AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049221

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049221.t1 MTR_3g097260 97.085 686 13 3 1 684 25 705 0.0 1360
MS.gene049221.t1 MTR_8g095170 74.036 674 144 11 16 684 20 667 0.0 972
MS.gene049221.t1 MTR_5g459450 65.330 698 198 8 18 683 47 732 0.0 906
MS.gene049221.t1 MTR_3g073100 62.534 726 212 12 5 684 21 732 0.0 880
MS.gene049221.t1 MTR_8g095170 73.675 566 132 8 16 577 20 572 0.0 826
MS.gene049221.t1 MTR_1g050740 50.820 732 280 13 25 683 56 780 0.0 696
MS.gene049221.t1 MTR_8g039100 53.165 711 273 10 25 683 48 750 0.0 692
MS.gene049221.t1 MTR_7g089950 51.023 733 276 12 26 683 67 791 0.0 686
MS.gene049221.t1 MTR_3g014650 51.257 716 266 12 25 683 84 773 0.0 666
MS.gene049221.t1 MTR_1g062740 41.272 802 291 14 26 680 47 815 0.0 555
MS.gene049221.t1 MTR_8g088930 37.532 770 355 18 26 682 9 765 6.11e-155 467
MS.gene049221.t1 MTR_8g088930 40.449 89 53 0 116 204 7 95 2.94e-13 73.6
MS.gene049221.t1 MTR_8g088930 37.321 769 357 17 26 682 9 764 9.02e-155 466
MS.gene049221.t1 MTR_8g088930 40.449 89 53 0 116 204 7 95 3.06e-13 73.6
MS.gene049221.t1 MTR_8g088930 39.864 587 283 12 26 546 9 591 2.27e-130 400
MS.gene049221.t1 MTR_8g088930 40.449 89 53 0 116 204 7 95 5.73e-13 72.8
MS.gene049221.t1 MTR_8g088930 39.864 587 283 12 26 546 9 591 2.74e-130 400
MS.gene049221.t1 MTR_8g088930 40.449 89 53 0 116 204 7 95 5.89e-13 72.8
MS.gene049221.t1 MTR_3g005910 79.167 72 15 0 408 479 1 72 1.75e-33 123
MS.gene049221.t1 MTR_8g080860 40.000 175 105 0 26 200 16 190 3.93e-32 126
MS.gene049221.t1 MTR_8g080860 36.478 159 101 0 30 188 112 270 1.79e-21 95.5
MS.gene049221.t1 MTR_8g080860 38.406 138 85 0 29 166 134 271 8.58e-21 93.6
MS.gene049221.t1 MTR_8g080860 33.918 171 113 0 30 200 89 259 2.16e-20 92.4
MS.gene049221.t1 MTR_8g080860 40.000 175 105 0 26 200 12 186 4.52e-32 126
MS.gene049221.t1 MTR_8g080860 36.478 159 101 0 30 188 108 266 2.07e-21 95.5
MS.gene049221.t1 MTR_8g080860 38.406 138 85 0 29 166 130 267 1.03e-20 93.2
MS.gene049221.t1 MTR_8g080860 33.918 171 113 0 30 200 85 255 2.77e-20 92.0
MS.gene049221.t1 MTR_6g043150 38.547 179 110 0 22 200 2 180 1.89e-30 122
MS.gene049221.t1 MTR_6g043150 35.749 207 123 3 16 222 67 263 1.68e-28 117
MS.gene049221.t1 MTR_6g043150 36.842 171 108 0 30 200 148 318 1.19e-23 102
MS.gene049221.t1 MTR_4g107460 40.782 179 105 1 26 203 5 183 3.82e-29 119
MS.gene049221.t1 MTR_4g107460 38.012 171 106 0 30 200 56 226 5.63e-29 119
MS.gene049221.t1 MTR_8g007500 35.052 194 123 1 12 202 176 369 4.56e-28 118
MS.gene049221.t1 MTR_8g007500 36.719 128 81 0 32 159 245 372 9.88e-18 87.0
MS.gene049221.t1 MTR_8g007500 34.906 106 69 0 32 137 268 373 1.10e-13 74.3
MS.gene049221.t1 MTR_8g092090 39.264 163 99 0 37 199 47 209 8.62e-28 112
MS.gene049221.t1 MTR_8g092090 33.149 181 106 1 30 210 9 174 3.46e-21 94.0
MS.gene049221.t1 MTR_8g092090 36.054 147 94 0 30 176 86 232 1.17e-18 86.3
MS.gene049221.t1 MTR_5g010840 33.846 195 114 1 21 200 103 297 9.88e-28 116
MS.gene049221.t1 MTR_5g010840 33.526 173 107 1 31 203 182 346 3.04e-24 105
MS.gene049221.t1 MTR_5g010840 39.394 99 60 0 31 129 266 364 3.68e-15 78.6
MS.gene049221.t1 MTR_7g451440 33.684 190 126 0 13 202 175 364 1.31e-27 117
MS.gene049221.t1 MTR_7g451440 38.281 128 79 0 32 159 240 367 3.71e-18 88.2
MS.gene049221.t1 MTR_7g451440 36.220 127 81 0 77 203 193 319 3.96e-16 82.0
MS.gene049221.t1 MTR_7g451440 34.579 107 70 0 31 137 262 368 7.54e-13 71.6
MS.gene049221.t1 MTR_2g078470 36.257 171 109 0 30 200 79 249 3.85e-27 114
MS.gene049221.t1 MTR_2g078470 40.571 175 104 0 26 200 6 180 2.17e-26 112
MS.gene049221.t1 MTR_2g078470 34.054 185 120 1 16 200 136 318 6.44e-25 107
MS.gene049221.t1 MTR_2g078470 38.621 145 89 0 29 173 216 360 1.41e-21 97.8
MS.gene049221.t1 MTR_2g078470 33.728 169 112 0 31 199 195 363 5.28e-20 92.8
MS.gene049221.t1 MTR_4g099180 36.047 172 110 0 31 202 173 344 3.88e-27 115
MS.gene049221.t1 MTR_4g099180 35.938 128 82 0 32 159 220 347 8.48e-15 77.4
MS.gene049221.t1 MTR_4g099180 34.109 129 85 0 75 203 171 299 2.38e-14 76.3
MS.gene049221.t1 MTR_8g080340 40.426 141 83 1 26 166 16 155 5.74e-27 108
MS.gene049221.t1 MTR_8g080340 38.614 101 62 0 103 203 23 123 5.39e-15 73.9
MS.gene049221.t1 MTR_8g095240 35.000 200 97 1 34 200 8 207 6.40e-27 114
MS.gene049221.t1 MTR_8g095240 33.516 182 110 2 29 199 118 299 1.02e-17 86.7
MS.gene049221.t1 MTR_8g095240 32.500 160 107 1 32 190 177 336 2.72e-12 69.7
MS.gene049221.t1 MTR_8g095240 34.058 138 68 1 30 167 222 336 8.21e-11 65.1
MS.gene049221.t1 MTR_5g058920 36.471 170 108 0 31 200 198 367 2.07e-25 110
MS.gene049221.t1 MTR_5g058920 39.062 128 78 0 32 159 245 372 3.46e-17 85.1
MS.gene049221.t1 MTR_3g072650 31.771 192 123 1 17 200 164 355 1.41e-23 103
MS.gene049221.t1 MTR_3g072650 36.719 128 81 0 32 159 233 360 5.70e-16 80.9
MS.gene049221.t1 MTR_3g072650 32.558 129 87 0 75 203 184 312 1.33e-13 73.6
MS.gene049221.t1 MTR_3g072650 31.771 192 123 1 17 200 164 355 1.93e-23 103
MS.gene049221.t1 MTR_3g072650 36.719 128 81 0 32 159 233 360 6.10e-16 81.3
MS.gene049221.t1 MTR_3g072650 32.558 129 87 0 75 203 184 312 1.52e-13 73.6
MS.gene049221.t1 MTR_8g080310 36.242 149 95 0 52 200 9 157 5.13e-18 82.0
MS.gene049221.t1 MTR_8g080310 37.121 132 83 0 69 200 3 134 5.33e-18 82.0
MS.gene049221.t1 MTR_8g080310 34.028 144 95 0 34 177 14 157 6.99e-14 70.1
MS.gene049221.t1 MTR_8g080350 29.302 215 114 3 29 205 125 339 7.61e-18 86.7
MS.gene049221.t1 MTR_8g080350 27.136 199 144 1 30 227 103 301 8.64e-18 86.7
MS.gene049221.t1 MTR_8g080350 32.919 161 96 3 30 188 195 345 7.74e-16 80.5
MS.gene049221.t1 MTR_8g080350 31.967 122 81 1 81 202 87 206 7.65e-11 65.1
MS.gene049221.t1 MTR_3g023310 36.000 125 67 1 45 169 11 122 9.77e-14 70.5
MS.gene049221.t1 MTR_3g023310 34.426 122 67 1 69 190 12 120 1.19e-11 64.3
MS.gene049221.t1 MTR_3g023310 36.735 98 52 1 113 200 10 107 1.40e-11 63.9
MS.gene049221.t1 MTR_4g099180 35.043 117 76 0 75 191 171 287 5.30e-13 70.9
MS.gene049221.t1 MTR_4g099180 33.913 115 76 0 31 145 173 287 1.07e-12 70.1
MS.gene049221.t1 MTR_4g099180 33.071 127 85 0 51 177 170 296 1.50e-12 69.7
MS.gene049221.t1 MTR_1g112280 29.444 180 102 3 3 181 586 741 6.13e-13 72.8
MS.gene049221.t1 MTR_4g099180 35.043 117 76 0 75 191 171 287 1.10e-12 70.1
MS.gene049221.t1 MTR_4g099180 33.621 116 77 0 31 146 173 288 2.88e-12 68.9
MS.gene049221.t1 MTR_4g099180 35.398 113 73 0 51 163 170 282 6.01e-12 67.8
MS.gene049221.t1 MTR_8g092410 36.207 116 69 3 89 200 146 260 3.23e-12 69.3
MS.gene049221.t1 MTR_8g092410 31.757 148 96 3 57 199 135 282 4.41e-11 65.9
MS.gene049221.t1 MTR_4g085090 29.518 166 97 6 393 543 1495 1655 4.40e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049221.t1 AT1G21980 65.508 719 200 10 3 683 43 751 0.0 943
MS.gene049221.t1 AT1G77740 66.667 705 186 8 17 683 60 753 0.0 940
MS.gene049221.t1 AT1G77740 66.667 705 186 8 17 683 60 753 0.0 940
MS.gene049221.t1 AT2G26420 61.856 679 219 7 25 684 48 705 0.0 840
MS.gene049221.t1 AT2G26420 61.224 686 226 7 25 684 48 719 0.0 838
MS.gene049221.t1 AT2G26420 61.224 686 226 7 25 684 48 719 0.0 838
