | 161 | 6 | 138 | 391 | 90 | 325 | 7.87e-13 | 69.3 |
| MS.gene78738.t1 | AT4G37850 | 25.573 | 262 | 161 | 6 | 138 | 391 | 90 | 325 | 7.87e-13 | 69.3 |
| MS.gene78738.t1 | AT3G61950 | 66.667 | 42 | 14 | 0 | 186 | 227 | 168 | 209 | 1.28e-12 | 67.0 |
| MS.gene78738.t1 | AT3G61950 | 66.667 | 42 | 14 | 0 | 186 | 227 | 168 | 209 | 1.28e-12 | 67.0 |
| MS.gene78738.t1 | AT5G46760 | 24.898 | 245 | 150 | 7 | 133 | 373 | 358 | 572 | 3.86e-12 | 68.2 |
Find 76 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGATTCTTCGCGGTTTA+AGG | 0.091676 | 5.4:+42208473 | None:intergenic |
| GTGATGCAGTTTGCAGATTT+TGG | 0.187925 | 5.4:-42208507 | MS.gene78738:CDS |
| GGTGATCAAGCTTCTATAAT+TGG | 0.199677 | 5.4:-42207602 | MS.gene78738:CDS |
| TCACTTGTCTTAACAGTTCT+TGG | 0.201116 | 5.4:+42208207 | None:intergenic |
| CACCACTCAACATCAAATTT+TGG | 0.284583 | 5.4:+42208394 | None:intergenic |
| CCTCCTGAAGTTTGTGTTTG+AGG | 0.310661 | 5.4:+42208573 | None:intergenic |
| TGGTCATTTGGTAAAGTAAC+TGG | 0.316468 | 5.4:+42207434 | None:intergenic |
| TCGCGGTTTAAGGCTAATTT+AGG | 0.318430 | 5.4:+42208483 | None:intergenic |
| ACTAGCTTCATCTGGTCATT+TGG | 0.371823 | 5.4:+42207422 | None:intergenic |
| AAGCTAGTTGAGATGGAAAC+TGG | 0.382861 | 5.4:-42207407 | MS.gene78738:CDS |
| GTGATCAAGCTTCTATAATT+GGG | 0.386419 | 5.4:-42207601 | MS.gene78738:CDS |
| AACCAGGCATGAGGGATCTA+AGG | 0.393915 | 5.4:+42208106 | None:intergenic |
| GATGTAGAAGTGAAACTTCT+AGG | 0.406812 | 5.4:-42207344 | MS.gene78738:CDS |
| TATAGAGTTTGTGAGGGAAT+TGG | 0.411761 | 5.4:-42207573 | MS.gene78738:CDS |
| GCCTTAAACCGCGAAGAATC+AGG | 0.418841 | 5.4:-42208474 | MS.gene78738:CDS |
| CCATCTCAACTAGCTTCATC+TGG | 0.419409 | 5.4:+42207414 | None:intergenic |
| AAGCACAATCAAAACAAGTT+GGG | 0.436877 | 5.4:-42207499 | MS.gene78738:CDS |
| CAAAAGAGAAGGAGGCTACT+AGG | 0.441278 | 5.4:-42207524 | MS.gene78738:CDS |
| GGAGAAAGATAACGACTATT+CGG | 0.442650 | 5.4:-42208905 | MS.gene78738:intron |
| TCTATCTTATTGGTTAAGAC+AGG | 0.457469 | 5.4:+42208420 | None:intergenic |
| TTGAGTGGTGGTGATGGGTT+AGG | 0.458608 | 5.4:-42208381 | MS.gene78738:CDS |
| TGCTGAGAGTAAGTCATGTT+TGG | 0.461833 | 5.4:-42207369 | MS.gene78738:CDS |
| TATCGAGTTGGCGAAACATC+GGG | 0.463450 | 5.4:-42208630 | MS.gene78738:CDS |
| GTCCTTAGATCCCTCATGCC+TGG | 0.466194 | 5.4:-42208108 | MS.gene78738:CDS |
