Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79508.t1 | XP_013454707.1 | 79.6 | 505 | 88 | 3 | 1 | 490 | 83 | 587 | 6.90E-200 | 706.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79508.t1 | Q9LMC8 | 42.0 | 81 | 47 | 0 | 206 | 286 | 317 | 397 | 3.1e-07 | 58.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79508.t1 | A0A072UHY6 | 79.6 | 505 | 88 | 3 | 1 | 490 | 83 | 587 | 4.9e-200 | 706.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050799 | MS.gene79508 | 0.802469 | 5.53E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene79508 | 0.820053 | 8.40E-53 | -1.69E-46 |
| MS.gene053146 | MS.gene79508 | 0.837777 | 4.25E-57 | -1.69E-46 |
| MS.gene054582 | MS.gene79508 | 0.84401 | 9.85E-59 | -1.69E-46 |
| MS.gene055818 | MS.gene79508 | 0.839096 | 1.94E-57 | -1.69E-46 |
| MS.gene058009 | MS.gene79508 | 0.800034 | 1.74E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79508.t1 | MTR_4g011550 | 89.109 | 505 | 40 | 3 | 1 | 490 | 83 | 587 | 0.0 | 842 |
| MS.gene79508.t1 | MTR_4g011540 | 64.251 | 414 | 87 | 9 | 1 | 387 | 83 | 462 | 2.13e-143 | 419 |
| MS.gene79508.t1 | MTR_1g070350 | 37.736 | 159 | 90 | 4 | 129 | 286 | 476 | 626 | 1.74e-18 | 89.4 |
| MS.gene79508.t1 | MTR_5g078300 | 47.826 | 69 | 36 | 0 | 200 | 268 | 627 | 695 | 7.28e-14 | 74.7 |
| MS.gene79508.t1 | MTR_4g093150 | 43.678 | 87 | 45 | 1 | 201 | 287 | 88 | 170 | 1.18e-13 | 70.5 |
| MS.gene79508.t1 | MTR_7g107000 | 41.584 | 101 | 59 | 0 | 191 | 291 | 68 | 168 | 2.49e-13 | 72.4 |
| MS.gene79508.t1 | MTR_1g054835 | 41.176 | 102 | 52 | 2 | 191 | 290 | 69 | 164 | 2.00e-12 | 69.7 |
| MS.gene79508.t1 | MTR_0168s0060 | 52.500 | 80 | 38 | 0 | 207 | 286 | 348 | 427 | 4.55e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79508.t1 | AT4G13630 | 30.693 | 505 | 221 | 22 | 13 | 436 | 69 | 525 | 1.02e-27 | 117 |
| MS.gene79508.t1 | AT4G13630 | 30.693 | 505 | 221 | 22 | 13 | 436 | 69 | 525 | 1.02e-27 | 117 |
| MS.gene79508.t1 | AT1G04890 | 31.421 | 401 | 207 | 11 | 67 | 427 | 7 | 379 | 7.66e-26 | 109 |
| MS.gene79508.t1 | AT1G70750 | 42.282 | 149 | 74 | 3 | 199 | 341 | 422 | 564 | 1.26e-20 | 95.9 |
| MS.gene79508.t1 | AT4G13160 | 60.396 | 101 | 39 | 1 | 189 | 288 | 112 | 212 | 1.26e-20 | 92.4 |
| MS.gene79508.t1 | AT5G16720 | 49.425 | 87 | 44 | 0 | 200 | 286 | 367 | 453 | 1.37e-19 | 92.4 |
| MS.gene79508.t1 | AT3G54740 | 27.301 | 326 | 177 | 11 | 206 | 485 | 87 | 398 | 6.34e-16 | 80.5 |
| MS.gene79508.t1 | AT3G54740 | 27.301 | 326 | 177 | 11 | 206 | 485 | 87 | 398 | 6.34e-16 | 80.5 |
| MS.gene79508.t1 | AT3G54740 | 27.301 | 326 | 177 | 11 | 206 | 485 | 87 | 398 | 6.34e-16 | 80.5 |
| MS.gene79508.t1 | AT3G54740 | 27.301 | 326 | 177 | 11 | 206 | 485 | 87 | 398 | 6.34e-16 | 80.5 |
| MS.gene79508.t1 | AT3G54740 | 27.660 | 329 | 172 | 12 | 206 | 485 | 39 | 350 | 7.31e-16 | 79.7 |
| MS.gene79508.t1 | AT3G54740 | 27.660 | 329 | 172 | 12 | 206 | 485 | 39 | 350 | 7.31e-16 | 79.7 |
| MS.gene79508.t1 | AT3G54740 | 27.660 | 329 | 172 | 12 | 206 | 485 | 39 | 350 | 7.31e-16 | 79.7 |
| MS.gene79508.t1 | AT3G54740 | 27.660 | 329 | 172 | 12 | 206 | 485 | 39 | 350 | 7.31e-16 | 79.7 |
| MS.gene79508.t1 | AT1G74830 | 52.439 | 82 | 39 | 0 | 206 | 287 | 318 | 399 | 1.80e-15 | 79.3 |
| MS.gene79508.t1 | AT1G08800 | 50.000 | 80 | 40 | 0 | 207 | 286 | 907 | 986 | 1.09e-14 | 77.4 |
