Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79194.t1 | XP_013448036.1 | 98.5 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 9.10E-111 | 409.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79194.t1 | Q9C7A8 | 63.9 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 7.9e-71 | 268.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79194.t1 | I3SFH0 | 98.5 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 6.6e-111 | 409.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene79194 | MS.gene85342 | PPI |
MS.gene79194 | MS.gene062116 | PPI |
MS.gene79194 | MS.gene071261 | PPI |
MS.gene79194 | MS.gene070139 | PPI |
MS.gene79194 | MS.gene045765 | PPI |
MS.gene79194 | MS.gene78156 | PPI |
MS.gene79194 | MS.gene066551 | PPI |
MS.gene79194 | MS.gene066552 | PPI |
MS.gene79194 | MS.gene025347 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79194.t1 | MTR_7g029455 | 98.537 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 8.05e-151 | 419 |
MS.gene79194.t1 | MTR_7g029455 | 95.735 | 211 | 3 | 1 | 1 | 205 | 1 | 211 | 2.30e-148 | 413 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79194.t1 | AT3G12530 | 63.902 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 4.79e-93 | 273 |
MS.gene79194.t1 | AT3G12530 | 63.902 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 4.79e-93 | 273 |
MS.gene79194.t1 | AT3G12530 | 64.516 | 186 | 65 | 1 | 20 | 205 | 1 | 185 | 2.51e-84 | 250 |
MS.gene79194.t1 | AT3G12530 | 67.123 | 146 | 48 | 0 | 1 | 146 | 1 | 146 | 7.88e-71 | 214 |
Find 54 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTAAAGCTCTCCCAATAAA+TGG | 0.205932 | 7.2:+68581488 | None:intergenic |
AATATTGTTCGCCCATTTAT+TGG | 0.207398 | 7.2:-68581500 | MS.gene79194:CDS |
TAACAATGGCAGGGAGATTT+TGG | 0.258064 | 7.2:-68584845 | MS.gene79194:intron |
TTCTGCTTTCATTGTAAAAT+AGG | 0.298399 | 7.2:-68580820 | None:intergenic |
TCTGAAACTCGCTCTTGGTC+TGG | 0.304597 | 7.2:+68581431 | None:intergenic |
GTAACAATCTGTGGCGTAAA+TGG | 0.311525 | 7.2:+68584821 | None:intergenic |
CTGAAAAGAGTGAGAGTTCA+TGG | 0.319884 | 7.2:+68585105 | None:intergenic |
GCAAATGCTCGGACATCTCT+TGG | 0.362089 | 7.2:+68583829 | None:intergenic |
CATCGTGCCTAATCTCAAAA+TGG | 0.367525 | 7.2:-68584949 | MS.gene79194:CDS |
ATAGTTATGTATAACTTGTT+TGG | 0.384168 | 7.2:-68580924 | MS.gene79194:CDS |
ATATTGTTCGCCCATTTATT+GGG | 0.393276 | 7.2:-68581499 | MS.gene79194:CDS |
GAAATTTCTACATAATGAAA+TGG | 0.395437 | 7.2:+68583807 | None:intergenic |
ACATACTCTTGGGGCATTGT+GGG | 0.433438 | 7.2:+68581391 | None:intergenic |
CTGAAACTCGCTCTTGGTCT+GGG | 0.435449 | 7.2:+68581432 | None:intergenic |
ATCATTTCCTGAGAAGTACT+TGG | 0.450573 | 7.2:-68580856 | MS.gene79194:CDS |
ATATCTTCCAAGTACTTCTC+AGG | 0.464891 | 7.2:+68580849 | None:intergenic |
TTTGGTTGGCAATTGCTCTC+AGG | 0.469121 | 7.2:-68584787 | MS.gene79194:CDS |
GAACTCACCATGTATGCATC+AGG | 0.471100 | 7.2:+68583651 | None:intergenic |
TTGAGGACATCAGAGATGTA+AGG | 0.475567 | 7.2:-68583545 | MS.gene79194:CDS |
CAACATTCCTGATGCATACA+TGG | 0.483264 | 7.2:-68583658 | MS.gene79194:intron |
GTCTATCTGAAACTCGCTCT+TGG | 0.484851 | 7.2:+68581426 | None:intergenic |
GTAAAGCTCTCCCAATAAAT+GGG | 0.485912 | 7.2:+68581489 | None:intergenic |
TAAAGTTGAAACTGACTTGG+AGG | 0.491249 | 7.2:-68583517 | MS.gene79194:CDS |
TACTCAAGTACCACTTTGGT+TGG | 0.492862 | 7.2:-68584801 | MS.gene79194:CDS |
CAAATGCTCGGACATCTCTT+GGG | 0.494044 | 7.2:+68583830 | None:intergenic |
CTAAATCTGACCGGCTTCAA+AGG | 0.501266 | 7.2:-68580882 | MS.gene79194:CDS |
AACATACTCTTGGGGCATTG+TGG | 0.508642 | 7.2:+68581390 | None:intergenic |
CATCCACTGGGGAGGGACAA+TGG | 0.525539 | 7.2:+68584748 | None:intergenic |
TCATAAAGTTGAAACTGACT+TGG | 0.529908 | 7.2:-68583520 | MS.gene79194:CDS |
AGATAAGTTGACAGAAGTGT+TGG | 0.530139 | 7.2:-68583868 | MS.gene79194:CDS |
