Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054582.t1 | AET01618.1 | 66 | 106 | 15 | 2 | 101 | 203 | 87 | 174 | 1.10E-23 | 120.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054582.t1 | G7LI68 | 66.0 | 106 | 15 | 2 | 101 | 203 | 87 | 174 | 7.9e-24 | 120.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049343 | MS.gene054582 | 0.824141 | 9.48E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene054582 | 0.825164 | 5.44E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene054582 | 0.813868 | 2.06E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene054582 | 0.844106 | 9.29E-59 | -1.69E-46 |
| MS.gene053008 | MS.gene054582 | 0.806532 | 7.86E-50 | -1.69E-46 |
| MS.gene053146 | MS.gene054582 | 0.992377 | 6.36E-193 | -1.69E-46 |
| MS.gene053900 | MS.gene054582 | 0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene055818 | 0.839787 | 1.29E-57 | -1.69E-46 |
| MS.gene054582 | MS.gene057855 | 0.820186 | 7.83E-53 | -1.69E-46 |
| MS.gene054582 | MS.gene058009 | 0.802348 | 5.85E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene058625 | 0.801764 | 7.72E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene058979 | 0.80236 | 5.82E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene060322 | 0.810228 | 1.28E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene061980 | 0.815102 | 1.10E-51 | -1.69E-46 |
| MS.gene054582 | MS.gene067173 | 0.803466 | 3.44E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene067898 | 0.815378 | 9.53E-52 | -1.69E-46 |
| MS.gene054582 | MS.gene068526 | 0.802614 | 5.16E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene070210 | 0.81184 | 5.72E-51 | -1.69E-46 |
| MS.gene054582 | MS.gene072601 | 0.800136 | 1.66E-48 | -1.69E-46 |
| MS.gene054582 | MS.gene072942 | 0.800968 | 1.12E-48 | -1.69E-46 |
| MS.gene054582 | MS.gene073008 | 0.802812 | 4.70E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene073853 | 0.801055 | 1.08E-48 | -1.69E-46 |
| MS.gene054582 | MS.gene07420 | 0.802289 | 6.02E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene074606 | 0.80553 | 1.28E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene08813 | 0.835405 | 1.71E-56 | -1.69E-46 |
| MS.gene054582 | MS.gene08853 | 0.823026 | 1.73E-53 | -1.69E-46 |
| MS.gene054582 | MS.gene09277 | 0.833587 | 4.90E-56 | -1.69E-46 |
| MS.gene054582 | MS.gene20809 | 0.806586 | 7.65E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene21562 | 0.821134 | 4.75E-53 | -1.69E-46 |
| MS.gene054582 | MS.gene24623 | 0.824313 | 8.64E-54 | -1.69E-46 |
| MS.gene054582 | MS.gene24626 | 0.819064 | 1.41E-52 | -1.69E-46 |
| MS.gene054582 | MS.gene24628 | 0.815624 | 8.40E-52 | -1.69E-46 |
| MS.gene054582 | MS.gene31022 | 0.822095 | 2.84E-53 | -1.69E-46 |
| MS.gene054582 | MS.gene32893 | 0.821628 | 3.65E-53 | -1.69E-46 |