| MS.gene79508.t1 | AT1G08800 | 50.000 | 80 | 40 | 0 | 207 | 286 | 907 | 986 | 1.09e-14 | 77.4 |
| MS.gene79508.t1 | AT1G08800 | 50.000 | 80 | 40 | 0 | 207 | 286 | 907 | 986 | 1.09e-14 | 77.4 |
| MS.gene79508.t1 | AT1G08800 | 50.000 | 80 | 40 | 0 | 207 | 286 | 907 | 986 | 1.09e-14 | 77.4 |
| MS.gene79508.t1 | AT5G06560 | 39.000 | 100 | 59 | 1 | 193 | 290 | 74 | 173 | 1.30e-14 | 76.6 |
| MS.gene79508.t1 | AT2G30690 | 48.148 | 81 | 42 | 0 | 206 | 286 | 629 | 709 | 9.47e-14 | 74.3 |
| MS.gene79508.t1 | AT2G30690 | 48.148 | 81 | 42 | 0 | 206 | 286 | 629 | 709 | 9.47e-14 | 74.3 |
| MS.gene79508.t1 | AT2G24140 | 43.434 | 99 | 52 | 2 | 188 | 286 | 18 | 112 | 1.94e-11 | 65.9 |
| MS.gene79508.t1 | AT2G24140 | 43.434 | 99 | 52 | 2 | 188 | 286 | 18 | 112 | 1.94e-11 | 65.9 |
| MS.gene79508.t1 | AT3G11850 | 34.286 | 105 | 65 | 2 | 193 | 293 | 65 | 169 | 2.59e-11 | 66.2 |
| MS.gene79508.t1 | AT3G11850 | 34.286 | 105 | 65 | 2 | 193 | 293 | 65 | 169 | 2.59e-11 | 66.2 |
| MS.gene79508.t1 | AT1G18990 | 48.810 | 84 | 43 | 0 | 203 | 286 | 314 | 397 | 3.72e-11 | 65.9 |
| MS.gene79508.t1 | AT4G30830 | 38.739 | 111 | 62 | 2 | 183 | 291 | 10 | 116 | 3.93e-11 | 65.1 |
| MS.gene79508.t1 | AT4G30830 | 38.739 | 111 | 62 | 2 | 183 | 291 | 10 | 116 | 3.93e-11 | 65.1 |
Find 88 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACCGGATTTGCCATTATT+TGG | 0.186893 | 4.2:+88805556 | MS.gene79508:CDS |
| AAAAGGTCAGTTGAAGCTTT+TGG | 0.244331 | 4.2:+88806472 | MS.gene79508:CDS |
| GACAATGAAATTGAAGTTCT+TGG | 0.266723 | 4.2:+88806380 | MS.gene79508:CDS |
| TGATAATAGGATTGTTGAAT+TGG | 0.314674 | 4.2:+88804549 | MS.gene79508:CDS |
| ATCAGACTCAGTATCATAAA+AGG | 0.329427 | 4.2:-88806210 | None:intergenic |
| CAAGAAAATATTGAGATTGT+TGG | 0.338742 | 4.2:+88805659 | MS.gene79508:CDS |
| AACAACAATGTTGTTCTCAT+TGG | 0.345249 | 4.2:-88804506 | None:intergenic |
| CAGAGCATAAATCCTGCTTC+AGG | 0.377459 | 4.2:+88804820 | MS.gene79508:CDS |
| TGATTATGGCAAACTGGATT+CGG | 0.390195 | 4.2:+88804705 | MS.gene79508:CDS |
| ATCAACACTGTTGTCATATT+CGG | 0.392879 | 4.2:-88806279 | None:intergenic |
| GAAGATGAGAGTTCGTGTTC+AGG | 0.396843 | 4.2:+88804571 | MS.gene79508:CDS |
| GAGAAAGGAGAAAATGAAAA+AGG | 0.398696 | 4.2:+88806455 | MS.gene79508:CDS |
| CTCGAATATATTCCTGTTCC+AGG | 0.399630 | 4.2:-88805629 | None:intergenic |
| TGCAAGAGATTCTTATAAGA+AGG | 0.403540 | 4.2:+88805918 | MS.gene79508:CDS |
| GGAGAAAGCGTCAATGGAAA+TGG | 0.405001 | 4.2:+88805829 | MS.gene79508:CDS |
| CAGGAACTCGGCGGAGGAAG+AGG | 0.406814 | 4.2:+88804674 | MS.gene79508:CDS |
| CGTCCAAATAATGGCAAATC+CGG | 0.417896 | 4.2:-88805559 | None:intergenic |
| CGTGTTTAGTTCATAATGAA+AGG | 0.437107 | 4.2:+88806348 | MS.gene79508:CDS |
| ATTAAATTCATAACTGTGAC+AGG | 0.437254 | 4.2:-88805588 | None:intergenic |
| GAGTTATGATTATGGCAAAC+TGG | 0.441007 | 4.2:+88804699 | MS.gene79508:CDS |
| TTCAGAAAATTAAACAATTG+AGG | 0.447524 | 4.2:+88806513 | MS.gene79508:CDS |
| TTCACCCAAACCAAATCAAA+AGG | 0.454988 | 4.2:-88804460 | None:intergenic |
| AGGCTGCCAAAGTGTGTCTT+GGG | 0.456575 | 4.2:+88807258 | MS.gene79508:CDS |
| GTTTGCTTTCGTTAGTAGAC+AGG | 0.463294 | 4.2:+88804599 | MS.gene79508:CDS |
| GATTCTTATAAGAAGGGAAA+GGG | 0.470243 | 4.2:+88805925 | MS.gene79508:CDS |
| GATTTGGTTTGGGTGAAGAA+AGG | 0.472052 | 4.2:+88804466 | MS.gene79508:CDS |
| AGTCCTTGCTTGCCTTGTGA+TGG | 0.476868 | 4.2:+88804766 | MS.gene79508:CDS |
