AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056897


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056897.t1 MTR_1g059670 98.689 305 4 0 1 305 1 305 0.0 617
MS.gene056897.t1 MTR_4g035650 69.231 247 74 1 59 305 68 312 1.49e-124 358
MS.gene056897.t1 MTR_4g035650 68.016 247 75 2 59 305 68 310 9.72e-121 349
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056897.t1 AT5G06130 68.647 303 76 3 6 305 29 315 8.74e-144 407
MS.gene056897.t1 AT5G06130 77.155 232 52 1 74 305 1 231 1.34e-129 368
MS.gene056897.t1 AT5G61670 69.880 249 73 1 57 305 61 307 5.50e-125 359
MS.gene056897.t1 AT5G61670 69.880 249 73 1 57 305 61 307 5.50e-125 359

Find 66 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAAAATCTTTCTTCTTA+TGG 0.155230 1.1:+45479511 MS.gene056897:CDS
ATATCTGCAATAATTGTATT+TGG 0.197063 1.1:+45480428 MS.gene056897:CDS
ATGGCAGCTGGAGCTGAAAT+TGG 0.211679 1.1:+45481696 MS.gene056897:intron
GGAATAGATGATGGAATTTC+CGG 0.218058 1.1:-45480036 None:intergenic
TTTGAACATTAATCCGATTT+CGG 0.296746 1.1:+45482192 MS.gene056897:CDS
TTTCCAGCACCAGAGCAATT+TGG 0.301546 1.1:-45482265 None:intergenic
TTTAAAAGGGGCAAAGAAAA+TGG 0.310012 1.1:-45479212 None:intergenic
TGCATTTGCCTTTGCAACTA+AGG 0.340206 1.1:+45481758 MS.gene056897:CDS
TAACTTTGGTGTGATTTCAT+TGG 0.363903 1.1:-45479305 None:intergenic
CCCGAAAAGGATGCCACAAT+TGG 0.377796 1.1:-45481921 None:intergenic
TGTCCAACCTGCCTTTGCAC+TGG 0.394247 1.1:+45482394 MS.gene056897:CDS
ATTAATCCGATTTCGGCATC+TGG 0.402233 1.1:+45482199 MS.gene056897:CDS
GAAGGAGAGAAAGTATTCAT+TGG 0.405939 1.1:-45479151 None:intergenic
TTGAAGAAGCTCTATCTAAC+AGG 0.406814 1.1:+45480395 MS.gene056897:CDS
ACAAAATCCTGAACCGTCTC+TGG 0.410773 1.1:-45479443 None:intergenic
TGAAGGGCCAGAGACGGTTC+AGG 0.418010 1.1:+45479436 MS.gene056897:CDS
TTTGGACACCTTGTCGTTGT+AGG 0.425866 1.1:-45482247 None:intergenic
CTCACCACATGAGGAAGAAA+AGG 0.428649 1.1:-45480057 None:intergenic
GAAGTACCAGATGCCGAAAT+CGG 0.441052 1.1:-45482205 None:intergenic
TTCAGTACTGATGTTAATTG+AGG 0.445259 1.1:+45481962 MS.gene056897:CDS
TGTCCAAATTGCTCTGGTGC+TGG 0.448257 1.1:+45482262 MS.gene056897:CDS
TAGAGCTTCTTCAAAGTGTT+GGG 0.450361 1.1:-45480386 None:intergenic
CTGGAGCTGAAATTGGGTAT+AGG 0.452466 1.1:+45481703 MS.gene056897:CDS
AGTCAAATGGATCAATTCTC+AGG 0.456133 1.1:-45482441 None:intergenic
AATCTTTCTTCTTATGGAAG+AGG 0.457917 1.1:+45479517 MS.gene056897:CDS
TGCTCTTCTCCACAGGATGC+AGG 0.457995 1.1:+45479280 MS.gene056897:CDS
TGCAAGTATTGCCTTGGAAC+TGG 0.458275 1.1:+45482017 MS.gene056897:CDS
TACTTCTGTTAGACCCCTGC+AGG 0.461988 1.1:+45482222 MS.gene056897:CDS
CATGTAAAGAATTAGTCAAA+TGG 0.467029 1.1:-45482454 None:intergenic
ATAGAGCTTCTTCAAAGTGT+TGG 0.477201 1.1:-45480387 None:intergenic
CTGCAATAATTGTATTTGGC+GGG 0.477772 1.1:+45480432 MS.gene056897:CDS
CAGGTTACTTGGCTTGCGCT+CGG 0.481171 1.1:+45482149 MS.gene056897:intron
GTCCAACCTGCCTTTGCACT+GGG 0.482552 1.1:+45482395 MS.gene056897:CDS
GCCAACTGCTCCACCCGAAA+AGG 0.487934 1.1:-45481934 None:intergenic
TGGCAGCTGGAGCTGAAATT+GGG 0.494726 1.1:+45481697 MS.gene056897:intron
GGAAGAAAAGGAATAGATGA+TGG 0.501221 1.1:-45480045 None:intergenic
TTGTCGTTGTAGGAACCTGC+AGG 0.508146 1.1:-45482237 None:intergenic
TATAGGTGGTACGTCATATG+AGG 0.517667 1.1:+45481720 MS.gene056897:CDS
CCGAAAAGGATGCCACAATT+GGG 0.520908 1.1:-45481920 None:intergenic
ACAAGGTGCAAGTATTGCCT+TGG 0.523158 1.1:+45482011 MS.gene056897:CDS