| MS.gene054582 | MS.gene33468 | 0.830187 | 3.38E-55 | -1.69E-46 |
| MS.gene054582 | MS.gene35611 | 0.8349 | 2.29E-56 | -1.69E-46 |
| MS.gene054582 | MS.gene39408 | 0.828481 | 8.78E-55 | -1.69E-46 |
| MS.gene054582 | MS.gene39882 | 0.806943 | 6.44E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene40799 | 0.805542 | 1.27E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene44058 | 0.804057 | 2.59E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene44179 | 0.807131 | 5.87E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene44510 | 0.829458 | 5.09E-55 | -1.69E-46 |
| MS.gene054582 | MS.gene45641 | 0.82372 | 1.19E-53 | -1.69E-46 |
| MS.gene054582 | MS.gene49320 | 0.81058 | 1.07E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene50031 | 0.807332 | 5.32E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene51511 | 0.817835 | 2.68E-52 | -1.69E-46 |
| MS.gene054582 | MS.gene51788 | 0.826603 | 2.48E-54 | -1.69E-46 |
| MS.gene054582 | MS.gene52357 | 0.828408 | 9.14E-55 | -1.69E-46 |
| MS.gene054582 | MS.gene54686 | 0.801602 | 8.33E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene61331 | 0.812555 | 4.00E-51 | -1.69E-46 |
| MS.gene054582 | MS.gene63793 | 0.825143 | 5.50E-54 | -1.69E-46 |
| MS.gene054582 | MS.gene66186 | 0.801967 | 7.01E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene66990 | 0.807693 | 4.46E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene67746 | 0.835957 | 1.24E-56 | -1.69E-46 |
| MS.gene054582 | MS.gene69891 | 0.806296 | 8.81E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene71853 | 0.802055 | 6.73E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene73498 | 0.81884 | 1.59E-52 | -1.69E-46 |
| MS.gene054582 | MS.gene73564 | 0.824113 | 9.62E-54 | -1.69E-46 |
| MS.gene054582 | MS.gene73883 | 0.805091 | 1.58E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene77015 | 0.806103 | 9.68E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene79508 | 0.84401 | 9.85E-59 | -1.69E-46 |
| MS.gene054582 | MS.gene81792 | 0.800904 | 1.16E-48 | -1.69E-46 |
| MS.gene054582 | MS.gene87407 | 0.830877 | 2.29E-55 | -1.69E-46 |
| MS.gene054582 | MS.gene88171 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene93311 | 0.822111 | 2.82E-53 | -1.69E-46 |
| MS.gene054582 | MS.gene95625 | 0.800471 | 1.42E-48 | -1.69E-46 |
| MS.gene054582 | MS.gene99547 | 0.800575 | 1.35E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054582.t1 | MTR_8g018100 | 70.000 | 130 | 18 | 2 | 101 | 227 | 87 | 198 | 3.09e-50 | 165 |
| MS.gene054582.t1 | MTR_8g018100 | 44.000 | 125 | 49 | 6 | 18 | 139 | 131 | 237 | 7.32e-13 | 66.6 |
| MS.gene054582.t1 | MTR_1g115220 | 80.882 | 68 | 10 | 1 | 157 | 221 | 21 | 88 | 1.04e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGATGATTACCTTTGATTT+TGG | 0.169382 | 4.1:+87209864 | None:intergenic |
