AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79565

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79565.t1 MTR_7g011060 99.587 242 1 0 1 242 1 242 1.25e-180 495
MS.gene79565.t1 MTR_6g012520 86.066 244 32 1 1 242 1 244 1.66e-143 401
MS.gene79565.t1 MTR_5g041700 75.502 249 50 3 1 240 1 247 2.02e-135 381
MS.gene79565.t1 MTR_4g081950 73.896 249 54 3 1 240 37 283 1.55e-131 372
MS.gene79565.t1 MTR_3g435430 78.475 223 40 1 26 240 25 247 1.63e-131 371
MS.gene79565.t1 MTR_3g094060 77.130 223 43 1 26 240 31 253 8.98e-129 364
MS.gene79565.t1 MTR_3g094040 69.960 253 63 3 1 240 1 253 3.81e-128 363
MS.gene79565.t1 MTR_3g466790 69.478 249 67 2 1 240 6 254 8.93e-126 357
MS.gene79565.t1 MTR_3g466760 69.076 249 68 2 1 240 12 260 4.06e-125 355
MS.gene79565.t1 MTR_5g075320 66.397 247 75 1 2 240 5 251 1.24e-123 351
MS.gene79565.t1 MTR_5g079950 65.600 250 74 3 1 240 10 257 2.80e-117 335
MS.gene79565.t1 MTR_7g061720 65.323 248 75 3 4 240 9 256 6.24e-115 329
MS.gene79565.t1 MTR_2g097030 63.563 247 80 2 4 240 12 258 1.85e-112 323
MS.gene79565.t1 MTR_4g063975 63.265 245 80 2 6 240 12 256 4.11e-108 312
MS.gene79565.t1 MTR_1g085460 63.636 231 72 4 20 238 24 254 4.77e-104 302
MS.gene79565.t1 MTR_7g111010 60.816 245 83 5 3 235 5 248 3.94e-102 297
MS.gene79565.t1 MTR_1g026020 62.054 224 74 3 26 238 29 252 3.63e-101 295
MS.gene79565.t1 MTR_7g110990 64.732 224 67 4 24 235 10 233 2.53e-100 292
MS.gene79565.t1 MTR_7g013120 54.251 247 103 4 2 239 6 251 5.83e-92 271
MS.gene79565.t1 MTR_4g124340 56.444 225 85 4 25 238 60 282 1.84e-91 271
MS.gene79565.t1 MTR_7g013150 52.653 245 108 2 2 238 6 250 2.03e-91 270
MS.gene79565.t1 MTR_8g058990 58.296 223 85 2 23 237 27 249 1.69e-90 267
MS.gene79565.t1 MTR_7g013140 55.102 245 102 2 1 237 3 247 7.52e-90 266
MS.gene79565.t1 MTR_8g464350 53.942 241 103 2 3 235 8 248 5.14e-89 263
MS.gene79565.t1 MTR_5g076950 53.304 227 97 2 25 242 40 266 3.36e-86 257
MS.gene79565.t1 MTR_0040s0140 48.571 245 114 3 6 240 14 256 5.29e-81 243
MS.gene79565.t1 MTR_4g102450 51.230 244 107 4 4 236 14 256 7.73e-81 243
MS.gene79565.t1 MTR_5g011210 52.444 225 97 3 24 238 35 259 2.13e-80 242
MS.gene79565.t1 MTR_2g090255 46.154 247 118 3 4 240 11 252 1.71e-77 234
MS.gene79565.t1 MTR_3g064510 47.458 236 107 5 23 241 50 285 1.77e-73 225
MS.gene79565.t1 MTR_6g012500 79.508 122 19 1 127 242 161 282 6.68e-64 201
MS.gene79565.t1 MTR_0008s0120 41.772 237 90 1 1 237 7 195 1.87e-58 184
MS.gene79565.t1 MTR_2g090270 34.667 225 131 8 26 238 35 255 7.37e-30 112
MS.gene79565.t1 MTR_2g090265 33.725 255 145 11 1 238 6 253 5.88e-29 110
MS.gene79565.t1 MTR_0122s0020 33.200 250 148 10 4 238 16 261 1.28e-27 106
MS.gene79565.t1 MTR_0118s0070 32.579 221 129 10 31 235 53 269 2.67e-25 100
