Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79072.t1 | XP_013459167.1 | 97.3 | 365 | 10 | 0 | 1 | 365 | 1 | 365 | 1.50E-199 | 705.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79072.t1 | A0A072V4V0 | 97.3 | 365 | 10 | 0 | 1 | 365 | 1 | 365 | 1.1e-199 | 705.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene79072 | 0.819866 | 9.27E-53 | -1.69E-46 |
| MS.gene052367 | MS.gene79072 | 0.827236 | 1.75E-54 | -1.69E-46 |
| MS.gene053416 | MS.gene79072 | 0.804055 | 2.60E-49 | -1.69E-46 |
| MS.gene053417 | MS.gene79072 | 0.807054 | 6.10E-50 | -1.69E-46 |
| MS.gene055578 | MS.gene79072 | 0.809863 | 1.53E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene79072 | 0.83006 | 3.63E-55 | -1.69E-46 |
| MS.gene060473 | MS.gene79072 | 0.846109 | 2.67E-59 | -1.69E-46 |
| MS.gene060565 | MS.gene79072 | 0.833343 | 5.63E-56 | -1.69E-46 |
| MS.gene06057 | MS.gene79072 | 0.801916 | 7.18E-49 | -1.69E-46 |
| MS.gene061099 | MS.gene79072 | 0.819386 | 1.19E-52 | -1.69E-46 |
| MS.gene061260 | MS.gene79072 | 0.829244 | 5.74E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79072.t1 | MTR_3g028600 | 97.260 | 365 | 10 | 0 | 1 | 365 | 1 | 365 | 0.0 | 720 |
| MS.gene79072.t1 | MTR_7g092270 | 34.926 | 272 | 133 | 8 | 1 | 246 | 1 | 254 | 2.59e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79072.t1 | AT3G52110 | 43.968 | 373 | 155 | 16 | 1 | 361 | 1 | 331 | 3.22e-71 | 226 |
| MS.gene79072.t1 | AT3G52110 | 40.898 | 401 | 155 | 16 | 1 | 361 | 1 | 359 | 2.03e-67 | 217 |
| MS.gene79072.t1 | AT3G52110 | 43.452 | 336 | 121 | 13 | 1 | 297 | 1 | 306 | 9.45e-61 | 199 |
| MS.gene79072.t1 | AT3G52110 | 45.172 | 290 | 119 | 11 | 1 | 280 | 1 | 260 | 2.30e-57 | 187 |
Find 74 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAATCCTCTGCTGTTT+TGG | 0.155399 | 3.1:+20617038 | None:intergenic |
| TGAAAACCAAAATCCGAATT+TGG | 0.214237 | 3.1:-20616312 | MS.gene79072:CDS |
| CAAAAGCCTTGGACATGTTT+TGG | 0.224647 | 3.1:-20614599 | MS.gene79072:CDS |
| GAGTAACCAAATTCGGATTT+TGG | 0.233277 | 3.1:+20616306 | None:intergenic |
| TTGGACGGGATGTGTGTTAA+AGG | 0.236511 | 3.1:-20615927 | MS.gene79072:CDS |
| GATACAAGTACCTTCTAATT+TGG | 0.250372 | 3.1:+20616514 | None:intergenic |
| TGACTTGATCAAAGCCTTCT+TGG | 0.260330 | 3.1:+20616271 | None:intergenic |
| TGAATCTGAATTTATCATCT+TGG | 0.317982 | 3.1:+20616345 | None:intergenic |
| CAGATCACCAAGTCCTTTCA+AGG | 0.337664 | 3.1:-20617016 | MS.gene79072:intron |
| AATTGAGGAGTAACCAAATT+CGG | 0.341390 | 3.1:+20616299 | None:intergenic |
| AAGGAAACCATTGCTTGAAA+TGG | 0.343999 | 3.1:-20615964 | MS.gene79072:CDS |
| TCTTCTTCTTTAATCTCTAC+AGG | 0.347537 | 3.1:+20616056 | None:intergenic |
| GAATCTGAATTTATCATCTT+GGG | 0.347711 | 3.1:+20616346 | None:intergenic |
| TTCTCCAAGTCAAGAGTTAT+AGG | 0.377448 | 3.1:+20615283 | None:intergenic |
| AGCTTCATCATCATTGTTGT+TGG | 0.398451 | 3.1:+20617459 | None:intergenic |
| AGGTTCCAGATCCCGGCTAA+TGG | 0.435543 | 3.1:-20615161 | MS.gene79072:intron |
| TGTTGTTGGTGTTGTGATTG+AGG | 0.435893 | 3.1:+20617473 | None:intergenic |
| ACATACCATTAGCCGGGATC+TGG | 0.436592 | 3.1:+20615156 | None:intergenic |
| TCTGTGATTTGATTCAGAAT+AGG | 0.438456 | 3.1:+20616146 | None:intergenic |