| CGGAGGTGCGGCTTAGTGAA+TGG | 0.477317 | 4.2:+88806029 | MS.gene79508:CDS |
| TTGAGTTTGAAACGTAGATC+AGG | 0.479710 | 4.2:+88804655 | MS.gene79508:CDS |
| AATTAAACAATTGAGGAATC+CGG | 0.482576 | 4.2:+88806520 | MS.gene79508:CDS |
| AAATTGAAGTTCTTGGAGAA+AGG | 0.486448 | 4.2:+88806387 | MS.gene79508:CDS |
| ACGGTTGATAGTCCTGGAAC+AGG | 0.496528 | 4.2:+88805617 | MS.gene79508:CDS |
| TAGTTCATAATGAAAGGGTA+AGG | 0.498172 | 4.2:+88806354 | MS.gene79508:CDS |
| GGCAACGATGCGCCACGTGC+CGG | 0.498829 | 4.2:-88806539 | None:intergenic |
| GCAAGAGGAGAAAGCGTCAA+TGG | 0.499562 | 4.2:+88805823 | MS.gene79508:CDS |
| GCATCAACGGTTGATAGTCC+TGG | 0.503656 | 4.2:+88805611 | MS.gene79508:CDS |
| TTCTTATGATGAAGAAGAGA+TGG | 0.503897 | 4.2:+88805889 | MS.gene79508:CDS |
| AGGAACTCGGCGGAGGAAGA+GGG | 0.508780 | 4.2:+88804675 | MS.gene79508:CDS |
| GACTGAATGCAACATCAGAC+TGG | 0.508899 | 4.2:-88804747 | None:intergenic |
| GAGGCTGCCAAAGTGTGTCT+TGG | 0.510501 | 4.2:+88807257 | MS.gene79508:CDS |
| ACGCTAACTTTCCCTGAAGC+AGG | 0.512723 | 4.2:-88804832 | None:intergenic |
| GCAAGAGATTCTTATAAGAA+GGG | 0.513797 | 4.2:+88805919 | MS.gene79508:CDS |
| TATTCGGTCTTGCCTGCGCA+TGG | 0.519548 | 4.2:-88806263 | None:intergenic |
| CAGGTAAGGGAGAGGAAAAG+AGG | 0.520604 | 4.2:+88807238 | MS.gene79508:intron |
| TCATATGTTTCAAATGAAAG+TGG | 0.523317 | 4.2:-88806064 | None:intergenic |
| GAATCACTTTCAGAATCAAA+AGG | 0.526180 | 4.2:-88806323 | None:intergenic |
| TTGTCTCCCAAGACACACTT+TGG | 0.529389 | 4.2:-88807264 | None:intergenic |
| CTTCCATCACAAGGCAAGCA+AGG | 0.530174 | 4.2:-88804769 | None:intergenic |
| GATATGATGCTAAGGGGAAG+AGG | 0.538026 | 4.2:+88804629 | MS.gene79508:CDS |
| ATTTAGACGATGAAGATGAC+CGG | 0.539687 | 4.2:+88805540 | MS.gene79508:intron |
| GTGTTTAGTTCATAATGAAA+GGG | 0.540649 | 4.2:+88806349 | MS.gene79508:CDS |
| GTAGATCAGGAACTCGGCGG+AGG | 0.542572 | 4.2:+88804668 | MS.gene79508:CDS |
| GGACAGCGGATATGATGCTA+AGG | 0.545610 | 4.2:+88804621 | MS.gene79508:CDS |
| ATTGATGACGGTCCATGCGC+AGG | 0.545808 | 4.2:+88806251 | MS.gene79508:CDS |
| TCTTGGAGAAAGGCTGAAGA+TGG | 0.549792 | 4.2:+88806397 | MS.gene79508:CDS |
| GAACTCGGCGGAGGAAGAGG+GGG | 0.552875 | 4.2:+88804677 | MS.gene79508:CDS |
| GGAAGTTATACCTTAGTCCA+TGG | 0.560912 | 4.2:-88806566 | None:intergenic |
| TTATGAATTTAATGCATCAA+CGG | 0.561998 | 4.2:+88805598 | MS.gene79508:CDS |
| GGAACTCGGCGGAGGAAGAG+GGG | 0.563669 | 4.2:+88804676 | MS.gene79508:CDS |
| TACTGCTGCTGACGAAGCCA+TGG | 0.571022 | 4.2:+88805784 | MS.gene79508:CDS |
| AGAGCATAAATCCTGCTTCA+GGG | 0.576648 | 4.2:+88804821 | MS.gene79508:CDS |
| AGATTCTTATAAGAAGGGAA+AGG | 0.578868 | 4.2:+88805924 | MS.gene79508:CDS |
| ATTCGAAGTCAGCGGAGGTG+CGG | 0.589334 | 4.2:+88806017 | MS.gene79508:CDS |
| TTCAAGTAATGGCGGCGAAG+AGG | 0.592155 | 4.2:+88804434 | None:intergenic |
| TATGATATCGCGTCTGCAAG+AGG | 0.594932 | 4.2:+88805808 | MS.gene79508:CDS |
| GTTATACCTTAGTCCATGGA+GGG | 0.613165 | 4.2:-88806562 | None:intergenic |
| GACAGCGGATATGATGCTAA+GGG | 0.613317 | 4.2:+88804622 | MS.gene79508:CDS |
| TTTGCTTTCGTTAGTAGACA+GGG | 0.620119 | 4.2:+88804600 | MS.gene79508:CDS |
| GATGTCCATGTTATTGATGA+CGG | 0.620528 | 4.2:+88806239 | MS.gene79508:CDS |
| ATATTGCTGCTTCCATCACA+AGG | 0.624506 | 4.2:-88804778 | None:intergenic |
| TCTACTAACGAAAGCAAACG+CGG | 0.624552 | 4.2:-88804595 | None:intergenic |