MS.gene79565.t1 MTR_4g028640 32.743 226 127 9 26 235 42 258 6.30e-25 99.8
MS.gene79565.t1 MTR_0809s0010 32.456 228 128 11 25 235 46 264 1.71e-24 98.6
MS.gene79565.t1 MTR_0122s0020 37.500 168 90 8 26 182 41 204 2.39e-20 86.3
MS.gene79565.t1 MTR_4g098930 29.644 253 151 12 1 235 3 246 8.28e-20 85.5
MS.gene79565.t1 MTR_5g013440 29.130 230 149 10 23 241 26 252 1.66e-18 82.0
MS.gene79565.t1 MTR_4g099370 30.357 224 141 10 23 235 25 244 4.39e-18 80.9
MS.gene79565.t1 MTR_1g085365 57.143 56 24 0 185 240 4 59 2.74e-16 71.2
MS.gene79565.t1 MTR_4g075790 27.854 219 125 9 37 235 32 237 3.09e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79565.t1 AT1G69530 76.800 250 47 3 1 240 1 249 1.54e-137 386
MS.gene79565.t1 AT1G69530 76.800 250 47 3 1 240 1 249 1.54e-137 386
MS.gene79565.t1 AT2G03090 77.510 249 45 3 1 240 6 252 5.83e-137 385
MS.gene79565.t1 AT3G29030 83.945 218 34 1 26 242 38 255 8.89e-137 385
MS.gene79565.t1 AT1G69530 77.236 246 45 3 1 236 1 245 3.37e-136 384
MS.gene79565.t1 AT1G26770 76.955 243 46 2 6 240 8 248 7.64e-134 377
MS.gene79565.t1 AT1G26770 76.955 243 46 2 6 240 18 258 9.03e-134 377
MS.gene79565.t1 AT5G56320 70.325 246 63 2 3 240 8 251 1.55e-128 364
MS.gene79565.t1 AT5G56320 70.325 246 63 2 3 240 8 251 1.55e-128 364
MS.gene79565.t1 AT5G56320 70.325 246 63 2 3 240 8 251 6.68e-128 364
MS.gene79565.t1 AT2G40610 67.742 248 67 3 2 240 10 253 2.17e-122 348
MS.gene79565.t1 AT2G39700 65.613 253 69 4 4 240 5 255 2.15e-119 341
MS.gene79565.t1 AT5G02260 64.516 248 78 2 3 240 9 256 8.51e-118 337
MS.gene79565.t1 AT5G05290 64.257 249 75 3 1 240 12 255 4.70e-116 332
MS.gene79565.t1 AT3G55500 62.400 250 84 2 1 240 9 258 4.74e-116 332
MS.gene79565.t1 AT1G69530 72.174 230 51 4 1 220 1 227 6.20e-116 332
MS.gene79565.t1 AT1G69530 68.000 250 39 4 1 240 1 219 1.01e-115 330
MS.gene79565.t1 AT2G37640 70.667 225 56 2 26 240 36 260 2.06e-115 331
MS.gene79565.t1 AT2G28950 62.745 255 80 3 1 240 1 255 7.46e-111 319
MS.gene79565.t1 AT2G37640 68.269 208 56 2 43 240 28 235 1.07e-102 298
MS.gene79565.t1 AT4G01630 58.704 247 89 5 2 235 3 249 4.43e-101 294
MS.gene79565.t1 AT1G20190 62.273 220 72 3 28 236 28 247 7.55e-98 286
MS.gene79565.t1 AT5G39280 55.263 228 96 1 17 238 45 272 3.84e-92 272
MS.gene79565.t1 AT5G39300 55.357 224 94 1 21 238 50 273 6.86e-91 269
MS.gene79565.t1 AT5G39270 54.955 222 94 1 23 238 55 276 4.10e-89 265
MS.gene79565.t1 AT5G39290 54.091 220 95 1 25 238 57 276 8.98e-88 261
MS.gene79565.t1 AT5G39310 53.304 227 99 2 19 238 83 309 2.32e-83 251
MS.gene79565.t1 AT1G12560 50.820 244 110 3 2 235 12 255 1.24e-82 248
MS.gene79565.t1 AT1G62980 50.820 244 108 4 6 238 11 253 5.74e-82 246
MS.gene79565.t1 AT3G15370 50.820 244 110 6 7 240 8 251 4.17e-80 241
MS.gene79565.t1 AT3G03220 50.000 226 104 2 25 241 39 264 7.94e-79 238
