AlfalfaGEDB | MS.gene79508

M. sativa cultivar XinJiangDaYe / MS.gene79508

KEGG: -
GO: -
PFAM: PF04576.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79508.t1	XP_013454707.1	79.6	505	88	3	1	490	83	587	6.90E-200	706.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79508.t1	Q9LMC8	42.0	81	47	0	206	286	317	397	3.1e-07	58.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79508.t1	A0A072UHY6	79.6	505	88	3	1	490	83	587	4.9e-200	706.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050799	MS.gene79508	0.802469	5.53E-49	-1.69E-46
MS.gene052519	MS.gene79508	0.820053	8.40E-53	-1.69E-46
MS.gene053146	MS.gene79508	0.837777	4.25E-57	-1.69E-46
MS.gene054582	MS.gene79508	0.84401	9.85E-59	-1.69E-46
MS.gene055818	MS.gene79508	0.839096	1.94E-57	-1.69E-46
MS.gene058009	MS.gene79508	0.800034	1.74E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79508.t1	MTR_4g011550	89.109	505	40	3	1	490	83	587	0.0	842
MS.gene79508.t1	MTR_4g011540	64.251	414	87	9	1	387	83	462	2.13e-143	419
MS.gene79508.t1	MTR_1g070350	37.736	159	90	4	129	286	476	626	1.74e-18	89.4
MS.gene79508.t1	MTR_5g078300	47.826	69	36	0	200	268	627	695	7.28e-14	74.7
MS.gene79508.t1	MTR_4g093150	43.678	87	45	1	201	287	88	170	1.18e-13	70.5
MS.gene79508.t1	MTR_7g107000	41.584	101	59	0	191	291	68	168	2.49e-13	72.4
MS.gene79508.t1	MTR_1g054835	41.176	102	52	2	191	290	69	164	2.00e-12	69.7
MS.gene79508.t1	MTR_0168s0060	52.500	80	38	0	207	286	348	427	4.55e-12	68.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79508.t1	AT4G13630	30.693	505	221	22	13	436	69	525	1.02e-27	117
MS.gene79508.t1	AT4G13630	30.693	505	221	22	13	436	69	525	1.02e-27	117
MS.gene79508.t1	AT1G04890	31.421	401	207	11	67	427	7	379	7.66e-26	109
MS.gene79508.t1	AT1G70750	42.282	149	74	3	199	341	422	564	1.26e-20	95.9
MS.gene79508.t1	AT4G13160	60.396	101	39	1	189	288	112	212	1.26e-20	92.4
MS.gene79508.t1	AT5G16720	49.425	87	44	0	200	286	367	453	1.37e-19	92.4
MS.gene79508.t1	AT3G54740	27.301	326	177	11	206	485	87	398	6.34e-16	80.5
MS.gene79508.t1	AT3G54740	27.301	326	177	11	206	485	87	398	6.34e-16	80.5
MS.gene79508.t1	AT3G54740	27.301	326	177	11	206	485	87	398	6.34e-16	80.5
MS.gene79508.t1	AT3G54740	27.301	326	177	11	206	485	87	398	6.34e-16	80.5