MS.gene049221.t1 AT3G07960 52.699 704 277 11 25 683 22 714 0.0 712
MS.gene049221.t1 AT2G41210 48.704 733 276 13 25 683 65 771 0.0 675
MS.gene049221.t1 AT3G56960 49.248 731 280 17 25 683 67 778 0.0 664
MS.gene049221.t1 AT3G56960 49.248 731 280 17 25 683 67 778 0.0 664
MS.gene049221.t1 AT3G07960 52.115 591 241 8 25 577 22 608 0.0 596
MS.gene049221.t1 AT3G07960 54.011 561 220 7 25 547 22 582 0.0 595
MS.gene049221.t1 AT3G07960 54.011 561 220 7 25 547 22 582 0.0 595
MS.gene049221.t1 AT3G09920 41.441 777 317 18 29 683 52 812 0.0 535
MS.gene049221.t1 AT3G09920 41.441 777 317 18 29 683 52 812 0.0 535
MS.gene049221.t1 AT3G09920 41.441 777 317 18 29 683 52 812 0.0 535
MS.gene049221.t1 AT3G09920 41.441 777 317 18 29 683 52 812 0.0 535
MS.gene049221.t1 AT1G10900 40.862 766 328 17 26 684 7 754 1.77e-180 532
MS.gene049221.t1 AT1G10900 40.476 84 50 0 117 200 6 89 4.57e-11 66.6
MS.gene049221.t1 AT1G10900 40.862 766 328 17 26 684 7 754 1.77e-180 532
MS.gene049221.t1 AT1G10900 40.476 84 50 0 117 200 6 89 4.57e-11 66.6
MS.gene049221.t1 AT1G10900 40.862 766 328 17 26 684 7 754 1.77e-180 532
MS.gene049221.t1 AT1G10900 40.476 84 50 0 117 200 6 89 4.57e-11 66.6
MS.gene049221.t1 AT1G60890 47.248 436 174 6 293 682 342 767 1.34e-126 394
MS.gene049221.t1 AT1G60890 48.454 194 100 0 24 217 5 198 2.51e-54 199
MS.gene049221.t1 AT1G60890 47.248 436 174 6 293 682 354 779 1.78e-126 394
MS.gene049221.t1 AT1G60890 48.485 198 102 0 20 217 13 210 5.80e-55 201
MS.gene049221.t1 AT4G01190 38.596 399 174 10 335 681 12 391 1.29e-78 256
MS.gene049221.t1 AT4G01190 38.596 399 174 10 335 681 22 401 1.99e-78 256
MS.gene049221.t1 AT4G01190 38.596 399 174 10 335 681 22 401 1.99e-78 256
MS.gene049221.t1 AT1G01460 45.614 228 121 2 319 546 4 228 3.62e-62 214
MS.gene049221.t1 AT1G01460 48.454 97 44 2 589 684 332 423 8.76e-18 87.0
MS.gene049221.t1 AT1G77660 33.511 188 124 1 13 200 162 348 1.08e-26 114
MS.gene049221.t1 AT1G77660 35.659 129 83 0 32 160 226 354 4.99e-15 78.2
MS.gene049221.t1 AT1G77660 33.333 129 86 0 75 203 177 305 1.89e-14 76.6
MS.gene049221.t1 AT4G17080 34.118 170 112 0 31 200 258 427 3.94e-26 113
MS.gene049221.t1 AT4G17080 36.719 128 81 0 32 159 305 432 3.83e-18 88.6
MS.gene049221.t1 AT4G17080 32.738 168 107 2 36 203 223 384 3.36e-16 82.4
MS.gene049221.t1 AT1G21920 35.882 170 109 0 31 200 175 344 5.14e-26 111
MS.gene049221.t1 AT1G21920 37.209 129 81 0 32 160 222 350 1.20e-15 80.1
MS.gene049221.t1 AT1G21920 34.109 129 85 0 75 203 173 301 3.44e-12 69.3
MS.gene049221.t1 AT1G21920 35.882 170 109 0 31 200 175 344 5.37e-26 110
MS.gene049221.t1 AT1G21920 37.209 129 81 0 32 160 222 350 1.41e-15 79.3
MS.gene049221.t1 AT1G21920 34.109 129 85 0 75 203 173 301 4.01e-12 68.9
MS.gene049221.t1 AT2G35170 32.821 195 128 2 6 200 205 396 3.43e-25 110
MS.gene049221.t1 AT2G35170 36.719 128 81 0 32 159 274 401 1.46e-18 89.7
MS.gene049221.t1 AT2G35170 34.146 123 81 0 81 203 231 353 2.52e-14 76.6
MS.gene049221.t1 AT1G75010 29.375 160 88 3 23 181 595 730 5.58e-12 69.7
MS.gene049221.t1 AT1G71010 29.518 166 97 7 393 543 1417 1577 7.96e-11 66.2

Find 203 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATCTTCAATTGGGTATT+AGG 0.146414 3.3:-80504737 MS.gene049221:intron
TCTGATGTAATCCTTTATTT+TGG 0.181773 3.3:-80502120 MS.gene049221:CDS
CTTGGTTTCAAGAGCTAAAA+TGG 0.216088 3.3:-80503618 MS.gene049221:intron
CCATTATTCCCTCTGCTTCC+AGG 0.244314 3.3:+80503479 None:intergenic
TATGAAATCCCTAAACCTTT+TGG 0.258022 3.3:+80501987 None:intergenic
AGAAACATGTTGATAGTAAC+TGG 0.261885 3.3:+80503978 None:intergenic
TTGATCCAAAGGAGAAATTC+TGG 0.268700 3.3:-80504558 MS.gene049221:CDS
GCTATATTCCAAAAGGTTTA+GGG 0.268928 3.3:-80501995 MS.gene049221:CDS
AGCTATATTCCAAAAGGTTT+AGG 0.285097 3.3:-80501996 MS.gene049221:CDS
GGTGTTGGTGTTGGTGATGT+AGG 0.285814 3.3:-80504861 MS.gene049221:CDS
GGAGTGTTTCATCAGGGAAT+TGG 0.303949 3.3:-80505061 MS.gene049221:CDS
GTGATACTTATAAAGGTTCT+TGG 0.319831 3.3:-80505337 MS.gene049221:CDS
CTTGTCCAGAATTTCTCCTT+TGG 0.321711 3.3:+80504553 None:intergenic
CACACTCTCTCCGCTCTTGC+TGG 0.322769 3.3:+80502213 None:intergenic
GAGTGTTTCATCAGGGAATT+GGG 0.334465 3.3:-80505060 MS.gene049221:CDS
CAGACCCGATTTATTGTAAT+GGG 0.335217 3.3:-80503793 MS.gene049221:CDS
ACTACTGTCCCGTGGTGTTC+AGG 0.341724 3.3:-80504468 MS.gene049221:intron
GGCGTAAACTTGGAACCTTC+TGG 0.344560 3.3:+80504523 None:intergenic
CATTGCCCATTACAATAAAT+CGG 0.346280 3.3:+80503788 None:intergenic
ACTCACAGAAACCCTCTTCT+TGG 0.347045 3.3:+80505028 None:intergenic
AATATCCTTACGGAGTTTAT+CGG 0.347395 3.3:+80503699 None:intergenic
TTTGATTCTTAATCTTCAAT+TGG 0.355941 3.3:-80504745 MS.gene049221:CDS
TCAGGGTCCATGGAAGGTTC+TGG 0.355954 3.3:-80505380 MS.gene049221:CDS
GTTCATTGTGTCAAACCTAT+TGG 0.370452 3.3:-80503919 MS.gene049221:CDS
TGTCAATGATGCCAAAATAA+AGG 0.379878 3.3:+80502109 None:intergenic
TACCTTTCTTCCATTCTCCT+TGG 0.380033 3.3:+80505465 None:intergenic
TCACCTAATGAATTGTGTTC+TGG 0.380345 3.3:-80503394 MS.gene049221:intron
CCTTTCGCCTGGAGCAGTCT+TGG 0.384297 3.3:-80503636 MS.gene049221:CDS
CTCGTTGGTTACGAAATTCC+TGG 0.384416 3.3:-80503944 MS.gene049221:CDS
ACCGGGTTATACTGTTTGTA+AGG 0.392688 3.3:-80504784 MS.gene049221:CDS
CCTGGAAGCAGAGGGAATAA+TGG 0.393133 3.3:-80503479 MS.gene049221:CDS
GTAAACACACCTTTCCCTTT+CGG 0.395044 3.3:+80505095 None:intergenic
GGAGGTATATGTGGAGGAAT+GGG 0.400881 3.3:-80505220 MS.gene049221:CDS
GTATACAGTGGAAGTTTATC+AGG 0.401485 3.3:-80505539 MS.gene049221:CDS
CTTGACTTCAGACTTCTTCA+AGG 0.404538 3.3:+80504185 None:intergenic
GGCCATGTCAGGTGCTCATC+AGG 0.408142 3.3:-80504008 MS.gene049221:intron
ATTTGTATTTGGGAGCTTGA+TGG 0.412365 3.3:-80504969 MS.gene049221:CDS
CCACTGTATACGTCGCCGTT+TGG 0.415330 3.3:+80505551 None:intergenic
TTGATTCTTAATCTTCAATT+GGG 0.418290 3.3:-80504744 MS.gene049221:CDS
GGGAAATTCTCATGGCCATC+AGG 0.424679 3.3:-80505428 MS.gene049221:CDS
TATGTGGGTTGTTGGGAGAA+TGG 0.426025 3.3:-80505122 MS.gene049221:CDS
GTGTTGGTGTTGGTGATGTA+GGG 0.426176 3.3:-80504860 MS.gene049221:CDS
GATGGAAGTGAATCAGAGAT+TGG 0.430424 3.3:-80504885 MS.gene049221:CDS
ACAAATAGCAAGCATGTAAT+CGG 0.437021 3.3:+80504296 None:intergenic
TTTCATACACAGAATCTTTG+TGG 0.437698 3.3:-80501971 MS.gene049221:CDS
TGATACTTATAAAGGTTCTT+GGG 0.438562 3.3:-80505336 MS.gene049221:CDS
GGAATCGTTATGTGGGTTGT+TGG 0.438945 3.3:-80505130 MS.gene049221:CDS
ATACCAGAACACAATTCATT+AGG 0.439028 3.3:+80503391 None:intergenic
TTTGTATTTGGGAGCTTGAT+GGG 0.440443 3.3:-80504968 MS.gene049221:CDS
CGATGGGGATGTTAAGAAAC+CGG 0.442381 3.3:-80504802 MS.gene049221:CDS
ATCTAAAATCCACCGATTGA+TGG 0.444477 3.3:+80504497 None:intergenic
TGATAGAGACTGTGAGCTCC+TGG 0.444600 3.3:-80503497 MS.gene049221:CDS
TGCTAATGGTGATGTGTATG+AGG 0.445109 3.3:-80505276 MS.gene049221:CDS
GGATTGGATCAGCAGCAAAC+TGG 0.447072 3.3:-80502183 MS.gene049221:CDS
TTAATTCCCAGCCGGATTAG+AGG 0.447492 3.3:+80502240 None:intergenic
GTTGGGTATTTAGGCATTTG+AGG 0.449375 3.3:-80504341 MS.gene049221:intron
TTGGGTATTTAGGCATTTGA+GGG 0.449393 3.3:-80504340 MS.gene049221:intron
AAGGTTCTTGGGTTTCTGAT+AGG 0.451720 3.3:-80505325 MS.gene049221:CDS
CGTGATGGGAGTGTTTCATC+AGG 0.451975 3.3:-80505068 MS.gene049221:CDS
GTGGAAGGTGATACTTATAA+AGG 0.453599 3.3:-80505344 MS.gene049221:CDS