| CAGACGCGATATCATAGCCA+TGG | 0.625045 | 4.2:-88805801 | None:intergenic |
| TCTTTATCTAGAGCTAGAGA+AGG | 0.632043 | 4.2:+88805745 | MS.gene79508:CDS |
| TATACCTTAGTCCATGGAGG+GGG | 0.636018 | 4.2:-88806560 | None:intergenic |
| TGAGTTGCATTCGAAGTCAG+CGG | 0.636324 | 4.2:+88806009 | MS.gene79508:CDS |
| ATATGATGCTAAGGGGAAGA+GGG | 0.643616 | 4.2:+88804630 | MS.gene79508:CDS |
| CAATTGAGGAATCCGGCACG+TGG | 0.659445 | 4.2:+88806527 | MS.gene79508:CDS |
| TTATACCTTAGTCCATGGAG+GGG | 0.660669 | 4.2:-88806561 | None:intergenic |
| AGTTATACCTTAGTCCATGG+AGG | 0.660730 | 4.2:-88806563 | None:intergenic |
| TGAAACGTAGATCAGGAACT+CGG | 0.665696 | 4.2:+88804662 | MS.gene79508:CDS |
| GCTAGAGAAGGAGAGAGCTG+CGG | 0.666878 | 4.2:+88805757 | MS.gene79508:CDS |
| GGCTTAGTGAATGGAAACGA+AGG | 0.670882 | 4.2:+88806038 | MS.gene79508:CDS |
| ATGGACCGTCATCAATAACA+TGG | 0.673173 | 4.2:-88806244 | None:intergenic |
| TGGAAATGAGACAATACGAG+AGG | 0.675395 | 4.2:+88805849 | MS.gene79508:CDS |
| GTTGCATTCGAAGTCAGCGG+AGG | 0.697996 | 4.2:+88806012 | MS.gene79508:CDS |
| ACAGCGGATATGATGCTAAG+GGG | 0.698216 | 4.2:+88804623 | MS.gene79508:CDS |
| TCGTTAGTAGACAGGGACAG+CGG | 0.699020 | 4.2:+88804607 | MS.gene79508:CDS |
| AACGTAGATCAGGAACTCGG+CGG | 0.765032 | 4.2:+88804665 | MS.gene79508:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATTTCAATTTCTTTT+TGG | + | chr4.2:88806871-88806890 | MS.gene79508:intron | 10.0% |
| !!! | TTTTGTTATTTTATGAATAC+CGG | + | chr4.2:88805470-88805489 | MS.gene79508:intron | 15.0% |
| !! | AAAAAGAACTTGAAAGTTAT+AGG | + | chr4.2:88805963-88805982 | MS.gene79508:CDS | 20.0% |
| !! | AACTCTTCTTTATGTATTAT+TGG | - | chr4.2:88806140-88806159 | None:intergenic | 20.0% |
| !! | AAGAAAAAACAAGTGATAAT+AGG | + | chr4.2:88804536-88804555 | MS.gene79508:CDS | 20.0% |
| !! | AATAATACATAAAGAAGAGT+TGG | + | chr4.2:88806139-88806158 | MS.gene79508:intron | 20.0% |
| !! | GTTCATGAAGAAAATTTAAA+TGG | - | chr4.2:88806608-88806627 | None:intergenic | 20.0% |
| !! | TTATGAATTTAATGCATCAA+CGG | + | chr4.2:88805598-88805617 | MS.gene79508:CDS | 20.0% |
| !! | TTCAGAAAATTAAACAATTG+AGG | + | chr4.2:88806513-88806532 | MS.gene79508:CDS | 20.0% |
| !!! | ATAAAATCCTTTTTTGATCA+TGG | + | chr4.2:88804907-88804926 | MS.gene79508:intron | 20.0% |
| !!! | ATTGTTTAATTTTCTGAAGA+CGG | - | chr4.2:88806511-88806530 | None:intergenic | 20.0% |
| !!! | TGTTTTCATACATTGTTATA+CGG | - | chr4.2:88805697-88805716 | None:intergenic | 20.0% |
| ! | AATAAGCAAGTTAAAACTAG+AGG | - | chr4.2:88805506-88805525 | None:intergenic | 25.0% |
| ! | AATTAAACAATTGAGGAATC+CGG | + | chr4.2:88806520-88806539 | MS.gene79508:CDS | 25.0% |
| ! | ACAAACAGAATTTGTATTTG+TGG | - | chr4.2:88806777-88806796 | None:intergenic | 25.0% |
| ! | ACTTATCAAGTAAGTGTTTA+TGG | - | chr4.2:88807114-88807133 | None:intergenic | 25.0% |
| ! | ATTAAATTCATAACTGTGAC+AGG | - | chr4.2:88805591-88805610 | None:intergenic | 25.0% |
| ! | ATTGATACCATGATCAAAAA+AGG | - | chr4.2:88804917-88804936 | None:intergenic | 25.0% |
| ! | CAAGAAAATATTGAGATTGT+TGG | + | chr4.2:88805659-88805678 | MS.gene79508:CDS | 25.0% |
| ! | CAGACAGAATTATAAAAAAG+AGG | - | chr4.2:88806941-88806960 | None:intergenic | 25.0% |
| ! | GAGAAGGAAAAAATTGAATT+TGG | + | chr4.2:88805238-88805257 | MS.gene79508:intron | 25.0% |
| ! | TCATATGTTTCAAATGAAAG+TGG | - | chr4.2:88806067-88806086 | None:intergenic | 25.0% |