MS.gene79565.t1 AT5G39260 53.636 220 100 2 21 238 40 259 2.82e-78 237
MS.gene79565.t1 AT1G20190 57.754 187 68 3 61 236 2 188 5.55e-76 228
MS.gene79565.t1 AT4G38210 45.817 251 124 3 3 241 5 255 5.38e-75 228
MS.gene79565.t1 AT3G15370 45.255 274 110 7 7 240 8 281 1.37e-73 225
MS.gene79565.t1 AT2G20750 33.193 238 145 7 14 238 28 264 9.69e-33 120
MS.gene79565.t1 AT4G28250 32.950 261 148 10 1 238 1 257 1.76e-31 117
MS.gene79565.t1 AT4G28250 31.538 260 147 10 1 238 1 251 7.62e-28 107
MS.gene79565.t1 AT1G65680 32.456 228 135 9 23 235 44 267 1.18e-25 101
MS.gene79565.t1 AT2G20750 34.463 177 104 5 14 179 28 203 1.10e-24 97.8
MS.gene79565.t1 AT2G45110 30.859 256 143 11 1 235 11 253 3.78e-22 92.0
MS.gene79565.t1 AT1G65681 33.014 209 123 9 40 235 12 216 1.04e-21 90.1
MS.gene79565.t1 AT4G28250 32.487 197 111 8 1 184 8 195 7.97e-21 87.4
MS.gene79565.t1 AT4G28250 32.663 199 105 8 1 179 1 190 3.28e-20 85.9
MS.gene79565.t1 AT4G17030 30.455 220 142 8 25 235 26 243 6.74e-20 85.9
MS.gene79565.t1 AT3G60570 28.251 223 142 7 26 235 34 251 6.32e-18 80.9
MS.gene79565.t1 AT3G45970 26.667 210 128 9 44 235 14 215 1.93e-13 68.2
MS.gene79565.t1 AT3G45960 27.805 205 121 9 49 235 46 241 3.35e-12 64.7
MS.gene79565.t1 AT4G38400 26.768 198 132 9 49 235 47 242 1.62e-11 62.8
MS.gene79565.t1 AT3G45960 28.646 192 110 9 62 235 11 193 2.24e-11 62.0
MS.gene79565.t1 AT3G45970 25.854 205 126 9 49 235 46 242 6.55e-11 61.2

Find 66 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTAACTCTTACCTTAA+TGG 0.204631 7.3:+87044618 MS.gene79565:CDS
AATGCTCATGCTACTTTCTA+TGG 0.220166 7.3:+87043209 MS.gene79565:CDS
TACATGGTTTCTCATGTAAA+TGG 0.221650 7.3:+87043161 MS.gene79565:CDS
GCTCCTGCTGGATGGTCTTT+TGG 0.239807 7.3:+87044702 MS.gene79565:CDS
ATAGGTGGGGCTTGTGGATA+TGG 0.246425 7.3:+87043633 MS.gene79565:intron
TTCCATAACCTTGGCTATAA+AGG 0.251122 7.3:-87043659 None:intergenic
AGGAAAGACTTTGTCCATTA+AGG 0.266746 7.3:-87044632 None:intergenic
TATGGTGGAAGTGATGCTTC+TGG 0.307440 7.3:+87043227 MS.gene79565:CDS
TCTAGATCTTGAACCTTTGA+TGG 0.316697 7.3:-87044559 None:intergenic
ACCACCAGGTGGACAGAAAT+TGG 0.328400 7.3:-87043805 None:intergenic
GGCAAGCCATGTCAAGGAAT+TGG 0.336529 7.3:+87044583 MS.gene79565:CDS
GCAAGCCATGTCAAGGAATT+GGG 0.340806 7.3:+87044584 MS.gene79565:CDS
AACCTTTATAGCCAAGGTTA+TGG 0.350030 7.3:+87043657 MS.gene79565:CDS
TCATTCAATGCTGCTCCTGC+TGG 0.373533 7.3:+87044690 MS.gene79565:CDS
GAAAGATCAAAATGGTGATT+AGG 0.383324 7.3:-87043840 None:intergenic
ATTGGTGGCAGTAACTATAA+TGG 0.410055 7.3:-87043787 None:intergenic
TTAGTACTTGTCACAAATGT+TGG 0.427387 7.3:+87044510 MS.gene79565:CDS
GGAATTAGATTCACCATCAA+TGG 0.441161 7.3:+87044471 MS.gene79565:CDS
GTCACAAATGTTGGAGGTGC+TGG 0.460146 7.3:+87044519 MS.gene79565:CDS