ACAGACCCGATTTATTGTAA+TGG 0.455479 3.3:-80503794 MS.gene049221:intron
TCTAAAATCCACCGATTGAT+GGG 0.456122 3.3:+80504498 None:intergenic
TCTGATAGGAAACATGGGTT+TGG 0.456876 3.3:-80505311 MS.gene049221:CDS
CTTGGGATCAACGGCTGAGA+TGG 0.457259 3.3:+80502017 None:intergenic
GATTACATGCTTGCTATTTG+TGG 0.457685 3.3:-80504294 MS.gene049221:CDS
ATGGGGAAGGGAGGTATATG+TGG 0.461629 3.3:-80505229 MS.gene049221:CDS
ATACCAGAGGACCTCTAATC+CGG 0.461846 3.3:-80502251 MS.gene049221:intron
TGGGAGCTTGATGGGGAAGC+TGG 0.464916 3.3:-80504960 MS.gene049221:CDS
ATCCCAAGCTATATTCCAAA+AGG 0.465411 3.3:-80502002 MS.gene049221:CDS
GTCCTTGTTATTCGATCGAT+GGG 0.468826 3.3:-80504818 MS.gene049221:CDS
GCGGAGAGAGTGTGTAAAGC+TGG 0.469147 3.3:-80502204 MS.gene049221:CDS
GAAGAGTGCATACCGGCCTA+TGG 0.469968 3.3:+80503226 None:intergenic
GCCGTGTTCGCGGTGGTCGA+CGG 0.472053 3.3:+80505606 None:intergenic
GGTGAGAAATGTTATGCTAA+TGG 0.475438 3.3:-80505290 MS.gene049221:CDS
TTGAGGGAAATGTCTTCTCC+TGG 0.476508 3.3:-80504261 MS.gene049221:CDS
GAATCGTTATGTGGGTTGTT+GGG 0.476688 3.3:-80505129 MS.gene049221:CDS
GAGATTGGTGGTGTTGGTGT+TGG 0.478650 3.3:-80504870 MS.gene049221:CDS
CAAATCGGTCATCTTGAGTA+AGG 0.481065 3.3:+80504217 None:intergenic
GGGAGGTATATGTGGAGGAA+TGG 0.483176 3.3:-80505221 MS.gene049221:CDS
GGAGGTACAATTTGCAAGAT+GGG 0.484245 3.3:-80505247 MS.gene049221:CDS
GTTTCTGTGAGTGTGGATGA+TGG 0.484895 3.3:-80505017 MS.gene049221:CDS
CAAACCTATTGGAGGCCAAA+AGG 0.485887 3.3:-80503908 MS.gene049221:intron
GGTGACACGCGCCGTGTTCG+CGG 0.487367 3.3:+80505596 None:intergenic
CTTGAAACCAAGACTGCTCC+AGG 0.487985 3.3:+80503629 None:intergenic
GAAGAATGGGAATCGTTATG+TGG 0.493445 3.3:-80505138 MS.gene049221:CDS
TTGATGGGGAGGCGTAAACT+TGG 0.495578 3.3:+80504513 None:intergenic
GGAATATAGCTTGGGATCAA+CGG 0.495725 3.3:+80502008 None:intergenic
GAGAGTGTGTAAAGCTGGAT+TGG 0.495931 3.3:-80502199 MS.gene049221:CDS
GACCATGAGATGAACCTTTG+AGG 0.496961 3.3:+80503728 None:intergenic
CAGAGGACCTCTAATCCGGC+TGG 0.499620 3.3:-80502247 MS.gene049221:CDS
TGGAGGTACAATTTGCAAGA+TGG 0.499639 3.3:-80505248 MS.gene049221:CDS
TCAACGGCTGAGATGGATGT+GGG 0.500864 3.3:+80502024 None:intergenic
GTGATGTGTATGAGGGTTGG+TGG 0.503545 3.3:-80505268 MS.gene049221:CDS
TGTATACGTCGCCGTTTGGA+AGG 0.506660 3.3:+80505555 None:intergenic
ATGTGTATGAGGGTTGGTGG+AGG 0.506922 3.3:-80505265 MS.gene049221:CDS
TTGTGTTGGGAAGCATGCTT+CGG 0.507813 3.3:-80504608 MS.gene049221:CDS
TACAATTTGCAAGATGGGGA+AGG 0.509651 3.3:-80505242 MS.gene049221:CDS
TAGTCTCATCAATATCCTTA+CGG 0.513121 3.3:+80503689 None:intergenic
GACCTCAAAGGTTCATCTCA+TGG 0.520619 3.3:-80503730 MS.gene049221:CDS
CATAAGCGATTTGACCTCAA+AGG 0.521058 3.3:-80503742 MS.gene049221:CDS
TGGGTTTCTGATAGGAAACA+TGG 0.521152 3.3:-80505317 MS.gene049221:CDS
TGTGGTGCTATATGTGGTAA+TGG 0.522855 3.3:-80505173 MS.gene049221:CDS
GTGCCTCGAGAGCTTAGATC+AGG 0.523004 3.3:-80504586 MS.gene049221:CDS
CAAAGGAGAAATTCTGGACA+AGG 0.526565 3.3:-80504552 MS.gene049221:CDS
ATCAACGGCTGAGATGGATG+TGG 0.528438 3.3:+80502023 None:intergenic
AGTAATCATCACGAAAATGA+AGG 0.531530 3.3:+80503437 None:intergenic
TACCAAGGAGAATGGAAGAA+AGG 0.532077 3.3:-80505467 MS.gene049221:CDS
AAAAGTTCCAGAACCTTCCA+TGG 0.533472 3.3:+80505373 None:intergenic
GGTGTTGGTGATGTAGGGTA+TGG 0.535016 3.3:-80504855 MS.gene049221:CDS
GATGCATGTACCAAGGAGAA+TGG 0.535617 3.3:-80505475 MS.gene049221:CDS
TTGTGGCAATGATACATTGA+GGG 0.539553 3.3:-80504277 MS.gene049221:CDS
AGTCCTTGTTATTCGATCGA+TGG 0.540552 3.3:-80504819 MS.gene049221:CDS
TTGTGATATTGTTGATAATG+TGG 0.540603 3.3:-80504928 MS.gene049221:CDS
TGCATACAAGTCACTACAAG+TGG 0.541017 3.3:-80502049 MS.gene049221:CDS
TATTTCCACCTGAACACCAC+GGG 0.543557 3.3:+80504460 None:intergenic
GTGTGTTTACGTGGCGTGAT+GGG 0.545765 3.3:-80505082 MS.gene049221:CDS
CCATCAGGAGCTACTTATGA+AGG 0.545903 3.3:-80505413 MS.gene049221:CDS
GAAAGGCAAAACTAAGATCA+AGG 0.546651 3.3:+80503653 None:intergenic
GCCGTCGACCACCGCGAACA+CGG 0.548092 3.3:-80505607 MS.gene049221:CDS
GTTCGCGGTGGTCGACGGCA+TGG 0.548954 3.3:+80505611 None:intergenic
ATGGTGATGTGTATGAGGGT+TGG 0.549055 3.3:-80505271 MS.gene049221:CDS
TGGACAAGGTTTCCTCCAGA+AGG 0.550122 3.3:-80504538 MS.gene049221:CDS
CTTGAAGAAGTCTGAAGTCA+AGG 0.551924 3.3:-80504184 MS.gene049221:intron
GGAATGAGTATGTTGGTGAA+TGG 0.558164 3.3:-80505199 MS.gene049221:CDS
ATTGCCCATTACAATAAATC+GGG 0.558443 3.3:+80503789 None:intergenic
AGCTCCCAAATACAAATCCT+AGG 0.558462 3.3:+80504975 None:intergenic
AATGGAAGAAAGGTAAAGCA+TGG 0.560447 3.3:-80505457 MS.gene049221:CDS
CCAAGACTGCTCCAGGCGAA+AGG 0.561092 3.3:+80503636 None:intergenic
ATAGCAAGCATGTAATCGGC+AGG 0.561196 3.3:+80504300 None:intergenic
TTTATTTCAGGGTCCATGGA+AGG 0.561312 3.3:-80505386 MS.gene049221:CDS
CTGGCATGTTAATTCCCAGC+CGG 0.561746 3.3:+80502232 None:intergenic
ACGGCAAAGGTAAATACGTA+TGG 0.563043 3.3:-80505505 MS.gene049221:CDS
CTGTGAGCTCCTGGAAGCAG+AGG 0.563490 3.3:-80503488 MS.gene049221:CDS
ATCTCACCGCTACTCTCTGA+AGG 0.563905 3.3:+80502144 None:intergenic
TTGTATTTGGGAGCTTGATG+GGG 0.567064 3.3:-80504967 MS.gene049221:CDS
GTTTACGCCTCCCCATCAAT+CGG 0.568425 3.3:-80504509 MS.gene049221:CDS
GGTGTGTTTACGTGGCGTGA+TGG 0.569414 3.3:-80505083 MS.gene049221:CDS
TCGTTGGTTACGAAATTCCT+GGG 0.571328 3.3:-80503943 MS.gene049221:CDS
GGGAGAATGGTGTGCCGAAA+GGG 0.571892 3.3:-80505109 MS.gene049221:CDS
AAGAGTGCATACCGGCCTAT+GGG 0.572174 3.3:+80503227 None:intergenic
CCCTTACAAACAGTATAACC+CGG 0.573249 3.3:+80504783 None:intergenic
ATGACACTCAGGACACGAGA+TGG 0.576124 3.3:-80503253 MS.gene049221:CDS
AATGGTGTGCCGAAAGGGAA+AGG 0.577935 3.3:-80505104 MS.gene049221:CDS
CATTGTGTCAAACCTATTGG+AGG 0.578059 3.3:-80503916 MS.gene049221:CDS
ACAATTTGCAAGATGGGGAA+GGG 0.579043 3.3:-80505241 MS.gene049221:CDS
GGGGAATGATGCCAAGAAGA+GGG 0.579761 3.3:-80505039 MS.gene049221:CDS
ATGGAAGAAAGGTAAAGCAT+GGG 0.583487 3.3:-80505456 MS.gene049221:CDS
GGATGATGGTTCTAAGAGTG+TGG 0.588270 3.3:-80505003 MS.gene049221:CDS
AATTAACATGCCAGCAAGAG+CGG 0.589839 3.3:-80502223 MS.gene049221:CDS
GGTAAATACGTATGGAACGA+TGG 0.590153 3.3:-80505497 MS.gene049221:CDS
GACAACCGATAAACTCCGTA+AGG 0.596237 3.3:-80503704 MS.gene049221:CDS
CCGGGTTATACTGTTTGTAA+GGG 0.599766 3.3:-80504783 MS.gene049221:CDS
AGAGGACCTCTAATCCGGCT+GGG 0.601886 3.3:-80502246 MS.gene049221:CDS
GAATCAGAGATTGGTGGTGT+TGG 0.602478 3.3:-80504876 MS.gene049221:CDS
TGTGAGCTCCTGGAAGCAGA+GGG 0.607911 3.3:-80503487 MS.gene049221:CDS
TTCTCAGTACAAGAACTCGT+TGG 0.608088 3.3:-80503959 MS.gene049221:CDS
CGAGATGGATACCCATAGGC+CGG 0.610897 3.3:-80503238 MS.gene049221:intron
AGTGTTTCATCAGGGAATTG+GGG 0.612643 3.3:-80505059 MS.gene049221:CDS
TGGAAGAAAGGTAAAGCATG+GGG 0.615750 3.3:-80505455 MS.gene049221:CDS
AAATCCACCGATTGATGGGG+AGG 0.615911 3.3:+80504502 None:intergenic
GCTAATGGTGATGTGTATGA+GGG 0.617886 3.3:-80505275 MS.gene049221:CDS
TGGAAATGTGGTGCTATATG+TGG 0.618355 3.3:-80505179 MS.gene049221:CDS
TCTCACCGCTACTCTCTGAA+GGG 0.618386 3.3:+80502145 None:intergenic
GGGTTTCTGATAGGAAACAT+GGG 0.619609 3.3:-80505316 MS.gene049221:CDS
CCTTCATAAGTAGCTCCTGA+TGG 0.620490 3.3:+80505413 None:intergenic
AAGGGAAAGGTGTGTTTACG+TGG 0.620553 3.3:-80505091 MS.gene049221:CDS
GGGAAGGGAGGTATATGTGG+AGG 0.626837 3.3:-80505226 MS.gene049221:CDS
