AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79601

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79601.t1 MTR_7g010300 94.813 347 9 6 1 344 1 341 0.0 652
MS.gene79601.t1 MTR_6g012280 62.082 269 85 7 36 296 36 295 5.03e-77 240
MS.gene79601.t1 MTR_1g077020 44.828 203 86 6 87 285 6 186 2.10e-52 172
MS.gene79601.t1 MTR_3g100650 43.541 209 96 5 87 285 77 273 1.23e-48 165
MS.gene79601.t1 MTR_5g020510 43.062 209 100 7 88 286 97 296 3.39e-48 164
MS.gene79601.t1 MTR_5g032600 44.811 212 83 7 90 285 78 271 1.15e-46 159
MS.gene79601.t1 MTR_4g134580 40.928 237 98 9 90 286 113 347 6.63e-45 157
MS.gene79601.t1 MTR_5g065440 39.738 229 102 6 82 285 50 267 4.21e-44 152
MS.gene79601.t1 MTR_2g076780 38.785 214 99 6 90 285 37 236 3.22e-40 142
MS.gene79601.t1 MTR_6g073013 38.860 193 66 5 90 281 19 160 1.75e-37 132
MS.gene79601.t1 MTR_8g069080 36.792 212 97 6 90 281 69 263 4.97e-36 131
MS.gene79601.t1 MTR_8g467340 75.410 61 15 0 87 147 61 121 9.74e-27 109
MS.gene79601.t1 MTR_8g069380 55.224 67 30 0 219 285 48 114 6.61e-20 84.3
MS.gene79601.t1 MTR_8g051480 59.701 67 26 1 219 285 63 128 2.31e-19 83.2
MS.gene79601.t1 MTR_3g039810 51.899 79 30 2 80 158 10 80 1.11e-17 77.4
MS.gene79601.t1 MTR_6g012220 57.895 57 18 1 84 140 15 65 6.27e-17 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79601.t1 AT5G15210 49.817 273 100 9 23 287 3 246 7.36e-72 224
MS.gene79601.t1 AT1G69600 53.659 205 67 5 88 282 29 215 2.12e-65 207
MS.gene79601.t1 AT3G28920 48.039 306 107 10 23 301 1 281 3.08e-62 201
MS.gene79601.t1 AT5G39760 45.907 281 114 9 33 297 17 275 9.13e-56 185
MS.gene79601.t1 AT1G14440 44.796 221 96 6 85 293 85 291 7.02e-52 174
MS.gene79601.t1 AT1G14440 44.796 221 96 6 85 293 85 291 7.02e-52 174
MS.gene79601.t1 AT2G02540 42.152 223 108 6 87 297 84 297 5.10e-51 172
MS.gene79601.t1 AT2G02540 42.152 223 108 6 87 297 84 297 5.10e-51 172
MS.gene79601.t1 AT4G24660 45.455 198 83 4 88 285 47 219 2.91e-50 167
MS.gene79601.t1 AT4G24660 45.641 195 81 4 88 282 47 216 2.31e-49 165
MS.gene79601.t1 AT5G60480 43.939 198 78 5 87 279 34 203 1.35e-48 163
MS.gene79601.t1 AT5G65410 43.655 197 94 5 88 284 73 252 1.00e-44 155
MS.gene79601.t1 AT1G75240 38.559 236 104 4 85 284 71 301 1.29e-44 155
MS.gene79601.t1 AT2G18350 39.899 198 100 4 90 286 82 261 2.38e-41 145
MS.gene79601.t1 AT3G50890 40.580 207 96 8 90 289 60 246 3.31e-35 129
MS.gene79601.t1 AT5G42780 35.204 196 103 5 90 282 64 238 3.17e-28 110