| AGATCTTCGCGAAGCTAAAT+TGG | 0.247966 | 4.1:-87210767 | MS.gene054582:CDS |
| CTAGTTGAATCAAAGCTTCT+TGG | 0.282657 | 4.1:+87210249 | None:intergenic |
| TCGCTTTCTAAATTTATATT+CGG | 0.331894 | 4.1:-87210860 | MS.gene054582:CDS |
| CCGAAGGATCATCCATTATA+CGG | 0.375242 | 4.1:-87210886 | MS.gene054582:CDS |
| TGCGTGTCAACGGGTGCAAC+AGG | 0.392472 | 4.1:+87209904 | None:intergenic |
| AGGAGAAGAACGAACCATTT+GGG | 0.393055 | 4.1:+87210197 | None:intergenic |
| AATCAAAGCTTCTTGGGTAA+TGG | 0.393707 | 4.1:+87210256 | None:intergenic |
| TCTTCCACCTCTCCTGGTGC+AGG | 0.394878 | 4.1:+87209401 | None:intergenic |
| AGAAAGCGACAACCGTATAA+TGG | 0.406074 | 4.1:+87210874 | None:intergenic |
| GGGATATGATAAGGAAGATA+AGG | 0.437427 | 4.1:-87209450 | MS.gene054582:CDS |
| CTACAATTGTGCGTGTCAAC+GGG | 0.442078 | 4.1:+87209895 | None:intergenic |
| ATGGCAGTGCTTTCCCCAAA+TGG | 0.446026 | 4.1:-87210211 | MS.gene054582:intron |
| CTTCCACCTCTCCTGGTGCA+GGG | 0.450689 | 4.1:+87209402 | None:intergenic |
| GTTAACTCTTCCACCTCTCC+TGG | 0.451248 | 4.1:+87209395 | None:intergenic |
| AGACTAAAATTTCACCTCTC+AGG | 0.451846 | 4.1:+87210688 | None:intergenic |
| CCTTGCCGCCACCATGGACT+TGG | 0.453782 | 4.1:-87210914 | None:intergenic |
| CCGTATAATGGATGATCCTT+CGG | 0.457729 | 4.1:+87210886 | None:intergenic |
| AAAAGAACCAACTGCGAAAA+GGG | 0.458718 | 4.1:-87209588 | MS.gene054582:CDS |
| TAGTTGAATCAAAGCTTCTT+GGG | 0.458718 | 4.1:+87210250 | None:intergenic |
| AAAAGAACCAACTGCGAAAA+GGG | 0.458718 | 4.1:-87210579 | MS.gene054582:CDS |
| ATATTCGGACGAGGCACTCT+TGG | 0.459564 | 4.1:-87210845 | MS.gene054582:CDS |
| TCACAAATCTTCTTTGCTGC+AGG | 0.460278 | 4.1:+87210335 | None:intergenic |
| GGATCAGGAGGGATATGATA+AGG | 0.465606 | 4.1:-87209459 | MS.gene054582:CDS |
| CAAAAGAACCAACTGCGAAA+AGG | 0.465631 | 4.1:-87209589 | MS.gene054582:CDS |
| CAAAAGAACCAACTGCGAAA+AGG | 0.465631 | 4.1:-87210580 | MS.gene054582:CDS |
| GGAAGGCCAATCTGATGATA+AGG | 0.467371 | 4.1:-87209429 | MS.gene054582:CDS |
| GCTACAATTGTGCGTGTCAA+CGG | 0.476888 | 4.1:+87209894 | None:intergenic |
| AGCCCCTGCACCAGGAGAGG+TGG | 0.481468 | 4.1:-87209405 | MS.gene054582:CDS |
| GGGCTTCCTTATCATCAGAT+TGG | 0.481597 | 4.1:+87209423 | None:intergenic |
| TTCCACCTCTCCTGGTGCAG+GGG | 0.483421 | 4.1:+87209403 | None:intergenic |
| GTTATATAAGTACGAAGATA+AGG | 0.511157 | 4.1:-87210821 | MS.gene054582:CDS |
| AGTTAACAGATGAGGAGTAG+TGG | 0.515594 | 4.1:-87209379 | None:intergenic |
| GATAAGGAAGCCCCTGCACC+AGG | 0.518868 | 4.1:-87209413 | MS.gene054582:CDS |
| CTGCGAAAAGGGCTAAAGTT+GGG | 0.522171 | 4.1:-87210568 | MS.gene054582:CDS |
| ACTGCGAAAAGGGCTAAAGT+TGG | 0.541934 | 4.1:-87210569 | MS.gene054582:CDS |
| ACTGCGAAAAGGGCTAAAGT+TGG | 0.558971 | 4.1:-87209578 | MS.gene054582:CDS |
| GGAAGCCCCTGCACCAGGAG+AGG | 0.576902 | 4.1:-87209408 | MS.gene054582:CDS |
| GGTGGAAGAGTTAACAGATG+AGG | 0.581307 | 4.1:-87209387 | MS.gene054582:CDS |