TAAGGTAGAATTGTGGAGGA+AGG 0.527472 1.1:-45479169 None:intergenic
TGCGCTCGGTGTTCCACAAG+TGG 0.528281 1.1:+45482163 MS.gene056897:CDS
AATTGCGTGCTCTTCTCCAC+AGG 0.533626 1.1:+45479273 MS.gene056897:CDS
ACAAGGTGTCCAAATTGCTC+TGG 0.537901 1.1:+45482256 MS.gene056897:CDS
GTTCAAACATACACCACTTG+TGG 0.537962 1.1:-45482176 None:intergenic
CTTCATCCCAGTGCAAAGGC+AGG 0.549940 1.1:-45482401 None:intergenic
AAATTGCTCTGGTGCTGGAA+AGG 0.553692 1.1:+45482267 MS.gene056897:CDS
GGAAGATGCAAATGAGATGC+CGG 0.556353 1.1:+45480017 MS.gene056897:CDS
TCTGCAATAATTGTATTTGG+CGG 0.560108 1.1:+45480431 MS.gene056897:CDS
GGAGATTGCGTGTGCAGCAG+CGG 0.563072 1.1:+45479956 MS.gene056897:CDS
ATAGCATACCTTAGTTGCAA+AGG 0.566228 1.1:-45481766 None:intergenic
ATCCCAGTGCAAAGGCAGGT+TGG 0.571963 1.1:-45482397 None:intergenic
TGTCGTTGTAGGAACCTGCA+GGG 0.577519 1.1:-45482236 None:intergenic
CATTATTGAAGGGCCAGAGA+CGG 0.585450 1.1:+45479430 MS.gene056897:CDS
AGGGTAAGGTAGAATTGTGG+AGG 0.586801 1.1:-45479173 None:intergenic
CAGTCAAGTTGACCCAATTG+TGG 0.589524 1.1:+45481908 MS.gene056897:intron
TGAAGGGTAAGGTAGAATTG+TGG 0.598098 1.1:-45479176 None:intergenic
CCTTTGCACTGGGATGAAGA+TGG 0.608589 1.1:+45482405 MS.gene056897:CDS
TCATTGGAGCCTGCATCCTG+TGG 0.609087 1.1:-45479289 None:intergenic
GAGCTGAAATTGGGTATAGG+TGG 0.611943 1.1:+45481706 MS.gene056897:CDS
TGGCGGGCTTATTGCACCGA+CGG 0.621713 1.1:+45480448 MS.gene056897:CDS
CCATCTTCATCCCAGTGCAA+AGG 0.623251 1.1:-45482405 None:intergenic
TTGAGCAACAAGAGAAAACA+AGG 0.624269 1.1:+45481994 MS.gene056897:CDS
GTAGAAACATACCAGTTCCA+AGG 0.632023 1.1:-45482028 None:intergenic
GTCGTTGTAGGAACCTGCAG+GGG 0.684640 1.1:-45482235 None:intergenic
TGCAGGTTCCTACAACGACA+AGG 0.684689 1.1:+45482239 MS.gene056897:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTGACAATTTAAATTT+TGG + chr1.1:45480860-45480879 MS.gene056897:intron 10.0%
!!! ATATTAAATCCTTATTTTAA+TGG + chr1.1:45481677-45481696 MS.gene056897:intron 10.0%
!!! ATTTTGACAATTTAAATTTT+GGG + chr1.1:45480861-45480880 MS.gene056897:intron 10.0%
!! AATTATAGAAAATAGCATAA+AGG - chr1.1:45480991-45481010 None:intergenic 15.0%
!! ATTATAGAAAATAGCATAAA+GGG - chr1.1:45480990-45481009 None:intergenic 15.0%
!!! AGTTTTTTTTTTTGCTTATT+GGG + chr1.1:45479327-45479346 MS.gene056897:intron 15.0%
!!! ATAAAAAGTTTTTGAAATCA+AGG - chr1.1:45481081-45481100 None:intergenic 15.0%
!!! TAGTTTTTTTTTTTGCTTAT+TGG + chr1.1:45479326-45479345 MS.gene056897:intron 15.0%
!!! TTATTTACCTTTAATTTAAG+TGG + chr1.1:45481569-45481588 MS.gene056897:intron 15.0%
!!! TTTGAAGAATTTAAAATTCT+AGG + chr1.1:45481325-45481344 MS.gene056897:intron 15.0%
!!! TTTTGAATAACTTATGAAAA+CGG - chr1.1:45479809-45479828 None:intergenic 15.0%
!!! TTTTGACAATTTAAATTTTG+GGG + chr1.1:45480862-45480881 MS.gene056897:intron 15.0%
!! AACATAGTGATACTTAATAA+GGG - chr1.1:45480595-45480614 None:intergenic 20.0%
!! AACTTACTATAAGATATAAG+CGG - chr1.1:45479887-45479906 None:intergenic 20.0%
!! AATAATCATCCTAAATTACT+TGG + chr1.1:45480507-45480526 MS.gene056897:intron 20.0%
!! AATTAAACAGTTGCATATAT+CGG - chr1.1:45482312-45482331 None:intergenic 20.0%
!! ATAATCATCCTAAATTACTT+GGG + chr1.1:45480508-45480527 MS.gene056897:intron 20.0%
!! ATATCTGCAATAATTGTATT+TGG + chr1.1:45480428-45480447 MS.gene056897:CDS 20.0%
!! ATTAGTAGTACATAAAGTAT+AGG + chr1.1:45481008-45481027 MS.gene056897:intron 20.0%
!! ATTTCTTTCTTTCTGATAAA+CGG - chr1.1:45481822-45481841 None:intergenic 20.0%