MS.gene79601.t1 AT1G14687 28.283 198 106 4 85 280 2 165 5.66e-20 86.3
MS.gene79601.t1 AT1G74660 53.521 71 25 2 88 158 37 99 3.49e-19 82.0
MS.gene79601.t1 AT1G74660 61.111 54 19 1 88 141 37 88 8.26e-19 80.9
MS.gene79601.t1 AT1G18835 54.930 71 21 2 88 158 24 83 1.26e-17 77.4
MS.gene79601.t1 AT3G28917 61.404 57 21 1 87 143 30 85 2.99e-17 76.6

Find 94 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTGTTGGTGTTGGGTT+TGG 0.168351 7.3:-87786131 None:intergenic
GTGGTGTTGGTGTTGGGTTT+GGG 0.177168 7.3:-87786130 None:intergenic
ACAATTCTAGAAAGCGTTTC+AGG 0.216225 7.3:+87786777 MS.gene79601:CDS
TTGAGAACACCATTTGAAAA+AGG 0.255600 7.3:-87786290 None:intergenic
AGGGGCGGAGGGGTAGTAAG+AGG 0.274253 7.3:-87786672 None:intergenic
TGCTCTCTCCGCCGCCTTAC+CGG 0.274469 7.3:+87786706 MS.gene79601:CDS
GGTGGTGGTGAGGAGGAATT+TGG 0.278567 7.3:-87786641 None:intergenic
TCAGTTTCATGTTGTTGTTC+TGG 0.293454 7.3:-87786221 None:intergenic
GAGACATTCTTTGTAGGTTA+TGG 0.295956 7.3:-87786378 None:intergenic
TATGGTGGGTTGATGGTTGT+TGG 0.309051 7.3:-87786360 None:intergenic
GTTGGTGGTGGTGTTGGTGT+TGG 0.315255 7.3:-87786137 None:intergenic
GTGGAAAGTGGTGGTTCTTC+AGG 0.318129 7.3:-87786542 None:intergenic
TGTAGGTTATGGTGGGTTGA+TGG 0.319220 7.3:-87786367 None:intergenic
TGTTGTAGAGGTTGTTAATA+TGG 0.321590 7.3:-87786183 None:intergenic
ATCGTAGTGTTCTTAAGGTT+TGG 0.334173 7.3:+87786918 MS.gene79601:CDS
GTTATTGATGTTGTTGATGT+TGG 0.337017 7.3:-87786155 None:intergenic
TTGGTGGTGGTGTTGGTGTT+GGG 0.341399 7.3:-87786136 None:intergenic
GGTTGAAGTGGTGGTGGTGG+TGG 0.346158 7.3:-87786325 None:intergenic
TTCATCAACATGGTTTGGTT+TGG 0.350778 7.3:-87786743 None:intergenic
TGTTGATCGTAGTGTTCTTA+AGG 0.355414 7.3:+87786913 MS.gene79601:CDS
GGAGTAACTGTTCGTGCTAA+TGG 0.375764 7.3:+87787112 MS.gene79601:CDS
AAGAAGCATGTGAGGGGCGG+AGG 0.375917 7.3:-87786684 None:intergenic
GAGAATTCATCAACATGGTT+TGG 0.380377 7.3:-87786748 None:intergenic
CACAAGAATGTTGAGATTCA+TGG 0.386670 7.3:+87787049 MS.gene79601:CDS
ATTTGGGCTCCGGTGGGAAA+AGG 0.392682 7.3:-87786624 None:intergenic
TGGTGTTGGTGTTGGGTTTG+GGG 0.393060 7.3:-87786129 None:intergenic
CAGAATGAAAGTGGAGTTGT+TGG 0.408855 7.3:+87787091 MS.gene79601:CDS
TGGGTTTGGGGTTATGTCCA+TGG 0.410529 7.3:-87786117 None:intergenic
GTTGATGTTGGTGGTGGTGT+TGG 0.411979 7.3:-87786143 None:intergenic
GTTCTTCAGGTTCACGGCGG+TGG 0.414474 7.3:-87786529 None:intergenic
CTGAAATTTGCTGAGAAAGT+TGG 0.415196 7.3:+87786833 MS.gene79601:CDS