| ! | TGAATGAATGATAACTAAGT+GGG | - | chr4.2:88804878-88804897 | None:intergenic | 25.0% |
| ! | TGATAATAGGATTGTTGAAT+TGG | + | chr4.2:88804549-88804568 | MS.gene79508:CDS | 25.0% |
| ! | TTGAATGAATGATAACTAAG+TGG | - | chr4.2:88804879-88804898 | None:intergenic | 25.0% |
| !! | ATACTGTTAGTTTCTGTTAT+TGG | - | chr4.2:88805312-88805331 | None:intergenic | 25.0% |
| !! | GTGTTTAGTTCATAATGAAA+GGG | + | chr4.2:88806349-88806368 | MS.gene79508:CDS | 25.0% |
| !! | TATTTTATGTGATCTGCAAT+TGG | + | chr4.2:88805198-88805217 | MS.gene79508:intron | 25.0% |
| !! | TCGGATCTATAATTATTTCT+AGG | + | chr4.2:88806691-88806710 | MS.gene79508:intron | 25.0% |
| AAAAACTCTACTATCAAGAC+AGG | - | chr4.2:88806843-88806862 | None:intergenic | 30.0% | |
| AAATGATACCTATCTTTCGA+AGG | + | chr4.2:88805043-88805062 | MS.gene79508:intron | 30.0% | |
| AAATTGAAGTTCTTGGAGAA+AGG | + | chr4.2:88806387-88806406 | MS.gene79508:CDS | 30.0% | |
| AACAACAATGTTGTTCTCAT+TGG | - | chr4.2:88804509-88804528 | None:intergenic | 30.0% | |
| AACTAGAGGCTTATAATATC+CGG | - | chr4.2:88805492-88805511 | None:intergenic | 30.0% | |
| AATACTATCAGTGGTCTATT+TGG | + | chr4.2:88806982-88807001 | MS.gene79508:intron | 30.0% | |
| AATGATACCTATCTTTCGAA+GGG | + | chr4.2:88805044-88805063 | MS.gene79508:intron | 30.0% | |
| AATGGAGATAGAAAACAAGT+TGG | - | chr4.2:88806590-88806609 | None:intergenic | 30.0% | |
| AGATTCTTATAAGAAGGGAA+AGG | + | chr4.2:88805924-88805943 | MS.gene79508:CDS | 30.0% | |
| ATCAACACTGTTGTCATATT+CGG | - | chr4.2:88806282-88806301 | None:intergenic | 30.0% | |
| ATCAGACTCAGTATCATAAA+AGG | - | chr4.2:88806213-88806232 | None:intergenic | 30.0% | |
| ATGAACGTGTTTGTTTATAG+AGG | + | chr4.2:88806622-88806641 | MS.gene79508:intron | 30.0% | |
| CAAGCAATATAGCAGAAATT+AGG | - | chr4.2:88807181-88807200 | None:intergenic | 30.0% | |
| GAAAGATAGGTATCATTTAC+CGG | - | chr4.2:88805041-88805060 | None:intergenic | 30.0% | |
| GAATCACTTTCAGAATCAAA+AGG | - | chr4.2:88806326-88806345 | None:intergenic | 30.0% | |
| GACAATGAAATTGAAGTTCT+TGG | + | chr4.2:88806380-88806399 | MS.gene79508:CDS | 30.0% | |
| GAGAAAGGAGAAAATGAAAA+AGG | + | chr4.2:88806455-88806474 | MS.gene79508:CDS | 30.0% | |
| GATTCTTATAAGAAGGGAAA+GGG | + | chr4.2:88805925-88805944 | MS.gene79508:CDS | 30.0% | |
| GCAAAAATTCATGTGATGAT+CGG | + | chr4.2:88806672-88806691 | MS.gene79508:intron | 30.0% | |
| GCAAGAGATTCTTATAAGAA+GGG | + | chr4.2:88805919-88805938 | MS.gene79508:CDS | 30.0% | |
| GGATAAAAACACTGAATACA+AGG | + | chr4.2:88806160-88806179 | MS.gene79508:CDS | 30.0% | |
| GTAGAATCTTGCTTAACATT+AGG | - | chr4.2:88806118-88806137 | None:intergenic | 30.0% | |
| TAGTTCATAATGAAAGGGTA+AGG | + | chr4.2:88806354-88806373 | MS.gene79508:CDS | 30.0% | |
| TATAAGCTGAAAACAGCTTA+TGG | - | chr4.2:88807090-88807109 | None:intergenic | 30.0% | |
| TCAACAACTTGTGATTATAC+CGG | + | chr4.2:88805019-88805038 | MS.gene79508:intron | 30.0% | |
| TGCAAGAGATTCTTATAAGA+AGG | + | chr4.2:88805918-88805937 | MS.gene79508:CDS | 30.0% | |
| TTCTTATGATGAAGAAGAGA+TGG | + | chr4.2:88805889-88805908 | MS.gene79508:CDS | 30.0% | |
| TTGAGATGTTTACCCAAATA+AGG | + | chr4.2:88807155-88807174 | MS.gene79508:intron | 30.0% | |
| TTGCAGATCACATAAAATAG+CGG | - | chr4.2:88805197-88805216 | None:intergenic | 30.0% | |
| ! | ATGACTATGTTTTCAGAGAA+AGG | + | chr4.2:88806440-88806459 | MS.gene79508:CDS | 30.0% |