| GGAAACTTGAGAAAATAAAC+CGG | 0.469347 | 5.4:+42208441 | None:intergenic |
| GAAGCACAATCAAAACAAGT+TGG | 0.486078 | 5.4:-42207500 | MS.gene78738:CDS |
| ATTCTCTCAAGGAGAAGGCC+TGG | 0.493901 | 5.4:-42207302 | MS.gene78738:CDS |
| AAGAACTGTCTGTTCAATAG+TGG | 0.499927 | 5.4:+42207214 | None:intergenic |
| TGTGTTGAAGCTTGGTGGCA+TGG | 0.500253 | 5.4:+42208719 | None:intergenic |
| TTGATGTTGAGTGGTGGTGA+TGG | 0.503048 | 5.4:-42208387 | MS.gene78738:CDS |
| CCAGATGAAGCTAGTTGAGA+TGG | 0.511789 | 5.4:-42207414 | MS.gene78738:CDS |
| GCCTGGTTCATACGTGCAAA+GGG | 0.513019 | 5.4:-42208091 | MS.gene78738:intron |
| CTGTTCAATAGTGGTGATGT+TGG | 0.513963 | 5.4:+42207223 | None:intergenic |
| GTGTTGAAGCTTGGTGGCAT+GGG | 0.524729 | 5.4:+42208720 | None:intergenic |
| GTATCGAGTTGGCGAAACAT+CGG | 0.525109 | 5.4:-42208631 | MS.gene78738:CDS |
| TGATGTTGAGTGGTGGTGAT+GGG | 0.525956 | 5.4:-42208386 | MS.gene78738:CDS |
| TGCAAGAGAACAACAAGAAG+AGG | 0.529798 | 5.4:-42208236 | MS.gene78738:CDS |
| ATGGTCTTGATCAACTGTCC+AGG | 0.530534 | 5.4:+42207284 | None:intergenic |
| TGCCTGGTTCATACGTGCAA+AGG | 0.533937 | 5.4:-42208092 | MS.gene78738:CDS |
| AGCTAGTGATACAAGGTTCA+CGG | 0.534009 | 5.4:-42206937 | MS.gene78738:CDS |
| TTAAAATTCTCTCAAGGAGA+AGG | 0.534852 | 5.4:-42207307 | MS.gene78738:CDS |
| CATATCTTCAAGAGCAGCAA+TGG | 0.547350 | 5.4:+42207265 | None:intergenic |
| TCTTTATTCATTCAATGTCA+AGG | 0.550164 | 5.4:-42207195 | MS.gene78738:intron |
| ACCCTTTGCACGTATGAACC+AGG | 0.550812 | 5.4:+42208090 | None:intergenic |
| TTGAAGCTTGGTGGCATGGG+TGG | 0.555219 | 5.4:+42208723 | None:intergenic |
| CTTCGATACCTGATTCTTCG+CGG | 0.569325 | 5.4:+42208466 | None:intergenic |
| GTCTAGAATCACAAAAGAGA+AGG | 0.576264 | 5.4:-42207535 | MS.gene78738:CDS |
| AGTTTCTGACGAGAACAACT+CGG | 0.576812 | 5.4:-42208283 | MS.gene78738:CDS |
| ATGCCTCAAACACAAACTTC+AGG | 0.576898 | 5.4:-42208576 | MS.gene78738:CDS |
| TAGTGGTGATGTTGGTGTGA+AGG | 0.588630 | 5.4:+42207231 | None:intergenic |
| TCAAGTGTGTTGAAGCTTGG+TGG | 0.589540 | 5.4:+42208714 | None:intergenic |
| TGACTCACATAGCTGTTGAA+AGG | 0.591781 | 5.4:-42208164 | MS.gene78738:CDS |
| AGCACAATCAAAACAAGTTG+GGG | 0.596948 | 5.4:-42207498 | MS.gene78738:CDS |
| TGAAAACAACAACGGAATGG+TGG | 0.599929 | 5.4:-42208607 | MS.gene78738:CDS |
| TCCAGGTAGCTAGTGATACA+AGG | 0.601551 | 5.4:-42206944 | MS.gene78738:intron |