CTGTATTTGTTCCATAACCT+TGG 0.469990 7.3:-87043668 None:intergenic
TTTGTTGTCACCACAAGTAA+TGG 0.472648 7.3:+87044654 MS.gene79565:CDS
CACATTGCTCAATATAGAGC+AGG 0.475970 7.3:+87043879 MS.gene79565:CDS
GATCCACAATGGTGTAATCC+TGG 0.478438 7.3:+87043762 MS.gene79565:CDS
ATGGTGGAAGTGATGCTTCT+GGG 0.482585 7.3:+87043228 MS.gene79565:CDS
GTGAGATGCAAGAGAAGAGG+TGG 0.483025 7.3:+87044450 MS.gene79565:CDS
GAAGTAAGAATGTCCATTGA+TGG 0.484459 7.3:-87044484 None:intergenic
TAGGTTGAGAAAGATCAAAA+TGG 0.486595 7.3:-87043848 None:intergenic
GCCGTGGTGGTCATGCTAGC+TGG 0.491703 7.3:+87043183 MS.gene79565:CDS
TCAAAGGTTCAAGATCTAGA+TGG 0.498022 7.3:+87044562 MS.gene79565:CDS
AGATCAAAATGGTGATTAGG+AGG 0.519211 7.3:-87043837 None:intergenic
TCAATGCTGCTCCTGCTGGA+TGG 0.529981 7.3:+87044694 MS.gene79565:CDS
AAGTGATGCTTCTGGGACAA+TGG 0.531264 7.3:+87043235 MS.gene79565:CDS
GCCACCAATTTCTGTCCACC+TGG 0.533315 7.3:+87043801 MS.gene79565:CDS
AGTTACCTTCTGTAAGCTAC+AGG 0.533493 7.3:-87043909 None:intergenic
GCAGTAACTATAATGGATCC+AGG 0.539906 7.3:-87043780 None:intergenic
AGGGTGAGATGCAAGAGAAG+AGG 0.548973 7.3:+87044447 MS.gene79565:intron
GTACTTGTCACAAATGTTGG+AGG 0.553223 7.3:+87044513 MS.gene79565:CDS
GTACATTCTGTGGCCATCAA+AGG 0.555005 7.3:+87044546 MS.gene79565:CDS
TATGGAAACCTTTATAGCCA+AGG 0.558405 7.3:+87043651 MS.gene79565:CDS
AGTGATGCTTCTGGGACAAT+GGG 0.566887 7.3:+87043236 MS.gene79565:CDS
ATTTCTGTCCACCTGGTGGT+TGG 0.569910 7.3:+87043808 MS.gene79565:CDS
GTTGAACTGCCTTCCAGTGT+AGG 0.570697 7.3:-87044730 None:intergenic
GCTCATGCTACTTTCTATGG+TGG 0.573969 7.3:+87043212 MS.gene79565:CDS
GTTTCTCATGTAAATGGCCG+TGG 0.575595 7.3:+87043167 MS.gene79565:CDS
TTCAACAACGGATTGAGTTG+TGG 0.577104 7.3:+87043711 MS.gene79565:CDS
CAAGCCATGTCAAGGAATTG+GGG 0.577427 7.3:+87044585 MS.gene79565:CDS
TGCTGGTGATGTACATTCTG+TGG 0.583608 7.3:+87044536 MS.gene79565:CDS
TGACCAAAAGACCATCCAGC+AGG 0.595163 7.3:-87044705 None:intergenic
GGAGGGTCACACCAACCACC+AGG 0.606947 7.3:-87043819 None:intergenic
TTGGTCAGACCTACACTGGA+AGG 0.609630 7.3:+87044721 MS.gene79565:CDS
CTAGATGGCAAGCCATGTCA+AGG 0.612177 7.3:+87044577 MS.gene79565:CDS
ACCAATTTCTGTCCACCTGG+TGG 0.612750 7.3:+87043804 MS.gene79565:CDS
TTGTACCTGTAGCTTACAGA+AGG 0.627293 7.3:+87043904 MS.gene79565:CDS
ACCAGGTGGACAGAAATTGG+TGG 0.636241 7.3:-87043802 None:intergenic
GATCAAAATGGTGATTAGGA+GGG 0.641492 7.3:-87043836 None:intergenic
GATCCAGGATTACACCATTG+TGG 0.642750 7.3:-87043765 None:intergenic
ACATTGCTCAATATAGAGCA+GGG 0.646744 7.3:+87043880 MS.gene79565:CDS
ATTACTTGTGGTGACAACAA+AGG 0.647547 7.3:-87044652 None:intergenic
TCTCATGTAAATGGCCGTGG+TGG 0.654852 7.3:+87043170 MS.gene79565:CDS
AGCACTGCACTATTCAACAA+CGG 0.662167 7.3:+87043699 MS.gene79565:CDS
GGGTCACACCAACCACCAGG+TGG 0.687412 7.3:-87043816 None:intergenic