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Find 88 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTCAGTTGAAGCTTT+TGG	0.244331	4.2:+88806472	MS.gene79508:CDS
AAATTGAAGTTCTTGGAGAA+AGG	0.486448	4.2:+88806387	MS.gene79508:CDS
AACAACAATGTTGTTCTCAT+TGG	0.345249	4.2:-88804506	None:intergenic
AACGTAGATCAGGAACTCGG+CGG	0.765032	4.2:+88804665	MS.gene79508:CDS
AATTAAACAATTGAGGAATC+CGG	0.482576	4.2:+88806520	MS.gene79508:CDS
ACAGCGGATATGATGCTAAG+GGG	0.698216	4.2:+88804623	MS.gene79508:CDS
ACGCTAACTTTCCCTGAAGC+AGG	0.512723	4.2:-88804832	None:intergenic
ACGGTTGATAGTCCTGGAAC+AGG	0.496528	4.2:+88805617	MS.gene79508:CDS
AGAGCATAAATCCTGCTTCA+GGG	0.576648	4.2:+88804821	MS.gene79508:CDS
AGATTCTTATAAGAAGGGAA+AGG	0.578868	4.2:+88805924	MS.gene79508:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTCTACTATCAAGAC+AGG	-	chr4.2:88806843-88806862	None:intergenic	30.0%
AAATGATACCTATCTTTCGA+AGG	+	chr4.2:88805043-88805062	MS.gene79508:intron	30.0%
AAATTGAAGTTCTTGGAGAA+AGG	+	chr4.2:88806387-88806406	MS.gene79508:CDS	30.0%
AACAACAATGTTGTTCTCAT+TGG	-	chr4.2:88804509-88804528	None:intergenic	30.0%
AACTAGAGGCTTATAATATC+CGG	-	chr4.2:88805492-88805511	None:intergenic	30.0%
AATACTATCAGTGGTCTATT+TGG	+	chr4.2:88806982-88807001	MS.gene79508:intron	30.0%
AATGATACCTATCTTTCGAA+GGG	+	chr4.2:88805044-88805063	MS.gene79508:intron	30.0%
AATGGAGATAGAAAACAAGT+TGG	-	chr4.2:88806590-88806609	None:intergenic	30.0%
AGATTCTTATAAGAAGGGAA+AGG	+	chr4.2:88805924-88805943	MS.gene79508:CDS	30.0%
ATCAACACTGTTGTCATATT+CGG	-	chr4.2:88806282-88806301	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	88804442	88807300	88804442	ID=MS.gene79508
chr4.2	mRNA	88804442	88807300	88804442	ID=MS.gene79508.t1;Parent=MS.gene79508
chr4.2	exon	88804442	88804859	88804442	ID=MS.gene79508.t1.exon1;Parent=MS.gene79508.t1
chr4.2	CDS	88804442	88804859	88804442	ID=cds.MS.gene79508.t1;Parent=MS.gene79508.t1
chr4.2	exon	88805546	88806120	88805546	ID=MS.gene79508.t1.exon2;Parent=MS.gene79508.t1
chr4.2	CDS	88805546	88806120	88805546	ID=cds.MS.gene79508.t1;Parent=MS.gene79508.t1
chr4.2	exon	88806158	88806577	88806158	ID=MS.gene79508.t1.exon3;Parent=MS.gene79508.t1
chr4.2	CDS	88806158	88806577	88806158	ID=cds.MS.gene79508.t1;Parent=MS.gene79508.t1
chr4.2	exon	88807241	88807300	88807241	ID=MS.gene79508.t1.exon4;Parent=MS.gene79508.t1
chr4.2	CDS	88807241	88807300	88807241	ID=cds.MS.gene79508.t1;Parent=MS.gene79508.t1