| GCACGTATGAACCAGGCATG+AGG | 0.603673 | 5.4:+42208097 | None:intergenic |
| CAATGATTAAAATTCTCTCA+AGG | 0.606240 | 5.4:-42207313 | MS.gene78738:CDS |
| ATCAAGCTTCTATAATTGGG+GGG | 0.607172 | 5.4:-42207598 | MS.gene78738:CDS |
| CACGTATGAACCAGGCATGA+GGG | 0.608646 | 5.4:+42208098 | None:intergenic |
| TAGAATCACAAAAGAGAAGG+AGG | 0.611862 | 5.4:-42207532 | MS.gene78738:CDS |
| GACCAAAATTTGATGTTGAG+TGG | 0.615025 | 5.4:-42208396 | MS.gene78738:CDS |
| TGATCAAGCTTCTATAATTG+GGG | 0.615729 | 5.4:-42207600 | MS.gene78738:CDS |
| GAGGTTCAAATTGACAAGCG+TGG | 0.615809 | 5.4:-42208346 | MS.gene78738:CDS |
| TAATCAAGTGTGTTGAAGCT+TGG | 0.616529 | 5.4:+42208711 | None:intergenic |
| TAGCTGTTGAAAGGAATCGA+AGG | 0.623409 | 5.4:-42208155 | MS.gene78738:CDS |
| GGGTGAAAACAACAACGGAA+TGG | 0.626152 | 5.4:-42208610 | MS.gene78738:CDS |
| AAAACTTAGTATCTGCTGAA+CGG | 0.628856 | 5.4:+42206896 | None:intergenic |
| AGAATCAGGTATCGAAGACC+CGG | 0.632243 | 5.4:-42208460 | MS.gene78738:CDS |
| GATCAAGCTTCTATAATTGG+GGG | 0.640085 | 5.4:-42207599 | MS.gene78738:CDS |
| CCTCAAACACAAACTTCAGG+AGG | 0.642336 | 5.4:-42208573 | MS.gene78738:CDS |
| TCAAGCTTCTATAATTGGGG+GGG | 0.643949 | 5.4:-42207597 | MS.gene78738:CDS |
| GAAACTTGAGAAAATAAACC+GGG | 0.657788 | 5.4:+42208442 | None:intergenic |
| CAAAATTTGATGTTGAGTGG+TGG | 0.660663 | 5.4:-42208393 | MS.gene78738:CDS |
| GTTCAAATTGACAAGCGTGG+AGG | 0.694433 | 5.4:-42208343 | MS.gene78738:CDS |
| GGTTAGGAGAAAATGACGAG+AGG | 0.716694 | 5.4:-42208365 | MS.gene78738:CDS |
| ACATCGGGTGAAAACAACAA+CGG | 0.729217 | 5.4:-42208615 | MS.gene78738:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATACAAAATATTTGAG+TGG | + | chr5.4:42206954-42206973 | None:intergenic | 15.0% |
| !!! | GTTTTTGATTTTACAATATA+GGG | - | chr5.4:42208156-42208175 | MS.gene78738:CDS | 15.0% |
| !!! | TAAATTTTAGAGAACAATTA+CGG | + | chr5.4:42208039-42208058 | None:intergenic | 15.0% |
| !!! | TGTTTTTGATTTTACAATAT+AGG | - | chr5.4:42208155-42208174 | MS.gene78738:CDS | 15.0% |
| !! | CAAACATAAACTAAAATTTG+AGG | - | chr5.4:42208762-42208781 | MS.gene78738:intron | 20.0% |
| !!! | ATACTTGTGATTTTATTAGA+TGG | - | chr5.4:42208714-42208733 | MS.gene78738:CDS | 20.0% |
| !!! | GTAACAATAATTTGAAACTT+TGG | + | chr5.4:42208017-42208036 | None:intergenic | 20.0% |
| ! | AAAATTTGAGCAAAACAACA+TGG | + | chr5.4:42207021-42207040 | None:intergenic | 25.0% |