| AAAAGGGCTAAAGTTGGGAA+AGG | 0.581404 | 4.1:-87210563 | MS.gene054582:CDS |
| CTTCGGCAACTCCAAGTCCA+TGG | 0.589099 | 4.1:+87210903 | None:intergenic |
| TATTTATGTTTAGGATCAGG+AGG | 0.589442 | 4.1:-87209471 | MS.gene054582:intron |
| TCTAAATTTATATTCGGACG+AGG | 0.591042 | 4.1:-87210854 | MS.gene054582:CDS |
| AGCCTTGAAGCCAAAATCAA+AGG | 0.601595 | 4.1:-87209874 | MS.gene054582:intron |
| CATGGACTTGGAGTTGCCGA+AGG | 0.601960 | 4.1:-87210902 | MS.gene054582:CDS |
| CTAGAAATAAGTGACAAAGA+TGG | 0.605930 | 4.1:-87210230 | MS.gene054582:CDS |
| ATTTATGTTTAGGATCAGGA+GGG | 0.610871 | 4.1:-87209470 | MS.gene054582:intron |
| AAAGGGCTAAAGTTGGGAAA+GGG | 0.618574 | 4.1:-87210562 | MS.gene054582:CDS |
| TATGATAAGGAAGATAAGGA+AGG | 0.621270 | 4.1:-87209446 | MS.gene054582:CDS |
| GGAGAAGAACGAACCATTTG+GGG | 0.661729 | 4.1:+87210198 | None:intergenic |
| CTGAAGTGAAGAAACCTGAG+AGG | 0.670696 | 4.1:-87210702 | MS.gene054582:intron |
| ATATAAGTACGAAGATAAGG+TGG | 0.691646 | 4.1:-87210818 | MS.gene054582:CDS |
| CTGAAGTGAAGAAACCCGAG+AGG | 0.719762 | 4.1:-87209721 | MS.gene054582:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTGATTTTATTTAATT+TGG | - | chr4.1:87210507-87210526 | MS.gene054582:intron | 10.0% |
| !!! | TTTAGGTTTATTTTTTTTTT+TGG | - | chr4.1:87209656-87209675 | MS.gene054582:intron | 10.0% |
| !!! | TTTTTTTTTTGTTAGTATTT+AGG | - | chr4.1:87209639-87209658 | MS.gene054582:intron | 10.0% |
| !! | AATATTCACAAACTAAAATT+GGG | + | chr4.1:87210600-87210619 | None:intergenic | 15.0% |
| !!! | AAGTATGTTTTCTTTTAATT+TGG | - | chr4.1:87209775-87209794 | MS.gene054582:intron | 15.0% |
| !!! | AGTATGTTTTCTTTTAATTT+GGG | - | chr4.1:87209776-87209795 | MS.gene054582:intron | 15.0% |
| !!! | TTGATAATAATTCCTAATTA+GGG | + | chr4.1:87210458-87210477 | None:intergenic | 15.0% |
| !!! | TTTAGGTTTATCTATTTTTT+TGG | - | chr4.1:87210647-87210666 | MS.gene054582:intron | 15.0% |
| !!! | TTTGATAATAATTCCTAATT+AGG | + | chr4.1:87210459-87210478 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGGAATTTTGT+AGG | - | chr4.1:87209667-87209686 | MS.gene054582:intron | 15.0% |
| !! | ATATTCACAAACTAAAATTG+GGG | + | chr4.1:87210599-87210618 | None:intergenic | 20.0% |
| !! | CAATATTCACAAACTAAAAT+TGG | + | chr4.1:87210601-87210620 | None:intergenic | 20.0% |
| !! | TCGCTTTCTAAATTTATATT+CGG | - | chr4.1:87209423-87209442 | MS.gene054582:CDS | 20.0% |
| !!! | CTATTTTTTTGGAATTTTGT+AGG | - | chr4.1:87210658-87210677 | MS.gene054582:intron | 20.0% |
| ! | AAAAATTCTCACAAAAGTCT+TGG | - | chr4.1:87209989-87210008 | MS.gene054582:intron | 25.0% |
| ! | ATTACTCATAAACCCTAATT+AGG | - | chr4.1:87210443-87210462 | MS.gene054582:intron | 25.0% |
| ! | GAATCATTTCTTCAAAAACA+TGG | + | chr4.1:87209923-87209942 | None:intergenic | 25.0% |
| ! | GTTATATAAGTACGAAGATA+AGG | - | chr4.1:87209462-87209481 | MS.gene054582:intron | 25.0% |