GCTTACCAACAGTCATCCAC+TGG | 0.531346 | 7.2:+68584735 | None:intergenic |
GGGGCATTGTGGGCAACTTG+TGG | 0.533914 | 7.2:+68581401 | None:intergenic |
TGGTCGTACATTTGCTGTGA+AGG | 0.538880 | 7.2:-68583487 | MS.gene79194:intron |
GTTGAAAGAGAAGAGATGGC+TGG | 0.538958 | 7.2:-68585137 | None:intergenic |
TTGTTACTCAAGTACCACTT+TGG | 0.547955 | 7.2:-68584805 | MS.gene79194:CDS |
TCTAGATTGCTAAATCTGAC+CGG | 0.564691 | 7.2:-68580891 | MS.gene79194:CDS |
TTGAAAGAGAAGAGATGGCT+GGG | 0.573014 | 7.2:-68585136 | None:intergenic |
ATAATGAAATGGCAAATGCT+CGG | 0.577438 | 7.2:+68583818 | None:intergenic |
CTTACAGAAATGAGACAAAG+AGG | 0.580250 | 7.2:+68584924 | None:intergenic |
AAATGATGTACCTTTGAAGC+CGG | 0.583948 | 7.2:+68580872 | None:intergenic |
CCTCCCCAGTGGATGACTGT+TGG | 0.598761 | 7.2:-68584740 | MS.gene79194:intron |
GCAATTGCTCTCAGGAAGAG+AGG | 0.614416 | 7.2:-68584779 | MS.gene79194:CDS |
GAAGGTGAGATCTCTAATTG+AGG | 0.615056 | 7.2:-68583562 | MS.gene79194:intron |
AGAGCAATTGCCAACCAAAG+TGG | 0.617222 | 7.2:+68584791 | None:intergenic |
CTTACCAACAGTCATCCACT+GGG | 0.619536 | 7.2:+68584736 | None:intergenic |
ACTGACTTGGAGGCATTCGA+TGG | 0.621680 | 7.2:-68583507 | MS.gene79194:CDS |
GCTCCATTGTCCCTCCCCAG+TGG | 0.633532 | 7.2:-68584751 | MS.gene79194:CDS |
CCAACAGTCATCCACTGGGG+AGG | 0.636318 | 7.2:+68584740 | None:intergenic |
CAACAGTCATCCACTGGGGA+GGG | 0.643608 | 7.2:+68584741 | None:intergenic |
AAGAGCGAGTTTCAGATAGA+CGG | 0.644239 | 7.2:-68581424 | MS.gene79194:CDS |
ATCAAACAAACATACTCTTG+GGG | 0.651202 | 7.2:+68581382 | None:intergenic |
TTAGCTTGAGTTCATCGCTG+AGG | 0.657498 | 7.2:-68584985 | MS.gene79194:intron |
GGTACTTGAGTAACAATCTG+TGG | 0.658894 | 7.2:+68584812 | None:intergenic |
TTACCAACAGTCATCCACTG+GGG | 0.839829 | 7.2:+68584737 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTACAATATATTTATAACAA+TGG | - | chr7.2:68581084-68581103 | MS.gene79194:intron | 10.0% |
!!! | ATAAAATGTTTTAAATAAAG+TGG | - | chr7.2:68584195-68584214 | MS.gene79194:intron | 10.0% |
!!! | ATTTGAAGTTTATATATATA+AGG | - | chr7.2:68582537-68582556 | MS.gene79194:intron | 10.0% |
!!! | TTAAAACATTTTATTATGTT+GGG | + | chr7.2:68584189-68584208 | None:intergenic | 10.0% |
!!! | TTTAAAACATTTTATTATGT+TGG | + | chr7.2:68584190-68584209 | None:intergenic | 10.0% |
!!! | GAACTTTCTTTAAAATAATT+TGG | + | chr7.2:68582692-68582711 | None:intergenic | 15.0% |
!! | AAAAAAATGCTGAATTAGTT+AGG | - | chr7.2:68583250-68583269 | MS.gene79194:intron | 20.0% |
!! | AAAAAATGCTGAATTAGTTA+GGG | - | chr7.2:68583251-68583270 | MS.gene79194:intron | 20.0% |
!! | AAAAATAACATCAAAGTTGA+TGG | + | chr7.2:68581605-68581624 | None:intergenic | 20.0% |
!! | AATATATTTATAACAATGGC+AGG | - | chr7.2:68581088-68581107 | MS.gene79194:intron | 20.0% |
!! | ACAATTTACATCATAATTCT+TGG | - | chr7.2:68584383-68584402 | MS.gene79194:intron | 20.0% |
!! | ACTAGTATTATCAAGAAATT+AGG | + | chr7.2:68584125-68584144 | None:intergenic | 20.0% |
!! | ATATATTTATAACAATGGCA+GGG | - | chr7.2:68581089-68581108 | MS.gene79194:intron | 20.0% |
!! | CTAGTATTATCAAGAAATTA+GGG | + | chr7.2:68584124-68584143 | None:intergenic | 20.0% |
!! | GAAATTTCTACATAATGAAA+TGG | + | chr7.2:68582139-68582158 | None:intergenic | 20.0% |
!! | GATTAAAAATTTATCTGCAA+TGG | - | chr7.2:68584415-68584434 | MS.gene79194:intron | 20.0% |
!! | TGTTATTGTTAAAGTTAGTT+GGG | - | chr7.2:68583947-68583966 | MS.gene79194:intron | 20.0% |
!! | TTATCAATTGCAAAAAATAG+CGG | + | chr7.2:68581788-68581807 | None:intergenic | 20.0% |
!! | TTCTAAATCTAAATCTATAC+TGG | + | chr7.2:68582865-68582884 | None:intergenic | 20.0% |
!! | TTTAAATAAAGTGGACATAT+GGG | - | chr7.2:68584204-68584223 | MS.gene79194:intron | 20.0% |
!!! | AATTTCTTGATAATACTAGT+TGG | - | chr7.2:68584125-68584144 | MS.gene79194:intron | 20.0% |
!!! | ATAGTTATGTATAACTTGTT+TGG | - | chr7.2:68585019-68585038 | MS.gene79194:intron | 20.0% |