| CTCTTGACTTGGAGAATGTA+AGG | 0.438576 | 3.1:-20615276 | MS.gene79072:CDS |
| TGGATAGAAGAGAGAAAGAA+AGG | 0.449130 | 3.1:-20615983 | MS.gene79072:CDS |
| AGGAAACCATTGCTTGAAAT+GGG | 0.454113 | 3.1:-20615963 | MS.gene79072:CDS |
| GAAAGAGTTGATTTCAATGA+AGG | 0.454599 | 3.1:+20616194 | None:intergenic |
| GTTGTTGGTGTTGTGATTGA+GGG | 0.455031 | 3.1:+20617474 | None:intergenic |
| TTGAAAACCTTGAAAGGACT+TGG | 0.458556 | 3.1:+20617009 | None:intergenic |
| GGACAAGAAGTCAACAAACT+TGG | 0.464269 | 3.1:+20617495 | None:intergenic |
| TGGACGGGATGTGTGTTAAA+GGG | 0.464596 | 3.1:-20615926 | MS.gene79072:CDS |
| CATGCCTATAACTCTTGACT+TGG | 0.473248 | 3.1:-20615287 | MS.gene79072:CDS |
| GCCTTACCCATTTCAAGCAA+TGG | 0.473594 | 3.1:+20615957 | None:intergenic |
| GCCTTCTTGGACTTAAATTG+AGG | 0.474331 | 3.1:+20616284 | None:intergenic |
| AGAGACTGGCATTAAGAGCT+AGG | 0.485226 | 3.1:-20616106 | MS.gene79072:CDS |
| CCTCAAAAGGTTCCAGATCC+CGG | 0.489613 | 3.1:-20615168 | MS.gene79072:CDS |
| TCCTCAATTTAAGTCCAAGA+AGG | 0.490589 | 3.1:-20616285 | MS.gene79072:CDS |
| CAAGTGGTGACCAAATTAGA+AGG | 0.496358 | 3.1:-20616524 | MS.gene79072:intron |
| AACTCTTTCAAAGCGTTCAC+CGG | 0.498786 | 3.1:+20616005 | None:intergenic |
| CTTCTAATTTGGTCACCACT+TGG | 0.502583 | 3.1:+20616525 | None:intergenic |
| CTTCTTCTTTAATCTCTACA+GGG | 0.508990 | 3.1:+20616057 | None:intergenic |
| TGGAACCCGCGAAAATCGAT+TGG | 0.518768 | 3.1:-20617573 | MS.gene79072:CDS |
| CTGCAATGAATTGAAGAGAC+TGG | 0.520098 | 3.1:-20616120 | MS.gene79072:CDS |
| GGTGAACGCTTTGAAAGAGT+TGG | 0.520844 | 3.1:-20616003 | MS.gene79072:CDS |
| TGTAGAGATTAAAGAAGAAG+AGG | 0.521848 | 3.1:-20616054 | MS.gene79072:CDS |
| TTGGGGAGAAGATGATGAAA+GGG | 0.527318 | 3.1:+20616364 | None:intergenic |
| TGGAAGAGAAACAAAAGCCT+TGG | 0.531913 | 3.1:-20614610 | MS.gene79072:CDS |
| ACCATTGCTTGAAATGGGTA+AGG | 0.532730 | 3.1:-20615958 | MS.gene79072:CDS |
| AATGGGTAAGGCTGAGAGGT+TGG | 0.540424 | 3.1:-20615946 | MS.gene79072:CDS |
| TGGAGAATGTAAGGCAAAAG+AGG | 0.545027 | 3.1:-20615267 | MS.gene79072:CDS |
| GGTAAGGCTGAGAGGTTGGA+CGG | 0.549391 | 3.1:-20615942 | MS.gene79072:CDS |
| ACAACAATGATGATGAAGCT+TGG | 0.550311 | 3.1:-20617456 | MS.gene79072:CDS |
| CAAGAATTGAAAACCTTGAA+AGG | 0.551181 | 3.1:+20617003 | None:intergenic |
| GAGATGGGAAAATCAAGAGA+AGG | 0.552016 | 3.1:-20616394 | MS.gene79072:CDS |
| GGTTGGGACATACCATTAGC+CGG | 0.552393 | 3.1:+20615149 | None:intergenic |
| CTTGGGGAGAAGATGATGAA+AGG | 0.552832 | 3.1:+20616363 | None:intergenic |
| GAGACTGGCATTAAGAGCTA+GGG | 0.555156 | 3.1:-20616105 | MS.gene79072:CDS |
| AATCTGAATTTATCATCTTG+GGG | 0.559370 | 3.1:+20616347 | None:intergenic |
| CAGCTTGATAATGTTGTGCA+AGG | 0.574727 | 3.1:+20614567 | None:intergenic |
| GACAAGAAGTCAACAAACTT+GGG | 0.580519 | 3.1:+20617496 | None:intergenic |
| GTTGGGACATACCATTAGCC+GGG | 0.583044 | 3.1:+20615150 | None:intergenic |
| GTAAGGCTGAGAGGTTGGAC+GGG | 0.591527 | 3.1:-20615941 | MS.gene79072:CDS |
| CAACAAACTTGGGTGCGTTG+AGG | 0.603580 | 3.1:+20617506 | None:intergenic |
| GCAAAACAAGGAAGTTGCAA+AGG | 0.614584 | 3.1:-20614673 | MS.gene79072:CDS |
| AGATGGGAAAATCAAGAGAA+GGG | 0.615803 | 3.1:-20616393 | MS.gene79072:CDS |