TCCAGCTAGCATGACCACCA+CGG 0.691439 7.3:-87043184 None:intergenic
AAGCCATGTCAAGGAATTGG+GGG 0.694892 7.3:+87044586 MS.gene79565:CDS
CACAAGTAATGGTCACAGTG+TGG 0.698815 7.3:+87044665 MS.gene79565:CDS
CACACTGTGACCATTACTTG+TGG 0.700863 7.3:-87044664 None:intergenic
AATGTGTGAATGATCCACAA+TGG 0.752509 7.3:+87043751 MS.gene79565:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAACATTTTTCTTTTAT+AGG + chr7.3:87043615-87043634 MS.gene79565:intron 10.0%
!!! TTGTTTTTGTAAAATAAAAT+CGG + chr7.3:87044010-87044029 MS.gene79565:intron 10.0%
!!! TGATAATTATTTTTTGTTCT+TGG + chr7.3:87044417-87044436 MS.gene79565:intron 15.0%
!! ATAAATTTCATGAAGTTACA+CGG - chr7.3:87043492-87043511 None:intergenic 20.0%
!!! AACATTTTTCTTTTATAGGT+GGG + chr7.3:87043619-87043638 MS.gene79565:intron 20.0%
!!! AGAATTTATTTTCTGTATGT+CGG - chr7.3:87044358-87044377 None:intergenic 20.0%
!!! TAACATTTTTCTTTTATAGG+TGG + chr7.3:87043618-87043637 MS.gene79565:intron 20.0%
!!! TATATAGTAACTTTTACGTT+AGG - chr7.3:87044291-87044310 None:intergenic 20.0%
!!! TGAATGAAGTTTTCATAATT+TGG - chr7.3:87044189-87044208 None:intergenic 20.0%
! TTAGTAAAAACGAAGTTTGA+AGG + chr7.3:87044317-87044336 MS.gene79565:intron 25.0%
! TTTGAAGATAAAGTCGATTA+TGG + chr7.3:87044153-87044172 MS.gene79565:intron 25.0%
!! ACATTTTTCTTTTATAGGTG+GGG + chr7.3:87043620-87043639 MS.gene79565:intron 25.0%
!! TTCAGAAAGCAAACAAATTT+TGG + chr7.3:87043388-87043407 MS.gene79565:intron 25.0%
!! TTTTGTTCTTGGATTTTGAA+GGG + chr7.3:87044428-87044447 MS.gene79565:intron 25.0%
!! TTTTTGTTCTTGGATTTTGA+AGG + chr7.3:87044427-87044446 MS.gene79565:intron 25.0%
!!! AAGTAACTTTTTAGCTATCT+AGG - chr7.3:87044124-87044143 None:intergenic 25.0%
!!! GCATTTCAACGATTTTTTTA+CGG - chr7.3:87043533-87043552 None:intergenic 25.0%
AACAAACATCTTAACGAACT+TGG + chr7.3:87043301-87043320 MS.gene79565:intron 30.0%
CAAAGTAACTCTTACCTTAA+TGG + chr7.3:87044618-87044637 MS.gene79565:CDS 30.0%
GAAAGATCAAAATGGTGATT+AGG - chr7.3:87043843-87043862 None:intergenic 30.0%
GACTTGAAATGATTGATGTT+TGG + chr7.3:87044224-87044243 MS.gene79565:intron 30.0%
TACATGGTTTCTCATGTAAA+TGG + chr7.3:87043161-87043180 MS.gene79565:CDS 30.0%
TGAGCAATGTGTTGAAAAAT+AGG - chr7.3:87043870-87043889 None:intergenic 30.0%
TTAGTACTTGTCACAAATGT+TGG + chr7.3:87044510-87044529 MS.gene79565:CDS 30.0%
TTTACGGTTGAAGATTTCTA+CGG - chr7.3:87043517-87043536 None:intergenic 30.0%
! TAGGTTGAGAAAGATCAAAA+TGG - chr7.3:87043851-87043870 None:intergenic 30.0%
! TTTTGTGTGCATTGTGTATT+TGG + chr7.3:87043966-87043985 MS.gene79565:intron 30.0%
!!! TCTTCTTGCTATTTTCTACA+TGG + chr7.3:87043145-87043164 MS.gene79565:CDS 30.0%
AACCTTTATAGCCAAGGTTA+TGG + chr7.3:87043657-87043676 MS.gene79565:CDS 35.0%
AAGACTATAGTGTGTGCTTA+GGG - chr7.3:87044392-87044411 None:intergenic 35.0%