!!! | ATGGTTAATTTTTTTAGTAC+AGG | + | chr7.2:68584607-68584626 | None:intergenic | 20.0% |
!!! | CGATTTTCTTTAATTATTAG+TGG | - | chr7.2:68581348-68581367 | MS.gene79194:intron | 20.0% |
!!! | CTTACACTTTTTTTTATACT+TGG | - | chr7.2:68584238-68584257 | MS.gene79194:intron | 20.0% |
!!! | GTATAGTTTTATTCATGTTA+GGG | - | chr7.2:68583714-68583733 | MS.gene79194:intron | 20.0% |
!!! | TCATATTTTTCTAAACTTAC+TGG | + | chr7.2:68582177-68582196 | None:intergenic | 20.0% |
!!! | TGTATAGTTTTATTCATGTT+AGG | - | chr7.2:68583713-68583732 | MS.gene79194:intron | 20.0% |
!!! | TTGCATTTAAAATTTCAAAC+TGG | - | chr7.2:68582596-68582615 | MS.gene79194:intron | 20.0% |
!!! | TTGTTATTGTTAAAGTTAGT+TGG | - | chr7.2:68583946-68583965 | MS.gene79194:intron | 20.0% |
!!! | TTTATACTTGGATTTTGAAT+TGG | - | chr7.2:68584250-68584269 | MS.gene79194:intron | 20.0% |
!!! | TTTTAAATAAAGTGGACATA+TGG | - | chr7.2:68584203-68584222 | MS.gene79194:intron | 20.0% |
! | AAAAGGGAAAATATCAACAT+AGG | - | chr7.2:68583629-68583648 | MS.gene79194:intron | 25.0% |
! | AAAATGACATGTTTACACAA+AGG | + | chr7.2:68583833-68583852 | None:intergenic | 25.0% |
! | AAAGGGAAAATATCAACATA+GGG | - | chr7.2:68583630-68583649 | MS.gene79194:intron | 25.0% |
! | AAAGGTCTATTATAGAGAAA+AGG | - | chr7.2:68583612-68583631 | MS.gene79194:intron | 25.0% |
! | AAGGTCTATTATAGAGAAAA+GGG | - | chr7.2:68583613-68583632 | MS.gene79194:intron | 25.0% |
! | AGGGTTTAATGTTGTATTTA+AGG | - | chr7.2:68583649-68583668 | MS.gene79194:intron | 25.0% |
! | ATAAATAACTGCATTCACAT+AGG | + | chr7.2:68583690-68583709 | None:intergenic | 25.0% |
! | ATATCAAACAAACATACTCT+TGG | + | chr7.2:68584566-68584585 | None:intergenic | 25.0% |
! | ATGCATCTCTTTCATATATT+AGG | - | chr7.2:68582897-68582916 | MS.gene79194:intron | 25.0% |
! | ATGTTGCCTATAAAAAAGAA+GGG | - | chr7.2:68583987-68584006 | MS.gene79194:intron | 25.0% |
! | ATTAAATAGGAGAAAACAAG+AGG | - | chr7.2:68582781-68582800 | MS.gene79194:intron | 25.0% |
! | CTAGTCACAAACAAATATTA+TGG | + | chr7.2:68582057-68582076 | None:intergenic | 25.0% |
! | GAAAACAAAAAGAATGATGA+AGG | - | chr7.2:68583159-68583178 | MS.gene79194:intron | 25.0% |
! | GAAATGAATAGATATGTAAC+AGG | + | chr7.2:68584356-68584375 | None:intergenic | 25.0% |
! | GTACATAGCAAATAAGTAAA+TGG | + | chr7.2:68584626-68584645 | None:intergenic | 25.0% |
! | GTTATTGTTAGTTAGAGTTA+TGG | - | chr7.2:68583066-68583085 | MS.gene79194:intron | 25.0% |
! | TAAACCAACAAATTCTAAAC+TGG | + | chr7.2:68582001-68582020 | None:intergenic | 25.0% |
! | TATCAAACAAACATACTCTT+GGG | + | chr7.2:68584565-68584584 | None:intergenic | 25.0% |
! | TATGTTGCCTATAAAAAAGA+AGG | - | chr7.2:68583986-68584005 | MS.gene79194:intron | 25.0% |
! | TGATGTAAGACAAAAATGTT+TGG | - | chr7.2:68584901-68584920 | MS.gene79194:intron | 25.0% |
! | TTAAAATTTCAAACTGGAAG+AGG | - | chr7.2:68582602-68582621 | MS.gene79194:intron | 25.0% |
! | TTAAAGTTAGTTGGGTAATT+AGG | - | chr7.2:68583955-68583974 | MS.gene79194:intron | 25.0% |
! | TTTAGAGATAAATTGTCTTG+AGG | + | chr7.2:68582944-68582963 | None:intergenic | 25.0% |
! | TTTCTCCTATTTAATTACAG+CGG | + | chr7.2:68582776-68582795 | None:intergenic | 25.0% |
!! | CATAGTTGAAAATCTTTTTG+AGG | + | chr7.2:68581254-68581273 | None:intergenic | 25.0% |
!! | TATTCCAGTTTAGAATTTGT+TGG | - | chr7.2:68581994-68582013 | MS.gene79194:intron | 25.0% |
!! | TTAGTTTATTTCTCTTGTGA+AGG | - | chr7.2:68582363-68582382 | MS.gene79194:intron | 25.0% |
!!! | AGGAGGTATAATTTTCAAAT+TGG | - | chr7.2:68580864-68580883 | MS.gene79194:CDS | 25.0% |
!!! | CTTTAAAATAATTTGGTAGC+AGG | + | chr7.2:68582685-68582704 | None:intergenic | 25.0% |
!!! | GGTAATTTTTCGAATCTTTT+TGG | - | chr7.2:68582477-68582496 | MS.gene79194:intron | 25.0% |
!!! | TCATCATTCTTTTTGTTTTC+TGG | + | chr7.2:68583159-68583178 | None:intergenic | 25.0% |
!!! | TTGTTGGTTTAAGTAATAAC+AGG | - | chr7.2:68582010-68582029 | MS.gene79194:intron | 25.0% |
