Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79945.t1 | XP_013455381.1 | 89.3 | 281 | 22 | 2 | 1 | 280 | 1 | 274 | 1.10E-128 | 469.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79945.t1 | A0A072UIE0 | 89.3 | 281 | 22 | 2 | 1 | 280 | 1 | 274 | 7.6e-129 | 469.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene79945 | 0.808522 | 2.97E-50 | -1.69E-46 |
| MS.gene050812 | MS.gene79945 | 0.845119 | 4.95E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene79945 | 0.800665 | 1.30E-48 | -1.69E-46 |
| MS.gene052310 | MS.gene79945 | 0.830941 | 2.21E-55 | -1.69E-46 |
| MS.gene053107 | MS.gene79945 | 0.808328 | 3.27E-50 | -1.69E-46 |
| MS.gene055605 | MS.gene79945 | 0.812989 | 3.21E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene79945 | 0.815712 | 8.03E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene79945 | 0.80718 | 5.73E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene79945 | 0.817124 | 3.88E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene79945 | 0.816789 | 4.61E-52 | -1.69E-46 |
| MS.gene05959 | MS.gene79945 | 0.80248 | 5.50E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene79945 | 0.820569 | 6.40E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene79945 | 0.813207 | 2.88E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79945.t1 | MTR_4g036465 | 89.324 | 281 | 22 | 2 | 1 | 280 | 1 | 274 | 3.13e-171 | 474 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79945.t1 | AT4G25170 | 37.069 | 232 | 118 | 6 | 66 | 277 | 118 | 341 | 3.66e-37 | 135 |
| MS.gene79945.t1 | AT4G25170 | 34.818 | 247 | 118 | 7 | 66 | 277 | 118 | 356 | 3.04e-33 | 124 |
| MS.gene79945.t1 | AT5G61490 | 37.500 | 208 | 102 | 3 | 71 | 277 | 75 | 255 | 3.01e-30 | 114 |
Find 57 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGTTTAAAACAGAAAA+AGG | 0.227940 | 4.3:-63812938 | None:intergenic |
| GCCAGTAGTAATAGTATTAT+TGG | 0.258781 | 4.3:-63812975 | None:intergenic |
| CAGCATAAGTGCAGGGTGTT+AGG | 0.262984 | 4.3:+63815041 | MS.gene79945:intron |
| CTTCACGTGCCGAGCTCCTT+AGG | 0.274000 | 4.3:+63815069 | MS.gene79945:CDS |
| AAAACATTTGTTGTATTGTC+AGG | 0.320543 | 4.3:-63816033 | None:intergenic |
| TTCTTTCATGCTTTCGATCA+TGG | 0.323980 | 4.3:+63816203 | MS.gene79945:CDS |
| CTCGATTACTTCGATGAGTT+TGG | 0.325783 | 4.3:-63816082 | None:intergenic |
| CCAGTAGTAATAGTATTATT+GGG | 0.338007 | 4.3:-63812974 | None:intergenic |
| TGATAAAGATTTGCGTTTGC+AGG | 0.343518 | 4.3:-63812873 | None:intergenic |
| TATCAACCGATGAAGCTGTT+TGG | 0.376110 | 4.3:+63815607 | MS.gene79945:CDS |
| GGTGTTGCTGCACCCTTCAT+TGG | 0.377511 | 4.3:+63813019 | MS.gene79945:CDS |
| ATCAACCGATGAAGCTGTTT+GGG | 0.379156 | 4.3:+63815608 | MS.gene79945:CDS |
| GCAGACTGATCCCTCTGTTC+AGG | 0.380216 | 4.3:+63815250 | MS.gene79945:CDS |
| TGAGAAGAATAAGAAGATAA+TGG | 0.393458 | 4.3:-63812905 | None:intergenic |
| AATAAGAAGATAATGGAAAA+GGG | 0.394078 | 4.3:-63812898 | None:intergenic |