!! CAATAAAATCTTTCTTCTTA+TGG + chr1.1:45479511-45479530 MS.gene056897:CDS 20.0%
!! GCAAAAAAAAAAACTAACTT+TGG - chr1.1:45479322-45479341 None:intergenic 20.0%
!! TAACATAGTGATACTTAATA+AGG - chr1.1:45480596-45480615 None:intergenic 20.0%
!! TAGTTTAAATAAGACACTTA+AGG + chr1.1:45480181-45480200 MS.gene056897:intron 20.0%
!! TTGACTTAGAAAAAGAAAAT+TGG - chr1.1:45479249-45479268 None:intergenic 20.0%
!!! AAATTTGTAATTTTATGGAC+AGG + chr1.1:45482130-45482149 MS.gene056897:intron 20.0%
!!! AATTTTCTTTTTCTAAGTCA+AGG + chr1.1:45479248-45479267 MS.gene056897:CDS 20.0%
!!! ATGTTAGTGATTAATTTGTT+AGG + chr1.1:45481115-45481134 MS.gene056897:intron 20.0%
!!! GTCAATTTTCATTCATATTA+TGG + chr1.1:45479573-45479592 MS.gene056897:intron 20.0%
! ACTTACTATAAGATATAAGC+GGG - chr1.1:45479886-45479905 None:intergenic 25.0%
! AGTACTTAAAGATATTGGTA+TGG - chr1.1:45480133-45480152 None:intergenic 25.0%
! ATACTTAATAAGGGTAACAA+AGG - chr1.1:45480586-45480605 None:intergenic 25.0%
! CAAAATTTAAACTTTGCAAC+TGG + chr1.1:45479366-45479385 MS.gene056897:intron 25.0%
! CACTATGTTAAGTTTAAATC+TGG + chr1.1:45480606-45480625 MS.gene056897:intron 25.0%
! CTTAGAAAAAGAAAATTGGT+TGG - chr1.1:45479245-45479264 None:intergenic 25.0%
! GTAAATAAATGTGAGTGAAT+AGG - chr1.1:45481557-45481576 None:intergenic 25.0%
! TAAGACAATAAAATTACCGT+CGG - chr1.1:45480467-45480486 None:intergenic 25.0%
! TCTTCAGTACTTAAAGATAT+TGG - chr1.1:45480138-45480157 None:intergenic 25.0%
! TTTGAACATTAATCCGATTT+CGG + chr1.1:45482192-45482211 MS.gene056897:CDS 25.0%
!! ATCTTTTAATCATTTGCTCT+TGG - chr1.1:45480951-45480970 None:intergenic 25.0%
!! CAATTCTAGAAAGAATAGAA+AGG - chr1.1:45482099-45482118 None:intergenic 25.0%
!! GTCTTATCATTTAAGATGAA+AGG - chr1.1:45480800-45480819 None:intergenic 25.0%
!! GTTTTCATGTAACTTATAAG+CGG + chr1.1:45479708-45479727 MS.gene056897:intron 25.0%
!! TTTGAAATGAATGTAGATCA+TGG - chr1.1:45481658-45481677 None:intergenic 25.0%
!!! ACAATTTTGAGAATGGATAA+AGG + chr1.1:45480818-45480837 MS.gene056897:intron 25.0%
!!! CAATTTTGAGAATGGATAAA+GGG + chr1.1:45480819-45480838 MS.gene056897:intron 25.0%
!!! GTCATATGTGTTTTTTGTTT+AGG + chr1.1:45482366-45482385 MS.gene056897:intron 25.0%
!!! TGATAAGACAATTTTGAGAA+TGG + chr1.1:45480811-45480830 MS.gene056897:intron 25.0%
AATCAGTAGCAAACTATAGT+AGG - chr1.1:45480715-45480734 None:intergenic 30.0%
AATCTTTCTTCTTATGGAAG+AGG + chr1.1:45479517-45479536 MS.gene056897:CDS 30.0%
AGGAACTTTGTAAAATGAGA+GGG + chr1.1:45481028-45481047 MS.gene056897:intron 30.0%
CCAATAGCTTAATCAAAACA+AGG - chr1.1:45480091-45480110 None:intergenic 30.0%
GAGGAAATGTAATGTTATGA+GGG - chr1.1:45481376-45481395 None:intergenic 30.0%
GGAAATGTAATGTAATGTTG+AGG - chr1.1:45481395-45481414 None:intergenic 30.0%
TAAAGTGAGAATTAAACCCA+AGG - chr1.1:45480659-45480678 None:intergenic 30.0%
TACGAGACCACTTAAATTAA+AGG - chr1.1:45481579-45481598 None:intergenic 30.0%
TAGGAACTTTGTAAAATGAG+AGG + chr1.1:45481027-45481046 MS.gene056897:intron 30.0%
TCTGCAATAATTGTATTTGG+CGG + chr1.1:45480431-45480450 MS.gene056897:CDS 30.0%
TGACTAATGAGAAATGAGTA+TGG + chr1.1:45479926-45479945 MS.gene056897:intron 30.0%
TGAGGAAATGTAATGTTATG+AGG - chr1.1:45481377-45481396 None:intergenic 30.0%
TGTTAAGTTTAAATCTGGCT+TGG + chr1.1:45480611-45480630 MS.gene056897:intron 30.0%
TTAATCATTTGCTCTTGGAA+AGG - chr1.1:45480946-45480965 None:intergenic 30.0%
TTCGATAGATGAGAAACAAA+AGG - chr1.1:45480288-45480307 None:intergenic 30.0%