| ! | CGTGTTTAGTTCATAATGAA+AGG | + | chr4.2:88806348-88806367 | MS.gene79508:CDS | 30.0% |
| ! | GTGGATTGTAATTATAGTTG+AGG | + | chr4.2:88806812-88806831 | MS.gene79508:intron | 30.0% |
| !!! | AAATGACCAATTTTTTTCCC+AGG | + | chr4.2:88807219-88807238 | MS.gene79508:intron | 30.0% |
| !!! | AGGTTTTTTCGTCCAAATAA+TGG | - | chr4.2:88805571-88805590 | None:intergenic | 30.0% |
| !!! | GTTTCCTTTTGATTTGGTTT+GGG | + | chr4.2:88804456-88804475 | MS.gene79508:CDS | 30.0% |
| ATGATACCTATCTTTCGAAG+GGG | + | chr4.2:88805045-88805064 | MS.gene79508:intron | 35.0% | |
| ATTTAGACGATGAAGATGAC+CGG | + | chr4.2:88805540-88805559 | MS.gene79508:intron | 35.0% | |
| GAGTTATGATTATGGCAAAC+TGG | + | chr4.2:88804699-88804718 | MS.gene79508:CDS | 35.0% | |
| GATGTCCATGTTATTGATGA+CGG | + | chr4.2:88806239-88806258 | MS.gene79508:CDS | 35.0% | |
| TAATCACAAGTTGTTGAGCA+TGG | - | chr4.2:88805016-88805035 | None:intergenic | 35.0% | |
| TATCAGTGGTCTATTTGGAT+TGG | + | chr4.2:88806987-88807006 | MS.gene79508:intron | 35.0% | |
| TGATTATGGCAAACTGGATT+CGG | + | chr4.2:88804705-88804724 | MS.gene79508:CDS | 35.0% | |
| TTCACCCAAACCAAATCAAA+AGG | - | chr4.2:88804463-88804482 | None:intergenic | 35.0% | |
| TTGTGTACAAAATCAGACAG+TGG | + | chr4.2:88806793-88806812 | MS.gene79508:intron | 35.0% | |
| TTTGCTTTCGTTAGTAGACA+GGG | + | chr4.2:88804600-88804619 | MS.gene79508:CDS | 35.0% | |
| ! | AAAAGGTCAGTTGAAGCTTT+TGG | + | chr4.2:88806472-88806491 | MS.gene79508:CDS | 35.0% |
| ! | CTCACAAGTTTTTATGTCAG+TGG | - | chr4.2:88807028-88807047 | None:intergenic | 35.0% |
| ! | TCAACTTGCACTCAAGTTTT+AGG | - | chr4.2:88805408-88805427 | None:intergenic | 35.0% |
| ! | TCTTTATCTAGAGCTAGAGA+AGG | + | chr4.2:88805745-88805764 | MS.gene79508:CDS | 35.0% |
| ! | TGGTCATTTAAGATTAGCGA+TGG | - | chr4.2:88807208-88807227 | None:intergenic | 35.0% |
| ! | TGTTTATAGAGGCATGTATG+TGG | + | chr4.2:88806633-88806652 | MS.gene79508:intron | 35.0% |
| ! | TTGAGTTTGAAACGTAGATC+AGG | + | chr4.2:88804655-88804674 | MS.gene79508:CDS | 35.0% |
| ! | TTTTCCTTCTCACTCTCTAT+CGG | - | chr4.2:88805229-88805248 | None:intergenic | 35.0% |
| !! | AGCAGAAATTAGGCCTTATT+TGG | - | chr4.2:88807171-88807190 | None:intergenic | 35.0% |
| !! | GAAGAGGTTTCCTTTTGATT+TGG | + | chr4.2:88804450-88804469 | MS.gene79508:CDS | 35.0% |
| !! | GCAGAAATTAGGCCTTATTT+GGG | - | chr4.2:88807170-88807189 | None:intergenic | 35.0% |
| !!! | ACCAATTTTTTTCCCAGGTA+AGG | + | chr4.2:88807224-88807243 | MS.gene79508:intron | 35.0% |
| !!! | CCAATTTTTTTCCCAGGTAA+GGG | + | chr4.2:88807225-88807244 | MS.gene79508:intron | 35.0% |
| !!! | GGTTTCCTTTTGATTTGGTT+TGG | + | chr4.2:88804455-88804474 | MS.gene79508:CDS | 35.0% |
| AAGAGGGGGAGTTATGATTA+TGG | + | chr4.2:88804691-88804710 | MS.gene79508:CDS | 40.0% | |
| AATACCGATAGAGAGTGAGA+AGG | + | chr4.2:88805222-88805241 | MS.gene79508:intron | 40.0% | |
| AGAGCATAAATCCTGCTTCA+GGG | + | chr4.2:88804821-88804840 | MS.gene79508:CDS | 40.0% | |
| AGTTATACCTTAGTCCATGG+AGG | - | chr4.2:88806566-88806585 | None:intergenic | 40.0% | |
| ATATGATGCTAAGGGGAAGA+GGG | + | chr4.2:88804630-88804649 | MS.gene79508:CDS | 40.0% | |
| ATGGACCGTCATCAATAACA+TGG | - | chr4.2:88806247-88806266 | None:intergenic | 40.0% | |
| CCCTTACCTGGGAAAAAAAT+TGG | - | chr4.2:88807228-88807247 | None:intergenic | 40.0% | |