| ! | ACAAAGACATAAAAAAGACA+CGG | + | chr5.4:42206929-42206948 | None:intergenic | 25.0% |
| ! | ATTATCTCATAAGATGTGAA+TGG | + | chr5.4:42208673-42208692 | None:intergenic | 25.0% |
| ! | ATTGCACCAAAATTAAACAA+TGG | - | chr5.4:42208077-42208096 | MS.gene78738:intron | 25.0% |
| ! | CAATGATTAAAATTCTCTCA+AGG | - | chr5.4:42208466-42208485 | MS.gene78738:CDS | 25.0% |
| ! | TCTTTATTCATTCAATGTCA+AGG | - | chr5.4:42208584-42208603 | MS.gene78738:CDS | 25.0% |
| !!! | ATTTTGGTCTTCTATCTTAT+TGG | + | chr5.4:42207372-42207391 | None:intergenic | 25.0% |
| !!! | CTCTAACCATTGTTTAATTT+TGG | + | chr5.4:42208086-42208105 | None:intergenic | 25.0% |
| AAAACTTAGTATCTGCTGAA+CGG | + | chr5.4:42208886-42208905 | None:intergenic | 30.0% | |
| AAACAACATGGTGATATATG+AGG | + | chr5.4:42207009-42207028 | None:intergenic | 30.0% | |
| AAAGTAACTGGAAAAAATGG+AGG | + | chr5.4:42208336-42208355 | None:intergenic | 30.0% | |
| AAGCACAATCAAAACAAGTT+GGG | - | chr5.4:42208280-42208299 | MS.gene78738:CDS | 30.0% | |
| ATGTTATAGCTGCTGAAATT+TGG | - | chr5.4:42207747-42207766 | MS.gene78738:intron | 30.0% | |
| CTGATACCATGTTGAAATTT+GGG | + | chr5.4:42207820-42207839 | None:intergenic | 30.0% | |
| GAAACTTGAGAAAATAAACC+GGG | + | chr5.4:42207340-42207359 | None:intergenic | 30.0% | |
| GGAAACTTGAGAAAATAAAC+CGG | + | chr5.4:42207341-42207360 | None:intergenic | 30.0% | |
| GGTAAAGTAACTGGAAAAAA+TGG | + | chr5.4:42208339-42208358 | None:intergenic | 30.0% | |
| GTGATCAAGCTTCTATAATT+GGG | - | chr5.4:42208178-42208197 | MS.gene78738:CDS | 30.0% | |
| TCTGATACCATGTTGAAATT+TGG | + | chr5.4:42207821-42207840 | None:intergenic | 30.0% | |
| TGATACCATGTTGAAATTTG+GGG | + | chr5.4:42207819-42207838 | None:intergenic | 30.0% | |
| TGATCAAGCTTCTATAATTG+GGG | - | chr5.4:42208179-42208198 | MS.gene78738:CDS | 30.0% | |
| TGTTATAGCTGCTGAAATTT+GGG | - | chr5.4:42207748-42207767 | MS.gene78738:intron | 30.0% | |
| TTAAAATTCTCTCAAGGAGA+AGG | - | chr5.4:42208472-42208491 | MS.gene78738:CDS | 30.0% | |
| ! | CTCAAATTTTGAATCTTTGC+AGG | - | chr5.4:42207031-42207050 | MS.gene78738:intron | 30.0% |
| ! | TCTATCTTATTGGTTAAGAC+AGG | + | chr5.4:42207362-42207381 | None:intergenic | 30.0% |
| AACTGTGTCCTTGATTTCTA+AGG | + | chr5.4:42207975-42207994 | None:intergenic | 35.0% | |
| AAGAACTGTCTGTTCAATAG+TGG | + | chr5.4:42208568-42208587 | None:intergenic | 35.0% | |