TTTAAAAGGGGCAAAGAAAA+TGG - chr1.1:45479215-45479234 None:intergenic 30.0%
! AATTTTATGGACAGGTTACT+TGG + chr1.1:45482138-45482157 MS.gene056897:intron 30.0%
! AGAGAAATTTAGAGTGTGTT+TGG + chr1.1:45481284-45481303 MS.gene056897:intron 30.0%
! AGCAACTTTTGCATTATTGA+AGG + chr1.1:45479419-45479438 MS.gene056897:intron 30.0%
! ATTTTCTTTGCCCCTTTTAA+AGG + chr1.1:45479214-45479233 MS.gene056897:CDS 30.0%
! GATAAAAGTATGAGTCAACA+TGG - chr1.1:45480682-45480701 None:intergenic 30.0%
! GCAACTTTTGCATTATTGAA+GGG + chr1.1:45479420-45479439 MS.gene056897:intron 30.0%
! TAACTTTGGTGTGATTTCAT+TGG - chr1.1:45479308-45479327 None:intergenic 30.0%
! TTAACTAATTCCGTGCTTTT+CGG + chr1.1:45480350-45480369 MS.gene056897:intron 30.0%
!! AAAGAATTTGTTAGCACAGT+AGG + chr1.1:45481143-45481162 MS.gene056897:intron 30.0%
!! AAGAATTTGTTAGCACAGTA+GGG + chr1.1:45481144-45481163 MS.gene056897:intron 30.0%
!! ACTCTAAAGGAGTATTAAGA+AGG - chr1.1:45481187-45481206 None:intergenic 30.0%
!! CTTATTTTCATAAGTACTCC+AGG - chr1.1:45479748-45479767 None:intergenic 30.0%
!! TTCAGTACTGATGTTAATTG+AGG + chr1.1:45481962-45481981 MS.gene056897:CDS 30.0%
!!! CCTTGTTTTGATTAAGCTAT+TGG + chr1.1:45480088-45480107 MS.gene056897:intron 30.0%
!!! GGTTGGTTTTACCTTTAAAA+GGG - chr1.1:45479228-45479247 None:intergenic 30.0%
!!! GTTGGTTTTACCTTTAAAAG+GGG - chr1.1:45479227-45479246 None:intergenic 30.0%
!!! TGGTTGGTTTTACCTTTAAA+AGG - chr1.1:45479229-45479248 None:intergenic 30.0%
!!! TTTAAATCTGGCTTGGATTT+TGG + chr1.1:45480618-45480637 MS.gene056897:intron 30.0%
AACAGACACCCAAGTAATTT+AGG - chr1.1:45480519-45480538 None:intergenic 35.0%
AACTTTGTAAAATGAGAGGG+TGG + chr1.1:45481031-45481050 MS.gene056897:intron 35.0%
AGTCAAATGGATCAATTCTC+AGG - chr1.1:45482444-45482463 None:intergenic 35.0%
ATAGAGCTTCTTCAAAGTGT+TGG - chr1.1:45480390-45480409 None:intergenic 35.0%
ATAGCATACCTTAGTTGCAA+AGG - chr1.1:45481769-45481788 None:intergenic 35.0%
CTGCAATAATTGTATTTGGC+GGG + chr1.1:45480432-45480451 MS.gene056897:CDS 35.0%
GAACCAAACAAATTGTGATC+AGG - chr1.1:45481881-45481900 None:intergenic 35.0%
GAATTCCATTGTTTGGATGA+GGG - chr1.1:45481436-45481455 None:intergenic 35.0%
GAGGGAATGTAATGTTATGA+GGG - chr1.1:45481478-45481497 None:intergenic 35.0%
GAGGGAATTCAAATACTTAG+AGG - chr1.1:45481358-45481377 None:intergenic 35.0%
GAGGGAATTCAAATACTTTG+AGG - chr1.1:45481460-45481479 None:intergenic 35.0%
GCATATATCGGCAAGAATTA+GGG - chr1.1:45482300-45482319 None:intergenic 35.0%
GCATTTCACTATTGATCCTT+GGG + chr1.1:45480640-45480659 MS.gene056897:intron 35.0%
GGAAGAAAAGGAATAGATGA+TGG - chr1.1:45480048-45480067 None:intergenic 35.0%
GGGAATGTAATGTAATGTTG+AGG - chr1.1:45481416-45481435 None:intergenic 35.0%
TAATGAGAAATGAGTATGGC+AGG + chr1.1:45479930-45479949 MS.gene056897:intron 35.0%
TGAATTCCATTGTTTGGATG+AGG - chr1.1:45481437-45481456 None:intergenic 35.0%
TGAGGGAATGTAATGTTATG+AGG - chr1.1:45481479-45481498 None:intergenic 35.0%
TGCATATATCGGCAAGAATT+AGG - chr1.1:45482301-45482320 None:intergenic 35.0%
TGTGTTTGGATGAGGTAATT+TGG + chr1.1:45481298-45481317 MS.gene056897:intron 35.0%
TTGAAGAAGCTCTATCTAAC+AGG + chr1.1:45480395-45480414 MS.gene056897:CDS 35.0%
TTGAGCAACAAGAGAAAACA+AGG + chr1.1:45481994-45482013 MS.gene056897:CDS 35.0%
TTGAGGTGAATTCCATTGTT+TGG - chr1.1:45481443-45481462 None:intergenic 35.0%
TTTCTACACTGAAGTTGAAC+TGG + chr1.1:45482044-45482063 MS.gene056897:intron 35.0%