TGAATTCACCACAACCATCT+AGG 0.423468 7.3:-87786433 None:intergenic
CGGTGGGAAAAGGGTGGTGG+TGG 0.426898 7.3:-87786614 None:intergenic
GAAAAGGGTGGTGGTGGAAG+TGG 0.427112 7.3:-87786608 None:intergenic
TTGTTCTGGTGATTTAGTTA+AGG 0.427703 7.3:-87786207 None:intergenic
GATGGTTGTTGGTGGTGTTG+TGG 0.428385 7.3:-87786349 None:intergenic
CTCCGGTGGGAAAAGGGTGG+TGG 0.429757 7.3:-87786617 None:intergenic
GGTGGTTGAAGTGGTGGTGG+TGG 0.435301 7.3:-87786328 None:intergenic
GGAGGAGATCGGTGGTGGTG+AGG 0.437213 7.3:-87786651 None:intergenic
GGGTAGTAAGAGGAGGAGAT+CGG 0.438670 7.3:-87786662 None:intergenic
ATTGATGTTGTTGATGTTGG+TGG 0.439116 7.3:-87786152 None:intergenic
GGCGGAGGGGTAGTAAGAGG+AGG 0.440166 7.3:-87786669 None:intergenic
GTGGTGGTGAGGAGGAATTT+GGG 0.444504 7.3:-87786640 None:intergenic
CTAGGTGGTCATGCCCTAGA+TGG 0.446320 7.3:+87786419 MS.gene79601:CDS
ACATTCTTTGTAGGTTATGG+TGG 0.457146 7.3:-87786375 None:intergenic
GGGCTCCGGTGGGAAAAGGG+TGG 0.457386 7.3:-87786620 None:intergenic
GTTCACGGCGGTGGAAGTTA+CGG 0.458240 7.3:-87786520 None:intergenic
GGTGGGTTGATGGTTGTTGG+TGG 0.463067 7.3:-87786357 None:intergenic
GTAGAGGTTGTTAATATGGT+TGG 0.463610 7.3:-87786179 None:intergenic
TTTAAGGATGTTGGGTCGGT+TGG 0.464594 7.3:-87786476 None:intergenic
TGAAATTTGCTGAGAAAGTT+GGG 0.467964 7.3:+87786834 MS.gene79601:CDS
TGTGGTGGTTGAAGTGGTGG+TGG 0.482629 7.3:-87786331 None:intergenic
CATTCTTTGTAGGTTATGGT+GGG 0.482848 7.3:-87786374 None:intergenic
AATCATTATCAGAATGAAAG+TGG 0.483231 7.3:+87787082 MS.gene79601:CDS
TGGTGTTGTGGTGGTTGAAG+TGG 0.484034 7.3:-87786337 None:intergenic
GGAGATCGGTGGTGGTGAGG+AGG 0.490231 7.3:-87786648 None:intergenic
TGTTGTGGTGGTTGAAGTGG+TGG 0.495077 7.3:-87786334 None:intergenic
AGAAGCATGTGAGGGGCGGA+GGG 0.495592 7.3:-87786683 None:intergenic
GGGTCGGTTGGTGTTGCTGT+GGG 0.497066 7.3:-87786464 None:intergenic
GTGGTGGTTCTTCAGGTTCA+CGG 0.497308 7.3:-87786535 None:intergenic
TAAGAGGAGGAGATCGGTGG+TGG 0.498462 7.3:-87786656 None:intergenic
GTGAGGAGGAATTTGGGCTC+CGG 0.500275 7.3:-87786634 None:intergenic
GTGGTGGAAGTGGTTGATGA+CGG 0.500583 7.3:-87786598 None:intergenic
AGGAGGAATTTGGGCTCCGG+TGG 0.505710 7.3:-87786631 None:intergenic
TTTGGGCTCCGGTGGGAAAA+GGG 0.507171 7.3:-87786623 None:intergenic
TTTAGTTAAGGTTGTTGTAG+AGG 0.517562 7.3:-87786195 None:intergenic
AATAACAATGAGATTAATGA+TGG 0.520304 7.3:+87786986 MS.gene79601:CDS
GATGTTGTTGATGTTGGTGG+TGG 0.521895 7.3:-87786149 None:intergenic
GACCACCTAGGTTTGCTGCA+TGG 0.528612 7.3:-87786406 None:intergenic