AATGTGTGAATGATCCACAA+TGG + chr7.3:87043751-87043770 MS.gene79565:CDS 35.0%
ACATTGCTCAATATAGAGCA+GGG + chr7.3:87043880-87043899 MS.gene79565:CDS 35.0%
AGATCAAAATGGTGATTAGG+AGG - chr7.3:87043840-87043859 None:intergenic 35.0%
AGGAAAGACTTTGTCCATTA+AGG - chr7.3:87044635-87044654 None:intergenic 35.0%
ATTACTTGTGGTGACAACAA+AGG - chr7.3:87044655-87044674 None:intergenic 35.0%
CTGTATTTGTTCCATAACCT+TGG - chr7.3:87043671-87043690 None:intergenic 35.0%
GAAGTAAGAATGTCCATTGA+TGG - chr7.3:87044487-87044506 None:intergenic 35.0%
GATCAAAATGGTGATTAGGA+GGG - chr7.3:87043839-87043858 None:intergenic 35.0%
GGAATTAGATTCACCATCAA+TGG + chr7.3:87044471-87044490 MS.gene79565:CDS 35.0%
TATGGAAACCTTTATAGCCA+AGG + chr7.3:87043651-87043670 MS.gene79565:CDS 35.0%
TCAAAGGTTCAAGATCTAGA+TGG + chr7.3:87044562-87044581 MS.gene79565:CDS 35.0%
TCTAGATCTTGAACCTTTGA+TGG - chr7.3:87044562-87044581 None:intergenic 35.0%
TTCCATAACCTTGGCTATAA+AGG - chr7.3:87043662-87043681 None:intergenic 35.0%
! ATTGGTGGCAGTAACTATAA+TGG - chr7.3:87043790-87043809 None:intergenic 35.0%
! TTTGTTGTCACCACAAGTAA+TGG + chr7.3:87044654-87044673 MS.gene79565:CDS 35.0%
!! AATGCTCATGCTACTTTCTA+TGG + chr7.3:87043209-87043228 MS.gene79565:CDS 35.0%
AGCACTGCACTATTCAACAA+CGG + chr7.3:87043699-87043718 MS.gene79565:CDS 40.0%
AGTTACCTTCTGTAAGCTAC+AGG - chr7.3:87043912-87043931 None:intergenic 40.0%
AGTTCATGCAGACAACACAT+TGG + chr7.3:87043340-87043359 MS.gene79565:intron 40.0%
CAAGACTATAGTGTGTGCTT+AGG - chr7.3:87044393-87044412 None:intergenic 40.0%
CACATTGCTCAATATAGAGC+AGG + chr7.3:87043879-87043898 MS.gene79565:CDS 40.0%
CTTAACGAACTTGGAGTAAC+CGG + chr7.3:87043310-87043329 MS.gene79565:intron 40.0%
GACAGTTGAGATTTCAAGCT+TGG - chr7.3:87043437-87043456 None:intergenic 40.0%
GTACTTGTCACAAATGTTGG+AGG + chr7.3:87044513-87044532 MS.gene79565:CDS 40.0%
TTGTACCTGTAGCTTACAGA+AGG + chr7.3:87043904-87043923 MS.gene79565:CDS 40.0%
!! GCAGTAACTATAATGGATCC+AGG - chr7.3:87043783-87043802 None:intergenic 40.0%
!! TTCAACAACGGATTGAGTTG+TGG + chr7.3:87043711-87043730 MS.gene79565:CDS 40.0%
AAGCCATGTCAAGGAATTGG+GGG + chr7.3:87044586-87044605 MS.gene79565:CDS 45.0%
CAAGCCATGTCAAGGAATTG+GGG + chr7.3:87044585-87044604 MS.gene79565:CDS 45.0%
CAAGGAATTGGGGGCAAAAT+TGG + chr7.3:87044595-87044614 MS.gene79565:CDS 45.0%
CACAAGTAATGGTCACAGTG+TGG + chr7.3:87044665-87044684 MS.gene79565:CDS 45.0%
CACACTGTGACCATTACTTG+TGG - chr7.3:87044667-87044686 None:intergenic 45.0%
GACAACACATTGGTCATCGT+TGG + chr7.3:87043350-87043369 MS.gene79565:intron 45.0%
GATCCACAATGGTGTAATCC+TGG + chr7.3:87043762-87043781 MS.gene79565:CDS 45.0%
GATCCAGGATTACACCATTG+TGG - chr7.3:87043768-87043787 None:intergenic 45.0%
GCAAGCCATGTCAAGGAATT+GGG + chr7.3:87044584-87044603 MS.gene79565:CDS 45.0%