! ACAAAGAGCTTTTAGTGAAG+AGG + chr1.1:45479990-45480009 MS.gene056897:CDS 35.0%
! ATGCCTGATCACAATTTGTT+TGG + chr1.1:45481875-45481894 MS.gene056897:intron 35.0%
! ATTTAGAGTGTGTTTGGATG+AGG + chr1.1:45481290-45481309 MS.gene056897:intron 35.0%
! CAAAGAGCTTTTAGTGAAGA+GGG + chr1.1:45479991-45480010 MS.gene056897:CDS 35.0%
! GGCAAAGAAAATGGAGTTTT+TGG - chr1.1:45479206-45479225 None:intergenic 35.0%
! TAGAGCTTCTTCAAAGTGTT+GGG - chr1.1:45480389-45480408 None:intergenic 35.0%
! TATTCCTTTTCTTCCTCATG+TGG + chr1.1:45480053-45480072 MS.gene056897:CDS 35.0%
!! AGAATTTGTTAGCACAGTAG+GGG + chr1.1:45481145-45481164 MS.gene056897:intron 35.0%
!! ATGGAGTTTTTGGAAAGTGA+AGG - chr1.1:45479196-45479215 None:intergenic 35.0%
!! CTAAAGGAGTATTAAGAAGG+AGG - chr1.1:45481184-45481203 None:intergenic 35.0%
!! GGAATAGATGATGGAATTTC+CGG - chr1.1:45480039-45480058 None:intergenic 35.0%
!! GTATTCGAAATGAGAGCATT+TGG + chr1.1:45480316-45480335 MS.gene056897:intron 35.0%
!! TGGAGTTTTTGGAAAGTGAA+GGG - chr1.1:45479195-45479214 None:intergenic 35.0%
!! TTTTTGGAAAGTGAAGGGTA+AGG - chr1.1:45479190-45479209 None:intergenic 35.0%
!!! ATCCTTATTTTAATGGCAGC+TGG + chr1.1:45481684-45481703 MS.gene056897:intron 35.0%
!!! GTTTTAAAACTCACCACATG+AGG - chr1.1:45480069-45480088 None:intergenic 35.0%
ACATTCCCTCATCCAAACAA+TGG + chr1.1:45481428-45481447 MS.gene056897:intron 40.0%
AGAAATGAGTATGGCAGGTT+AGG + chr1.1:45479935-45479954 MS.gene056897:intron 40.0%
ATCATTTGCTCTTGGAAAGG+AGG - chr1.1:45480943-45480962 None:intergenic 40.0%
ATTAATCCGATTTCGGCATC+TGG + chr1.1:45482199-45482218 MS.gene056897:CDS 40.0%
CTACTTCAATCCGAAAAGCA+CGG - chr1.1:45480363-45480382 None:intergenic 40.0%
CTCCAGCTGCCATTAAAATA+AGG - chr1.1:45481689-45481708 None:intergenic 40.0%
GGCATTTCACTATTGATCCT+TGG + chr1.1:45480639-45480658 MS.gene056897:intron 40.0%
GTAGAAACATACCAGTTCCA+AGG - chr1.1:45482031-45482050 None:intergenic 40.0%
GTTCAAACATACACCACTTG+TGG - chr1.1:45482179-45482198 None:intergenic 40.0%
TAAGGTAGAATTGTGGAGGA+AGG - chr1.1:45479172-45479191 None:intergenic 40.0%
TATAGGTGGTACGTCATATG+AGG + chr1.1:45481720-45481739 MS.gene056897:CDS 40.0%
TGAAGGGTAAGGTAGAATTG+TGG - chr1.1:45479179-45479198 None:intergenic 40.0%
TGCATTTGCCTTTGCAACTA+AGG + chr1.1:45481758-45481777 MS.gene056897:CDS 40.0%
TTTCATAAATCAGACCCCGA+AGG - chr1.1:45481234-45481253 None:intergenic 40.0%
! TCAGGATTTTGTTCAGATGC+AGG + chr1.1:45479454-45479473 MS.gene056897:CDS 40.0%
! TGGGGTGCAAGTTTAGTTTA+AGG + chr1.1:45480880-45480899 MS.gene056897:intron 40.0%
ACAAAATCCTGAACCGTCTC+TGG - chr1.1:45479446-45479465 None:intergenic 45.0%
AGGGTAAGGTAGAATTGTGG+AGG - chr1.1:45479176-45479195 None:intergenic 45.0%
AGTATTAAGAAGGAGGACCC+AGG - chr1.1:45481177-45481196 None:intergenic 45.0%
ATGCTTCACCCTAGTGTGTT+TGG - chr1.1:45481516-45481535 None:intergenic 45.0%
CACAATTGGGTCAACTTGAC+TGG - chr1.1:45481910-45481929 None:intergenic 45.0%
CATTATTGAAGGGCCAGAGA+CGG + chr1.1:45479430-45479449 MS.gene056897:CDS 45.0%
CCGAAAAGGATGCCACAATT+GGG - chr1.1:45481923-45481942 None:intergenic 45.0%
CTCACCACATGAGGAAGAAA+AGG - chr1.1:45480060-45480079 None:intergenic 45.0%
CTGGAGCTGAAATTGGGTAT+AGG + chr1.1:45481703-45481722 MS.gene056897:CDS 45.0%
GAGCTGAAATTGGGTATAGG+TGG + chr1.1:45481706-45481725 MS.gene056897:CDS 45.0%
GGAAGATGCAAATGAGATGC+CGG + chr1.1:45480017-45480036 MS.gene056897:CDS 45.0%
TCACCCTAGTGTGTTTGGAT+GGG - chr1.1:45481511-45481530 None:intergenic 45.0%