GGTTGTTGGTGGTGTTGTGG+TGG 0.530020 7.3:-87786346 None:intergenic
GAATTCACCACAACCATCTA+GGG 0.539304 7.3:-87786432 None:intergenic
ACATGAGTTGTGGTGGAAAG+TGG 0.548946 7.3:-87786554 None:intergenic
GAGAGAGCAAGAAGCATGTG+AGG 0.550052 7.3:-87786692 None:intergenic
GAAGCATGTGAGGGGCGGAG+GGG 0.553313 7.3:-87786682 None:intergenic
TGTTCTTCATCTTCAACAAG+AGG 0.561963 7.3:-87787028 None:intergenic
TGGGTCGGTTGGTGTTGCTG+TGG 0.568822 7.3:-87786465 None:intergenic
TCCTTAAAATGTGCTGCTTG+TGG 0.574232 7.3:+87786491 MS.gene79601:CDS
GGTCATGCCCTAGATGGTTG+TGG 0.575703 7.3:+87786425 MS.gene79601:CDS
TAGTAAGAGGAGGAGATCGG+TGG 0.577001 7.3:-87786659 None:intergenic
TTCAATGACATGAGTTGTGG+TGG 0.585624 7.3:-87786561 None:intergenic
AGCAAGAAGCATGTGAGGGG+CGG 0.594492 7.3:-87786687 None:intergenic
AGAGAGCAAGAAGCATGTGA+GGG 0.597359 7.3:-87786691 None:intergenic
GTGGAAGTGGTTGATGACGG+TGG 0.599219 7.3:-87786595 None:intergenic
GAGAGCAAGAAGCATGTGAG+GGG 0.602424 7.3:-87786690 None:intergenic
ATATTCAATGACATGAGTTG+TGG 0.623812 7.3:-87786564 None:intergenic
AGTGGTTGATGACGGTGGTG+AGG 0.625162 7.3:-87786590 None:intergenic
GGAGGAATTTGGGCTCCGGT+GGG 0.630361 7.3:-87786630 None:intergenic
AGAGTGAGAATTCATCAACA+TGG 0.636406 7.3:-87786753 None:intergenic
CATCTAGGGCATGACCACCT+AGG 0.648371 7.3:-87786418 None:intergenic
TGAGTTGTGGTGGAAAGTGG+TGG 0.661282 7.3:-87786551 None:intergenic
CACGGCGGTGGAAGTTACGG+TGG 0.670619 7.3:-87786517 None:intergenic
AACCATGCAGCAAACCTAGG+TGG 0.685477 7.3:+87786404 MS.gene79601:CDS
AATTTGCTGAGAAAGTTGGG+TGG 0.726025 7.3:+87786837 MS.gene79601:CDS
GTGGTTCTTCAGGTTCACGG+CGG 0.747111 7.3:-87786532 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACAATGAGATTAATGA+TGG + chr7.3:87786986-87787005 MS.gene79601:CDS 20.0%
! AATCATTATCAGAATGAAAG+TGG + chr7.3:87787082-87787101 MS.gene79601:CDS 25.0%
!! TTTGAAAAAGGTGAGATTTT+TGG - chr7.3:87786281-87786300 None:intergenic 25.0%
!!! AAAATCTCACCTTTTTCAAA+TGG + chr7.3:87786281-87786300 MS.gene79601:CDS 25.0%
ATATTCAATGACATGAGTTG+TGG - chr7.3:87786567-87786586 None:intergenic 30.0%
GTTATTGATGTTGTTGATGT+TGG - chr7.3:87786158-87786177 None:intergenic 30.0%
TGTTGTAGAGGTTGTTAATA+TGG - chr7.3:87786186-87786205 None:intergenic 30.0%
TTGAGAACACCATTTGAAAA+AGG - chr7.3:87786293-87786312 None:intergenic 30.0%
TTGTTCTGGTGATTTAGTTA+AGG - chr7.3:87786210-87786229 None:intergenic 30.0%
TTTAGTTAAGGTTGTTGTAG+AGG - chr7.3:87786198-87786217 None:intergenic 30.0%