Gene Sequence

>MS.gene79508

ATGGCGGCGAAGAGGTTTCCTTTTGATTTGGTTTGGGTGAAGAAAGGTCGTTCTTTAGATAATTCCAATGAGAACAACATTGTTGTTGATGTTAAAGAAAAAACAAGTGATAATAGGATTGTTGAATTGGAAGATGAGAGTTCGTGTTCAGGTCCGCGTTTGCTTTCGTTAGTAGACAGGGACAGCGGATATGATGCTAAGGGGAAGAGGGTTTTGAGTTTGAAACGTAGATCAGGAACTCGGCGGAGGAAGAGGGGGAGTTATGATTATGGCAAACTGGATTCGGTTATTCGTTGTGATAGTTTCCAGTCTGATGTTGCATTCAGTCCTTGCTTGCCTTGTGATGGAAGCAGCAATATGATTGAAGATAGATTCAGTCAGAGCATAAATCCTGCTTCAGGGAAAGTTAGCGTGCACTGTAAGTGAAAAATCACCCACTTAGTTATCATTCATTCAATGATTTTAATAAAATCCTTTTTTGATCATGGTATCAATTTGCAGTCATCATATGTATGCTATATTATACTAGCTAGCTCACATATGTTACTGTATTTTGTATTCTTGCAAACTGCCATGCTCAACAACTTGTGATTATACCGGTAAATGATACCTATCTTTCGAAGGGGTCACAAGTTGTTAGAATTGATAGAGAGCAGCATTGTTAAGTAGTGTTGCTGTAGCGGAATTAAAACAAATCACTATTGTGAAATATTACACTATTTAGCTCTGTTAAGTAGAAAAATTTGAACAAACCGCTATTTTATGTGATCTGCAATTGGAAATACCGATAGAGAGTGAGAAGGAAAAAATTGAATTTGGATTTCGACAAATGCAGTTTCTAATTTATTTATTCAGATAAATATTGAACCAATAACAGAAACTAACAGTATAAATAACAGAACTATACCATACATGCACGCGTAACAGAACTAACAGTATAACAGAACTATAGCATAGCTAAAGCCTAAAACTTGAGTGCAAGTTGAATCTCATTTTCTTATTTAAAACTGTTTTGTATTTCTATATACTTTTGTTATTTTATGAATACCGGATATTATAAGCCTCTAGTTTTAACTTGCTTATTTTTTCTATCTTATTATTTAGACGATGAAGATGACCGGATTTGCCATTATTTGGACGAAAAAACCTGTCACAGTTATGAATTTAATGCATCAACGGTTGATAGTCCTGGAACAGGAATATATTCGAGTACTACACAAGAAAATATTGAGATTGTTGGAAATGAAGACAACCGTATAACAATGTATGAAAACACACTCGAAGAGAATGCTGCTTATGCTGATCTTTATCTAGAGCTAGAGAAGGAGAGAGCTGCGGCTGCTACTGCTGCTGACGAAGCCATGGCTATGATATCGCGTCTGCAAGAGGAGAAAGCGTCAATGGAAATGGAAATGAGACAATACGAGAGGTTAATTGAAGAAAGAGTTTCTTATGATGAAGAAGAGATGGATATTATGCAAGAGATTCTTATAAGAAGGGAAAGGGAGAATCTCTTTTTGGAAAAAGAACTTGAAAGTTATAGGCAAATGAGTTTGACAGAAAGTTGTGAGTTGCATTCGAAGTCAGCGGAGGTGCGGCTTAGTGAATGGAAACGAAGGTCGCCACTTTCATTTGAAACATATGATGAGCCATCACAGACAGAAAACACTGTACCTAATGTTAAGCAAGATTCTACCAATAATACATAAAGAAGAGTTGGATAAAAACACTGAATACAAGGATCGAGCATGTGATGATCTGCATAGCTCCTTTTATGATACTGAGTCTGATGTTCTTGATGTCCATGTTATTGATGACGGTCCATGCGCAGGCAAGACCGAATATGACAACAGTGTTGATGACTCGAAATGCAAATCTCTGCCTTTTGATTCTGAAAGTGATTCTTCGTGTTTAGTTCATAATGAAAGGGTAAGGATTGACAATGAAATTGAAGTTCTTGGAGAAAGGCTGAAGATGGTGAAACATGAAAAAGAAAAAATGACTATGTTTTCAGAGAAAGGAGAAAATGAAAAAGGTCAGTTGAAGCTTTTGGATGAGATAGCAAACCGTCTTCAGAAAATTAAACAATTGAGGAATCCGGCACGTGGCGCATCGTTGCCCCCTCCATGGACTAAGGTATAACTTCCAACTTGTTTTCTATCTCCATTTAAATTTTCTTCATGAACGTGTTTGTTTATAGAGGCATGTATGTGGTGAGTTTTAGCTATGTGCAAAAATTCATGTGATGATCGGATCTATAATTATTTCTAGGATGTTTCAATGCTTCTGTCATGTTAGAAGAACAACAAATATGTGTGCGTTTGACACAAATCCACAAATACAAATTCTGTTTGTGTACAAAATCAGACAGTGGATTGTAATTATAGTTGAGGTAAAACCTGTCTTGATAGTAGAGTTTTTGAGAAAGTTAATAATTTCAATTTCTTTTTGGCTTAGCTTCTTTGCACATCTATATTTCATAGCATTATGTCTTTACCTCTTTTTTATAATTCTGTCTGTCTGTCTGTCTGTCTGAGCACAATACTATCAGTGGTCTATTTGGATTGGTTGATTTGAGCTTATCCACTGACATAAAAACTTGTGAGATTGTTTGCGAGAGTTTGTGAAAGCAACTTATGACATGTCCATAAGCTGTTTTCAGCTTATATCCATAAACACTTACTTGATAAGTATATATGACATAAGTGTCGAATTGAGATGTTTACCCAAATAAGGCCTAATTTCTGCTATATTGCTTGATGACCATCGCTAATCTTAAATGACCAATTTTTTTCCCAGGTAAGGGAGAGGAAAAGAGGCTGCCAAAGTGTGTCTTGGGAGACAAGTGAAAGCTGCTAA

Protein sequence

>MS.gene79508.t1

MAAKRFPFDLVWVKKGRSLDNSNENNIVVDVKEKTSDNRIVELEDESSCSGPRLLSLVDRDSGYDAKGKRVLSLKRRSGTRRRKRGSYDYGKLDSVIRCDSFQSDVAFSPCLPCDGSSNMIEDRFSQSINPASGKVSVHYDEDDRICHYLDEKTCHSYEFNASTVDSPGTGIYSSTTQENIEIVGNEDNRITMYENTLEENAAYADLYLELEKERAAAATAADEAMAMISRLQEEKASMEMEMRQYERLIEERVSYDEEEMDIMQEILIRRERENLFLEKELESYRQMSLTESCELHSKSAEVRLSEWKRRSPLSFETYDEPSQTENTVPNLDKNTEYKDRACDDLHSSFYDTESDVLDVHVIDDGPCAGKTEYDNSVDDSKCKSLPFDSESDSSCLVHNERVRIDNEIEVLGERLKMVKHEKEKMTMFSEKGENEKGQLKLLDEIANRLQKIKQLRNPARGASLPPPWTKVRERKRGCQSVSWETSESC