TTCACCCTAGTGTGTTTGGA+TGG - chr1.1:45481512-45481531 None:intergenic 45.0%
TTTCCAGCACCAGAGCAATT+TGG - chr1.1:45482268-45482287 None:intergenic 45.0%
TTTGGACACCTTGTCGTTGT+AGG - chr1.1:45482250-45482269 None:intergenic 45.0%
! AAATTGCTCTGGTGCTGGAA+AGG + chr1.1:45482267-45482286 MS.gene056897:CDS 45.0%
! ACAAGGTGCAAGTATTGCCT+TGG + chr1.1:45482011-45482030 MS.gene056897:CDS 45.0%
! ACAAGGTGTCCAAATTGCTC+TGG + chr1.1:45482256-45482275 MS.gene056897:CDS 45.0%
! AGCTTTTAGTGAAGAGGGAG+AGG + chr1.1:45479996-45480015 MS.gene056897:CDS 45.0%
! CCAATTGTGGCATCCTTTTC+GGG + chr1.1:45481921-45481940 MS.gene056897:CDS 45.0%
! CCCAATTGTGGCATCCTTTT+CGG + chr1.1:45481920-45481939 MS.gene056897:CDS 45.0%
! GAAGTACCAGATGCCGAAAT+CGG - chr1.1:45482208-45482227 None:intergenic 45.0%
! TGCAAGTATTGCCTTGGAAC+TGG + chr1.1:45482017-45482036 MS.gene056897:CDS 45.0%
! TTGGATGGGGGAATGTTTTG+AGG - chr1.1:45481497-45481516 None:intergenic 45.0%
! TTTTGTTCAGATGCAGGTGC+AGG + chr1.1:45479460-45479479 MS.gene056897:CDS 45.0%
!! CAGTCAAGTTGACCCAATTG+TGG + chr1.1:45481908-45481927 MS.gene056897:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG - chr1.1:45481496-45481515 None:intergenic 45.0%
!!! AAAACTTTTTATTTTTTTAT+AGG + chr1.1:45481089-45481108 MS.gene056897:intron 5.0%
!!! TTATAAAATTTGTAATTTTA+TGG + chr1.1:45482125-45482144 MS.gene056897:intron 5.0%
AATTGCGTGCTCTTCTCCAC+AGG + chr1.1:45479273-45479292 MS.gene056897:CDS 50.0%
ACCCTAGTGTGTTTGGATGG+GGG - chr1.1:45481509-45481528 None:intergenic 50.0%
ATGGCAGCTGGAGCTGAAAT+TGG + chr1.1:45481696-45481715 MS.gene056897:intron 50.0%
CACAGTAGGGGTCAAAACCT+GGG + chr1.1:45481157-45481176 MS.gene056897:intron 50.0%
CACCCTAGTGTGTTTGGATG+GGG - chr1.1:45481510-45481529 None:intergenic 50.0%
CCATCTTCATCCCAGTGCAA+AGG - chr1.1:45482408-45482427 None:intergenic 50.0%
CCCGAAAAGGATGCCACAAT+TGG - chr1.1:45481924-45481943 None:intergenic 50.0%
CCTTTGCACTGGGATGAAGA+TGG + chr1.1:45482405-45482424 MS.gene056897:CDS 50.0%
TACTTCTGTTAGACCCCTGC+AGG + chr1.1:45482222-45482241 MS.gene056897:CDS 50.0%
TCCCCCATCCAAACACACTA+GGG + chr1.1:45481505-45481524 MS.gene056897:intron 50.0%
TGCAGGTTCCTACAACGACA+AGG + chr1.1:45482239-45482258 MS.gene056897:CDS 50.0%
TGGCAGCTGGAGCTGAAATT+GGG + chr1.1:45481697-45481716 MS.gene056897:intron 50.0%
TGTCCAAATTGCTCTGGTGC+TGG + chr1.1:45482262-45482281 MS.gene056897:CDS 50.0%
TGTCGTTGTAGGAACCTGCA+GGG - chr1.1:45482239-45482258 None:intergenic 50.0%
TTCCCCCATCCAAACACACT+AGG + chr1.1:45481504-45481523 MS.gene056897:intron 50.0%
TTGTCGTTGTAGGAACCTGC+AGG - chr1.1:45482240-45482259 None:intergenic 50.0%
! GCGGTTTTCGTAAGCTATCC+TGG + chr1.1:45479727-45479746 MS.gene056897:intron 50.0%
!! ATTGTGGCATCCTTTTCGGG+TGG + chr1.1:45481924-45481943 MS.gene056897:CDS 50.0%
!! GGTATCGGTTGGGACTCTAA+AGG - chr1.1:45481200-45481219 None:intergenic 50.0%
AAGGTGTACCCCAGCGGTAT+CGG - chr1.1:45481215-45481234 None:intergenic 55.0%
ATACCGCTGGGGTACACCTT+CGG + chr1.1:45481215-45481234 MS.gene056897:intron 55.0%
ATCCCAGTGCAAAGGCAGGT+TGG - chr1.1:45482400-45482419 None:intergenic 55.0%
CTTCATCCCAGTGCAAAGGC+AGG - chr1.1:45482404-45482423 None:intergenic 55.0%
GCACAGTAGGGGTCAAAACC+TGG + chr1.1:45481156-45481175 MS.gene056897:intron 55.0%
GTCCAACCTGCCTTTGCACT+GGG + chr1.1:45482395-45482414 MS.gene056897:CDS 55.0%
GTCGTTGTAGGAACCTGCAG+GGG - chr1.1:45482238-45482257 None:intergenic 55.0%