| AGCACAATCAAAACAAGTTG+GGG | - | chr5.4:42208281-42208300 | MS.gene78738:CDS | 35.0% | |
| ATCAAGCTTCTATAATTGGG+GGG | - | chr5.4:42208181-42208200 | MS.gene78738:CDS | 35.0% | |
| CAAAATTTGATGTTGAGTGG+TGG | - | chr5.4:42207386-42207405 | MS.gene78738:CDS | 35.0% | |
| GAAGCACAATCAAAACAAGT+TGG | - | chr5.4:42208279-42208298 | MS.gene78738:CDS | 35.0% | |
| GACCAAAATTTGATGTTGAG+TGG | - | chr5.4:42207383-42207402 | MS.gene78738:CDS | 35.0% | |
| GATCAAGCTTCTATAATTGG+GGG | - | chr5.4:42208180-42208199 | MS.gene78738:CDS | 35.0% | |
| GATGTAGAAGTGAAACTTCT+AGG | - | chr5.4:42208435-42208454 | MS.gene78738:CDS | 35.0% | |
| GGAGAAAGATAACGACTATT+CGG | - | chr5.4:42206874-42206893 | MS.gene78738:CDS | 35.0% | |
| GGTGATCAAGCTTCTATAAT+TGG | - | chr5.4:42208177-42208196 | MS.gene78738:CDS | 35.0% | |
| GTTATAGCTGCTGAAATTTG+GGG | - | chr5.4:42207749-42207768 | MS.gene78738:intron | 35.0% | |
| TAATCAAGTGTGTTGAAGCT+TGG | + | chr5.4:42207071-42207090 | None:intergenic | 35.0% | |
| TAGAATCACAAAAGAGAAGG+AGG | - | chr5.4:42208247-42208266 | MS.gene78738:CDS | 35.0% | |
| TATAGAGTTTGTGAGGGAAT+TGG | - | chr5.4:42208206-42208225 | MS.gene78738:CDS | 35.0% | |
| TCACTTGTCTTAACAGTTCT+TGG | + | chr5.4:42207575-42207594 | None:intergenic | 35.0% | |
| TGGTCATTTGGTAAAGTAAC+TGG | + | chr5.4:42208348-42208367 | None:intergenic | 35.0% | |
| ! | CACCACTCAACATCAAATTT+TGG | + | chr5.4:42207388-42207407 | None:intergenic | 35.0% |
| ! | CGTATTGTTGTTGTTGTTGT+TGG | + | chr5.4:42207115-42207134 | None:intergenic | 35.0% |
| ! | GTCTAGAATCACAAAAGAGA+AGG | - | chr5.4:42208244-42208263 | MS.gene78738:CDS | 35.0% |
| !!! | GTATTTTTTGTGATGTGTCC+AGG | - | chr5.4:42208818-42208837 | MS.gene78738:intron | 35.0% |
| AAGCTAGTTGAGATGGAAAC+TGG | - | chr5.4:42208372-42208391 | MS.gene78738:CDS | 40.0% | |
| ACATCGGGTGAAAACAACAA+CGG | - | chr5.4:42207164-42207183 | MS.gene78738:intron | 40.0% | |
| AGCTAGTGATACAAGGTTCA+CGG | - | chr5.4:42208842-42208861 | MS.gene78738:intron | 40.0% | |
| AGTTTCTGACGAGAACAACT+CGG | - | chr5.4:42207496-42207515 | MS.gene78738:CDS | 40.0% | |
| ATGCCTCAAACACAAACTTC+AGG | - | chr5.4:42207203-42207222 | MS.gene78738:CDS | 40.0% | |
| CATATCTTCAAGAGCAGCAA+TGG | + | chr5.4:42208517-42208536 | None:intergenic | 40.0% | |
| CTAACTCATCCTTACAAAGC+TGG | + | chr5.4:42207795-42207814 | None:intergenic | 40.0% | |