| AGGGTTATCATGCAGGAGAG+AGG | 0.624181 | 3.1:-20614714 | MS.gene79072:intron |
| GAAGAACCAAAACATGTCCA+AGG | 0.624877 | 3.1:+20614593 | None:intergenic |
| TTATCAGAAAATCTTCCAAG+TGG | 0.629968 | 3.1:-20616540 | MS.gene79072:CDS |
| GGAGAATGTAAGGCAAAAGA+GGG | 0.637079 | 3.1:-20615266 | MS.gene79072:CDS |
| TTTCAAAGCGTTCACCGGCG+AGG | 0.640910 | 3.1:+20616010 | None:intergenic |
| TGGGGAGAAGATGATGAAAG+GGG | 0.644916 | 3.1:+20616365 | None:intergenic |
| TAAAGAAGTTGAGCAAAACA+AGG | 0.647922 | 3.1:-20614685 | MS.gene79072:CDS |
| CAATCACCCCAAAACAGCAG+AGG | 0.670196 | 3.1:-20617046 | MS.gene79072:CDS |
| TTGAAATGGGTAAGGCTGAG+AGG | 0.692818 | 3.1:-20615950 | MS.gene79072:CDS |
| GGAGAAGATGATGAAAGGGG+TGG | 0.706516 | 3.1:+20616368 | None:intergenic |
| TGTGCACGAGAAGACCTCGC+CGG | 0.712375 | 3.1:-20616024 | MS.gene79072:CDS |
| CACATTGCAAGACAGTACAG+AGG | 0.746431 | 3.1:-20616219 | MS.gene79072:CDS |
| ATTGTGCAGAAGACCTGATG+AGG | 0.747642 | 3.1:-20615317 | MS.gene79072:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTTTGATTTTTATTAA+TGG | - | chr3.1:20614829-20614848 | MS.gene79072:intron | 10.0% |
| !!! | AAGTTTTGATTTTTATTAAT+GGG | - | chr3.1:20614830-20614849 | MS.gene79072:intron | 10.0% |
| !!! | AAGTTTTGATTTTTATTAAT+TGG | - | chr3.1:20614830-20614849 | MS.gene79072:intron | 10.0% |
| !!! | AGTTTTGATTTTTATTAATT+GGG | - | chr3.1:20614996-20615015 | MS.gene79072:intron | 10.0% |
| !!! | ATAGTTTAGATTTTAATTAA+TGG | - | chr3.1:20615025-20615044 | MS.gene79072:intron | 10.0% |
| !!! | TAGTTTAGATTTTAATTAAT+GGG | - | chr3.1:20615026-20615045 | MS.gene79072:intron | 10.0% |
| !! | CATTAAACTATTCATATTTA+TGG | - | chr3.1:20617019-20617038 | MS.gene79072:CDS | 15.0% |
| !! | TATGAATAGTTTAATGTTAT+AGG | + | chr3.1:20617015-20617034 | None:intergenic | 15.0% |
| !!! | AAAGTTTGGATTTTTATTAA+TGG | - | chr3.1:20614912-20614931 | MS.gene79072:intron | 15.0% |
| !!! | AAGTTTGGATTTTTATTAAT+GGG | - | chr3.1:20614913-20614932 | MS.gene79072:intron | 15.0% |
| !!! | AGATTTTCTGATAAATAAAA+TGG | + | chr3.1:20615594-20615613 | None:intergenic | 15.0% |
| !!! | CTTTCTATTAATTTTTGTTT+TGG | - | chr3.1:20615541-20615560 | MS.gene79072:intron | 15.0% |
| !! | AAAAATATTACAATCTCTGA+TGG | - | chr3.1:20617510-20617529 | MS.gene79072:CDS | 20.0% |
| !! | AAAAATGCAAAATCATGAAA+AGG | + | chr3.1:20614741-20614760 | None:intergenic | 20.0% |
| !! | AAAATGCAAAATCATGAAAA+GGG | + | chr3.1:20614740-20614759 | None:intergenic | 20.0% |
| !! | AAACTATTTAATGTGTCAAT+TGG | - | chr3.1:20617252-20617271 | MS.gene79072:intron | 20.0% |
| !! | AACAAAATTAGAAATGTAGT+AGG | + | chr3.1:20615163-20615182 | None:intergenic | 20.0% |
| !! | AAGTAACATAGGAAAAAAAT+TGG | + | chr3.1:20615271-20615290 | None:intergenic | 20.0% |
| !! | AATAGTTTAATGTTATAGGT+TGG | + | chr3.1:20617011-20617030 | None:intergenic | 20.0% |
| !! | AGTAACATAGGAAAAAAATT+GGG | + | chr3.1:20615270-20615289 | None:intergenic | 20.0% |
| !! | AGTGAAACATTACAAATATT+TGG | - | chr3.1:20616651-20616670 | MS.gene79072:intron | 20.0% |
| !! | ATAGTTTAATGTTATAGGTT+GGG | + | chr3.1:20617010-20617029 | None:intergenic | 20.0% |
| !! | ATCTATCAATGAATAACTTT+AGG | + | chr3.1:20617117-20617136 | None:intergenic | 20.0% |