!!! | TTTTTCTAGAGGAATTGAAT+AGG | - | chr7.2:68583381-68583400 | MS.gene79194:intron | 25.0% |
AAATCAGGAACCATATTCTT+TGG | - | chr7.2:68583186-68583205 | MS.gene79194:intron | 30.0% | |
AAGTTCCGCTGTAATTAAAT+AGG | - | chr7.2:68582768-68582787 | MS.gene79194:intron | 30.0% | |
AATATTGTTCGCCCATTTAT+TGG | - | chr7.2:68584443-68584462 | MS.gene79194:intron | 30.0% | |
AATCAGGAACCATATTCTTT+GGG | - | chr7.2:68583187-68583206 | MS.gene79194:intron | 30.0% | |
AATTGAAAACCTATGAAGCA+CGG | + | chr7.2:68581407-68581426 | None:intergenic | 30.0% | |
ACATTGCCATTGTTAGATTA+CGG | + | chr7.2:68581494-68581513 | None:intergenic | 30.0% | |
AGTTGGGTAATTAGGAAATA+AGG | - | chr7.2:68583963-68583982 | MS.gene79194:intron | 30.0% | |
ATAATGAAATGGCAAATGCT+CGG | + | chr7.2:68582128-68582147 | None:intergenic | 30.0% | |
ATATTGTTCGCCCATTTATT+GGG | - | chr7.2:68584444-68584463 | MS.gene79194:intron | 30.0% | |
ATCAAACAAACATACTCTTG+GGG | + | chr7.2:68584564-68584583 | None:intergenic | 30.0% | |
ATTTAATGGTTGTGAATGTC+TGG | - | chr7.2:68582502-68582521 | MS.gene79194:intron | 30.0% | |
GTGCAATGAACATAAAAGTT+TGG | - | chr7.2:68582803-68582822 | MS.gene79194:intron | 30.0% | |
GTGGCATTATTGTTAAATAG+CGG | - | chr7.2:68581667-68581686 | MS.gene79194:intron | 30.0% | |
GTTTCTATCAGGTTTCTATT+TGG | - | chr7.2:68584147-68584166 | MS.gene79194:intron | 30.0% | |
TCATAAAGTTGAAACTGACT+TGG | - | chr7.2:68582423-68582442 | MS.gene79194:intron | 30.0% | |
TGGAAAATTGCGTATAGATA+TGG | - | chr7.2:68581460-68581479 | MS.gene79194:CDS | 30.0% | |
TTCAGTGTAATCATATGTGT+CGG | + | chr7.2:68581323-68581342 | None:intergenic | 30.0% | |
TTTAAACTTCTCTGTCCTTT+CGG | - | chr7.2:68581931-68581950 | MS.gene79194:intron | 30.0% | |
! | AATACTAGTTGGTTTCTATC+AGG | - | chr7.2:68584136-68584155 | MS.gene79194:intron | 30.0% |
! | AGCTATAGATACATTTTCAC+CGG | - | chr7.2:68584824-68584843 | MS.gene79194:CDS | 30.0% |
! | ATGCAGAGGATATTGATTAT+TGG | + | chr7.2:68582842-68582861 | None:intergenic | 30.0% |
! | GATTTTCCGTAATCTAACAA+TGG | - | chr7.2:68581485-68581504 | MS.gene79194:CDS | 30.0% |
! | TAGGAATCATTTTGTGAACA+GGG | - | chr7.2:68584093-68584112 | MS.gene79194:intron | 30.0% |
! | TGCAGAGGATATTGATTATT+GGG | + | chr7.2:68582841-68582860 | None:intergenic | 30.0% |
! | TTTTCTCATCAGTAGTTTCA+GGG | - | chr7.2:68583850-68583869 | MS.gene79194:CDS | 30.0% |
! | TTTTTCTCATCAGTAGTTTC+AGG | - | chr7.2:68583849-68583868 | MS.gene79194:CDS | 30.0% |
!! | GAATCTTTTTGGCGATTTAA+TGG | - | chr7.2:68582488-68582507 | MS.gene79194:intron | 30.0% |
!! | GCTATTTTCTTTTCATCTTG+AGG | - | chr7.2:68583499-68583518 | MS.gene79194:CDS | 30.0% |
!! | TTTGATTCTGATTTGGTCTT+AGG | - | chr7.2:68581821-68581840 | MS.gene79194:intron | 30.0% |
!! | TTTTGTTATCTCTTGTGACT+AGG | - | chr7.2:68583747-68583766 | MS.gene79194:intron | 30.0% |
!!! | AACAATGGCAATGTTTTAGT+TGG | - | chr7.2:68581500-68581519 | MS.gene79194:CDS | 30.0% |
!!! | CTTGTGTTTTGATTCTGATT+TGG | - | chr7.2:68581814-68581833 | MS.gene79194:intron | 30.0% |
!!! | GAGATGTTGTTTTTTTCTAG+AGG | - | chr7.2:68583370-68583389 | MS.gene79194:intron | 30.0% |
!!! | TTTTTTGAAGACGACAATGA+GGG | - | chr7.2:68583316-68583335 | MS.gene79194:intron | 30.0% |
!!! | TTTTTTTGAAGACGACAATG+AGG | - | chr7.2:68583315-68583334 | MS.gene79194:intron | 30.0% |
AAAATCCTGCAGCATATTTC+TGG | + | chr7.2:68582333-68582352 | None:intergenic | 35.0% | |
AAAATCTGGCTGGAAAATAC+AGG | - | chr7.2:68584322-68584341 | MS.gene79194:intron | 35.0% | |
AAATGCTGAATTAGTTAGGG+TGG | - | chr7.2:68583254-68583273 | MS.gene79194:intron | 35.0% | |
AACTATAACAGTTCCACTGT+TGG | - | chr7.2:68583438-68583457 | MS.gene79194:intron | 35.0% | |
ACACAATAGATCACTCTCTA+AGG | + | chr7.2:68584015-68584034 | None:intergenic | 35.0% | |
ACTATAACAGTTCCACTGTT+GGG | - | chr7.2:68583439-68583458 | MS.gene79194:intron | 35.0% | |