| TAGCTGTTGAAAGGAATCGA+AGG | - | chr5.4:42207624-42207643 | MS.gene78738:intron | 40.0% | |
| TCAAGCTTCTATAATTGGGG+GGG | - | chr5.4:42208182-42208201 | MS.gene78738:CDS | 40.0% | |
| TCATCCTTACAAAGCTGGTT+TGG | + | chr5.4:42207790-42207809 | None:intergenic | 40.0% | |
| TCCTGTCTCCTTAGAAATCA+AGG | - | chr5.4:42207964-42207983 | MS.gene78738:intron | 40.0% | |
| TGAAAACAACAACGGAATGG+TGG | - | chr5.4:42207172-42207191 | MS.gene78738:intron | 40.0% | |
| TGACTCACATAGCTGTTGAA+AGG | - | chr5.4:42207615-42207634 | MS.gene78738:intron | 40.0% | |
| TGCAAGAGAACAACAAGAAG+AGG | - | chr5.4:42207543-42207562 | MS.gene78738:CDS | 40.0% | |
| TGCTGAGAGTAAGTCATGTT+TGG | - | chr5.4:42208410-42208429 | MS.gene78738:CDS | 40.0% | |
| TGGTATCAGAGCGTGATTAA+CGG | - | chr5.4:42207831-42207850 | MS.gene78738:intron | 40.0% | |
| TTAGGCCCCAAATTTCAACA+TGG | - | chr5.4:42207811-42207830 | MS.gene78738:intron | 40.0% | |
| ! | ACTAGCTTCATCTGGTCATT+TGG | + | chr5.4:42208360-42208379 | None:intergenic | 40.0% |
| ! | CAAACTTCAGGAGGCTTTTA+TGG | - | chr5.4:42207215-42207234 | MS.gene78738:CDS | 40.0% |
| ! | CAGCTTTGTAAGGATGAGTT+AGG | - | chr5.4:42207793-42207812 | MS.gene78738:intron | 40.0% |
| ! | CTGTTCAATAGTGGTGATGT+TGG | + | chr5.4:42208559-42208578 | None:intergenic | 40.0% |
| ! | GTGATGCAGTTTGCAGATTT+TGG | - | chr5.4:42207272-42207291 | MS.gene78738:CDS | 40.0% |
| ! | TCCTTGATTTCTAAGGAGAC+AGG | + | chr5.4:42207968-42207987 | None:intergenic | 40.0% |
| ! | TCGCGGTTTAAGGCTAATTT+AGG | + | chr5.4:42207299-42207318 | None:intergenic | 40.0% |
| !!! | CAGCTTTTGAAGTATCGAGT+TGG | - | chr5.4:42207137-42207156 | MS.gene78738:intron | 40.0% |
| ACCTGATTCTTCGCGGTTTA+AGG | + | chr5.4:42207309-42207328 | None:intergenic | 45.0% | |
| ACCTTGTATCACTAGCTACC+TGG | + | chr5.4:42208839-42208858 | None:intergenic | 45.0% | |
| CAAAAGAGAAGGAGGCTACT+AGG | - | chr5.4:42208255-42208274 | MS.gene78738:CDS | 45.0% | |
| CCAGATGAAGCTAGTTGAGA+TGG | - | chr5.4:42208365-42208384 | MS.gene78738:CDS | 45.0% | |
| CCTCAAACACAAACTTCAGG+AGG | - | chr5.4:42207206-42207225 | MS.gene78738:CDS | 45.0% | |
| CCTCCTGAAGTTTGTGTTTG+AGG | + | chr5.4:42207209-42207228 | None:intergenic | 45.0% | |
| CTTCGATACCTGATTCTTCG+CGG | + | chr5.4:42207316-42207335 | None:intergenic | 45.0% | |