TCAAAGGTTCATCTCATGGT+CGG 0.627326 3.3:-80503726 MS.gene049221:CDS
TCTCCTGATCTAAGCTCTCG+AGG 0.629245 3.3:+80504583 None:intergenic
GAAGAGGGTTTCTGTGAGTG+TGG 0.631349 3.3:-80505024 MS.gene049221:CDS
ACGTATTTACCTTTGCCGTG+TGG 0.632527 3.3:+80505509 None:intergenic
TGGGAGAATGGTGTGCCGAA+AGG 0.634731 3.3:-80505110 MS.gene049221:CDS
GTGTTTCATCAGGGAATTGG+GGG 0.636387 3.3:-80505058 MS.gene049221:CDS
AAGAATGGGAATCGTTATGT+GGG 0.637878 3.3:-80505137 MS.gene049221:CDS
GACACGAGATGGATACCCAT+AGG 0.639932 3.3:-80503242 MS.gene049221:CDS
TTTGTGGCAATGATACATTG+AGG 0.640401 3.3:-80504278 MS.gene049221:CDS
GTTTGACACAATGAACTCCC+AGG 0.642986 3.3:+80503926 None:intergenic
AGGAATGGGAATGAGTATGT+TGG 0.643494 3.3:-80505206 MS.gene049221:CDS
TACGCCTCCCCATCAATCGG+TGG 0.646074 3.3:-80504506 MS.gene049221:CDS
ATTTGCAAGATGGGGAAGGG+AGG 0.653215 3.3:-80505238 MS.gene049221:CDS
TATGTTGGTGAATGGAAATG+TGG 0.655881 3.3:-80505191 MS.gene049221:CDS
CATACACAGAATCTTTGTGG+AGG 0.658046 3.3:-80501968 MS.gene049221:CDS
CCAAACGGCGACGTATACAG+TGG 0.660988 3.3:-80505551 MS.gene049221:CDS
CTAAAATCCACCGATTGATG+GGG 0.661133 3.3:+80504499 None:intergenic
GATGGGGATGTTAAGAAACC+GGG 0.661758 3.3:-80504801 MS.gene049221:CDS
CATGCAAAATGATGACACTC+AGG 0.664084 3.3:-80503264 MS.gene049221:CDS
GGAAACACACCACACGGCAA+AGG 0.664480 3.3:-80505518 MS.gene049221:CDS
GACACGCGCCGTGTTCGCGG+TGG 0.667971 3.3:+80505599 None:intergenic
GTAAACTTGGAACCTTCTGG+AGG 0.668383 3.3:+80504526 None:intergenic
TTATTTCCACCTGAACACCA+CGG 0.668462 3.3:+80504459 None:intergenic
TTATCAGGAAACACACCACA+CGG 0.669927 3.3:-80505524 MS.gene049221:CDS
GAAACATGTTGATAGTAACT+GGG 0.673484 3.3:+80503979 None:intergenic
GAGGTACAATTTGCAAGATG+GGG 0.673630 3.3:-80505246 MS.gene049221:CDS
GTGATGGGAGTGTTTCATCA+GGG 0.673719 3.3:-80505067 MS.gene049221:CDS
AACGATGGATGCATGTACCA+AGG 0.678792 3.3:-80505482 MS.gene049221:CDS
GGAAGAAAGGTAAAGCATGG+GGG 0.686830 3.3:-80505454 MS.gene049221:CDS
CTCACCGCTACTCTCTGAAG+GGG 0.694466 3.3:+80502146 None:intergenic
ATGGAAAGACTACTGTCCCG+TGG 0.696500 3.3:-80504476 MS.gene049221:CDS
CAACGGCTGAGATGGATGTG+GGG 0.698303 3.3:+80502025 None:intergenic
TCTACCCCTTCAGAGAGTAG+CGG 0.711188 3.3:-80502150 MS.gene049221:CDS
GGAAGTGAATCAGAGATTGG+TGG 0.714127 3.3:-80504882 MS.gene049221:CDS
TCCCCATCGATCGAATAACA+AGG 0.724583 3.3:+80504816 None:intergenic
TCCTTGTTATTCGATCGATG+GGG 0.734954 3.3:-80504817 MS.gene049221:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTTATAATTTCACA+AGG + chr3.3:80504449-80504468 None:intergenic 10.0%
!! AAAAAAACTTACTATAACAT+TGG + chr3.3:80505011-80505030 None:intergenic 15.0%
!! TAAAATGTAGCAATAAAAAA+TGG + chr3.3:80504656-80504675 None:intergenic 15.0%
!! TATGAAAAGATTATTCATTT+AGG - chr3.3:80504674-80504693 MS.gene049221:intron 15.0%
!!! TATTAATGATGTTTGTATTT+TGG - chr3.3:80503213-80503232 MS.gene049221:intron 15.0%
!! AGAACAAATCAATAAATGAT+GGG + chr3.3:80504588-80504607 None:intergenic 20.0%
!! TAGAACAAATCAATAAATGA+TGG + chr3.3:80504589-80504608 None:intergenic 20.0%
!! TATTAAATATCTGCATAGTT+AGG + chr3.3:80505302-80505321 None:intergenic 20.0%
!! TCAAGTCTAGTAATTAATTA+AGG + chr3.3:80503458-80503477 None:intergenic 20.0%
!! TGTCAATATTTATATGTAAC+TGG + chr3.3:80505160-80505179 None:intergenic 20.0%
!! TTGATTCTTAATCTTCAATT+GGG - chr3.3:80502854-80502873 MS.gene049221:intron 20.0%
!! TTTGATTCTTAATCTTCAAT+TGG - chr3.3:80502853-80502872 MS.gene049221:intron 20.0%
!!! TTGGTTTATTTTTATGTGTT+TGG - chr3.3:80502927-80502946 MS.gene049221:intron 20.0%
!!! TTTGTTTTAGATATTGTGTT+GGG - chr3.3:80502977-80502996 MS.gene049221:intron 20.0%
!!! TTTTGCTAATATCATAATCT+TGG + chr3.3:80505519-80505538 None:intergenic 20.0%
!!! TTTTGTTTTAGATATTGTGT+TGG - chr3.3:80502976-80502995 MS.gene049221:intron 20.0%
! AATGAATACTTGTATTGCTA+TGG - chr3.3:80503777-80503796 MS.gene049221:CDS 25.0%
! ACAACAAAAACAATCAGATA+CGG + chr3.3:80504407-80504426 None:intergenic 25.0%
! GACTAAATATGGAAAATTCA+AGG + chr3.3:80504488-80504507 None:intergenic 25.0%
! TAAAAGTAAAAGAAATGACC+CGG + chr3.3:80504732-80504751 None:intergenic 25.0%
! TAGAAATCAAAGTCACTTAT+GGG - chr3.3:80504607-80504626 MS.gene049221:CDS 25.0%
! TATAAAACCTATATTGAGCA+AGG - chr3.3:80503504-80503523 MS.gene049221:CDS 25.0%
! TCTAGTAATTAATTAAGGCT+AGG + chr3.3:80503453-80503472 None:intergenic 25.0%
! TGATACTTATAAAGGTTCTT+GGG - chr3.3:80502262-80502281 MS.gene049221:intron 25.0%
! TGTTATCTACATTGTTAGTT+TGG - chr3.3:80502896-80502915 MS.gene049221:intron 25.0%
! TTAAAAGATTTGTGGGATTA+TGG - chr3.3:80504292-80504311 MS.gene049221:CDS 25.0%
! TTAATCTTCAATTGGGTATT+AGG - chr3.3:80502861-80502880 MS.gene049221:intron 25.0%
! TTCAGTGCAAAATTTAAACT+AGG + chr3.3:80503725-80503744 None:intergenic 25.0%
!! TTTTATGATGTTCTTAGAGT+TGG - chr3.3:80504048-80504067 MS.gene049221:intron 25.0%
!! TTTTCCTAGGATTTGTATTT+GGG - chr3.3:80502619-80502638 MS.gene049221:intron 25.0%
!! TTTTGCTTCTATTTGCATTA+TGG + chr3.3:80504796-80504815 None:intergenic 25.0%
!! TTTTGTAATGATTTTTGCTC+AGG - chr3.3:80504073-80504092 MS.gene049221:intron 25.0%
!! TTTTTCCTAGGATTTGTATT+TGG - chr3.3:80502618-80502637 MS.gene049221:intron 25.0%
!!! AATGATGTTTGTATTTTGGT+GGG - chr3.3:80503217-80503236 MS.gene049221:intron 25.0%
!!! ATGAAGGTGATTTTATTTCA+GGG - chr3.3:80502201-80502220 MS.gene049221:CDS 25.0%
!!! GTGTTTTAATTTGGAAGAAT+GGG - chr3.3:80502447-80502466 MS.gene049221:intron 25.0%
!!! TAATGATGTTTGTATTTTGG+TGG - chr3.3:80503216-80503235 MS.gene049221:intron 25.0%
!!! TATGAAGGTGATTTTATTTC+AGG - chr3.3:80502200-80502219 MS.gene049221:CDS 25.0%
!!! TCAAGGTTTTGATTACAAAT+CGG + chr3.3:80503399-80503418 None:intergenic 25.0%
!!! TCTGATGTAATCCTTTATTT+TGG - chr3.3:80505478-80505497 MS.gene049221:CDS 25.0%
!!! TTGTGATATTGTTGATAATG+TGG - chr3.3:80502670-80502689 MS.gene049221:intron 25.0%
AATATCCTTACGGAGTTTAT+CGG + chr3.3:80503902-80503921 None:intergenic 30.0%
AATTCACATGAAAGGAAACA+TGG + chr3.3:80504257-80504276 None:intergenic 30.0%
AATTTCACCTTGCTCAATAT+AGG + chr3.3:80503514-80503533 None:intergenic 30.0%
ACAAATAGCAAGCATGTAAT+CGG + chr3.3:80503305-80503324 None:intergenic 30.0%
AGCTATATTCCAAAAGGTTT+AGG - chr3.3:80505602-80505621 MS.gene049221:CDS 30.0%
AGTAATCATCACGAAAATGA+AGG + chr3.3:80504164-80504183 None:intergenic 30.0%
AGTGAAAGAAACTTTACACA+AGG + chr3.3:80504020-80504039 None:intergenic 30.0%
ATACCAGAACACAATTCATT+AGG + chr3.3:80504210-80504229 None:intergenic 30.0%
ATCCTCAAAACTTATCTCTT+TGG + chr3.3:80504511-80504530 None:intergenic 30.0%
ATTGCCCATTACAATAAATC+GGG + chr3.3:80503812-80503831 None:intergenic 30.0%
CAATGATATTGATAGAGCAA+TGG - chr3.3:80505094-80505113 MS.gene049221:CDS 30.0%
CATTGCCCATTACAATAAAT+CGG + chr3.3:80503813-80503832 None:intergenic 30.0%
CTAGAAATCAAAGTCACTTA+TGG - chr3.3:80504606-80504625 MS.gene049221:CDS 30.0%
GCTATATTCCAAAAGGTTTA+GGG - chr3.3:80505603-80505622 MS.gene049221:CDS 30.0%
GTGATACTTATAAAGGTTCT+TGG - chr3.3:80502261-80502280 MS.gene049221:intron 30.0%
TAGTCTCATCAATATCCTTA+CGG + chr3.3:80503912-80503931 None:intergenic 30.0%
TATGATTCTTGATATACCAG+AGG - chr3.3:80505334-80505353 MS.gene049221:CDS 30.0%
TCCTCAAAACTTATCTCTTT+GGG + chr3.3:80504510-80504529 None:intergenic 30.0%