| ! | TTGAGTGTAATTATAAGTGT+CGG | - | chr4.1:87210185-87210204 | MS.gene054582:intron | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | chr4.1:87210153-87210172 | None:intergenic | 25.0% |
| !! | CTATATTTATGTTTAGGATC+AGG | - | chr4.1:87210809-87210828 | MS.gene054582:CDS | 25.0% |
| !! | TCTTGTTTGTGTTAGTATTT+AGG | - | chr4.1:87210624-87210643 | MS.gene054582:intron | 25.0% |
| !! | TTGTGTTAGTATTTAGGTTT+AGG | - | chr4.1:87210630-87210649 | MS.gene054582:intron | 25.0% |
| !! | TTTTAGTCTGTGAATATTGT+TGG | - | chr4.1:87209609-87209628 | MS.gene054582:intron | 25.0% |
| ATATAAGTACGAAGATAAGG+TGG | - | chr4.1:87209465-87209484 | MS.gene054582:intron | 30.0% | |
| CTAGAAATAAGTGACAAAGA+TGG | - | chr4.1:87210053-87210072 | MS.gene054582:intron | 30.0% | |
| TAGTTGAATCAAAGCTTCTT+GGG | + | chr4.1:87210036-87210055 | None:intergenic | 30.0% | |
| TATGATAAGGAAGATAAGGA+AGG | - | chr4.1:87210837-87210856 | MS.gene054582:CDS | 30.0% | |
| TCTAAATTTATATTCGGACG+AGG | - | chr4.1:87209429-87209448 | MS.gene054582:CDS | 30.0% | |
| TGAGTGTAATTATAAGTGTC+GGG | - | chr4.1:87210186-87210205 | MS.gene054582:intron | 30.0% | |
| ! | AGTTGGAGTATGTTTTCTTT+TGG | - | chr4.1:87210722-87210741 | MS.gene054582:CDS | 30.0% |
| ! | ATTTATGTTTAGGATCAGGA+GGG | - | chr4.1:87210813-87210832 | MS.gene054582:CDS | 30.0% |
| ! | GTTGGAGTATGTTTTCTTTT+GGG | - | chr4.1:87210723-87210742 | MS.gene054582:CDS | 30.0% |
| ! | TATTTATGTTTAGGATCAGG+AGG | - | chr4.1:87210812-87210831 | MS.gene054582:CDS | 30.0% |
| !! | ACGATGATTACCTTTGATTT+TGG | + | chr4.1:87210422-87210441 | None:intergenic | 30.0% |
| !! | CTGGTGCTATATTTATGTTT+AGG | - | chr4.1:87210803-87210822 | MS.gene054582:CDS | 30.0% |
| AAAAGAACCAACTGCGAAAA+GGG | - | chr4.1:87209704-87209723 | MS.gene054582:intron | 35.0% | |
| AATCAAAGCTTCTTGGGTAA+TGG | + | chr4.1:87210030-87210049 | None:intergenic | 35.0% | |
| AGACTAAAATTTCACCTCTC+AGG | + | chr4.1:87209598-87209617 | None:intergenic | 35.0% | |
| CTAGTTGAATCAAAGCTTCT+TGG | + | chr4.1:87210037-87210056 | None:intergenic | 35.0% | |
| GGGATATGATAAGGAAGATA+AGG | - | chr4.1:87210833-87210852 | MS.gene054582:CDS | 35.0% | |
| ! | GAGTGTAATTATAAGTGTCG+GGG | - | chr4.1:87210187-87210206 | MS.gene054582:intron | 35.0% |
| ! | TTGTTTAAAATCGAAGCAGC+AGG | - | chr4.1:87209881-87209900 | MS.gene054582:CDS | 35.0% |
| !! | GCAGTTGGTTCTTTTGAATT+TGG | + | chr4.1:87209699-87209718 | None:intergenic | 35.0% |
| !!! | TACCTTTGATTTTGGCTTCA+AGG | + | chr4.1:87210414-87210433 | None:intergenic | 35.0% |
| AAAAGGGCTAAAGTTGGGAA+AGG | - | chr4.1:87209720-87209739 | MS.gene054582:intron | 40.0% | |
| AAAGGGCTAAAGTTGGGAAA+GGG | - | chr4.1:87209721-87209740 | MS.gene054582:intron | 40.0% | |
| AAGGAGAAGAACGAACCATT+TGG | + | chr4.1:87210090-87210109 | None:intergenic | 40.0% | |