ATATCTTCCAAGTACTTCTC+AGG | + | chr7.2:68585097-68585116 | None:intergenic | 35.0% | |
CTTACAGAAATGAGACAAAG+AGG | + | chr7.2:68581022-68581041 | None:intergenic | 35.0% | |
GAAACTAGGATAGCCATAAA+GGG | + | chr7.2:68583886-68583905 | None:intergenic | 35.0% | |
GAATTGTCTCGTCTCATTTA+TGG | - | chr7.2:68582658-68582677 | MS.gene79194:intron | 35.0% | |
GAGAAGTTTAAAAGAACCAG+TGG | + | chr7.2:68581923-68581942 | None:intergenic | 35.0% | |
GATGTGAAAAATGAGTAGTC+CGG | + | chr7.2:68584846-68584865 | None:intergenic | 35.0% | |
GCTTATGACTATTAATCCAC+TGG | - | chr7.2:68581904-68581923 | MS.gene79194:intron | 35.0% | |
GTAAAGCTCTCCCAATAAAT+GGG | + | chr7.2:68584457-68584476 | None:intergenic | 35.0% | |
GTTTCTATCCTAGAAAACGT+TGG | + | chr7.2:68583109-68583128 | None:intergenic | 35.0% | |
TAAATCTATACTGGATGCAG+AGG | + | chr7.2:68582856-68582875 | None:intergenic | 35.0% | |
TAGTACAAAGTGTGGTCAAA+TGG | - | chr7.2:68581742-68581761 | MS.gene79194:intron | 35.0% | |
TATCAGGTTTCTATTTGGAG+AGG | - | chr7.2:68584152-68584171 | MS.gene79194:intron | 35.0% | |
TATCTCTTGTGACTAGGTTA+AGG | - | chr7.2:68583753-68583772 | MS.gene79194:intron | 35.0% | |
TCTAGATTGCTAAATCTGAC+CGG | - | chr7.2:68585052-68585071 | MS.gene79194:intron | 35.0% | |
TGCCAAAGTTTGCATTTGAT+AGG | - | chr7.2:68582997-68583016 | MS.gene79194:intron | 35.0% | |
TGTAAAGCTCTCCCAATAAA+TGG | + | chr7.2:68584458-68584477 | None:intergenic | 35.0% | |
TTGCGTCATGATCTTTAATG+CGG | - | chr7.2:68581437-68581456 | MS.gene79194:CDS | 35.0% | |
TTGTTACTCAAGTACCACTT+TGG | - | chr7.2:68581138-68581157 | MS.gene79194:intron | 35.0% | |
TTTCTCATCAGTAGTTTCAG+GGG | - | chr7.2:68583851-68583870 | MS.gene79194:CDS | 35.0% | |
! | AATGATGAAGGTCTGAAATC+AGG | - | chr7.2:68583171-68583190 | MS.gene79194:intron | 35.0% |
! | AGATAAGTTGACAGAAGTGT+TGG | - | chr7.2:68582075-68582094 | MS.gene79194:intron | 35.0% |
! | CATATTCTTTGGGAGGAAAA+GGG | - | chr7.2:68583197-68583216 | MS.gene79194:intron | 35.0% |
! | CTAGGAATCATTTTGTGAAC+AGG | - | chr7.2:68584092-68584111 | MS.gene79194:intron | 35.0% |
! | CTTTTAGATTGCACTTTGAC+TGG | - | chr7.2:68583780-68583799 | MS.gene79194:intron | 35.0% |
! | GACTGGAATTTTACTGTTAG+AGG | - | chr7.2:68583797-68583816 | MS.gene79194:CDS | 35.0% |
! | GCTTCATAGGTTTTCAATTG+CGG | - | chr7.2:68581408-68581427 | MS.gene79194:CDS | 35.0% |
! | TTCTAGAGGAATTGAATAGG+TGG | - | chr7.2:68583384-68583403 | MS.gene79194:intron | 35.0% |
! | TTGAATGACCAACGTTTTCT+AGG | - | chr7.2:68583098-68583117 | MS.gene79194:intron | 35.0% |
!! | AAATGATGTACCTTTGAAGC+CGG | + | chr7.2:68585074-68585093 | None:intergenic | 35.0% |
!! | AGCAACATCAGTTTGTTAAG+AGG | - | chr7.2:68583907-68583926 | MS.gene79194:intron | 35.0% |
!! | ATCATTTCCTGAGAAGTACT+TGG | - | chr7.2:68585087-68585106 | MS.gene79194:intron | 35.0% |
!! | CCAAAACACTCTAAAATGGT+GGG | + | chr7.2:68584288-68584307 | None:intergenic | 35.0% |
!! | GTGTCATTTGTATAGTCTTG+TGG | - | chr7.2:68584031-68584050 | MS.gene79194:intron | 35.0% |
!! | TAAAGTTGAAACTGACTTGG+AGG | - | chr7.2:68582426-68582445 | MS.gene79194:intron | 35.0% |
!!! | AAGGCTCCCTTCTTTTTTAT+AGG | + | chr7.2:68583996-68584015 | None:intergenic | 35.0% |
!!! | AATGGCAATGTTTTAGTTGG+TGG | - | chr7.2:68581503-68581522 | MS.gene79194:CDS | 35.0% |
!!! | AATGTTTTAGTTGGTGGACA+AGG | - | chr7.2:68581509-68581528 | MS.gene79194:CDS | 35.0% |
!!! | AGAGGATCCATTTTGAGATT+AGG | + | chr7.2:68581004-68581023 | None:intergenic | 35.0% |
!!! | GTTTTCTAGGATAGAAACAC+CGG | - | chr7.2:68583111-68583130 | MS.gene79194:intron | 35.0% |
AAACCTATGAAGCACGGATA+CGG | + | chr7.2:68581401-68581420 | None:intergenic | 40.0% | |
AAACTGGAAGAGGTAGCTTT+AGG | - | chr7.2:68582612-68582631 | MS.gene79194:intron | 40.0% | |
AAATAGCGGCTGTAGTATAG+TGG | - | chr7.2:68581681-68581700 | MS.gene79194:intron | 40.0% | |