!! TGAAATTTGCTGAGAAAGTT+GGG + chr7.3:87786834-87786853 MS.gene79601:CDS 30.0%
!!! GTTTTTGAGACATTCTTTGT+AGG - chr7.3:87786387-87786406 None:intergenic 30.0%
ACATTCTTTGTAGGTTATGG+TGG - chr7.3:87786378-87786397 None:intergenic 35.0%
AGAGTGAGAATTCATCAACA+TGG - chr7.3:87786756-87786775 None:intergenic 35.0%
ATCGTAGTGTTCTTAAGGTT+TGG + chr7.3:87786918-87786937 MS.gene79601:CDS 35.0%
ATTGATGTTGTTGATGTTGG+TGG - chr7.3:87786155-87786174 None:intergenic 35.0%
CACAAGAATGTTGAGATTCA+TGG + chr7.3:87787049-87787068 MS.gene79601:CDS 35.0%
CATTCTTTGTAGGTTATGGT+GGG - chr7.3:87786377-87786396 None:intergenic 35.0%
GAGAATTCATCAACATGGTT+TGG - chr7.3:87786751-87786770 None:intergenic 35.0%
GAGACATTCTTTGTAGGTTA+TGG - chr7.3:87786381-87786400 None:intergenic 35.0%
GTAGAGGTTGTTAATATGGT+TGG - chr7.3:87786182-87786201 None:intergenic 35.0%
TGTTCTTCATCTTCAACAAG+AGG - chr7.3:87787031-87787050 None:intergenic 35.0%
TGTTGATCGTAGTGTTCTTA+AGG + chr7.3:87786913-87786932 MS.gene79601:CDS 35.0%
! CATGAGTTTTGCAATGAGAT+TGG + chr7.3:87786890-87786909 MS.gene79601:CDS 35.0%
! TCAGTTTCATGTTGTTGTTC+TGG - chr7.3:87786224-87786243 None:intergenic 35.0%
!! ACAATTCTAGAAAGCGTTTC+AGG + chr7.3:87786777-87786796 MS.gene79601:CDS 35.0%
!! ACATTTTAAGGATGTTGGGT+CGG - chr7.3:87786483-87786502 None:intergenic 35.0%
!! CAGCACATTTTAAGGATGTT+GGG - chr7.3:87786487-87786506 None:intergenic 35.0%
!! CTGAAATTTGCTGAGAAAGT+TGG + chr7.3:87786833-87786852 MS.gene79601:CDS 35.0%
!! TTCATCAACATGGTTTGGTT+TGG - chr7.3:87786746-87786765 None:intergenic 35.0%
!!! ATTTTTGGTGTTGTTGAGGT+TGG - chr7.3:87786266-87786285 None:intergenic 35.0%
!!! TGAGATTTTTGGTGTTGTTG+AGG - chr7.3:87786270-87786289 None:intergenic 35.0%
!!! TTTTTGGTGTTGTTGAGGTT+GGG - chr7.3:87786265-87786284 None:intergenic 35.0%
AAAAACCATGCAGCAAACCT+AGG + chr7.3:87786401-87786420 MS.gene79601:CDS 40.0%
CAGAATGAAAGTGGAGTTGT+TGG + chr7.3:87787091-87787110 MS.gene79601:CDS 40.0%
GAATTCACCACAACCATCTA+GGG - chr7.3:87786435-87786454 None:intergenic 40.0%
TGAATTCACCACAACCATCT+AGG - chr7.3:87786436-87786455 None:intergenic 40.0%
TTCAATGACATGAGTTGTGG+TGG - chr7.3:87786564-87786583 None:intergenic 40.0%
! TGAGGTTGGGAATTTTGTTG+TGG - chr7.3:87786252-87786271 None:intergenic 40.0%
!! AATTTGCTGAGAAAGTTGGG+TGG + chr7.3:87786837-87786856 MS.gene79601:CDS 40.0%
!! GAGGTTGGGAATTTTGTTGT+GGG - chr7.3:87786251-87786270 None:intergenic 40.0%
!! GCAGCACATTTTAAGGATGT+TGG - chr7.3:87786488-87786507 None:intergenic 40.0%