| CGTCCAAATAATGGCAAATC+CGG | - | chr4.2:88805562-88805581 | None:intergenic | 40.0% | |
| CTCGAATATATTCCTGTTCC+AGG | - | chr4.2:88805632-88805651 | None:intergenic | 40.0% | |
| GGAAGTTATACCTTAGTCCA+TGG | - | chr4.2:88806569-88806588 | None:intergenic | 40.0% | |
| GTTATACCTTAGTCCATGGA+GGG | - | chr4.2:88806565-88806584 | None:intergenic | 40.0% | |
| GTTTGCTTTCGTTAGTAGAC+AGG | + | chr4.2:88804599-88804618 | MS.gene79508:CDS | 40.0% | |
| TCTACTAACGAAAGCAAACG+CGG | - | chr4.2:88804598-88804617 | None:intergenic | 40.0% | |
| TCTGAGCACAATACTATCAG+TGG | + | chr4.2:88806973-88806992 | MS.gene79508:intron | 40.0% | |
| TGAAACGTAGATCAGGAACT+CGG | + | chr4.2:88804662-88804681 | MS.gene79508:CDS | 40.0% | |
| TGACCGGATTTGCCATTATT+TGG | + | chr4.2:88805556-88805575 | MS.gene79508:CDS | 40.0% | |
| TGGAAATGAGACAATACGAG+AGG | + | chr4.2:88805849-88805868 | MS.gene79508:CDS | 40.0% | |
| TTATACCTTAGTCCATGGAG+GGG | - | chr4.2:88806564-88806583 | None:intergenic | 40.0% | |
| ! | ACAGTGTTTTCTGTCTGTGA+TGG | - | chr4.2:88806094-88806113 | None:intergenic | 40.0% |
| ! | ATATTGCTGCTTCCATCACA+AGG | - | chr4.2:88804781-88804800 | None:intergenic | 40.0% |
| ! | GGAAAGGGAGAATCTCTTTT+TGG | + | chr4.2:88805940-88805959 | MS.gene79508:CDS | 40.0% |
| ! | GTTAAGTAGTGTTGCTGTAG+CGG | + | chr4.2:88805102-88805121 | MS.gene79508:intron | 40.0% |
| !! | GATTTGGTTTGGGTGAAGAA+AGG | + | chr4.2:88804466-88804485 | MS.gene79508:CDS | 40.0% |
| ACAGCGGATATGATGCTAAG+GGG | + | chr4.2:88804623-88804642 | MS.gene79508:CDS | 45.0% | |
| CAGAGCATAAATCCTGCTTC+AGG | + | chr4.2:88804820-88804839 | MS.gene79508:CDS | 45.0% | |
| GAAGATGAGAGTTCGTGTTC+AGG | + | chr4.2:88804571-88804590 | MS.gene79508:CDS | 45.0% | |
| GACAGCGGATATGATGCTAA+GGG | + | chr4.2:88804622-88804641 | MS.gene79508:CDS | 45.0% | |
| GACTGAATGCAACATCAGAC+TGG | - | chr4.2:88804750-88804769 | None:intergenic | 45.0% | |
| GATATGATGCTAAGGGGAAG+AGG | + | chr4.2:88804629-88804648 | MS.gene79508:CDS | 45.0% | |
| GGCTTAGTGAATGGAAACGA+AGG | + | chr4.2:88806038-88806057 | MS.gene79508:CDS | 45.0% | |
| TATACCTTAGTCCATGGAGG+GGG | - | chr4.2:88806563-88806582 | None:intergenic | 45.0% | |
| TATGATATCGCGTCTGCAAG+AGG | + | chr4.2:88805808-88805827 | MS.gene79508:CDS | 45.0% | |
| TCTTGGAGAAAGGCTGAAGA+TGG | + | chr4.2:88806397-88806416 | MS.gene79508:CDS | 45.0% | |
| TGAGTTGCATTCGAAGTCAG+CGG | + | chr4.2:88806009-88806028 | MS.gene79508:CDS | 45.0% | |
| TTCTGTTACGCGTGCATGTA+TGG | - | chr4.2:88805351-88805370 | None:intergenic | 45.0% | |
| TTGTCTCCCAAGACACACTT+TGG | - | chr4.2:88807267-88807286 | None:intergenic | 45.0% | |
| TTGTGACCCCTTCGAAAGAT+AGG | - | chr4.2:88805054-88805073 | None:intergenic | 45.0% | |
| ! | TCTTTTCCTCTCCCTTACCT+GGG | - | chr4.2:88807239-88807258 | None:intergenic | 45.0% |
| !! | GGAGAAAGCGTCAATGGAAA+TGG | + | chr4.2:88805829-88805848 | MS.gene79508:CDS | 45.0% |
| !!! | TTTTTTCCCAGGTAAGGGAG+AGG | + | chr4.2:88807230-88807249 | MS.gene79508:intron | 45.0% |
| AACGTAGATCAGGAACTCGG+CGG | + | chr4.2:88804665-88804684 | MS.gene79508:CDS | 50.0% | |
| ACGCTAACTTTCCCTGAAGC+AGG | - | chr4.2:88804835-88804854 | None:intergenic | 50.0% | |
| AGGCTGCCAAAGTGTGTCTT+GGG | + | chr4.2:88807258-88807277 | MS.gene79508:CDS | 50.0% | |
| AGTCCTTGCTTGCCTTGTGA+TGG | + | chr4.2:88804766-88804785 | MS.gene79508:CDS | 50.0% | |