| !! | CAAAAAAACAGAAAAAACAA+AGG | + | chr3.1:20615355-20615374 | None:intergenic | 20.0% |
| !! | GCATAACTTATACAAATTAT+TGG | - | chr3.1:20616679-20616698 | MS.gene79072:intron | 20.0% |
| !! | TATACAAAAATGATTAACCA+AGG | + | chr3.1:20616795-20616814 | None:intergenic | 20.0% |
| !! | TTTAATATTGCTATAGAGAT+GGG | - | chr3.1:20615731-20615750 | MS.gene79072:intron | 20.0% |
| !!! | ATAAAGAAACACAGATTTTA+AGG | + | chr3.1:20616271-20616290 | None:intergenic | 20.0% |
| !!! | ATAGTTTGAGCTTTTAATTA+TGG | - | chr3.1:20615187-20615206 | MS.gene79072:CDS | 20.0% |
| !!! | ATATTGCATTTTTGTCAATT+GGG | - | chr3.1:20614965-20614984 | MS.gene79072:intron | 20.0% |
| !!! | ATTTTGCATTTTTCTCAATT+GGG | - | chr3.1:20614748-20614767 | MS.gene79072:intron | 20.0% |
| !!! | TAAAGAAACACAGATTTTAA+GGG | + | chr3.1:20616270-20616289 | None:intergenic | 20.0% |
| !!! | TATATTGCATTTTTGTCAAT+TGG | - | chr3.1:20614964-20614983 | MS.gene79072:intron | 20.0% |
| !!! | TTATCTTTTTATAACTTCAG+TGG | - | chr3.1:20616707-20616726 | MS.gene79072:intron | 20.0% |
| ! | AAATGCAAAATCATGAAAAG+GGG | + | chr3.1:20614739-20614758 | None:intergenic | 25.0% |
| ! | AATATATCGCTCTCTTAATA+TGG | + | chr3.1:20617168-20617187 | None:intergenic | 25.0% |
| ! | AATCTGAATTTATCATCTTG+GGG | + | chr3.1:20615796-20615815 | None:intergenic | 25.0% |
| ! | ACAAGCATAAAAAGTAACAT+AGG | + | chr3.1:20615282-20615301 | None:intergenic | 25.0% |
| ! | AGCAAAATCTCAAATTTCTA+TGG | + | chr3.1:20615679-20615698 | None:intergenic | 25.0% |
| ! | GAATCTGAATTTATCATCTT+GGG | + | chr3.1:20615797-20615816 | None:intergenic | 25.0% |
| ! | GTAACATAGGAAAAAAATTG+GGG | + | chr3.1:20615269-20615288 | None:intergenic | 25.0% |
| ! | GTTTAATATTGCTATAGAGA+TGG | - | chr3.1:20615730-20615749 | MS.gene79072:intron | 25.0% |
| ! | TCTCAAATTTCTATGGAAAA+AGG | + | chr3.1:20615672-20615691 | None:intergenic | 25.0% |
| ! | TGAATCTGAATTTATCATCT+TGG | + | chr3.1:20615798-20615817 | None:intergenic | 25.0% |
| ! | TGTAGATACAACTAAATCAA+AGG | + | chr3.1:20616739-20616758 | None:intergenic | 25.0% |
| !! | AATCTAGGTTTAAGTTAGAT+GGG | - | chr3.1:20616619-20616638 | MS.gene79072:intron | 25.0% |
| !! | AGATTGCATTTTTCTCAATT+AGG | - | chr3.1:20614800-20614819 | MS.gene79072:intron | 25.0% |
| !! | ATGGATTATTTACAAGACAA+TGG | - | chr3.1:20617038-20617057 | MS.gene79072:CDS | 25.0% |
| !! | GATTTTGCATTTTTCTCAAT+TGG | - | chr3.1:20614747-20614766 | MS.gene79072:intron | 25.0% |
| !! | TGATTGCATTTTTCACAATT+GGG | - | chr3.1:20614883-20614902 | MS.gene79072:intron | 25.0% |
| !! | TTGATTGCATTTTTCACAAT+TGG | - | chr3.1:20614882-20614901 | MS.gene79072:intron | 25.0% |
| !!! | ATATTTTTGTTGTTTTGTGC+TGG | + | chr3.1:20617498-20617517 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTTCCTTTTTTGA+AGG | - | chr3.1:20615560-20615579 | MS.gene79072:intron | 25.0% |
| AATTGAGGAGTAACCAAATT+CGG | + | chr3.1:20615844-20615863 | None:intergenic | 30.0% | |
| ACACTAACACTTTAGTTAGA+AGG | - | chr3.1:20616434-20616453 | MS.gene79072:intron | 30.0% | |
| ACCACATTTAATGTGTCAAT+TGG | - | chr3.1:20617293-20617312 | MS.gene79072:intron | 30.0% | |
| CAAGAATTGAAAACCTTGAA+AGG | + | chr3.1:20615140-20615159 | None:intergenic | 30.0% | |