!! TCCTTAAAATGTGCTGCTTG+TGG + chr7.3:87786491-87786510 MS.gene79601:CDS 40.0%
GGAGTAACTGTTCGTGCTAA+TGG + chr7.3:87787112-87787131 MS.gene79601:CDS 45.0%
TTTAAGGATGTTGGGTCGGT+TGG - chr7.3:87786479-87786498 None:intergenic 45.0%
! ACATGAGTTGTGGTGGAAAG+TGG - chr7.3:87786557-87786576 None:intergenic 45.0%
! AGAGAGCAAGAAGCATGTGA+GGG - chr7.3:87786694-87786713 None:intergenic 45.0%
! GATGTTGTTGATGTTGGTGG+TGG - chr7.3:87786152-87786171 None:intergenic 45.0%
! GCCACAAGCAGCACATTTTA+AGG - chr7.3:87786495-87786514 None:intergenic 45.0%
!! TATGGTGGGTTGATGGTTGT+TGG - chr7.3:87786363-87786382 None:intergenic 45.0%
!! TGTAGGTTATGGTGGGTTGA+TGG - chr7.3:87786370-87786389 None:intergenic 45.0%
!! TTTGGAGCTGCAACGTTTTC+CGG - chr7.3:87786728-87786747 None:intergenic 45.0%
AACCATGCAGCAAACCTAGG+TGG + chr7.3:87786404-87786423 MS.gene79601:CDS 50.0%
GGGTAGTAAGAGGAGGAGAT+CGG - chr7.3:87786665-87786684 None:intergenic 50.0%
GTGGAAAGTGGTGGTTCTTC+AGG - chr7.3:87786545-87786564 None:intergenic 50.0%
TAGTAAGAGGAGGAGATCGG+TGG - chr7.3:87786662-87786681 None:intergenic 50.0%
TGTTGTGGTGGTTGAAGTGG+TGG - chr7.3:87786337-87786356 None:intergenic 50.0%
! AGCTGCAACGTTTTCCGGTA+AGG - chr7.3:87786723-87786742 None:intergenic 50.0%
! GAGAGAGCAAGAAGCATGTG+AGG - chr7.3:87786695-87786714 None:intergenic 50.0%
! GAGAGCAAGAAGCATGTGAG+GGG - chr7.3:87786693-87786712 None:intergenic 50.0%
! GTGGTGGTGAGGAGGAATTT+GGG - chr7.3:87786643-87786662 None:intergenic 50.0%
! GTGGTGGTTCTTCAGGTTCA+CGG - chr7.3:87786538-87786557 None:intergenic 50.0%
! TGAGTTGTGGTGGAAAGTGG+TGG - chr7.3:87786554-87786573 None:intergenic 50.0%
! TGCAACGTTTTCCGGTAAGG+CGG - chr7.3:87786720-87786739 None:intergenic 50.0%
!! GATGGTTGTTGGTGGTGTTG+TGG - chr7.3:87786352-87786371 None:intergenic 50.0%
!! GTGGTGGAAGTGGTTGATGA+CGG - chr7.3:87786601-87786620 None:intergenic 50.0%
!! GTGGTGTTGGTGTTGGGTTT+GGG - chr7.3:87786133-87786152 None:intergenic 50.0%
!! GTTGATGTTGGTGGTGGTGT+TGG - chr7.3:87786146-87786165 None:intergenic 50.0%
!! TGGTGTTGGTGTTGGGTTTG+GGG - chr7.3:87786132-87786151 None:intergenic 50.0%
!! TGGTGTTGTGGTGGTTGAAG+TGG - chr7.3:87786340-87786359 None:intergenic 50.0%
!! TTGGTGGTGGTGTTGGTGTT+GGG - chr7.3:87786139-87786158 None:intergenic 50.0%
ATTTGGGCTCCGGTGGGAAA+AGG - chr7.3:87786627-87786646 None:intergenic 55.0%
CTAGGTGGTCATGCCCTAGA+TGG + chr7.3:87786419-87786438 MS.gene79601:CDS 55.0%
GGTCATGCCCTAGATGGTTG+TGG + chr7.3:87786425-87786444 MS.gene79601:CDS 55.0%