| GAGGTTCAAATTGACAAGCG+TGG | - | chr5.4:42207433-42207452 | MS.gene78738:CDS | 45.0% | |
| GGGTGAAAACAACAACGGAA+TGG | - | chr5.4:42207169-42207188 | MS.gene78738:intron | 45.0% | |
| GGTTAGGAGAAAATGACGAG+AGG | - | chr5.4:42207414-42207433 | MS.gene78738:CDS | 45.0% | |
| GTTCAAATTGACAAGCGTGG+AGG | - | chr5.4:42207436-42207455 | MS.gene78738:CDS | 45.0% | |
| TCAAGTGTGTTGAAGCTTGG+TGG | + | chr5.4:42207068-42207087 | None:intergenic | 45.0% | |
| TCCAGGTAGCTAGTGATACA+AGG | - | chr5.4:42208835-42208854 | MS.gene78738:intron | 45.0% | |
| ! | ATGGTCTTGATCAACTGTCC+AGG | + | chr5.4:42208498-42208517 | None:intergenic | 45.0% |
| ! | CCATCTCAACTAGCTTCATC+TGG | + | chr5.4:42208368-42208387 | None:intergenic | 45.0% |
| ! | CTCACCAAACCAGCTTTGTA+AGG | - | chr5.4:42207783-42207802 | MS.gene78738:intron | 45.0% |
| ! | TAGTGGTGATGTTGGTGTGA+AGG | + | chr5.4:42208551-42208570 | None:intergenic | 45.0% |
| ! | TCCTCAGACACATGCTGTTT+GGG | - | chr5.4:42207902-42207921 | MS.gene78738:intron | 45.0% |
| ! | TGATGTTGAGTGGTGGTGAT+GGG | - | chr5.4:42207393-42207412 | MS.gene78738:CDS | 45.0% |
| ! | TTGATGTTGAGTGGTGGTGA+TGG | - | chr5.4:42207392-42207411 | MS.gene78738:CDS | 45.0% |
| !! | AGAATCAGGTATCGAAGACC+CGG | - | chr5.4:42207319-42207338 | MS.gene78738:CDS | 45.0% |
| !! | CTTACAAAGCTGGTTTGGTG+AGG | + | chr5.4:42207785-42207804 | None:intergenic | 45.0% |
| !! | GTATCGAGTTGGCGAAACAT+CGG | - | chr5.4:42207148-42207167 | MS.gene78738:intron | 45.0% |
| !! | TATCGAGTTGGCGAAACATC+GGG | - | chr5.4:42207149-42207168 | MS.gene78738:intron | 45.0% |
| !! | TGGTTTGGTGAGGATGAGTT+AGG | + | chr5.4:42207775-42207794 | None:intergenic | 45.0% |
| AACCAGGCATGAGGGATCTA+AGG | + | chr5.4:42207676-42207695 | None:intergenic | 50.0% | |
| ACCCTTTGCACGTATGAACC+AGG | + | chr5.4:42207692-42207711 | None:intergenic | 50.0% | |
| AGGAGACAGGAACATACGTC+TGG | + | chr5.4:42207955-42207974 | None:intergenic | 50.0% | |
| ATTCTCTCAAGGAGAAGGCC+TGG | - | chr5.4:42208477-42208496 | MS.gene78738:CDS | 50.0% | |
| CACGTATGAACCAGGCATGA+GGG | + | chr5.4:42207684-42207703 | None:intergenic | 50.0% | |
| GCCTGGTTCATACGTGCAAA+GGG | - | chr5.4:42207688-42207707 | MS.gene78738:intron | 50.0% | |
| GCCTTAAACCGCGAAGAATC+AGG | - | chr5.4:42207305-42207324 | MS.gene78738:CDS | 50.0% | |
| GGGGGCTATAGAGTTTGTGA+GGG | - | chr5.4:42208200-42208219 | MS.gene78738:CDS | 50.0% | |