TGTCAATGATGCCAAAATAA+AGG + chr3.3:80505492-80505511 None:intergenic 30.0%
TGTTTCTTTGTTGGGTATTT+AGG - chr3.3:80503248-80503267 MS.gene049221:CDS 30.0%
TTTAGTAATCCGTTTCTCTT+GGG - chr3.3:80505251-80505270 MS.gene049221:CDS 30.0%
TTTCATACACAGAATCTTTG+TGG - chr3.3:80505627-80505646 MS.gene049221:CDS 30.0%
! AAATCTTTTAACCCTTGGAT+CGG + chr3.3:80504283-80504302 None:intergenic 30.0%
! AACAAATAGCTTTACAGAGA+AGG + chr3.3:80505068-80505087 None:intergenic 30.0%
! CTACATTGTTAGTTTGGATT+TGG - chr3.3:80502902-80502921 MS.gene049221:intron 30.0%
! GCTTGTATGTTTTATAGAGA+TGG - chr3.3:80502695-80502714 MS.gene049221:intron 30.0%
! TATGAAATCCCTAAACCTTT+TGG + chr3.3:80505614-80505633 None:intergenic 30.0%
! TATTTCTACATGACTAGTAG+TGG + chr3.3:80504882-80504901 None:intergenic 30.0%
! TGGCGTTTTTAATAAGATTG+TGG - chr3.3:80502947-80502966 MS.gene049221:intron 30.0%
! TGGTTGTTTGTTTCTTTGTT+GGG - chr3.3:80503240-80503259 MS.gene049221:CDS 30.0%
! TGTTAGTTTGGATTTGGATT+TGG - chr3.3:80502908-80502927 MS.gene049221:intron 30.0%
! TTTTAGTAATCCGTTTCTCT+TGG - chr3.3:80505250-80505269 MS.gene049221:CDS 30.0%
! TTTTCGTGATGATTACTCAT+CGG - chr3.3:80504167-80504186 MS.gene049221:intron 30.0%
!! AGAAACATGTTGATAGTAAC+TGG + chr3.3:80503623-80503642 None:intergenic 30.0%
!! CAAATCAATAAATGATGGGT+TGG + chr3.3:80504584-80504603 None:intergenic 30.0%
!! GAAACATGTTGATAGTAACT+GGG + chr3.3:80503622-80503641 None:intergenic 30.0%
!! TATCTCTTTGGGACTAAATA+TGG + chr3.3:80504499-80504518 None:intergenic 30.0%
!! TTTTGAGGATTTAGAAATGC+TGG - chr3.3:80504521-80504540 MS.gene049221:CDS 30.0%
!!! AAACCTTTTGGAATATAGCT+TGG + chr3.3:80505602-80505621 None:intergenic 30.0%
!!! AACCTTTTGGAATATAGCTT+GGG + chr3.3:80505601-80505620 None:intergenic 30.0%
!!! GGTGTTTTAATTTGGAAGAA+TGG - chr3.3:80502446-80502465 MS.gene049221:intron 30.0%
!!! GTGGTAATGGTGTTTTAATT+TGG - chr3.3:80502438-80502457 MS.gene049221:intron 30.0%
!!! GTTTTTTTGACAACAAATGC+TGG - chr3.3:80505023-80505042 MS.gene049221:CDS 30.0%
!!! TTGTTTTTGTTGTTTCAGCT+TGG - chr3.3:80504414-80504433 MS.gene049221:intron 30.0%
AAGAATGGGAATCGTTATGT+GGG - chr3.3:80502461-80502480 MS.gene049221:intron 35.0%
AATGGAAGAAAGGTAAAGCA+TGG - chr3.3:80502141-80502160 MS.gene049221:CDS 35.0%
ACAGACCCGATTTATTGTAA+TGG - chr3.3:80503804-80503823 MS.gene049221:intron 35.0%
ATCCCAAGCTATATTCCAAA+AGG - chr3.3:80505596-80505615 MS.gene049221:CDS 35.0%
ATCGGACAAATTCACATGAA+AGG + chr3.3:80504265-80504284 None:intergenic 35.0%
ATGAAAGGAAACATGGAACT+AGG + chr3.3:80504250-80504269 None:intergenic 35.0%
ATGGAAGAAAGGTAAAGCAT+GGG - chr3.3:80502142-80502161 MS.gene049221:CDS 35.0%
ATTTGTATTTGGGAGCTTGA+TGG - chr3.3:80502629-80502648 MS.gene049221:intron 35.0%
CACTTCTAAATCACAGATAG+AGG + chr3.3:80504937-80504956 None:intergenic 35.0%
CAGACCCGATTTATTGTAAT+GGG - chr3.3:80503805-80503824 MS.gene049221:intron 35.0%
CATGACAAATCAAGTCATTG+TGG + chr3.3:80504987-80505006 None:intergenic 35.0%
CCAACTAATCATTGAAACAG+AGG + chr3.3:80503569-80503588 None:intergenic 35.0%
CCAAGGGTTAAAAGATTTGT+GGG - chr3.3:80504285-80504304 MS.gene049221:CDS 35.0%
CCTCTGTTTCAATGATTAGT+TGG - chr3.3:80503566-80503585 MS.gene049221:intron 35.0%
CTTGGTTTCAAGAGCTAAAA+TGG - chr3.3:80503980-80503999 MS.gene049221:CDS 35.0%
GAAAGGCAAAACTAAGATCA+AGG + chr3.3:80503948-80503967 None:intergenic 35.0%
GGTGAGAAATGTTATGCTAA+TGG - chr3.3:80502308-80502327 MS.gene049221:intron 35.0%
GTAGAAAAACACCTTCCAAA+CGG - chr3.3:80502032-80502051 MS.gene049221:CDS 35.0%
GTATACAGTGGAAGTTTATC+AGG - chr3.3:80502059-80502078 MS.gene049221:CDS 35.0%
GTCATGTAGAAATAAAGCAG+TGG - chr3.3:80504888-80504907 MS.gene049221:CDS 35.0%
GTGGAAGGTGATACTTATAA+AGG - chr3.3:80502254-80502273 MS.gene049221:intron 35.0%
GTTCATTGTGTCAAACCTAT+TGG - chr3.3:80503679-80503698 MS.gene049221:CDS 35.0%
TAGACTAAAGCTCAAGAACA+TGG + chr3.3:80504763-80504782 None:intergenic 35.0%
TCACCTAATGAATTGTGTTC+TGG - chr3.3:80504204-80504223 MS.gene049221:CDS 35.0%
TCCAAGGGTTAAAAGATTTG+TGG - chr3.3:80504284-80504303 MS.gene049221:CDS 35.0%
TGATATTGATAGAGCAATGG+TGG - chr3.3:80505097-80505116 MS.gene049221:CDS 35.0%
TGCTTCTATTTGCATTATGG+CGG + chr3.3:80504793-80504812 None:intergenic 35.0%
TTATGGGAATGTGGATTCAT+GGG - chr3.3:80504623-80504642 MS.gene049221:intron 35.0%
TTGATCCAAAGGAGAAATTC+TGG - chr3.3:80503040-80503059 MS.gene049221:intron 35.0%
TTGGGTATTTAGGCATTTGA+GGG - chr3.3:80503258-80503277 MS.gene049221:CDS 35.0%
TTGTGGCAATGATACATTGA+GGG - chr3.3:80503321-80503340 MS.gene049221:intron 35.0%
TTTGTATTTGGGAGCTTGAT+GGG - chr3.3:80502630-80502649 MS.gene049221:intron 35.0%
TTTGTGGCAATGATACATTG+AGG - chr3.3:80503320-80503339 MS.gene049221:intron 35.0%
! ATAAAGTGAAGAGTGCATAC+CGG + chr3.3:80504382-80504401 None:intergenic 35.0%
! ATCTAAAATCCACCGATTGA+TGG + chr3.3:80503104-80503123 None:intergenic 35.0%
! CTGTTTCAATGATTAGTTGG+TGG - chr3.3:80503569-80503588 MS.gene049221:intron 35.0%
! GTGGTTGTTTGTTTCTTTGT+TGG - chr3.3:80503239-80503258 MS.gene049221:CDS 35.0%
! TATGTTGGTGAATGGAAATG+TGG - chr3.3:80502407-80502426 MS.gene049221:intron 35.0%
! TCCCAAAGAGATAAGTTTTG+AGG - chr3.3:80504506-80504525 MS.gene049221:CDS 35.0%
! TCTAAAATCCACCGATTGAT+GGG + chr3.3:80503103-80503122 None:intergenic 35.0%
! TTCTTGAGCTTTAGTCTATC+TGG - chr3.3:80504765-80504784 MS.gene049221:CDS 35.0%
!! AATGGGCAATGTGTTTTGTT+CGG - chr3.3:80503822-80503841 MS.gene049221:intron 35.0%
!! ATCAATCGGTGGATTTTAGA+TGG - chr3.3:80503103-80503122 MS.gene049221:intron 35.0%
!! ATCAGGAGATTTTGATCCAA+AGG - chr3.3:80503029-80503048 MS.gene049221:intron 35.0%
!! ATGGACTACAGTTTTCTCAT+TGG - chr3.3:80504138-80504157 MS.gene049221:intron 35.0%
!! CACAATGACTTGATTTGTCA+TGG - chr3.3:80504985-80505004 MS.gene049221:CDS 35.0%
!! GATTACATGCTTGCTATTTG+TGG - chr3.3:80503304-80503323 MS.gene049221:intron 35.0%
!! TGATTTTATTTCAGGGTCCA+TGG - chr3.3:80502208-80502227 MS.gene049221:CDS 35.0%
!!! TTTGGAAGGTGTTTTTCTAC+TGG + chr3.3:80502032-80502051 None:intergenic 35.0%
AAAAGTTCCAGAACCTTCCA+TGG + chr3.3:80502228-80502247 None:intergenic 40.0%
AAAGGAAACATGGAACTAGG+AGG + chr3.3:80504247-80504266 None:intergenic 40.0%
AAGGTTCTTGGGTTTCTGAT+AGG - chr3.3:80502273-80502292 MS.gene049221:intron 40.0%
AAGTAAAAGAAATGACCCGG+TGG + chr3.3:80504729-80504748 None:intergenic 40.0%
AATTAACATGCCAGCAAGAG+CGG - chr3.3:80505375-80505394 MS.gene049221:CDS 40.0%
ACAATTTGCAAGATGGGGAA+GGG - chr3.3:80502357-80502376 MS.gene049221:intron 40.0%
ACCGGGTTATACTGTTTGTA+AGG - chr3.3:80502814-80502833 MS.gene049221:intron 40.0%
ACGGCAAAGGTAAATACGTA+TGG - chr3.3:80502093-80502112 MS.gene049221:CDS 40.0%
AGCTCCCAAATACAAATCCT+AGG + chr3.3:80502626-80502645 None:intergenic 40.0%
AGGAATGGGAATGAGTATGT+TGG - chr3.3:80502392-80502411 MS.gene049221:intron 40.0%
AGGATTTAGAAATGCTGGTG+CGG - chr3.3:80504526-80504545 MS.gene049221:CDS 40.0%
AGTGTTTCATCAGGGAATTG+GGG - chr3.3:80502539-80502558 MS.gene049221:intron 40.0%
ATGTCTTCTCCTGGAAAAAG+TGG - chr3.3:80503346-80503365 MS.gene049221:intron 40.0%
ATGTGAATTTGTCCGATCCA+AGG - chr3.3:80504268-80504287 MS.gene049221:CDS 40.0%
ATTGATAGAGCAATGGTGGT+TGG - chr3.3:80505101-80505120 MS.gene049221:CDS 40.0%