GTGAGGAGGAATTTGGGCTC+CGG - chr7.3:87786637-87786656 None:intergenic 55.0%
GTTCACGGCGGTGGAAGTTA+CGG - chr7.3:87786523-87786542 None:intergenic 55.0%
TAAGAGGAGGAGATCGGTGG+TGG - chr7.3:87786659-87786678 None:intergenic 55.0%
TGTGGTGGTTGAAGTGGTGG+TGG - chr7.3:87786334-87786353 None:intergenic 55.0%
TTTGGGCTCCGGTGGGAAAA+GGG - chr7.3:87786626-87786645 None:intergenic 55.0%
! AACGTTTTCCGGTAAGGCGG+CGG - chr7.3:87786717-87786736 None:intergenic 55.0%
! AGCAAGAAGCATGTGAGGGG+CGG - chr7.3:87786690-87786709 None:intergenic 55.0%
! CATCTAGGGCATGACCACCT+AGG - chr7.3:87786421-87786440 None:intergenic 55.0%
! GGTGGTGGTGAGGAGGAATT+TGG - chr7.3:87786644-87786663 None:intergenic 55.0%
! GTGGTTCTTCAGGTTCACGG+CGG - chr7.3:87786535-87786554 None:intergenic 55.0%
!! AGTGGTTGATGACGGTGGTG+AGG - chr7.3:87786593-87786612 None:intergenic 55.0%
!! GAAAAGGGTGGTGGTGGAAG+TGG - chr7.3:87786611-87786630 None:intergenic 55.0%
!! GACCACCTAGGTTTGCTGCA+TGG - chr7.3:87786409-87786428 None:intergenic 55.0%
!! GGTGGGTTGATGGTTGTTGG+TGG - chr7.3:87786360-87786379 None:intergenic 55.0%
!! GGTGGTGTTGGTGTTGGGTT+TGG - chr7.3:87786134-87786153 None:intergenic 55.0%
!! GGTTGTTGGTGGTGTTGTGG+TGG - chr7.3:87786349-87786368 None:intergenic 55.0%
!! GTGGAAGTGGTTGATGACGG+TGG - chr7.3:87786598-87786617 None:intergenic 55.0%
!! GTTGGTGGTGGTGTTGGTGT+TGG - chr7.3:87786140-87786159 None:intergenic 55.0%
AGGAGGAATTTGGGCTCCGG+TGG - chr7.3:87786634-87786653 None:intergenic 60.0%
GGAGGAATTTGGGCTCCGGT+GGG - chr7.3:87786633-87786652 None:intergenic 60.0%
! AAGAAGCATGTGAGGGGCGG+AGG - chr7.3:87786687-87786706 None:intergenic 60.0%
! AGAAGCATGTGAGGGGCGGA+GGG - chr7.3:87786686-87786705 None:intergenic 60.0%
! CACCACCACCCTTTTCCCAC+CGG + chr7.3:87786615-87786634 MS.gene79601:CDS 60.0%
! GTTCTTCAGGTTCACGGCGG+TGG - chr7.3:87786532-87786551 None:intergenic 60.0%
!! GGGTCGGTTGGTGTTGCTGT+GGG - chr7.3:87786467-87786486 None:intergenic 60.0%
!! GGTGGTTGAAGTGGTGGTGG+TGG - chr7.3:87786331-87786350 None:intergenic 60.0%
!! GGTTGAAGTGGTGGTGGTGG+TGG - chr7.3:87786328-87786347 None:intergenic 60.0%
!! TGAAGTGGTGGTGGTGGTGG+TGG - chr7.3:87786325-87786344 None:intergenic 60.0%
!! TGGGTCGGTTGGTGTTGCTG+TGG - chr7.3:87786468-87786487 None:intergenic 60.0%
AGGGGCGGAGGGGTAGTAAG+AGG - chr7.3:87786675-87786694 None:intergenic 65.0%
CACGGCGGTGGAAGTTACGG+TGG - chr7.3:87786520-87786539 None:intergenic 65.0%
CTCCGGTGGGAAAAGGGTGG+TGG - chr7.3:87786620-87786639 None:intergenic 65.0%