| AGAAAGCGACAACCGTATAA+TGG | + | chr4.1:87209412-87209431 | None:intergenic | 40.0% | |
| AGATCTTCGCGAAGCTAAAT+TGG | - | chr4.1:87209516-87209535 | MS.gene054582:intron | 40.0% | |
| AGCCTTGAAGCCAAAATCAA+AGG | - | chr4.1:87210409-87210428 | MS.gene054582:intron | 40.0% | |
| AGGAGAAGAACGAACCATTT+GGG | + | chr4.1:87210089-87210108 | None:intergenic | 40.0% | |
| CAAAAGAACCAACTGCGAAA+AGG | - | chr4.1:87209703-87209722 | MS.gene054582:intron | 40.0% | |
| CCGAAGGATCATCCATTATA+CGG | - | chr4.1:87209397-87209416 | MS.gene054582:CDS | 40.0% | |
| CTGTGAATATTGTTGGACTC+TGG | - | chr4.1:87209616-87209635 | MS.gene054582:intron | 40.0% | |
| GGGAAAAAATTTCACCTCTC+GGG | + | chr4.1:87210579-87210598 | None:intergenic | 40.0% | |
| GGGCTTCTATGAATTGTGTT+TGG | - | chr4.1:87209796-87209815 | MS.gene054582:intron | 40.0% | |
| GGGGAAAAAATTTCACCTCT+CGG | + | chr4.1:87210580-87210599 | None:intergenic | 40.0% | |
| TATGAAGCATGGACACTTCT+CGG | + | chr4.1:87210222-87210241 | None:intergenic | 40.0% | |
| TCACAAATCTTCTTTGCTGC+AGG | + | chr4.1:87209951-87209970 | None:intergenic | 40.0% | |
| ! | TTTAAAATCGAAGCAGCAGG+AGG | - | chr4.1:87209884-87209903 | MS.gene054582:CDS | 40.0% |
| !! | CCGTATAATGGATGATCCTT+CGG | + | chr4.1:87209400-87209419 | None:intergenic | 40.0% |
| !! | TGTAATTATAAGTGTCGGGG+CGG | - | chr4.1:87210190-87210209 | MS.gene054582:intron | 40.0% |
| !!! | TTTGCTCTGTTTTCTGAAGC+TGG | - | chr4.1:87210784-87210803 | MS.gene054582:CDS | 40.0% |
| ACTGCGAAAAGGGCTAAAGT+TGG | - | chr4.1:87209714-87209733 | MS.gene054582:intron | 45.0% | |
| CTACAATTGTGCGTGTCAAC+GGG | + | chr4.1:87210391-87210410 | None:intergenic | 45.0% | |
| CTGAAGTGAAGAAACCTGAG+AGG | - | chr4.1:87209581-87209600 | MS.gene054582:CDS | 45.0% | |
| CTGCGAAAAGGGCTAAAGTT+GGG | - | chr4.1:87209715-87209734 | MS.gene054582:intron | 45.0% | |
| GATCAGAGTCCTATGAAGCA+TGG | + | chr4.1:87210233-87210252 | None:intergenic | 45.0% | |
| GCTACAATTGTGCGTGTCAA+CGG | + | chr4.1:87210392-87210411 | None:intergenic | 45.0% | |
| GGAAGGCCAATCTGATGATA+AGG | - | chr4.1:87210854-87210873 | MS.gene054582:CDS | 45.0% | |
| GGAGAAGAACGAACCATTTG+GGG | + | chr4.1:87210088-87210107 | None:intergenic | 45.0% | |
| GGATCAGGAGGGATATGATA+AGG | - | chr4.1:87210824-87210843 | MS.gene054582:CDS | 45.0% | |
| GGGCTTCCTTATCATCAGAT+TGG | + | chr4.1:87210863-87210882 | None:intergenic | 45.0% | |
| GGTGGAAGAGTTAACAGATG+AGG | - | chr4.1:87210896-87210915 | MS.gene054582:CDS | 45.0% | |
| ! | ACTTTAGCCCTTTTCGCAGT+TGG | + | chr4.1:87209714-87209733 | None:intergenic | 45.0% |
| ! | TCTGGTGTCAGTAGAAGAGA+AGG | + | chr4.1:87210109-87210128 | None:intergenic | 45.0% |
| !! | GAGAAGTGTCCATGCTTCAT+AGG | - | chr4.1:87210221-87210240 | MS.gene054582:CDS | 45.0% |
| ATGGCAGTGCTTTCCCCAAA+TGG | - | chr4.1:87210072-87210091 | MS.gene054582:intron | 50.0% | |