| CAAGGAAATAGTACAAGAAT+TGG | + | chr3.1:20616777-20616796 | None:intergenic | 30.0% | |
| CAATTCTTGTACTATTTCCT+TGG | - | chr3.1:20616775-20616794 | MS.gene79072:intron | 30.0% | |
| CAGCACTTAAACTAAGATAA+TGG | + | chr3.1:20616549-20616568 | None:intergenic | 30.0% | |
| CTTCTTCTTTAATCTCTACA+GGG | + | chr3.1:20616086-20616105 | None:intergenic | 30.0% | |
| GATACAAGTACCTTCTAATT+TGG | + | chr3.1:20615629-20615648 | None:intergenic | 30.0% | |
| TAAAGAAGTTGAGCAAAACA+AGG | - | chr3.1:20617455-20617474 | MS.gene79072:CDS | 30.0% | |
| TCCAATTGACACATTAAATG+TGG | + | chr3.1:20617297-20617316 | None:intergenic | 30.0% | |
| TCGATTGGAAAAATCTAGAA+TGG | - | chr3.1:20614582-20614601 | MS.gene79072:CDS | 30.0% | |
| TCTGTGATTTGATTCAGAAT+AGG | + | chr3.1:20615997-20616016 | None:intergenic | 30.0% | |
| TCTTCTTCTTTAATCTCTAC+AGG | + | chr3.1:20616087-20616106 | None:intergenic | 30.0% | |
| TGAAAACCAAAATCCGAATT+TGG | - | chr3.1:20615828-20615847 | MS.gene79072:intron | 30.0% | |
| TGTAGAGATTAAAGAAGAAG+AGG | - | chr3.1:20616086-20616105 | MS.gene79072:CDS | 30.0% | |
| TTATCAGAAAATCTTCCAAG+TGG | - | chr3.1:20615600-20615619 | MS.gene79072:intron | 30.0% | |
| TTTAATGTGTCAATTGGAAG+AGG | - | chr3.1:20617258-20617277 | MS.gene79072:intron | 30.0% | |
| TTTACGAGACAAATCAATGT+AGG | - | chr3.1:20616369-20616388 | MS.gene79072:CDS | 30.0% | |
| ! | CAATCTAGGTTTAAGTTAGA+TGG | - | chr3.1:20616618-20616637 | MS.gene79072:intron | 30.0% |
| ! | CATTACTACTTCTCTAAAGA+GGG | + | chr3.1:20617383-20617402 | None:intergenic | 30.0% |
| ! | GAAAAAAGATCTGATGATGA+GGG | - | chr3.1:20617407-20617426 | MS.gene79072:intron | 30.0% |
| ! | GAAAGAGTTGATTTCAATGA+AGG | + | chr3.1:20615949-20615968 | None:intergenic | 30.0% |
| ! | TGAAAAAAGATCTGATGATG+AGG | - | chr3.1:20617406-20617425 | MS.gene79072:intron | 30.0% |
| !! | ATTTTTCCAATCGATTTTCG+CGG | + | chr3.1:20614576-20614595 | None:intergenic | 30.0% |
| !! | CAATTGGGTTTGTTAAAGTT+TGG | - | chr3.1:20614898-20614917 | MS.gene79072:intron | 30.0% |
| !! | CGAAAAATTTGTTTTCGAGA+CGG | - | chr3.1:20615971-20615990 | MS.gene79072:CDS | 30.0% |
| !! | TAGTTCTGAGCTTCTATTTA+TGG | - | chr3.1:20615307-20615326 | MS.gene79072:CDS | 30.0% |
| AAGGAAACCATTGCTTGAAA+TGG | - | chr3.1:20616176-20616195 | MS.gene79072:CDS | 35.0% | |
| ACAAATCAATGTAGGACGTA+TGG | - | chr3.1:20616377-20616396 | MS.gene79072:CDS | 35.0% | |
| AGATGGGAAAATCAAGAGAA+GGG | - | chr3.1:20615747-20615766 | MS.gene79072:intron | 35.0% | |
| AGCTTCATCATCATTGTTGT+TGG | + | chr3.1:20614684-20614703 | None:intergenic | 35.0% | |
| AGGAAACCATTGCTTGAAAT+GGG | - | chr3.1:20616177-20616196 | MS.gene79072:CDS | 35.0% | |
| GACAAGAAGTCAACAAACTT+GGG | + | chr3.1:20614647-20614666 | None:intergenic | 35.0% | |
| TAGTACAAGAATTGGAGTAC+TGG | + | chr3.1:20616769-20616788 | None:intergenic | 35.0% | |
| TCCTCAATTTAAGTCCAAGA+AGG | - | chr3.1:20615855-20615874 | MS.gene79072:intron | 35.0% | |
| TGGATAGAAGAGAGAAAGAA+AGG | - | chr3.1:20616157-20616176 | MS.gene79072:CDS | 35.0% | |
| TTCTCCAAGTCAAGAGTTAT+AGG | + | chr3.1:20616860-20616879 | None:intergenic | 35.0% | |
| TTGAAAACCTTGAAAGGACT+TGG | + | chr3.1:20615134-20615153 | None:intergenic | 35.0% | |