GAAGCATGTGAGGGGCGGAG+GGG - chr7.3:87786685-87786704 None:intergenic 65.0%
GGCGGAGGGGTAGTAAGAGG+AGG - chr7.3:87786672-87786691 None:intergenic 65.0%
TGCTCTCTCCGCCGCCTTAC+CGG + chr7.3:87786706-87786725 MS.gene79601:CDS 65.0%
! CGGTGGGAAAAGGGTGGTGG+TGG - chr7.3:87786617-87786636 None:intergenic 65.0%
! GGAGATCGGTGGTGGTGAGG+AGG - chr7.3:87786651-87786670 None:intergenic 65.0%
! GGAGGAGATCGGTGGTGGTG+AGG - chr7.3:87786654-87786673 None:intergenic 65.0%
!! AGTGGTGGTGGTGGTGGTGG+TGG - chr7.3:87786322-87786341 None:intergenic 65.0%
GGGCTCCGGTGGGAAAAGGG+TGG - chr7.3:87786623-87786642 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 87786119 87787153 87786119 ID=MS.gene79601
chr7.3 mRNA 87786119 87787153 87786119 ID=MS.gene79601.t1;Parent=MS.gene79601
chr7.3 exon 87786119 87787153 87786119 ID=MS.gene79601.t1.exon1;Parent=MS.gene79601.t1
chr7.3 CDS 87786119 87787153 87786119 ID=cds.MS.gene79601.t1;Parent=MS.gene79601.t1
Gene Sequence

>MS.gene79601

ATGGACATAACCCCAAACCCAACACCAACACCACCACCAACATCAACAACATCAATAACACCAACCATATTAACAACCTCTACAACAACCTTAACTAAATCACCAGAACAACAACATGAAACTGAAACACCCACAACAAAATTCCCAACCTCAACAACACCAAAAATCTCACCTTTTTCAAATGGTGTTCTCAAACGTTTCCACCACCACCACCACCACCACTTCAACCACCACAACACCACCAACAACCATCAACCCACCATAACCTACAAAGAATGTCTCAAAAACCATGCAGCAAACCTAGGTGGTCATGCCCTAGATGGTTGTGGTGAATTCATGACATCTCCCACAGCAACACCAACCGACCCAACATCCTTAAAATGTGCTGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGAACCTGAAGAACCACCACTTTCCACCACAACTCATGTCATTGAATATCAACCTCACCACCGTCATCAACCACTTCCACCACCACCCTTTTCCCACCGGAGCCCAAATTCCTCCTCACCACCACCGATCTCCTCCTCTTACTACCCCTCCGCCCCTCACATGCTTCTTGCTCTCTCCGCCGCCTTACCGGAAAACGTTGCAGCTCCAAACCAAACCATGTTGATGAATTCTCACTCTAACAATTCTAGAAAGCGTTTCAGGACAAAGTTTACACAAGATCAGAAAGATAAGATGCTGAAATTTGCTGAGAAAGTTGGGTGGAAGATGCAGAAAAAAGATGATGAATTTGTTCATGAGTTTTGCAATGAGATTGGTGTTGATCGTAGTGTTCTTAAGGTTTGGATGCATAACAACAAGAACACTTTAGCTAAACGAGAAAATCTTAACAATAACAATGAGATTAATGATGGTGTTAAGAGTTTTCAGCTACCTCTTGTTGAAGATGAAGAACACAAGAATGTTGAGATTCATGGTCTTAATCACAATCATTATCAGAATGAAAGTGGAGTTGTTGGAGTAACTGTTCGTGCTAATGGTTCATCATCTTCTTCTTAA
Protein sequence

>MS.gene79601.t1

MDITPNPTPTPPPTSTTSITPTILTTSTTTLTKSPEQQHETETPTTKFPTSTTPKISPFSNGVLKRFHHHHHHHFNHHNTTNNHQPTITYKECLKNHAANLGGHALDGCGEFMTSPTATPTDPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSHRSPNSSSPPPISSSYYPSAPHMLLALSAALPENVAAPNQTMLMNSHSNNSRKRFRTKFTQDQKDKMLKFAEKVGWKMQKKDDEFVHEFCNEIGVDRSVLKVWMHNNKNTLAKRENLNNNNEINDGVKSFQLPLVEDEEHKNVEIHGLNHNHYQNESGVVGVTVRANGSSSSS