| CTGAAGTGAAGAAACCCGAG+AGG | - | chr4.1:87210562-87210581 | MS.gene054582:CDS | 50.0% | |
| GATTGTGTCCATGTCGTGTC+TGG | + | chr4.1:87210127-87210146 | None:intergenic | 50.0% | |
| GCATGGACACTTCTCGGATT+AGG | + | chr4.1:87210216-87210235 | None:intergenic | 50.0% | |
| GTTAACTCTTCCACCTCTCC+TGG | + | chr4.1:87210891-87210910 | None:intergenic | 50.0% | |
| TACTGACACCAGACACGACA+TGG | - | chr4.1:87210116-87210135 | MS.gene054582:intron | 50.0% | |
| ! | ATATTCGGACGAGGCACTCT+TGG | - | chr4.1:87209438-87209457 | MS.gene054582:CDS | 50.0% |
| CTTCCACCTCTCCTGGTGCA+GGG | + | chr4.1:87210884-87210903 | None:intergenic | 60.0% | |
| GATAAGGAAGCCCCTGCACC+AGG | - | chr4.1:87210870-87210889 | MS.gene054582:CDS | 60.0% | |
| TCTTCCACCTCTCCTGGTGC+AGG | + | chr4.1:87210885-87210904 | None:intergenic | 60.0% | |
| TGCGTGTCAACGGGTGCAAC+AGG | + | chr4.1:87210382-87210401 | None:intergenic | 60.0% | |
| TTCCACCTCTCCTGGTGCAG+GGG | + | chr4.1:87210883-87210902 | None:intergenic | 60.0% | |
| AGCCCCTGCACCAGGAGAGG+TGG | - | chr4.1:87210878-87210897 | MS.gene054582:CDS | 70.0% | |
| GGAAGCCCCTGCACCAGGAG+AGG | - | chr4.1:87210875-87210894 | MS.gene054582:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 87209382 | 87210923 | 87209382 | ID=MS.gene054582 |
| chr4.1 | mRNA | 87209382 | 87210923 | 87209382 | ID=MS.gene054582.t1;Parent=MS.gene054582 |
| chr4.1 | exon | 87210703 | 87210923 | 87210703 | ID=MS.gene054582.t1.exon1;Parent=MS.gene054582.t1 |
| chr4.1 | CDS | 87210703 | 87210923 | 87210703 | ID=cds.MS.gene054582.t1;Parent=MS.gene054582.t1 |
| chr4.1 | exon | 87210529 | 87210616 | 87210529 | ID=MS.gene054582.t1.exon2;Parent=MS.gene054582.t1 |
| chr4.1 | CDS | 87210529 | 87210616 | 87210529 | ID=cds.MS.gene054582.t1;Parent=MS.gene054582.t1 |
| chr4.1 | exon | 87210212 | 87210405 | 87210212 | ID=MS.gene054582.t1.exon3;Parent=MS.gene054582.t1 |
| chr4.1 | CDS | 87210212 | 87210405 | 87210212 | ID=cds.MS.gene054582.t1;Parent=MS.gene054582.t1 |
| chr4.1 | exon | 87209875 | 87209948 | 87209875 | ID=MS.gene054582.t1.exon4;Parent=MS.gene054582.t1 |
| chr4.1 | CDS | 87209875 | 87209948 | 87209875 | ID=cds.MS.gene054582.t1;Parent=MS.gene054582.t1 |
| chr4.1 | exon | 87209722 | 87209767 | 87209722 | ID=MS.gene054582.t1.exon5;Parent=MS.gene054582.t1 |
| chr4.1 | CDS | 87209722 | 87209767 | 87209722 | ID=cds.MS.gene054582.t1;Parent=MS.gene054582.t1 |
| chr4.1 | exon | 87209577 | 87209625 | 87209577 | ID=MS.gene054582.t1.exon6;Parent=MS.gene054582.t1 |
| chr4.1 | CDS | 87209577 | 87209625 | 87209577 | ID=cds.MS.gene054582.t1;Parent=MS.gene054582.t1 |
| chr4.1 | exon | 87209382 | 87209480 | 87209382 | ID=MS.gene054582.t1.exon7;Parent=MS.gene054582.t1 |
| chr4.1 | CDS | 87209382 | 87209480 | 87209382 | ID=cds.MS.gene054582.t1;Parent=MS.gene054582.t1 |
| Gene Sequence |
| Protein sequence |