| TTGTTCTCAGCTTCTAACTT+TGG | - | chr3.1:20615484-20615503 | MS.gene79072:intron | 35.0% | |
| ! | ACAACAATGATGATGAAGCT+TGG | - | chr3.1:20614684-20614703 | MS.gene79072:CDS | 35.0% |
| ! | AGTACAAGAATTGGAGTACT+GGG | + | chr3.1:20616768-20616787 | None:intergenic | 35.0% |
| ! | CCATTACTACTTCTCTAAAG+AGG | + | chr3.1:20617384-20617403 | None:intergenic | 35.0% |
| ! | CCTCTTTAGAGAAGTAGTAA+TGG | - | chr3.1:20617381-20617400 | MS.gene79072:intron | 35.0% |
| ! | GAGTAACCAAATTCGGATTT+TGG | + | chr3.1:20615837-20615856 | None:intergenic | 35.0% |
| ! | GTTTTATAGGTTGCTAAGGT+AGG | - | chr3.1:20616595-20616614 | MS.gene79072:intron | 35.0% |
| ! | TAGAAGGCATGTCTTAAATC+TGG | - | chr3.1:20616450-20616469 | MS.gene79072:intron | 35.0% |
| !! | TTTTTCCAATCGATTTTCGC+GGG | + | chr3.1:20614575-20614594 | None:intergenic | 35.0% |
| !!! | AGAAAATCCTCTGCTGTTTT+GGG | + | chr3.1:20615104-20615123 | None:intergenic | 35.0% |
| !!! | TGCTAGTTTTCAACTTTAGC+TGG | - | chr3.1:20615219-20615238 | MS.gene79072:CDS | 35.0% |
| AACCTATAAAACACCGACAC+TGG | + | chr3.1:20616587-20616606 | None:intergenic | 40.0% | |
| ACCATTGCTTGAAATGGGTA+AGG | - | chr3.1:20616182-20616201 | MS.gene79072:CDS | 40.0% | |
| ATAAAACACCGACACTGGTA+TGG | + | chr3.1:20616582-20616601 | None:intergenic | 40.0% | |
| CAAGTGGTGACCAAATTAGA+AGG | - | chr3.1:20615616-20615635 | MS.gene79072:intron | 40.0% | |
| CATGCCTATAACTCTTGACT+TGG | - | chr3.1:20616853-20616872 | MS.gene79072:intron | 40.0% | |
| CTGCAATGAATTGAAGAGAC+TGG | - | chr3.1:20616020-20616039 | MS.gene79072:CDS | 40.0% | |
| CTTCTAATTTGGTCACCACT+TGG | + | chr3.1:20615618-20615637 | None:intergenic | 40.0% | |
| GAAGAACCAAAACATGTCCA+AGG | + | chr3.1:20617550-20617569 | None:intergenic | 40.0% | |
| GAGATGGGAAAATCAAGAGA+AGG | - | chr3.1:20615746-20615765 | MS.gene79072:intron | 40.0% | |
| GATTTCACGAGCTGACATTA+AGG | - | chr3.1:20617134-20617153 | MS.gene79072:intron | 40.0% | |
| GCAAAACAAGGAAGTTGCAA+AGG | - | chr3.1:20617467-20617486 | MS.gene79072:CDS | 40.0% | |
| GCCTTCTTGGACTTAAATTG+AGG | + | chr3.1:20615859-20615878 | None:intergenic | 40.0% | |
| GGACAAGAAGTCAACAAACT+TGG | + | chr3.1:20614648-20614667 | None:intergenic | 40.0% | |
| GGACTTCTTGCCTTCAAAAA+AGG | + | chr3.1:20615573-20615592 | None:intergenic | 40.0% | |
| GGAGAATGTAAGGCAAAAGA+GGG | - | chr3.1:20616874-20616893 | MS.gene79072:intron | 40.0% | |
| TGACTTGATCAAAGCCTTCT+TGG | + | chr3.1:20615872-20615891 | None:intergenic | 40.0% | |
| TGGAAGAGAAACAAAAGCCT+TGG | - | chr3.1:20617530-20617549 | MS.gene79072:CDS | 40.0% | |
| TGGAGAATGTAAGGCAAAAG+AGG | - | chr3.1:20616873-20616892 | MS.gene79072:intron | 40.0% | |
| TTGGGGAGAAGATGATGAAA+GGG | + | chr3.1:20615779-20615798 | None:intergenic | 40.0% | |
| ! | AACTCTTTCAAAGCGTTCAC+CGG | + | chr3.1:20616138-20616157 | None:intergenic | 40.0% |
| ! | CAAAAGCCTTGGACATGTTT+TGG | - | chr3.1:20617541-20617560 | MS.gene79072:CDS | 40.0% |
| ! | CGGTGTTTTATAGGTTGCTA+AGG | - | chr3.1:20616591-20616610 | MS.gene79072:intron | 40.0% |
| !! | CAGCTTGATAATGTTGTGCA+AGG | + | chr3.1:20617576-20617595 | None:intergenic | 40.0% |
| !! | CTCTTGACTTGGAGAATGTA+AGG | - | chr3.1:20616864-20616883 | MS.gene79072:intron | 40.0% |