TCATTGGAGCCTGCATCCTG+TGG - chr1.1:45479292-45479311 None:intergenic 55.0%
TGCTCTTCTCCACAGGATGC+AGG + chr1.1:45479280-45479299 MS.gene056897:CDS 55.0%
TGTCCAACCTGCCTTTGCAC+TGG + chr1.1:45482394-45482413 MS.gene056897:CDS 55.0%
!! CAGGTTACTTGGCTTGCGCT+CGG + chr1.1:45482149-45482168 MS.gene056897:intron 55.0%
!!! TCCTTTTCGGGTGGAGCAGT+TGG + chr1.1:45481933-45481952 MS.gene056897:CDS 55.0%
AGAGTCCCAACCGATACCGC+TGG + chr1.1:45481202-45481221 MS.gene056897:intron 60.0%
AGTCCCAACCGATACCGCTG+GGG + chr1.1:45481204-45481223 MS.gene056897:intron 60.0%
GAGTCCCAACCGATACCGCT+GGG + chr1.1:45481203-45481222 MS.gene056897:intron 60.0%
GCCAACTGCTCCACCCGAAA+AGG - chr1.1:45481937-45481956 None:intergenic 60.0%
GGAGATTGCGTGTGCAGCAG+CGG + chr1.1:45479956-45479975 MS.gene056897:CDS 60.0%
TACCGCTGGGGTACACCTTC+GGG + chr1.1:45481216-45481235 MS.gene056897:intron 60.0%
TGAAGGGCCAGAGACGGTTC+AGG + chr1.1:45479436-45479455 MS.gene056897:CDS 60.0%
!! GTACCCCAGCGGTATCGGTT+GGG - chr1.1:45481210-45481229 None:intergenic 60.0%
!! TGCGCTCGGTGTTCCACAAG+TGG + chr1.1:45482163-45482182 MS.gene056897:CDS 60.0%
!! TGGCGGGCTTATTGCACCGA+CGG + chr1.1:45480448-45480467 MS.gene056897:CDS 60.0%
!! TGTACCCCAGCGGTATCGGT+TGG - chr1.1:45481211-45481230 None:intergenic 60.0%
ACCGCTGGGGTACACCTTCG+GGG + chr1.1:45481217-45481236 MS.gene056897:intron 65.0%
! ACCCCGAAGGTGTACCCCAG+CGG - chr1.1:45481221-45481240 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 45479154 45482465 45479154 ID=MS.gene056897
chr1.1 mRNA 45479154 45482465 45479154 ID=MS.gene056897.t1;Parent=MS.gene056897
chr1.1 exon 45479154 45479323 45479154 ID=MS.gene056897.t1.exon1;Parent=MS.gene056897.t1
chr1.1 CDS 45479154 45479323 45479154 ID=cds.MS.gene056897.t1;Parent=MS.gene056897.t1
chr1.1 exon 45479421 45479538 45479421 ID=MS.gene056897.t1.exon2;Parent=MS.gene056897.t1
chr1.1 CDS 45479421 45479538 45479421 ID=cds.MS.gene056897.t1;Parent=MS.gene056897.t1
chr1.1 exon 45479952 45480074 45479952 ID=MS.gene056897.t1.exon3;Parent=MS.gene056897.t1
chr1.1 CDS 45479952 45480074 45479952 ID=cds.MS.gene056897.t1;Parent=MS.gene056897.t1
chr1.1 exon 45480383 45480469 45480383 ID=MS.gene056897.t1.exon4;Parent=MS.gene056897.t1
chr1.1 CDS 45480383 45480469 45480383 ID=cds.MS.gene056897.t1;Parent=MS.gene056897.t1
chr1.1 exon 45481703 45481779 45481703 ID=MS.gene056897.t1.exon5;Parent=MS.gene056897.t1
chr1.1 CDS 45481703 45481779 45481703 ID=cds.MS.gene056897.t1;Parent=MS.gene056897.t1
chr1.1 exon 45481911 45482038 45481911 ID=MS.gene056897.t1.exon6;Parent=MS.gene056897.t1
chr1.1 CDS 45481911 45482038 45481911 ID=cds.MS.gene056897.t1;Parent=MS.gene056897.t1
chr1.1 exon 45482152 45482288 45482152 ID=MS.gene056897.t1.exon7;Parent=MS.gene056897.t1
chr1.1 CDS 45482152 45482288 45482152 ID=cds.MS.gene056897.t1;Parent=MS.gene056897.t1
chr1.1 exon 45482388 45482465 45482388 ID=MS.gene056897.t1.exon8;Parent=MS.gene056897.t1
chr1.1 CDS 45482388 45482465 45482388 ID=cds.MS.gene056897.t1;Parent=MS.gene056897.t1
Gene Sequence

>MS.gene056897