AACTGATGTTGCTCGAAACT+AGG | + | chr7.2:68583900-68583919 | None:intergenic | 40.0% | |
AAGAGCGAGTTTCAGATAGA+CGG | - | chr7.2:68584519-68584538 | MS.gene79194:intron | 40.0% | |
AATTGAATAGGTGGAACGGT+GGG | - | chr7.2:68583393-68583412 | MS.gene79194:intron | 40.0% | |
ACCTCTTAACTGACAGAAAC+TGG | + | chr7.2:68583023-68583042 | None:intergenic | 40.0% | |
ACTTTCCAGAAATATGCTGC+AGG | - | chr7.2:68582325-68582344 | MS.gene79194:intron | 40.0% | |
AGACGAGACAATTCAACTAC+AGG | + | chr7.2:68582714-68582733 | None:intergenic | 40.0% | |
AGGACAAGATGACAGGTTAA+GGG | - | chr7.2:68583519-68583538 | MS.gene79194:CDS | 40.0% | |
AGGAGAAAGAGAGATAGACA+AGG | - | chr7.2:68581541-68581560 | MS.gene79194:intron | 40.0% | |
CAACATTCCTGATGCATACA+TGG | - | chr7.2:68582285-68582304 | MS.gene79194:intron | 40.0% | |
CAATGAGGGTAACATAGATC+TGG | - | chr7.2:68583330-68583349 | MS.gene79194:intron | 40.0% | |
CATAGAAATACCCATCACTC+CGG | + | chr7.2:68583133-68583152 | None:intergenic | 40.0% | |
CATCGTGCCTAATCTCAAAA+TGG | - | chr7.2:68580994-68581013 | MS.gene79194:intron | 40.0% | |
CGAAACTAGGATAGCCATAA+AGG | + | chr7.2:68583887-68583906 | None:intergenic | 40.0% | |
CTGAAAAGAGTGAGAGTTCA+TGG | + | chr7.2:68580841-68580860 | None:intergenic | 40.0% | |
GAAGGTGAGATCTCTAATTG+AGG | - | chr7.2:68582381-68582400 | MS.gene79194:intron | 40.0% | |
GAGGAATTGAATAGGTGGAA+CGG | - | chr7.2:68583389-68583408 | MS.gene79194:intron | 40.0% | |
GAGGATCTGTTGAATACTCT+AGG | - | chr7.2:68584074-68584093 | MS.gene79194:intron | 40.0% | |
GGAGAAAGAGAGATAGACAA+GGG | - | chr7.2:68581542-68581561 | MS.gene79194:intron | 40.0% | |
GGCCTATCAAATGCAAACTT+TGG | + | chr7.2:68583002-68583021 | None:intergenic | 40.0% | |
GGGGTGAATAATTCCCTTTA+TGG | - | chr7.2:68583870-68583889 | MS.gene79194:intron | 40.0% | |
GGTACTTGAGTAACAATCTG+TGG | + | chr7.2:68581134-68581153 | None:intergenic | 40.0% | |
GTAACAATCTGTGGCGTAAA+TGG | + | chr7.2:68581125-68581144 | None:intergenic | 40.0% | |
GTGCGATTTAGTACAAAGTG+TGG | - | chr7.2:68581734-68581753 | MS.gene79194:intron | 40.0% | |
GTTACTGCTTGTGTTAGACA+AGG | - | chr7.2:68583559-68583578 | MS.gene79194:CDS | 40.0% | |
TACTCAAGTACCACTTTGGT+TGG | - | chr7.2:68581142-68581161 | MS.gene79194:intron | 40.0% | |
TAGATATGTAACAGGACGAG+CGG | + | chr7.2:68584348-68584367 | None:intergenic | 40.0% | |
TCCTGCAGAGAAGACTTTAA+AGG | - | chr7.2:68583594-68583613 | MS.gene79194:intron | 40.0% | |
TTGAGGACATCAGAGATGTA+AGG | - | chr7.2:68582398-68582417 | MS.gene79194:intron | 40.0% | |
! | CACGCCAAAACACTCTAAAA+TGG | + | chr7.2:68584292-68584311 | None:intergenic | 40.0% |
! | CCATATTCTTTGGGAGGAAA+AGG | - | chr7.2:68583196-68583215 | MS.gene79194:intron | 40.0% |
! | CCTTTTCCTCCCAAAGAATA+TGG | + | chr7.2:68583199-68583218 | None:intergenic | 40.0% |
! | GTAATCATATGTGTCGGTGT+CGG | + | chr7.2:68581317-68581336 | None:intergenic | 40.0% |
! | TAACAATGGCAGGGAGATTT+TGG | - | chr7.2:68581098-68581117 | MS.gene79194:intron | 40.0% |
! | TCTTGTGGCCTTTTTGCATT+GGG | - | chr7.2:68584046-68584065 | MS.gene79194:intron | 40.0% |
! | TGTAGTAGTTTTCATGCAGC+TGG | - | chr7.2:68584967-68584986 | MS.gene79194:CDS | 40.0% |
!! | ACCTTTAAAGTCTTCTCTGC+AGG | + | chr7.2:68583598-68583617 | None:intergenic | 40.0% |
!! | ACTGTTGGGCTTTAAACAGT+GGG | - | chr7.2:68583453-68583472 | MS.gene79194:intron | 40.0% |
!! | GCCAAAACACTCTAAAATGG+TGG | + | chr7.2:68584289-68584308 | None:intergenic | 40.0% |
!!! | CCCACCATTTTAGAGTGTTT+TGG | - | chr7.2:68584285-68584304 | MS.gene79194:intron | 40.0% |
AAACTTCTCTGTCCTTTCGG+TGG | - | chr7.2:68581934-68581953 | MS.gene79194:intron | 45.0% | |
AGAGCAATTGCCAACCAAAG+TGG | + | chr7.2:68581155-68581174 | None:intergenic | 45.0% | |
CAAAGTGTGGTCAAATGGTG+TGG | - | chr7.2:68581747-68581766 | MS.gene79194:intron | 45.0% | |
CAAATGCTCGGACATCTCTT+GGG | + | chr7.2:68582116-68582135 | None:intergenic | 45.0% | |