| !! | GAGAAAATCCTCTGCTGTTT+TGG | + | chr3.1:20615105-20615124 | None:intergenic | 40.0% |
| !! | GTTGTTGGTGTTGTGATTGA+GGG | + | chr3.1:20614669-20614688 | None:intergenic | 40.0% |
| !! | TGTTGTTGGTGTTGTGATTG+AGG | + | chr3.1:20614670-20614689 | None:intergenic | 40.0% |
| !!! | GAAAATCCTCTGCTGTTTTG+GGG | + | chr3.1:20615103-20615122 | None:intergenic | 40.0% |
| !!! | TACCAGTGTCGGTGTTTTAT+AGG | - | chr3.1:20616582-20616601 | MS.gene79072:intron | 40.0% |
| AATAACCCTACCCCCTCAAA+AGG | - | chr3.1:20616959-20616978 | MS.gene79072:intron | 45.0% | |
| AGAGACTGGCATTAAGAGCT+AGG | - | chr3.1:20616034-20616053 | MS.gene79072:CDS | 45.0% | |
| ATGTAACCACTCGCATGTGA+CGG | + | chr3.1:20616497-20616516 | None:intergenic | 45.0% | |
| ATTGTGCAGAAGACCTGATG+AGG | - | chr3.1:20616823-20616842 | MS.gene79072:intron | 45.0% | |
| CACATTGCAAGACAGTACAG+AGG | - | chr3.1:20615921-20615940 | MS.gene79072:CDS | 45.0% | |
| CAGATCACCAAGTCCTTTCA+AGG | - | chr3.1:20615124-20615143 | MS.gene79072:intron | 45.0% | |
| CTTGGGGAGAAGATGATGAA+AGG | + | chr3.1:20615780-20615799 | None:intergenic | 45.0% | |
| GAAAAACACTGAGGAGAAGG+AGG | + | chr3.1:20616929-20616948 | None:intergenic | 45.0% | |
| GAGACTGGCATTAAGAGCTA+GGG | - | chr3.1:20616035-20616054 | MS.gene79072:CDS | 45.0% | |
| GATGATGAGGGTTATCATGC+AGG | - | chr3.1:20617419-20617438 | MS.gene79072:intron | 45.0% | |
| GCAGAAAAACACTGAGGAGA+AGG | + | chr3.1:20616932-20616951 | None:intergenic | 45.0% | |
| GCCTTACCCATTTCAAGCAA+TGG | + | chr3.1:20616186-20616205 | None:intergenic | 45.0% | |
| GGGTTGAAAGAAAACTGACC+AGG | + | chr3.1:20614719-20614738 | None:intergenic | 45.0% | |
| GTTGCTAAGGTAGGCAATCT+AGG | - | chr3.1:20616604-20616623 | MS.gene79072:intron | 45.0% | |
| TCCAATGTCCATACCAGTGT+CGG | - | chr3.1:20616571-20616590 | MS.gene79072:intron | 45.0% | |
| TGGACGGGATGTGTGTTAAA+GGG | - | chr3.1:20616214-20616233 | MS.gene79072:CDS | 45.0% | |
| TGGGGAGAAGATGATGAAAG+GGG | + | chr3.1:20615778-20615797 | None:intergenic | 45.0% | |
| TTGAAATGGGTAAGGCTGAG+AGG | - | chr3.1:20616190-20616209 | MS.gene79072:CDS | 45.0% | |
| TTGGACGGGATGTGTGTTAA+AGG | - | chr3.1:20616213-20616232 | MS.gene79072:CDS | 45.0% | |
| ! | CTCCTCAGTGTTTTTCTGCT+GGG | - | chr3.1:20616933-20616952 | MS.gene79072:intron | 45.0% |
| ! | TCTCCTCAGTGTTTTTCTGC+TGG | - | chr3.1:20616932-20616951 | MS.gene79072:intron | 45.0% |
| !! | GGTGAACGCTTTGAAAGAGT+TGG | - | chr3.1:20616137-20616156 | MS.gene79072:CDS | 45.0% |
| !!! | GAAGCTTGGTTTTGCAAACC+TGG | - | chr3.1:20614698-20614717 | MS.gene79072:CDS | 45.0% |
| !!! | ATATTTATAAAATTTTAGTT+AGG | - | chr3.1:20617221-20617240 | MS.gene79072:intron | 5.0% |
| AATGGGTAAGGCTGAGAGGT+TGG | - | chr3.1:20616194-20616213 | MS.gene79072:CDS | 50.0% | |
| ACATACCATTAGCCGGGATC+TGG | + | chr3.1:20616987-20617006 | None:intergenic | 50.0% | |
| ACCGACACTGGTATGGACAT+TGG | + | chr3.1:20616575-20616594 | None:intergenic | 50.0% | |
| AGCCCAGCAGAAAAACACTG+AGG | + | chr3.1:20616938-20616957 | None:intergenic | 50.0% | |
| AGGGTTATCATGCAGGAGAG+AGG | - | chr3.1:20617426-20617445 | MS.gene79072:intron | 50.0% | |
| CAACAAACTTGGGTGCGTTG+AGG | + | chr3.1:20614637-20614656 | None:intergenic | 50.0% | |