GTACATTCTGTGGCCATCAA+AGG + chr7.3:87044546-87044565 MS.gene79565:CDS 45.0%
GTTTCTCATGTAAATGGCCG+TGG + chr7.3:87043167-87043186 MS.gene79565:CDS 45.0%
TCTGCATGAACTTGTGACTC+CGG - chr7.3:87043332-87043351 None:intergenic 45.0%
! ATGGTGGAAGTGATGCTTCT+GGG + chr7.3:87043228-87043247 MS.gene79565:CDS 45.0%
! TATGGTGGAAGTGATGCTTC+TGG + chr7.3:87043227-87043246 MS.gene79565:CDS 45.0%
! TCTTTTATAGGTGGGGCTTG+TGG + chr7.3:87043627-87043646 MS.gene79565:intron 45.0%
! TCTTTTGGTCAGACCTACAC+TGG + chr7.3:87044717-87044736 MS.gene79565:CDS 45.0%
! TGCTGGTGATGTACATTCTG+TGG + chr7.3:87044536-87044555 MS.gene79565:CDS 45.0%
!! AAGTGATGCTTCTGGGACAA+TGG + chr7.3:87043235-87043254 MS.gene79565:CDS 45.0%
!! AGTGATGCTTCTGGGACAAT+GGG + chr7.3:87043236-87043255 MS.gene79565:CDS 45.0%
!! GCTCATGCTACTTTCTATGG+TGG + chr7.3:87043212-87043231 MS.gene79565:CDS 45.0%
ACCAATTTCTGTCCACCTGG+TGG + chr7.3:87043804-87043823 MS.gene79565:CDS 50.0%
ACCACCAGGTGGACAGAAAT+TGG - chr7.3:87043808-87043827 None:intergenic 50.0%
ACCAGGTGGACAGAAATTGG+TGG - chr7.3:87043805-87043824 None:intergenic 50.0%
AGGGTGAGATGCAAGAGAAG+AGG + chr7.3:87044447-87044466 MS.gene79565:intron 50.0%
ATAGGTGGGGCTTGTGGATA+TGG + chr7.3:87043633-87043652 MS.gene79565:intron 50.0%
ATTTCTGTCCACCTGGTGGT+TGG + chr7.3:87043808-87043827 MS.gene79565:CDS 50.0%
CGATCCAACGACTACTGATG+TGG + chr7.3:87043463-87043482 MS.gene79565:intron 50.0%
CTAGATGGCAAGCCATGTCA+AGG + chr7.3:87044577-87044596 MS.gene79565:CDS 50.0%
GGCAAGCCATGTCAAGGAAT+TGG + chr7.3:87044583-87044602 MS.gene79565:CDS 50.0%
GTCACCACATCAGTAGTCGT+TGG - chr7.3:87043470-87043489 None:intergenic 50.0%
GTGAGATGCAAGAGAAGAGG+TGG + chr7.3:87044450-87044469 MS.gene79565:CDS 50.0%
GTTGAACTGCCTTCCAGTGT+AGG - chr7.3:87044733-87044752 None:intergenic 50.0%
TCATTCAATGCTGCTCCTGC+TGG + chr7.3:87044690-87044709 MS.gene79565:CDS 50.0%
TCTCATGTAAATGGCCGTGG+TGG + chr7.3:87043170-87043189 MS.gene79565:CDS 50.0%
TGACCAAAAGACCATCCAGC+AGG - chr7.3:87044708-87044727 None:intergenic 50.0%
TTGCCCCCAATTCCTTGACA+TGG - chr7.3:87044592-87044611 None:intergenic 50.0%
TTGGTCAGACCTACACTGGA+AGG + chr7.3:87044721-87044740 MS.gene79565:CDS 50.0%
! GTCACAAATGTTGGAGGTGC+TGG + chr7.3:87044519-87044538 MS.gene79565:CDS 50.0%
GCCACCAATTTCTGTCCACC+TGG + chr7.3:87043801-87043820 MS.gene79565:CDS 55.0%
TCAATGCTGCTCCTGCTGGA+TGG + chr7.3:87044694-87044713 MS.gene79565:CDS 55.0%
TCCAGCTAGCATGACCACCA+CGG - chr7.3:87043187-87043206 None:intergenic 55.0%
! GCTCCTGCTGGATGGTCTTT+TGG + chr7.3:87044702-87044721 MS.gene79565:CDS 55.0%
GCCGTGGTGGTCATGCTAGC+TGG + chr7.3:87043183-87043202 MS.gene79565:CDS 65.0%
GGAGGGTCACACCAACCACC+AGG - chr7.3:87043822-87043841 None:intergenic 65.0%