CAGGAACCATATTCTTTGGG+AGG | - | chr7.2:68583190-68583209 | MS.gene79194:intron | 45.0% | |
CATCTTGAGGACAAGATGAC+AGG | - | chr7.2:68583512-68583531 | MS.gene79194:CDS | 45.0% | |
CCTGGGAAAATGATCTCAAG+AGG | - | chr7.2:68583477-68583496 | MS.gene79194:intron | 45.0% | |
CGTCATGATCTTTAATGCGG+TGG | - | chr7.2:68581440-68581459 | MS.gene79194:CDS | 45.0% | |
CTCAGTCTCCCAATGCAAAA+AGG | + | chr7.2:68584057-68584076 | None:intergenic | 45.0% | |
CTTACCAACAGTCATCCACT+GGG | + | chr7.2:68581210-68581229 | None:intergenic | 45.0% | |
GAACTCACCATGTATGCATC+AGG | + | chr7.2:68582295-68582314 | None:intergenic | 45.0% | |
GAATTGAATAGGTGGAACGG+TGG | - | chr7.2:68583392-68583411 | MS.gene79194:intron | 45.0% | |
GACAAGATGACAGGTTAAGG+GGG | - | chr7.2:68583521-68583540 | MS.gene79194:CDS | 45.0% | |
GAGGACAAGATGACAGGTTA+AGG | - | chr7.2:68583518-68583537 | MS.gene79194:CDS | 45.0% | |
GATAGAAACACCGGAGTGAT+GGG | - | chr7.2:68583120-68583139 | MS.gene79194:intron | 45.0% | |
GCCAGTTTCTGTCAGTTAAG+AGG | - | chr7.2:68583019-68583038 | MS.gene79194:intron | 45.0% | |
GGACAAGATGACAGGTTAAG+GGG | - | chr7.2:68583520-68583539 | MS.gene79194:CDS | 45.0% | |
GGTGGACAAGGTGAGAATAA+AGG | - | chr7.2:68581521-68581540 | MS.gene79194:CDS | 45.0% | |
GTTGTATGTTGCTGTCTACC+AGG | + | chr7.2:68583421-68583440 | None:intergenic | 45.0% | |
TGCTGAATTAGTTAGGGTGG+AGG | - | chr7.2:68583257-68583276 | MS.gene79194:intron | 45.0% | |
TTACCAACAGTCATCCACTG+GGG | + | chr7.2:68581209-68581228 | None:intergenic | 45.0% | |
TTTGGTTGGCAATTGCTCTC+AGG | - | chr7.2:68581156-68581175 | MS.gene79194:intron | 45.0% | |
! | ACTCTCACTCTTTTCAGCAG+AGG | - | chr7.2:68580844-68580863 | MS.gene79194:CDS | 45.0% |
! | CACTGTTTAAAGCCCAACAG+TGG | + | chr7.2:68583454-68583473 | None:intergenic | 45.0% |
! | CCTCTTGAGATCATTTTCCC+AGG | + | chr7.2:68583480-68583499 | None:intergenic | 45.0% |
! | CTAAATCTGACCGGCTTCAA+AGG | - | chr7.2:68585061-68585080 | MS.gene79194:intron | 45.0% |
! | CTTTTTGCATTGGGAGACTG+AGG | - | chr7.2:68584055-68584074 | MS.gene79194:intron | 45.0% |
! | GTCTATCTGAAACTCGCTCT+TGG | + | chr7.2:68584520-68584539 | None:intergenic | 45.0% |
! | GTCTTGTGGCCTTTTTGCAT+TGG | - | chr7.2:68584045-68584064 | MS.gene79194:intron | 45.0% |
! | TTAGCTTGAGTTCATCGCTG+AGG | - | chr7.2:68580958-68580977 | MS.gene79194:CDS | 45.0% |
!! | AACATACTCTTGGGGCATTG+TGG | + | chr7.2:68584556-68584575 | None:intergenic | 45.0% |
!! | ACATACTCTTGGGGCATTGT+GGG | + | chr7.2:68584555-68584574 | None:intergenic | 45.0% |
!! | CACTGTTGGGCTTTAAACAG+TGG | - | chr7.2:68583452-68583471 | MS.gene79194:intron | 45.0% |
!! | GCTGGTATTTGCTTTTGCAG+AGG | - | chr7.2:68584985-68585004 | MS.gene79194:intron | 45.0% |
!! | TGGTCGTACATTTGCTGTGA+AGG | - | chr7.2:68582456-68582475 | MS.gene79194:intron | 45.0% |
!!! | TAGAGTGTTTTGGCGTGTGA+CGG | - | chr7.2:68584295-68584314 | MS.gene79194:intron | 45.0% |
CTGAAACTCGCTCTTGGTCT+GGG | + | chr7.2:68584514-68584533 | None:intergenic | 50.0% | |
GCAAATGCTCGGACATCTCT+TGG | + | chr7.2:68582117-68582136 | None:intergenic | 50.0% | |
GCAATTGCTCTCAGGAAGAG+AGG | - | chr7.2:68581164-68581183 | MS.gene79194:intron | 50.0% | |
GCACAACCACTCCTCAGATT+AGG | - | chr7.2:68581276-68581295 | MS.gene79194:intron | 50.0% | |
GCTTACCAACAGTCATCCAC+TGG | + | chr7.2:68581211-68581230 | None:intergenic | 50.0% | |
GGATAGAAACACCGGAGTGA+TGG | - | chr7.2:68583119-68583138 | MS.gene79194:intron | 50.0% | |
TCGACTGCAATGCAAGCTTG+TGG | - | chr7.2:68581648-68581667 | MS.gene79194:intron | 50.0% | |
TGAAGCACGGATACGGACAT+CGG | + | chr7.2:68581394-68581413 | None:intergenic | 50.0% | |
TGTCCGTATCCGTGCTTCAT+AGG | - | chr7.2:68581395-68581414 | MS.gene79194:intron | 50.0% | |
! | CTCACTCTTTTCAGCAGAGG+AGG | - | chr7.2:68580847-68580866 | MS.gene79194:CDS | 50.0% |
! | TCTGAAACTCGCTCTTGGTC+TGG | + | chr7.2:68584515-68584534 | None:intergenic | 50.0% |