| CAATCACCCCAAAACAGCAG+AGG | - | chr3.1:20615094-20615113 | MS.gene79072:intron | 50.0% | |
| CCTCAAAAGGTTCCAGATCC+CGG | - | chr3.1:20616972-20616991 | MS.gene79072:intron | 50.0% | |
| GGAGAAGATGATGAAAGGGG+TGG | + | chr3.1:20615775-20615794 | None:intergenic | 50.0% | |
| GGTTGGGACATACCATTAGC+CGG | + | chr3.1:20616994-20617013 | None:intergenic | 50.0% | |
| GTTGGGACATACCATTAGCC+GGG | + | chr3.1:20616993-20617012 | None:intergenic | 50.0% | |
| TGGAACCCGCGAAAATCGAT+TGG | - | chr3.1:20614567-20614586 | MS.gene79072:CDS | 50.0% | |
| ! | GGCATGTTTTCTGCCTCATC+AGG | + | chr3.1:20616839-20616858 | None:intergenic | 50.0% |
| !! | CGGGATCTGGAACCTTTTGA+GGG | + | chr3.1:20616974-20616993 | None:intergenic | 50.0% |
| !! | GGATCTGGAACCTTTTGAGG+GGG | + | chr3.1:20616972-20616991 | None:intergenic | 50.0% |
| !! | GGGATCTGGAACCTTTTGAG+GGG | + | chr3.1:20616973-20616992 | None:intergenic | 50.0% |
| !! | TGGAACCTTTTGAGGGGGTA+GGG | + | chr3.1:20616967-20616986 | None:intergenic | 50.0% |
| AGGTTCCAGATCCCGGCTAA+TGG | - | chr3.1:20616979-20616998 | MS.gene79072:intron | 55.0% | |
| CTAACACCGTCACATGCGAG+TGG | - | chr3.1:20616488-20616507 | MS.gene79072:intron | 55.0% | |
| GGTAAGGCTGAGAGGTTGGA+CGG | - | chr3.1:20616198-20616217 | MS.gene79072:CDS | 55.0% | |
| GTAAGGCTGAGAGGTTGGAC+GGG | - | chr3.1:20616199-20616218 | MS.gene79072:CDS | 55.0% | |
| ! | TTTCAAAGCGTTCACCGGCG+AGG | + | chr3.1:20616133-20616152 | None:intergenic | 55.0% |
| !! | CCGGGATCTGGAACCTTTTG+AGG | + | chr3.1:20616975-20616994 | None:intergenic | 55.0% |
| !! | CTGGAACCTTTTGAGGGGGT+AGG | + | chr3.1:20616968-20616987 | None:intergenic | 55.0% |
| TGTGCACGAGAAGACCTCGC+CGG | - | chr3.1:20616116-20616135 | MS.gene79072:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 20614566 | 20617596 | 20614566 | ID=MS.gene79072 |
| chr3.1 | mRNA | 20614566 | 20617596 | 20614566 | ID=MS.gene79072.t1;Parent=MS.gene79072 |
| chr3.1 | exon | 20617443 | 20617596 | 20617443 | ID=MS.gene79072.t1.exon1;Parent=MS.gene79072.t1 |
| chr3.1 | CDS | 20617443 | 20617596 | 20617443 | ID=cds.MS.gene79072.t1;Parent=MS.gene79072.t1 |
| chr3.1 | exon | 20617017 | 20617072 | 20617017 | ID=MS.gene79072.t1.exon2;Parent=MS.gene79072.t1 |
| chr3.1 | CDS | 20617017 | 20617072 | 20617017 | ID=cds.MS.gene79072.t1;Parent=MS.gene79072.t1 |
| chr3.1 | exon | 20616525 | 20616580 | 20616525 | ID=MS.gene79072.t1.exon3;Parent=MS.gene79072.t1 |
| chr3.1 | CDS | 20616525 | 20616580 | 20616525 | ID=cds.MS.gene79072.t1;Parent=MS.gene79072.t1 |
| chr3.1 | exon | 20615909 | 20616415 | 20615909 | ID=MS.gene79072.t1.exon4;Parent=MS.gene79072.t1 |
| chr3.1 | CDS | 20615909 | 20616415 | 20615909 | ID=cds.MS.gene79072.t1;Parent=MS.gene79072.t1 |
| chr3.1 | exon | 20615162 | 20615330 | 20615162 | ID=MS.gene79072.t1.exon5;Parent=MS.gene79072.t1 |
| chr3.1 | CDS | 20615162 | 20615330 | 20615162 | ID=cds.MS.gene79072.t1;Parent=MS.gene79072.t1 |
| chr3.1 | exon | 20614566 | 20614721 | 20614566 | ID=MS.gene79072.t1.exon6;Parent=MS.gene79072.t1 |
| chr3.1 | CDS | 20614566 | 20614721 | 20614566 | ID=cds.MS.gene79072.t1;Parent=MS.gene79072.t1 |
| Gene Sequence |
| Protein sequence |