| GTCCTCAGACACATGCTGTT+TGG | - | chr5.4:42207901-42207920 | MS.gene78738:intron | 50.0% | |
| TGCCTGGTTCATACGTGCAA+AGG | - | chr5.4:42207687-42207706 | MS.gene78738:intron | 50.0% | |
| ! | CCTCAGACACATGCTGTTTG+GGG | - | chr5.4:42207903-42207922 | MS.gene78738:intron | 50.0% |
| ! | CTCAGACACATGCTGTTTGG+GGG | - | chr5.4:42207904-42207923 | MS.gene78738:intron | 50.0% |
| ! | GTGTTGAAGCTTGGTGGCAT+GGG | + | chr5.4:42207062-42207081 | None:intergenic | 50.0% |
| ! | TGTGTTGAAGCTTGGTGGCA+TGG | + | chr5.4:42207063-42207082 | None:intergenic | 50.0% |
| !! | TTGAGTGGTGGTGATGGGTT+AGG | - | chr5.4:42207398-42207417 | MS.gene78738:CDS | 50.0% |
| CCCCAAACAGCATGTGTCTG+AGG | + | chr5.4:42207906-42207925 | None:intergenic | 55.0% | |
| GCACGTATGAACCAGGCATG+AGG | + | chr5.4:42207685-42207704 | None:intergenic | 55.0% | |
| GGGGGGCTATAGAGTTTGTG+AGG | - | chr5.4:42208199-42208218 | MS.gene78738:CDS | 55.0% | |
| GTCCTTAGATCCCTCATGCC+TGG | - | chr5.4:42207671-42207690 | MS.gene78738:intron | 55.0% | |
| ! | AGACACATGCTGTTTGGGGG+TGG | - | chr5.4:42207907-42207926 | MS.gene78738:intron | 55.0% |
| ! | TTGAAGCTTGGTGGCATGGG+TGG | + | chr5.4:42207059-42207078 | None:intergenic | 55.0% |
| GCTGTTTGGGGGTGGTCGCA+CGG | - | chr5.4:42207915-42207934 | MS.gene78738:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 42206872 | 42208929 | 42206872 | ID=MS.gene78738 |
| chr5.4 | mRNA | 42206872 | 42208929 | 42206872 | ID=MS.gene78738.t1;Parent=MS.gene78738 |
| chr5.4 | exon | 42208906 | 42208929 | 42208906 | ID=MS.gene78738.t1.exon1;Parent=MS.gene78738.t1 |
| chr5.4 | CDS | 42208906 | 42208929 | 42208906 | ID=cds.MS.gene78738.t1;Parent=MS.gene78738.t1 |
| chr5.4 | exon | 42208092 | 42208748 | 42208092 | ID=MS.gene78738.t1.exon2;Parent=MS.gene78738.t1 |
| chr5.4 | CDS | 42208092 | 42208748 | 42208092 | ID=cds.MS.gene78738.t1;Parent=MS.gene78738.t1 |
| chr5.4 | exon | 42207196 | 42207624 | 42207196 | ID=MS.gene78738.t1.exon3;Parent=MS.gene78738.t1 |
| chr5.4 | CDS | 42207196 | 42207624 | 42207196 | ID=cds.MS.gene78738.t1;Parent=MS.gene78738.t1 |
| chr5.4 | exon | 42206872 | 42206961 | 42206872 | ID=MS.gene78738.t1.exon4;Parent=MS.gene78738.t1 |
| chr5.4 | CDS | 42206872 | 42206961 | 42206872 | ID=cds.MS.gene78738.t1;Parent=MS.gene78738.t1 |
| Gene Sequence |
| Protein sequence |