| CAGACGCGATATCATAGCCA+TGG | - | chr4.2:88805804-88805823 | None:intergenic | 50.0% | |
| CAGGTAAGGGAGAGGAAAAG+AGG | + | chr4.2:88807238-88807257 | MS.gene79508:intron | 50.0% | |
| CTTCCATCACAAGGCAAGCA+AGG | - | chr4.2:88804772-88804791 | None:intergenic | 50.0% | |
| GGACAGCGGATATGATGCTA+AGG | + | chr4.2:88804621-88804640 | MS.gene79508:CDS | 50.0% | |
| TCGTTAGTAGACAGGGACAG+CGG | + | chr4.2:88804607-88804626 | MS.gene79508:CDS | 50.0% | |
| ! | CTCTTTTCCTCTCCCTTACC+TGG | - | chr4.2:88807240-88807259 | None:intergenic | 50.0% |
| !! | ACGGTTGATAGTCCTGGAAC+AGG | + | chr4.2:88805617-88805636 | MS.gene79508:CDS | 50.0% |
| !! | GCAAGAGGAGAAAGCGTCAA+TGG | + | chr4.2:88805823-88805842 | MS.gene79508:CDS | 50.0% |
| !! | GCATCAACGGTTGATAGTCC+TGG | + | chr4.2:88805611-88805630 | MS.gene79508:CDS | 50.0% |
| ATTCGAAGTCAGCGGAGGTG+CGG | + | chr4.2:88806017-88806036 | MS.gene79508:CDS | 55.0% | |
| CAATTGAGGAATCCGGCACG+TGG | + | chr4.2:88806527-88806546 | MS.gene79508:CDS | 55.0% | |
| GAGGCTGCCAAAGTGTGTCT+TGG | + | chr4.2:88807257-88807276 | MS.gene79508:CDS | 55.0% | |
| GCTAGAGAAGGAGAGAGCTG+CGG | + | chr4.2:88805757-88805776 | MS.gene79508:CDS | 55.0% | |
| GTTGCATTCGAAGTCAGCGG+AGG | + | chr4.2:88806012-88806031 | MS.gene79508:CDS | 55.0% | |
| TACTGCTGCTGACGAAGCCA+TGG | + | chr4.2:88805784-88805803 | MS.gene79508:CDS | 55.0% | |
| TATTCGGTCTTGCCTGCGCA+TGG | - | chr4.2:88806266-88806285 | None:intergenic | 55.0% | |
| !! | ATTGATGACGGTCCATGCGC+AGG | + | chr4.2:88806251-88806270 | MS.gene79508:CDS | 55.0% |
| AGGAACTCGGCGGAGGAAGA+GGG | + | chr4.2:88804675-88804694 | MS.gene79508:CDS | 60.0% | |
| GTAGATCAGGAACTCGGCGG+AGG | + | chr4.2:88804668-88804687 | MS.gene79508:CDS | 60.0% | |
| ! | CGGAGGTGCGGCTTAGTGAA+TGG | + | chr4.2:88806029-88806048 | MS.gene79508:CDS | 60.0% |
| ! | GTTGCCCCCTCCATGGACTA+AGG | + | chr4.2:88806556-88806575 | MS.gene79508:CDS | 60.0% |
| CAGGAACTCGGCGGAGGAAG+AGG | + | chr4.2:88804674-88804693 | MS.gene79508:CDS | 65.0% | |
| GAACTCGGCGGAGGAAGAGG+GGG | + | chr4.2:88804677-88804696 | MS.gene79508:CDS | 65.0% | |
| GGAACTCGGCGGAGGAAGAG+GGG | + | chr4.2:88804676-88804695 | MS.gene79508:CDS | 65.0% | |
| GCGCATCGTTGCCCCCTCCA+TGG | + | chr4.2:88806549-88806568 | MS.gene79508:CDS | 70.0% | |
| GGCAACGATGCGCCACGTGC+CGG | - | chr4.2:88806542-88806561 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 88804442 | 88807300 | 88804442 | ID=MS.gene79508 |
| chr4.2 | mRNA | 88804442 | 88807300 | 88804442 | ID=MS.gene79508.t1;Parent=MS.gene79508 |
| chr4.2 | exon | 88804442 | 88804859 | 88804442 | ID=MS.gene79508.t1.exon1;Parent=MS.gene79508.t1 |
| chr4.2 | CDS | 88804442 | 88804859 | 88804442 | ID=cds.MS.gene79508.t1;Parent=MS.gene79508.t1 |
| chr4.2 | exon | 88805546 | 88806120 | 88805546 | ID=MS.gene79508.t1.exon2;Parent=MS.gene79508.t1 |
| chr4.2 | CDS | 88805546 | 88806120 | 88805546 | ID=cds.MS.gene79508.t1;Parent=MS.gene79508.t1 |
| chr4.2 | exon | 88806158 | 88806577 | 88806158 | ID=MS.gene79508.t1.exon3;Parent=MS.gene79508.t1 |
| chr4.2 | CDS | 88806158 | 88806577 | 88806158 | ID=cds.MS.gene79508.t1;Parent=MS.gene79508.t1 |
| chr4.2 | exon | 88807241 | 88807300 | 88807241 | ID=MS.gene79508.t1.exon4;Parent=MS.gene79508.t1 |
| chr4.2 | CDS | 88807241 | 88807300 | 88807241 | ID=cds.MS.gene79508.t1;Parent=MS.gene79508.t1 |
| Gene Sequence |
| Protein sequence |