CAAAGGAGAAATTCTGGACA+AGG - chr3.3:80503046-80503065 MS.gene049221:intron 40.0%
CAAAGTCACTTATGGGAATG+TGG - chr3.3:80504614-80504633 MS.gene049221:CDS 40.0%
CAAATCGGTCATCTTGAGTA+AGG + chr3.3:80503384-80503403 None:intergenic 40.0%
CATAAGCGATTTGACCTCAA+AGG - chr3.3:80503856-80503875 MS.gene049221:intron 40.0%
CATACACAGAATCTTTGTGG+AGG - chr3.3:80505630-80505649 MS.gene049221:CDS 40.0%
CATGCAAAATGATGACACTC+AGG - chr3.3:80504334-80504353 MS.gene049221:intron 40.0%
CATTGTGTCAAACCTATTGG+AGG - chr3.3:80503682-80503701 MS.gene049221:CDS 40.0%
CCACCCTAAACTAGCAATAT+TGG - chr3.3:80504821-80504840 MS.gene049221:CDS 40.0%
CCCTTACAAACAGTATAACC+CGG + chr3.3:80502818-80502837 None:intergenic 40.0%
CCGGGTTATACTGTTTGTAA+GGG - chr3.3:80502815-80502834 MS.gene049221:intron 40.0%
CTAAATCACAGATAGAGGAC+TGG + chr3.3:80504932-80504951 None:intergenic 40.0%
CTTATGGGAATGTGGATTCA+TGG - chr3.3:80504622-80504641 MS.gene049221:intron 40.0%
CTTGACTTCAGACTTCTTCA+AGG + chr3.3:80503416-80503435 None:intergenic 40.0%
CTTGTCCAGAATTTCTCCTT+TGG + chr3.3:80503048-80503067 None:intergenic 40.0%
GAAGAATGGGAATCGTTATG+TGG - chr3.3:80502460-80502479 MS.gene049221:intron 40.0%
GAGGTACAATTTGCAAGATG+GGG - chr3.3:80502352-80502371 MS.gene049221:intron 40.0%
GAGTGTTTCATCAGGGAATT+GGG - chr3.3:80502538-80502557 MS.gene049221:intron 40.0%
GATGGAAGTGAATCAGAGAT+TGG - chr3.3:80502713-80502732 MS.gene049221:intron 40.0%
GCTTCTATTTGCATTATGGC+GGG + chr3.3:80504792-80504811 None:intergenic 40.0%
GGAATATAGCTTGGGATCAA+CGG + chr3.3:80505593-80505612 None:intergenic 40.0%
GGGTTTCTGATAGGAAACAT+GGG - chr3.3:80502282-80502301 MS.gene049221:intron 40.0%
GGTAAATACGTATGGAACGA+TGG - chr3.3:80502101-80502120 MS.gene049221:CDS 40.0%
GTAAACACACCTTTCCCTTT+CGG + chr3.3:80502506-80502525 None:intergenic 40.0%
GTTGGGTATTTAGGCATTTG+AGG - chr3.3:80503257-80503276 MS.gene049221:CDS 40.0%
TACAATTTGCAAGATGGGGA+AGG - chr3.3:80502356-80502375 MS.gene049221:intron 40.0%
TACCAAGGAGAATGGAAGAA+AGG - chr3.3:80502131-80502150 MS.gene049221:CDS 40.0%
TACCTTTCTTCCATTCTCCT+TGG + chr3.3:80502136-80502155 None:intergenic 40.0%
TCAAAGGTTCATCTCATGGT+CGG - chr3.3:80503872-80503891 MS.gene049221:intron 40.0%
TCTGATAGGAAACATGGGTT+TGG - chr3.3:80502287-80502306 MS.gene049221:intron 40.0%
TGCATACAAGTCACTACAAG+TGG - chr3.3:80505549-80505568 MS.gene049221:CDS 40.0%
TGGAAGAAAGGTAAAGCATG+GGG - chr3.3:80502143-80502162 MS.gene049221:CDS 40.0%
TGGGTTTCTGATAGGAAACA+TGG - chr3.3:80502281-80502300 MS.gene049221:intron 40.0%
TGTGAATTTGTCCGATCCAA+GGG - chr3.3:80504269-80504288 MS.gene049221:CDS 40.0%
TTATCAGGAAACACACCACA+CGG - chr3.3:80502074-80502093 MS.gene049221:CDS 40.0%
TTATTTCCACCTGAACACCA+CGG + chr3.3:80503142-80503161 None:intergenic 40.0%
TTCTCAGTACAAGAACTCGT+TGG - chr3.3:80503639-80503658 MS.gene049221:CDS 40.0%
TTGTATTTGGGAGCTTGATG+GGG - chr3.3:80502631-80502650 MS.gene049221:intron 40.0%
TTTATTTCAGGGTCCATGGA+AGG - chr3.3:80502212-80502231 MS.gene049221:CDS 40.0%
TTTGACAACAAATGCTGGAG+TGG - chr3.3:80505028-80505047 MS.gene049221:CDS 40.0%
! ACTAGGTAGTCCATACCTTT+TGG + chr3.3:80503708-80503727 None:intergenic 40.0%
! CCAATATTGCTAGTTTAGGG+TGG + chr3.3:80504824-80504843 None:intergenic 40.0%
! CCCACAAATCTTTTAACCCT+TGG + chr3.3:80504288-80504307 None:intergenic 40.0%
! CTAAAATCCACCGATTGATG+GGG + chr3.3:80503102-80503121 None:intergenic 40.0%
! CTTGAAGAAGTCTGAAGTCA+AGG - chr3.3:80503414-80503433 MS.gene049221:CDS 40.0%
! GAATCGTTATGTGGGTTGTT+GGG - chr3.3:80502469-80502488 MS.gene049221:intron 40.0%
! GCTAATGGTGATGTGTATGA+GGG - chr3.3:80502323-80502342 MS.gene049221:intron 40.0%
! GGAATGAGTATGTTGGTGAA+TGG - chr3.3:80502399-80502418 MS.gene049221:intron 40.0%
! GGAGGTACAATTTGCAAGAT+GGG - chr3.3:80502351-80502370 MS.gene049221:intron 40.0%
! GGGCCAATATTGCTAGTTTA+GGG + chr3.3:80504827-80504846 None:intergenic 40.0%
! TATGCTCCTGTTTGTTGAGA+TGG - chr3.3:80504960-80504979 MS.gene049221:CDS 40.0%
! TCGTTGGTTACGAAATTCCT+GGG - chr3.3:80503655-80503674 MS.gene049221:CDS 40.0%
! TGCTAATGGTGATGTGTATG+AGG - chr3.3:80502322-80502341 MS.gene049221:intron 40.0%
! TGGAGGTACAATTTGCAAGA+TGG - chr3.3:80502350-80502369 MS.gene049221:intron 40.0%
! TGGGCCAATATTGCTAGTTT+AGG + chr3.3:80504828-80504847 None:intergenic 40.0%
! TGTGGGATTATGGTTTTTGC+AGG - chr3.3:80504302-80504321 MS.gene049221:CDS 40.0%
!! AGTCCTTGTTATTCGATCGA+TGG - chr3.3:80502779-80502798 MS.gene049221:intron 40.0%
!! CTAAGAGTGTGGTTTTTCCT+AGG - chr3.3:80502606-80502625 MS.gene049221:intron 40.0%
!! GTCCTTGTTATTCGATCGAT+GGG - chr3.3:80502780-80502799 MS.gene049221:intron 40.0%
!! TCCTTGTTATTCGATCGATG+GGG - chr3.3:80502781-80502800 MS.gene049221:intron 40.0%
!! TGGAAATGTGGTGCTATATG+TGG - chr3.3:80502419-80502438 MS.gene049221:intron 40.0%
!! TGTGGTGCTATATGTGGTAA+TGG - chr3.3:80502425-80502444 MS.gene049221:intron 40.0%
!!! AAGAAGCTTCCACTTTTTCC+AGG + chr3.3:80503358-80503377 None:intergenic 40.0%
!!! GAAGGTTCTGGAACTTTTGT+TGG - chr3.3:80502230-80502249 MS.gene049221:CDS 40.0%
!!! GATGTTTGTATTTTGGTGGG+TGG - chr3.3:80503220-80503239 MS.gene049221:intron 40.0%
!!! TTCTGGAACTTTTGTTGGTG+TGG - chr3.3:80502235-80502254 MS.gene049221:CDS 40.0%
AAAGGTAAAGCATGGGGGAA+AGG - chr3.3:80502149-80502168 MS.gene049221:CDS 45.0%
AACGATGGATGCATGTACCA+AGG - chr3.3:80502116-80502135 MS.gene049221:CDS 45.0%
AAGGTAAAGCATGGGGGAAA+GGG - chr3.3:80502150-80502169 MS.gene049221:CDS 45.0%
ACGTATTTACCTTTGCCGTG+TGG + chr3.3:80502092-80502111 None:intergenic 45.0%
ACTCACAGAAACCCTCTTCT+TGG + chr3.3:80502573-80502592 None:intergenic 45.0%
ATACCAGAGGACCTCTAATC+CGG - chr3.3:80505347-80505366 MS.gene049221:CDS 45.0%
ATAGAGCAATGGTGGTTGGT+AGG - chr3.3:80505105-80505124 MS.gene049221:CDS 45.0%
ATAGCAAGCATGTAATCGGC+AGG + chr3.3:80503301-80503320 None:intergenic 45.0%
CAAACCTATTGGAGGCCAAA+AGG - chr3.3:80503690-80503709 MS.gene049221:CDS 45.0%
CCATCAGGAGCTACTTATGA+AGG - chr3.3:80502185-80502204 MS.gene049221:CDS 45.0%
CCTTCATAAGTAGCTCCTGA+TGG + chr3.3:80502188-80502207 None:intergenic 45.0%
CGATGGGGATGTTAAGAAAC+CGG - chr3.3:80502796-80502815 MS.gene049221:intron 45.0%
CTATTGGAGGCCAAAAGGTA+TGG - chr3.3:80503695-80503714 MS.gene049221:CDS 45.0%
GAAAGAGAGCCCAAGAGAAA+CGG + chr3.3:80505263-80505282 None:intergenic 45.0%
GAATGTGGATTCATGGGACA+TGG - chr3.3:80504629-80504648 MS.gene049221:intron 45.0%
GACAACCGATAAACTCCGTA+AGG - chr3.3:80503894-80503913 MS.gene049221:intron 45.0%
GACCATGAGATGAACCTTTG+AGG + chr3.3:80503873-80503892 None:intergenic 45.0%
GACCTCAAAGGTTCATCTCA+TGG - chr3.3:80503868-80503887 MS.gene049221:intron 45.0%
GATGCATGTACCAAGGAGAA+TGG - chr3.3:80502123-80502142 MS.gene049221:CDS 45.0%
GATGGGGATGTTAAGAAACC+GGG - chr3.3:80502797-80502816 MS.gene049221:intron 45.0%
GGAAGAAAGGTAAAGCATGG+GGG - chr3.3:80502144-80502163 MS.gene049221:CDS 45.0%
GGAAGTGAATCAGAGATTGG+TGG - chr3.3:80502716-80502735 MS.gene049221:intron 45.0%
GTAAACTTGGAACCTTCTGG+AGG + chr3.3:80503075-80503094 None:intergenic 45.0%
GTGTTTCATCAGGGAATTGG+GGG - chr3.3:80502540-80502559 MS.gene049221:intron 45.0%
GTTTCTGTGAGTGTGGATGA+TGG - chr3.3:80502581-80502600 MS.gene049221:intron 45.0%
GTTTGACACAATGAACTCCC+AGG + chr3.3:80503675-80503694 None:intergenic 45.0%