ATGAATACTTTCTCTCCTTCCTCCACAATTCTACCTTACCCTTCACTTTCCAAAAACTCCATTTTCTTTGCCCCTTTTAAAGGTAAAACCAACCAATTTTCTTTTTCTAAGTCAAGGATAATTGCGTGCTCTTCTCCACAGGATGCAGGCTCCAATGAAATCACACCAAAGTTAGTTTTTTTTTTTGCTTATTGGGTGTCTTTAATTTCATTCAAAATTTAAACTTTGCAACTGGTTTGATGAAAAAATTTGTTTTTTTTTTATCAGCAACTTTTGCATTATTGAAGGGCCAGAGACGGTTCAGGATTTTGTTCAGATGCAGGTGCAGGAAATTCAAGATAATATAAAGAGTAGACGCAATAAAATCTTTCTTCTTATGGAAGAGGTTAGTTTATATTCATCATACTTCATTAGATAGTGTCAATTTTCATTCATATTATGGTTTTGTTAGATAAACAACTTAATTAAGCGCTTATAGCATAAACGTGTATCTTATCATATAAGTGCTTATGTATAAGCTAGTTCTATATCAAAAGATACAATAAAATCAAACTGTTTTCATGTAACTTATAAGCGGTTTTCGTAAGCTATCCTGGAGTACTTATGAAAATAAGCTGAAAATAACTTATGAAATTTATAGATATGTCATAAGCCGTTTTCATAAGTTATTCAAAATAGTTTCACACGTACTATGCAAGTAAATAAGCTGAAATAAGTCAATCAAAACAACCCGCTTATATCTTATAGTAAGTTAGCAACACACTTTTGATAATGACTAATGAGAAATGAGTATGGCAGGTTAGGAGATTGCGTGTGCAGCAGCGGCTAAGAAGTATACAAAGAGCTTTTAGTGAAGAGGGAGAGGAAGATGCAAATGAGATGCCGGAAATTCCATCATCTATTCCTTTTCTTCCTCATGTGGTGAGTTTTAAAACCTTGTTTTGATTAAGCTATTGGTGTTGAATTGTTGACTAAACCATACCAATATCTTTAAGTACTGAAGAAGCTTATTCACATGAATATATGATAGTTTAAATAAGACACTTAAGGTTTTTCATATTGAATTTTTTTGTTTTGTTAAAACAGCTTGTGATGAACATCTTTTCTTTTTTGAGTCATTTTTAATAACATCCTTTTGTTTCTCATCTATCGAATGCTTGATGTATTCGAAATGAGAGCATTTGGCATTTTTTATCTTAACTAATTCCGTGCTTTTCGGATTGAAGTAGACACCCAACACTTTGAAGAAGCTCTATCTAACAGGCGCATCATTCATATCTGCAATAATTGTATTTGGCGGGCTTATTGCACCGACGGTAATTTTATTGTCTTATTCTTTTTACATCTATGTCAAATAATCATCCTAAATTACTTGGGTGTCTGTTAATAGATCATATTATTATCTCTATTTGTCATAGAAATGTGACATCCTTTGTTACCCTTATTAAGTATCACTATGTTAAGTTTAAATCTGGCTTGGATTTTGGCATTTCACTATTGATCCTTGGGTTTAATTCTCACTTTACCATGTTGACTCATACTTTTATCGATTGTGCATCCTACTATAGTTTGCTACTGATTTTATAAAAAAAGTTACTTCTTTCTTTTGCATGAGAATCATTTATCTGTTGCATAAATGTGTTCCTTTCATCTTAAATGATAAGACAATTTTGAGAATGGATAAAGGGAAGTGATTGAAAGATAGAAATTTTGACAATTTAAATTTTGGGGTGCAAGTTTAGTTTAAGGATTACATGTTTAGATGTGCTAACTTGAATTTATGATACCTCCTTTCCAAGAGCAAATGATTAAAAGATAAGTGTTTCTCAACTTCCCTTTATGCTATTTTCTATAATTAGTAGTACATAAAGTATAGGAACTTTGTAAAATGAGAGGGTGGAATAATTCATGTAGTATAAGATGACCTTGATTTCAAAAACTTTTTATTTTTTTATAGGCAAATGTTAGTGATTAATTTGTTAGGTAAAAAAAGAATTTGTTAGCACAGTAGGGGTCAAAACCTGGGTCCTCCTTCTTAATACTCCTTTAGAGTCCCAACCGATACCGCTGGGGTACACCTTCGGGGTCTGATTTATGAAACTGTGACTTTAGATGAAATGATTCATAAATAGAGAAATTTAGAGTGTGTTTGGATGAGGTAATTTGGAAAGTTTGAAGAATTTAAAATTCTAGGCAATTTACCTCTAAGTATTTGAATTCCCTCATAACATTACATTTCCTCAACATTACATTACATTTCCTCAACATTACATTACATTCCCTCATCCAAACAATGGAATTCACCTCAAAGTATTTGAATTCCCTCATAACATTACATTCCCTCAAAACATTCCCCCATCCAAACACACTAGGGTGAAGCATAGAGAAACATTGAGCTAGCCTATTCACTCACATTTATTTACCTTTAATTTAAGTGGTCTCGTAAAAGTATTTTTTGTCACTTTGATAGTTTTCATATGCGTTATTTTTGTCGATCTTGACCATGATCTACATTCATTTCAAATATTAAATCCTTATTTTAATGGCAGCTGGAGCTGAAATTGGGTATAGGTGGTACGTCATATGAGGATTTCATAAGAAGCTTGCATTTGCCTTTGCAACTAAGGTATGCTATTCTTCGATTAACTTAATCAGTTCGTGATTTCCGTTTATCAGAAAGAAAGAAATTGTTGTGTTATGAACAACATATTTACTTGATCAATGCCTGATCACAATTTGTTTGGTTCATGAATCCAGTCAAGTTGACCCAATTGTGGCATCCTTTTCGGGTGGAGCAGTTGGCGTGATTTCAGTACTGATGTTAATTGAGGCTAATAATGTTGAGCAACAAGAGAAAACAAGGTGCAAGTATTGCCTTGGAACTGGTATGTTTCTACACTGAAGTTGAACTGGTTCATTTCAGACGTATTTCTTGTTTGATTCCTTTCTATTCTTTCTAGAATTGTGTACTTTATAAAATTTGTAATTTTATGGACAGGTTACTTGGCTTGCGCTCGGTGTTCCACAAGTGGTGTATGTTTGAACATTAATCCGATTTCGGCATCTGGTACTTCTGTTAGACCCCTGCAGGTTCCTACAACGACAAGGTGTCCAAATTGCTCTGGTGCTGGAAAGGTACACAACCCTAATTCTTGCCGATATATGCAACTGTTTAATTTTTTTGATTGCAGTTAGTAGTCGATAAACTAATCGTCATATGTGTTTTTTGTTTAGGTTATGTGTCCAACCTGCCTTTGCACTGGGATGAAGATGGCAAGTGAACATGACCTGAGAATTGATCCATTTGACTAA

Protein sequence

>MS.gene056897.t1

MNTFSPSSTILPYPSLSKNSIFFAPFKGKTNQFSFSKSRIIACSSPQDAGSNEITPNNFCIIEGPETVQDFVQMQVQEIQDNIKSRRNKIFLLMEEVRRLRVQQRLRSIQRAFSEEGEEDANEMPEIPSSIPFLPHVTPNTLKKLYLTGASFISAIIVFGGLIAPTLELKLGIGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISVLMLIEANNVEQQEKTRCKYCLGTGYLACARCSTSGVCLNINPISASGTSVRPLQVPTTTRCPNCSGAGKVMCPTCLCTGMKMASEHDLRIDPFD