GGGTCACACCAACCACCAGG+TGG - chr7.3:87043819-87043838 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 87043128 87044758 87043128 ID=MS.gene79565
chr7.3 mRNA 87043128 87044758 87043128 ID=MS.gene79565.t1;Parent=MS.gene79565
chr7.3 exon 87043128 87043257 87043128 ID=MS.gene79565.t1.exon1;Parent=MS.gene79565.t1
chr7.3 CDS 87043128 87043257 87043128 ID=cds.MS.gene79565.t1;Parent=MS.gene79565.t1
chr7.3 exon 87043637 87043925 87043637 ID=MS.gene79565.t1.exon2;Parent=MS.gene79565.t1
chr7.3 CDS 87043637 87043925 87043637 ID=cds.MS.gene79565.t1;Parent=MS.gene79565.t1
chr7.3 exon 87044449 87044758 87044449 ID=MS.gene79565.t1.exon3;Parent=MS.gene79565.t1
chr7.3 CDS 87044449 87044758 87044449 ID=cds.MS.gene79565.t1;Parent=MS.gene79565.t1
Gene Sequence

>MS.gene79565

ATGTCTCTTCTTGCTCTTCTTCTTGCTATTTTCTACATGGTTTCTCATGTAAATGGCCGTGGTGGTCATGCTAGCTGGATTAATGCTCATGCTACTTTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTATGCATACTTACATGAATGTAACTGACATCTCAACTATGTCAACAAACATCTTAACGAACTTGGAGTAACCGGAGTCACAAGTTCATGCAGACAACACATTGGTCATCGTTGGATCGAGATCAGACAGTTCAGAAAGCAAACAAATTTTGGTTTAATTTAAAATTCTAAAAATACCAAGCTTGAAATCTCAACTGTCTTATCTCGATCCAACGACTACTGATGTGGTGACCGTGTAACTTCATGAAATTTATGACCGTAGAAATCTTCAACCGTAAAAAAATCGTTGAAATGCTTGCATAAATGTAACTAAACTTTATGTTAGTCATAATTTTGTTCTAAGTTTTTTCACATGCTTAATAACATTTTTCTTTTATAGGTGGGGCTTGTGGATATGGAAACCTTTATAGCCAAGGTTATGGAACAAATACAGCAGCATTGAGCACTGCACTATTCAACAACGGATTGAGTTGTGGTGCATGTTATGAAATTAAATGTGTGAATGATCCACAATGGTGTAATCCTGGATCCATTATAGTTACTGCCACCAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCTAATCACCATTTTGATCTTTCTCAACCTATTTTTCAACACATTGCTCAATATAGAGCAGGGATTGTACCTGTAGCTTACAGAAGGTAACTTCACTTTTTCATTTTTTTTTCTCTGCTCTATTATTTTTGTGTGCATTGTGTATTTGGAAAACAAGATTTTGTTAAATTTTGTTTTTGTAAAATAAAATCGGTTAAACTTTAGTTTTCGTAAAGTGATTGATGTTTGAATATCTTTTATCTGAAAACAAGTTTATTGTAAAATTTAGTGTAAATTTTTAACCTAGATAGCTAAAAAGTTACTTTTCATGAGATTTGAAGATAAAGTCGATTATGGCATGCAGTCACCAAATTATGAAAACTTCATTCAATTAAAATTTAGTTTGACTTGAAATGATTGATGTTTGGACGTCTTTTGTTCAGAAATCAGTTTCTTATAAATTTTTCAACCTAACGTAAAAGTTACTATATAGCACTTTTAGTAAAAACGAAGTTTGAAGGCAAAATCAATTTTGACCGACATACAGAAAATAAATTCTAATATTTTTTACCCTAAGCACACACTATAGTCTTGAAATTGATAATTATTTTTTGTTCTTGGATTTTGAAGGGTGAGATGCAAGAGAAGAGGTGGAATTAGATTCACCATCAATGGACATTCTTACTTCAATTTAGTACTTGTCACAAATGTTGGAGGTGCTGGTGATGTACATTCTGTGGCCATCAAAGGTTCAAGATCTAGATGGCAAGCCATGTCAAGGAATTGGGGGCAAAATTGGCAAAGTAACTCTTACCTTAATGGACAAAGTCTTTCCTTTGTTGTCACCACAAGTAATGGTCACAGTGTGGTTTCATTCAATGCTGCTCCTGCTGGATGGTCTTTTGGTCAGACCTACACTGGAAGGCAGTTCAACTATTAA
Protein sequence

>MS.gene79565.t1

MSLLALLLAIFYMVSHVNGRGGHASWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPQWCNPGSIIVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCKRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRSRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSFNAAPAGWSFGQTYTGRQFNY