TATTTCCACCTGAACACCAC+GGG + chr3.3:80503141-80503160 None:intergenic 45.0%
TCCCCATCGATCGAATAACA+AGG + chr3.3:80502785-80502804 None:intergenic 45.0%
TCTCTTCTGCTTTCATCCAC+CGG - chr3.3:80504710-80504729 MS.gene049221:intron 45.0%
TGTGGTCCATCTCAACAAAC+AGG + chr3.3:80504969-80504988 None:intergenic 45.0%
TTGAGGGAAATGTCTTCTCC+TGG - chr3.3:80503337-80503356 MS.gene049221:intron 45.0%
! AAGGGAAAGGTGTGTTTACG+TGG - chr3.3:80502507-80502526 MS.gene049221:intron 45.0%
! AGGTGTTTTTCTACTGGCGT+CGG + chr3.3:80502026-80502045 None:intergenic 45.0%
! ATGGTGATGTGTATGAGGGT+TGG - chr3.3:80502327-80502346 MS.gene049221:intron 45.0%
! CATACCTTTTGGCCTCCAAT+AGG + chr3.3:80503697-80503716 None:intergenic 45.0%
! CTCGTTGGTTACGAAATTCC+TGG - chr3.3:80503654-80503673 MS.gene049221:CDS 45.0%
! GAGAGTGTGTAAAGCTGGAT+TGG - chr3.3:80505399-80505418 MS.gene049221:CDS 45.0%
! GGAACTTTTGTTGGTGTGGA+AGG - chr3.3:80502239-80502258 MS.gene049221:CDS 45.0%
! GGAATCGTTATGTGGGTTGT+TGG - chr3.3:80502468-80502487 MS.gene049221:intron 45.0%
! GGAGGTATATGTGGAGGAAT+GGG - chr3.3:80502378-80502397 MS.gene049221:intron 45.0%
! GGAGTGTTTCATCAGGGAAT+TGG - chr3.3:80502537-80502556 MS.gene049221:intron 45.0%
! TATGTGGGTTGTTGGGAGAA+TGG - chr3.3:80502476-80502495 MS.gene049221:intron 45.0%
! TTAATTCCCAGCCGGATTAG+AGG + chr3.3:80505361-80505380 None:intergenic 45.0%
! TTGTGTTGGGAAGCATGCTT+CGG - chr3.3:80502990-80503009 MS.gene049221:intron 45.0%
! TTTGCTACTTGCATGCGCAT+GGG + chr3.3:80504847-80504866 None:intergenic 45.0%
!! GAATCAGAGATTGGTGGTGT+TGG - chr3.3:80502722-80502741 MS.gene049221:intron 45.0%
!! GGATGATGGTTCTAAGAGTG+TGG - chr3.3:80502595-80502614 MS.gene049221:intron 45.0%
!! GTGATGGGAGTGTTTCATCA+GGG - chr3.3:80502531-80502550 MS.gene049221:intron 45.0%
!! GTGTTGGTGTTGGTGATGTA+GGG - chr3.3:80502738-80502757 MS.gene049221:intron 45.0%
!!! TCTTAGTTTTGCCTTTCGCC+TGG - chr3.3:80503951-80503970 MS.gene049221:CDS 45.0%
AATGGTGTGCCGAAAGGGAA+AGG - chr3.3:80502494-80502513 MS.gene049221:intron 50.0%
ATCAACGGCTGAGATGGATG+TGG + chr3.3:80505578-80505597 None:intergenic 50.0%
ATCCTGATGAGCACCTGACA+TGG + chr3.3:80503595-80503614 None:intergenic 50.0%
ATCTCACCGCTACTCTCTGA+AGG + chr3.3:80505457-80505476 None:intergenic 50.0%
ATGACACTCAGGACACGAGA+TGG - chr3.3:80504345-80504364 MS.gene049221:intron 50.0%
ATGGAAAGACTACTGTCCCG+TGG - chr3.3:80503122-80503141 MS.gene049221:intron 50.0%
ATTTGCAAGATGGGGAAGGG+AGG - chr3.3:80502360-80502379 MS.gene049221:intron 50.0%
CCATTATTCCCTCTGCTTCC+AGG + chr3.3:80504122-80504141 None:intergenic 50.0%
CCTGGAAGCAGAGGGAATAA+TGG - chr3.3:80504119-80504138 MS.gene049221:intron 50.0%
CTCTTCTGCTTTCATCCACC+GGG - chr3.3:80504711-80504730 MS.gene049221:intron 50.0%
CTGGCATGTTAATTCCCAGC+CGG + chr3.3:80505369-80505388 None:intergenic 50.0%
CTTGAAACCAAGACTGCTCC+AGG + chr3.3:80503972-80503991 None:intergenic 50.0%
GAAGAGGGTTTCTGTGAGTG+TGG - chr3.3:80502574-80502593 MS.gene049221:intron 50.0%
GACACGAGATGGATACCCAT+AGG - chr3.3:80504356-80504375 MS.gene049221:intron 50.0%
GCGCATGCAAGTAGCAAAGA+GGG - chr3.3:80504849-80504868 MS.gene049221:CDS 50.0%
GGATTGGATCAGCAGCAAAC+TGG - chr3.3:80505415-80505434 MS.gene049221:CDS 50.0%
GGCGTAAACTTGGAACCTTC+TGG + chr3.3:80503078-80503097 None:intergenic 50.0%
GGGAAATTCTCATGGCCATC+AGG - chr3.3:80502170-80502189 MS.gene049221:CDS 50.0%
GGGGAATGATGCCAAGAAGA+GGG - chr3.3:80502559-80502578 MS.gene049221:intron 50.0%
GGGGGAAAGGGAAATTCTCA+TGG - chr3.3:80502162-80502181 MS.gene049221:CDS 50.0%
GTGATGTGTATGAGGGTTGG+TGG - chr3.3:80502330-80502349 MS.gene049221:intron 50.0%
GTGTGTTTACGTGGCGTGAT+GGG - chr3.3:80502516-80502535 MS.gene049221:intron 50.0%
GTTTACGCCTCCCCATCAAT+CGG - chr3.3:80503089-80503108 MS.gene049221:intron 50.0%
TCAACGGCTGAGATGGATGT+GGG + chr3.3:80505577-80505596 None:intergenic 50.0%
TCTACCCCTTCAGAGAGTAG+CGG - chr3.3:80505448-80505467 MS.gene049221:CDS 50.0%
TCTCACCGCTACTCTCTGAA+GGG + chr3.3:80505456-80505475 None:intergenic 50.0%
TCTCCTGATCTAAGCTCTCG+AGG + chr3.3:80503018-80503037 None:intergenic 50.0%
TGATAGAGACTGTGAGCTCC+TGG - chr3.3:80504101-80504120 MS.gene049221:intron 50.0%
TGCGCATGCAAGTAGCAAAG+AGG - chr3.3:80504848-80504867 MS.gene049221:CDS 50.0%
TGGACAAGGTTTCCTCCAGA+AGG - chr3.3:80503060-80503079 MS.gene049221:intron 50.0%
TGTATACGTCGCCGTTTGGA+AGG + chr3.3:80502046-80502065 None:intergenic 50.0%
! AAATCCACCGATTGATGGGG+AGG + chr3.3:80503099-80503118 None:intergenic 50.0%
! AAGAGTGCATACCGGCCTAT+GGG + chr3.3:80504374-80504393 None:intergenic 50.0%
! ATGGGGAAGGGAGGTATATG+TGG - chr3.3:80502369-80502388 MS.gene049221:intron 50.0%
! CTTTGCTACTTGCATGCGCA+TGG + chr3.3:80504848-80504867 None:intergenic 50.0%
! GGGAGGTATATGTGGAGGAA+TGG - chr3.3:80502377-80502396 MS.gene049221:intron 50.0%
! GTTGGTAGGACTTGAGGCTT+AGG - chr3.3:80505119-80505138 MS.gene049221:CDS 50.0%
! TTGATGGGGAGGCGTAAACT+TGG + chr3.3:80503088-80503107 None:intergenic 50.0%
!! ATGGTGGTTGGTAGGACTTG+AGG - chr3.3:80505113-80505132 MS.gene049221:CDS 50.0%
!! ATGTGTATGAGGGTTGGTGG+AGG - chr3.3:80502333-80502352 MS.gene049221:intron 50.0%
!! CGTGATGGGAGTGTTTCATC+AGG - chr3.3:80502530-80502549 MS.gene049221:intron 50.0%
!! GAGATTGGTGGTGTTGGTGT+TGG - chr3.3:80502728-80502747 MS.gene049221:intron 50.0%
!! GATTAGTTGGTGGCCATGTC+AGG - chr3.3:80503579-80503598 MS.gene049221:intron 50.0%
!! GGTGTTGGTGATGTAGGGTA+TGG - chr3.3:80502743-80502762 MS.gene049221:intron 50.0%
!! GGTGTTGGTGTTGGTGATGT+AGG - chr3.3:80502737-80502756 MS.gene049221:intron 50.0%
ACTACTGTCCCGTGGTGTTC+AGG - chr3.3:80503130-80503149 MS.gene049221:intron 55.0%
AGAGGACCTCTAATCCGGCT+GGG - chr3.3:80505352-80505371 MS.gene049221:CDS 55.0%
CAACGGCTGAGATGGATGTG+GGG + chr3.3:80505576-80505595 None:intergenic 55.0%
CCAAACGGCGACGTATACAG+TGG - chr3.3:80502047-80502066 MS.gene049221:CDS 55.0%
CCACTGTATACGTCGCCGTT+TGG + chr3.3:80502050-80502069 None:intergenic 55.0%
CGAGATGGATACCCATAGGC+CGG - chr3.3:80504360-80504379 MS.gene049221:intron 55.0%
CTTGGGATCAACGGCTGAGA+TGG + chr3.3:80505584-80505603 None:intergenic 55.0%
GGAAACACACCACACGGCAA+AGG - chr3.3:80502080-80502099 MS.gene049221:CDS 55.0%
GGGAGAATGGTGTGCCGAAA+GGG - chr3.3:80502489-80502508 MS.gene049221:intron 55.0%
GGGGGAATGATGCCAAGAAG+AGG - chr3.3:80502558-80502577 MS.gene049221:intron 55.0%
GGTGTGTTTACGTGGCGTGA+TGG - chr3.3:80502515-80502534 MS.gene049221:intron 55.0%
GTGCCTCGAGAGCTTAGATC+AGG - chr3.3:80503012-80503031 MS.gene049221:intron 55.0%
TCAGGGTCCATGGAAGGTTC+TGG - chr3.3:80502218-80502237 MS.gene049221:CDS 55.0%
TGGGAGAATGGTGTGCCGAA+AGG - chr3.3:80502488-80502507 MS.gene049221:intron 55.0%
TGTGAGCTCCTGGAAGCAGA+GGG - chr3.3:80504111-80504130 MS.gene049221:intron 55.0%
! CTCACCGCTACTCTCTGAAG+GGG + chr3.3:80505455-80505474 None:intergenic 55.0%
! GAAGAGTGCATACCGGCCTA+TGG + chr3.3:80504375-80504394 None:intergenic 55.0%
! GCGGAGAGAGTGTGTAAAGC+TGG - chr3.3:80505394-80505413 MS.gene049221:CDS 55.0%
! GGGAAGGGAGGTATATGTGG+AGG - chr3.3:80502372-80502391 MS.gene049221:intron 55.0%
ACTGTCCCGTGGTGTTCAGG+TGG - chr3.3:80503133-80503152 MS.gene049221:intron 60.0%
CACACTCTCTCCGCTCTTGC+TGG + chr3.3:80505388-80505407 None:intergenic 60.0%