!! | ACTGACTTGGAGGCATTCGA+TGG | - | chr7.2:68582436-68582455 | MS.gene79194:intron | 50.0% |
!! | GGCTTTAAACAGTGGGACCT+GGG | - | chr7.2:68583460-68583479 | MS.gene79194:intron | 50.0% |
!!! | AGAGTGTTTTGGCGTGTGAC+GGG | - | chr7.2:68584296-68584315 | MS.gene79194:intron | 50.0% |
CAACAGTCATCCACTGGGGA+GGG | + | chr7.2:68581205-68581224 | None:intergenic | 55.0% | |
CTTCTCTGTCCTTTCGGTGG+TGG | - | chr7.2:68581937-68581956 | MS.gene79194:intron | 55.0% | |
GACACGCCTAATCTGAGGAG+TGG | + | chr7.2:68581285-68581304 | None:intergenic | 55.0% | |
TACGGACATCGGACACCACA+CGG | + | chr7.2:68581383-68581402 | None:intergenic | 55.0% | |
TCCACATGTCCACCACCGAA+AGG | + | chr7.2:68581949-68581968 | None:intergenic | 55.0% | |
TCCTCAGATTAGGCGTGTCG+CGG | - | chr7.2:68581286-68581305 | MS.gene79194:intron | 55.0% | |
TGACGGGGTGAAAATCTGGC+TGG | - | chr7.2:68584312-68584331 | MS.gene79194:intron | 55.0% | |
! | CGTGTGACGGGGTGAAAATC+TGG | - | chr7.2:68584308-68584327 | MS.gene79194:intron | 55.0% |
! | TAGTGGTGTCAGTGTCCGTG+TGG | - | chr7.2:68581365-68581384 | MS.gene79194:intron | 55.0% |
!! | GGGCTTTAAACAGTGGGACC+TGG | - | chr7.2:68583459-68583478 | MS.gene79194:intron | 55.0% |
!! | TCCTTTCGGTGGTGGACATG+TGG | - | chr7.2:68581945-68581964 | MS.gene79194:intron | 55.0% |
!!! | GAGTGTTTTGGCGTGTGACG+GGG | - | chr7.2:68584297-68584316 | MS.gene79194:intron | 55.0% |
CATCCACTGGGGAGGGACAA+TGG | + | chr7.2:68581198-68581217 | None:intergenic | 60.0% | |
CCAACAGTCATCCACTGGGG+AGG | + | chr7.2:68581206-68581225 | None:intergenic | 60.0% | |
CCTCCCCAGTGGATGACTGT+TGG | - | chr7.2:68581203-68581222 | MS.gene79194:intron | 60.0% | |
TAGGTGGAACGGTGGGATCC+TGG | - | chr7.2:68583400-68583419 | MS.gene79194:intron | 60.0% | |
!! | GGGGCATTGTGGGCAACTTG+TGG | + | chr7.2:68584545-68584564 | None:intergenic | 60.0% |
GCCGCGACACGCCTAATCTG+AGG | + | chr7.2:68581290-68581309 | None:intergenic | 65.0% | |
GCTCCATTGTCCCTCCCCAG+TGG | - | chr7.2:68581192-68581211 | MS.gene79194:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 68580821 | 68585144 | 68580821 | ID=MS.gene79194 |
chr7.2 | mRNA | 68580821 | 68585144 | 68580821 | ID=MS.gene79194.t1;Parent=MS.gene79194 |
chr7.2 | exon | 68585097 | 68585144 | 68585097 | ID=MS.gene79194.t1.exon1;Parent=MS.gene79194.t1 |
chr7.2 | CDS | 68585097 | 68585144 | 68585097 | ID=cds.MS.gene79194.t1;Parent=MS.gene79194.t1 |
chr7.2 | exon | 68584929 | 68585003 | 68584929 | ID=MS.gene79194.t1.exon2;Parent=MS.gene79194.t1 |
chr7.2 | CDS | 68584929 | 68585003 | 68584929 | ID=cds.MS.gene79194.t1;Parent=MS.gene79194.t1 |
chr7.2 | exon | 68584741 | 68584855 | 68584741 | ID=MS.gene79194.t1.exon3;Parent=MS.gene79194.t1 |
chr7.2 | CDS | 68584741 | 68584855 | 68584741 | ID=cds.MS.gene79194.t1;Parent=MS.gene79194.t1 |
chr7.2 | exon | 68583789 | 68583888 | 68583789 | ID=MS.gene79194.t1.exon4;Parent=MS.gene79194.t1 |
chr7.2 | CDS | 68583789 | 68583888 | 68583789 | ID=cds.MS.gene79194.t1;Parent=MS.gene79194.t1 |
chr7.2 | exon | 68583659 | 68583689 | 68583659 | ID=MS.gene79194.t1.exon5;Parent=MS.gene79194.t1 |
chr7.2 | CDS | 68583659 | 68583689 | 68583659 | ID=cds.MS.gene79194.t1;Parent=MS.gene79194.t1 |
chr7.2 | exon | 68583488 | 68583580 | 68583488 | ID=MS.gene79194.t1.exon6;Parent=MS.gene79194.t1 |
chr7.2 | CDS | 68583488 | 68583580 | 68583488 | ID=cds.MS.gene79194.t1;Parent=MS.gene79194.t1 |
chr7.2 | exon | 68581397 | 68581549 | 68581397 | ID=MS.gene79194.t1.exon7;Parent=MS.gene79194.t1 |
chr7.2 | CDS | 68581397 | 68581549 | 68581397 | ID=cds.MS.gene79194.t1;Parent=MS.gene79194.t1 |
chr7.2 | exon | 68580821 | 68580979 | 68580821 | ID=MS.gene79194.t1.exon8;Parent=MS.gene79194.t1 |
chr7.2 | CDS | 68580821 | 68580979 | 68580821 | ID=cds.MS.gene79194.t1;Parent=MS.gene79194.t1 |
Gene Sequence |
Protein sequence |