CAGAGGACCTCTAATCCGGC+TGG - chr3.3:80505351-80505370 MS.gene049221:CDS 60.0%
CCAAGACTGCTCCAGGCGAA+AGG + chr3.3:80503965-80503984 None:intergenic 60.0%
CCTTTCGCCTGGAGCAGTCT+TGG - chr3.3:80503962-80503981 MS.gene049221:CDS 60.0%
CTGTGAGCTCCTGGAAGCAG+AGG - chr3.3:80504110-80504129 MS.gene049221:intron 60.0%
GGCCATGTCAGGTGCTCATC+AGG - chr3.3:80503590-80503609 MS.gene049221:intron 60.0%
TACGCCTCCCCATCAATCGG+TGG - chr3.3:80503092-80503111 MS.gene049221:intron 60.0%
TGGGAGCTTGATGGGGAAGC+TGG - chr3.3:80502638-80502657 MS.gene049221:intron 60.0%
! CAGCCGGATTAGAGGTCCTC+TGG + chr3.3:80505353-80505372 None:intergenic 60.0%
GCCGTCGACCACCGCGAACA+CGG - chr3.3:80501991-80502010 MS.gene049221:CDS 70.0%
GCCGTGTTCGCGGTGGTCGA+CGG + chr3.3:80501995-80502014 None:intergenic 70.0%
GGTGACACGCGCCGTGTTCG+CGG + chr3.3:80502005-80502024 None:intergenic 70.0%
GTTCGCGGTGGTCGACGGCA+TGG + chr3.3:80501990-80502009 None:intergenic 70.0%
GACACGCGCCGTGTTCGCGG+TGG + chr3.3:80502002-80502021 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 80501960 80505660 80501960 ID=MS.gene049221
chr3.3 mRNA 80501960 80505660 80501960 ID=MS.gene049221.t1;Parent=MS.gene049221
chr3.3 exon 80504738 80505660 80504738 ID=MS.gene049221.t1.exon1;Parent=MS.gene049221.t1
chr3.3 CDS 80504738 80505660 80504738 ID=cds.MS.gene049221.t1;Parent=MS.gene049221.t1
chr3.3 exon 80504469 80504633 80504469 ID=MS.gene049221.t1.exon2;Parent=MS.gene049221.t1
chr3.3 CDS 80504469 80504633 80504469 ID=cds.MS.gene049221.t1;Parent=MS.gene049221.t1
chr3.3 exon 80504185 80504350 80504185 ID=MS.gene049221.t1.exon3;Parent=MS.gene049221.t1
chr3.3 CDS 80504185 80504350 80504185 ID=cds.MS.gene049221.t1;Parent=MS.gene049221.t1
chr3.3 exon 80503909 80504019 80503909 ID=MS.gene049221.t1.exon4;Parent=MS.gene049221.t1
chr3.3 CDS 80503909 80504019 80503909 ID=cds.MS.gene049221.t1;Parent=MS.gene049221.t1
chr3.3 exon 80503619 80503812 80503619 ID=MS.gene049221.t1.exon5;Parent=MS.gene049221.t1
chr3.3 CDS 80503619 80503812 80503619 ID=cds.MS.gene049221.t1;Parent=MS.gene049221.t1
chr3.3 exon 80503395 80503525 80503395 ID=MS.gene049221.t1.exon6;Parent=MS.gene049221.t1
chr3.3 CDS 80503395 80503525 80503395 ID=cds.MS.gene049221.t1;Parent=MS.gene049221.t1
chr3.3 exon 80503239 80503296 80503239 ID=MS.gene049221.t1.exon7;Parent=MS.gene049221.t1
chr3.3 CDS 80503239 80503296 80503239 ID=cds.MS.gene049221.t1;Parent=MS.gene049221.t1
chr3.3 exon 80501960 80502266 80501960 ID=MS.gene049221.t1.exon8;Parent=MS.gene049221.t1
chr3.3 CDS 80501960 80502266 80501960 ID=cds.MS.gene049221.t1;Parent=MS.gene049221.t1
Gene Sequence

>MS.gene049221

ATGGAAGTAGTAATAGTATCATCATCACCATGCCGTCGACCACCGCGAACACGGCGCGTGTCACCGACGCCAGTAGAAAAACACCTTCCAAACGGCGACGTATACAGTGGAAGTTTATCAGGAAACACACCACACGGCAAAGGTAAATACGTATGGAACGATGGATGCATGTACCAAGGAGAATGGAAGAAAGGTAAAGCATGGGGGAAAGGGAAATTCTCATGGCCATCAGGAGCTACTTATGAAGGTGATTTTATTTCAGGGTCCATGGAAGGTTCTGGAACTTTTGTTGGTGTGGAAGGTGATACTTATAAAGGTTCTTGGGTTTCTGATAGGAAACATGGGTTTGGTGAGAAATGTTATGCTAATGGTGATGTGTATGAGGGTTGGTGGAGGTACAATTTGCAAGATGGGGAAGGGAGGTATATGTGGAGGAATGGGAATGAGTATGTTGGTGAATGGAAATGTGGTGCTATATGTGGTAATGGTGTTTTAATTTGGAAGAATGGGAATCGTTATGTGGGTTGTTGGGAGAATGGTGTGCCGAAAGGGAAAGGTGTGTTTACGTGGCGTGATGGGAGTGTTTCATCAGGGAATTGGGGGAATGATGCCAAGAAGAGGGTTTCTGTGAGTGTGGATGATGGTTCTAAGAGTGTGGTTTTTCCTAGGATTTGTATTTGGGAGCTTGATGGGGAAGCTGGTGATATTACTTGTGATATTGTTGATAATGTGGAAGCTTGTATGTTTTATAGAGATGGAAGTGAATCAGAGATTGGTGGTGTTGGTGTTGGTGATGTAGGGTATGGACATTCACAGAAGAGTCCTTGTTATTCGATCGATGGGGATGTTAAGAAACCGGGTTATACTGTTTGTAAGGGACATAAGAACTATGATTTGATTCTTAATCTTCAATTGGGTATTAGGTGTGTTGTTTTGTGTTATCTACATTGTTAGTTTGGATTTGGATTTGGTTTATTTTTATGTGTTTGGCGTTTTTAATAAGATTGTGGTTTTGTTTTTGTTTTAGATATTGTGTTGGGAAGCATGCTTCGGTGCCTCGAGAGCTTAGATCAGGAGATTTTGATCCAAAGGAGAAATTCTGGACAAGGTTTCCTCCAGAAGGTTCCAAGTTTACGCCTCCCCATCAATCGGTGGATTTTAGATGGAAAGACTACTGTCCCGTGGTGTTCAGGTGGAAATAATATCTGAATCAATTTTCTTATATGTTGATTGTTTAATTGATGTTATGTGTGTATTAATGATGTTTGTATTTTGGTGGGTGGTTGTTTGTTTCTTTGTTGGGTATTTAGGCATTTGAGGGAATTATTTGCGATTGATCCTGCCGATTACATGCTTGCTATTTGTGGCAATGATACATTGAGGGAAATGTCTTCTCCTGGAAAAAGTGGAAGCTTCTTTTACCTTACTCAAGATGACCGATTTGTAATCAAAACCTTGAAGAAGTCTGAAGTCAAGGTTAGTTGTTAGTTCCTAGCCTTAATTAATTACTAGACTTGAAAAAGCATTATGTTTGATGAGAAAAGTATAAAACCTATATTGAGCAAGGTGAAATTTCAATCACAGCTTTTAGTCACTATGCTTTTTTCCTCTGTTTCAATGATTAGTTGGTGGCCATGTCAGGTGCTCATCAGGATGCTTCCCAGTTACTATCAACATGTTTCTCAGTACAAGAACTCGTTGGTTACGAAATTCCTGGGAGTTCATTGTGTCAAACCTATTGGAGGCCAAAAGGTATGGACTACCTAGTTTAAATTTTGCACTGAACTGATGTACTATATGAATGTTTGTAATAATATAATGAATACTTGTATTGCTATGGAAAAACAGACCCGATTTATTGTAATGGGCAATGTGTTTTGTTCGGAGTATCGAATTCATAAGCGATTTGACCTCAAAGGTTCATCTCATGGTCGGACAACCGATAAACTCCGTAAGGATATTGATGAGACTACTACTCTTAAAGACCTTGATCTTAGTTTTGCCTTTCGCCTGGAGCAGTCTTGGTTTCAAGAGCTAAAATGGTACAGAATTTACGTCCTTGTGTAAAGTTTCTTTCACTTTTAGCATTTTTATGATGTTCTTAGAGTTGGTCTTTTGTAATGATTTTTGCTCAGGCAACTTGATAGAGACTGTGAGCTCCTGGAAGCAGAGGGAATAATGGACTACAGTTTTCTCATTGGCCTTCATTTTCGTGATGATTACTCATCGGATGAAATGAAAAGTTCACCTAATGAATTGTGTTCTGGTATGTGTCTTCTTGCTTCCTCCTAGTTCCATGTTTCCTTTCATGTGAATTTGTCCGATCCAAGGGTTAAAAGATTTGTGGGATTATGGTTTTTGCAGGCAAGAGAGACATGCAAAATGATGACACTCAGGACACGAGATGGATACCCATAGGCCGGTATGCACTCTTCACTTTATCACCGTATCTGATTGTTTTTGTTGTTTCAGCTTGGTGAATAAATCCTTGTGAAATTATAAAAATTTACTGCTAAGATTGTCTTCCTTGAATTTTCCATATTTAGTCCCAAAGAGATAAGTTTTGAGGATTTAGAAATGCTGGTGCGGTTCTACTATTAGCTTAAGCTGTTATGTGAATTCCAACCCATCATTTATTGATTTGTTCTAGAAATCAAAGTCACTTATGGGAATGTGGATTCATGGGACATGGACCATTTTTTATTGCTACATTTTATGAAAAGATTATTCATTTAGGATATAGCAGTTTGTCTCTTCTGCTTTCATCCACCGGGTCATTTCTTTTACTTTTATGCATGTGCCATGTTCTTGAGCTTTAGTCTATCTGGACCCGCCATAATGCAAATAGAAGCAAAATGCTTCCACCCTAAACTAGCAATATTGGCCCATGCGCATGCAAGTAGCAAAGAGGGATATGAACCACTACTAGTCATGTAGAAATAAAGCAGTGGCAGATGAATTAGCATTCTCCAGTCCTCTATCTGTGATTTAGAAGTGACATATGCTCCTGTTTGTTGAGATGGACCACAATGACTTGATTTGTCATGGCCAATGTTATAGTAAGTTTTTTTGACAACAAATGCTGGAGTGGTCGTTTGAGCAGAACCTTCTCTGTAAAGCTATTTGTTAGTTGACAATGATATTGATAGAGCAATGGTGGTTGGTAGGACTTGAGGCTTAGGAAATACATTTGTGTGCCAGTTACATATAAATATTGACATTTTTTCTGATATACATTACTCTTTCTTTGTTAAAAATGCTAAATTCTAAACTGTATTTTAAGTCATAAGTTTTAGTAATCCGTTTCTCTTGGGCTCTCTTTCTTATGTGAGTTTACATCCTAACTATGCAGATATTTAATATTTGATTTGAATTATGATTCTTGATATACCAGAGGACCTCTAATCCGGCTGGGAATTAACATGCCAGCAAGAGCGGAGAGAGTGTGTAAAGCTGGATTGGATCAGCAGCAAACTGGAAGTAGCAAATCTACCCCTTCAGAGAGTAGCGGTGAGATCTCTGATGTAATCCTTTATTTTGGCATCATTGACATTCTCCAAGATTATGATATTAGCAAAAAGCTAGAGCATGCATACAAGTCACTACAAGTGGACCCCACATCCATCTCAGCCGTTGATCCCAAGCTATATTCCAAAAGGTTTAGGGATTTCATACACAGAATCTTTGTGGAGGACAAATAA
Protein sequence

>MS.gene049221.t1

MEVVIVSSSPCRRPPRTRRVSPTPVEKHLPNGDVYSGSLSGNTPHGKGKYVWNDGCMYQGEWKKGKAWGKGKFSWPSGATYEGDFISGSMEGSGTFVGVEGDTYKGSWVSDRKHGFGEKCYANGDVYEGWWRYNLQDGEGRYMWRNGNEYVGEWKCGAICGNGVLIWKNGNRYVGCWENGVPKGKGVFTWRDGSVSSGNWGNDAKKRVSVSVDDGSKSVVFPRICIWELDGEAGDITCDIVDNVEACMFYRDGSESEIGGVGVGDVGYGHSQKSPCYSIDGDVKKPGYTVCKGHKNYDLILNLQLGIRYCVGKHASVPRELRSGDFDPKEKFWTRFPPEGSKFTPPHQSVDFRWKDYCPVVFRHLRELFAIDPADYMLAICGNDTLREMSSPGKSGSFFYLTQDDRFVIKTLKKSEVKVLIRMLPSYYQHVSQYKNSLVTKFLGVHCVKPIGGQKTRFIVMGNVFCSEYRIHKRFDLKGSSHGRTTDKLRKDIDETTTLKDLDLSFAFRLEQSWFQELKWQLDRDCELLEAEGIMDYSFLIGLHFRDDYSSDEMKSSPNELCSGKRDMQNDDTQDTRWIPIGRGPLIRLGINMPARAERVCKAGLDQQQTGSSKSTPSESSGEISDVILYFGIIDILQDYDISKKLEHAYKSLQVDPTSISAVDPKLYSKRFRDFIHRIFVEDK