| GAATAAGAAGATAATGGAAA+AGG | 0.394823 | 4.3:-63812899 | None:intergenic |
| AGCATAAGTGCAGGGTGTTA+GGG | 0.422717 | 4.3:+63815042 | MS.gene79945:intron |
| CCCAATAATACTATTACTAC+TGG | 0.435744 | 4.3:+63812974 | MS.gene79945:CDS |
| AATTATGTTGCGCCTAACTT+TGG | 0.436566 | 4.3:-63816254 | None:intergenic |
| AGGAGCTCGGCACGTGAAGC+AGG | 0.444376 | 4.3:-63815065 | None:intergenic |
| TATTCTCATCTTCAGAAACT+TGG | 0.451065 | 4.3:-63815136 | None:intergenic |
| CCGAAAATGCTACAGGATGA+TGG | 0.461296 | 4.3:+63815194 | MS.gene79945:CDS |
| GGATTATATGGAAACAAAGA+TGG | 0.462920 | 4.3:-63815173 | None:intergenic |
| ATGAAGTTGTTCAGCAACTC+AGG | 0.463056 | 4.3:+63815646 | MS.gene79945:CDS |
| TTCACGTGCCGAGCTCCTTA+GGG | 0.470566 | 4.3:+63815070 | MS.gene79945:CDS |
| GAAATTGAGCTAGGCAGTCT+TGG | 0.472920 | 4.3:+63815113 | MS.gene79945:CDS |
| AGAAGGAGGAGGACCAATGA+AGG | 0.500321 | 4.3:-63813032 | None:intergenic |
| TCCTCCTCCTTCTCAAACTG+AGG | 0.503769 | 4.3:+63813042 | MS.gene79945:CDS |
| ATATAATCCGAAAATGCTAC+AGG | 0.513690 | 4.3:+63815187 | MS.gene79945:CDS |
| AAACATTTGTTGTATTGTCA+GGG | 0.524197 | 4.3:-63816032 | None:intergenic |
| ATGCTCTTTCTTCTCTTCAA+CGG | 0.527672 | 4.3:+63813071 | MS.gene79945:CDS |
| GTGCCGAGCTCCTTAGGGAC+AGG | 0.542730 | 4.3:+63815075 | MS.gene79945:CDS |
| TGTTGAAATACCTGTCCCTA+AGG | 0.548759 | 4.3:-63815085 | None:intergenic |
| CAGCAACACCATCATCATCA+TGG | 0.551950 | 4.3:-63813006 | None:intergenic |
| AGCCTCCCAAACAGCTTCAT+CGG | 0.552589 | 4.3:-63815613 | None:intergenic |
| GGTACATCGTAACCAAAGTT+AGG | 0.556435 | 4.3:+63816242 | MS.gene79945:CDS |
| ACGGTAACAATGAAATTTCG+CGG | 0.567677 | 4.3:+63812830 | None:intergenic |
| ATAAGAAGATAATGGAAAAG+GGG | 0.572203 | 4.3:-63812897 | None:intergenic |
| CTGAAGATGAGAATATAGAC+TGG | 0.575112 | 4.3:+63815144 | MS.gene79945:CDS |
| AACAAACTAGAAATTGAGCT+AGG | 0.577265 | 4.3:+63815104 | MS.gene79945:CDS |
| CAGTAGTAATAGTATTATTG+GGG | 0.581405 | 4.3:-63812973 | None:intergenic |
| TGAAGTTGTTCAGCAACTCA+GGG | 0.586059 | 4.3:+63815647 | MS.gene79945:CDS |
| GATCATGGTCTTGTTGATTG+TGG | 0.588306 | 4.3:+63816218 | MS.gene79945:CDS |
| ATAGACTGCACCTGAACAGA+GGG | 0.590888 | 4.3:-63815260 | None:intergenic |
| ATACCTGTCCCTAAGGAGCT+CGG | 0.592229 | 4.3:-63815078 | None:intergenic |
| TGAACCTCAGTTTGAGAAGG+AGG | 0.594126 | 4.3:-63813046 | None:intergenic |
| CATGGTCTTGTTGATTGTGG+TGG | 0.608098 | 4.3:+63816221 | MS.gene79945:CDS |
| ACCTCAGTTTGAGAAGGAGG+AGG | 0.616992 | 4.3:-63813043 | None:intergenic |
| TCATGAACCTCAGTTTGAGA+AGG | 0.620679 | 4.3:-63813049 | None:intergenic |
| GAAGGAGGAGGACCAATGAA+GGG | 0.630566 | 4.3:-63813031 | None:intergenic |
| TTTGCGTTTGCAGGTTCGTG+CGG | 0.634184 | 4.3:-63812864 | None:intergenic |
| GATGCTATCCATGATGATGA+TGG | 0.636543 | 4.3:+63812998 | MS.gene79945:CDS |
| AACCGATGAAGCTGTTTGGG+AGG | 0.644231 | 4.3:+63815611 | MS.gene79945:CDS |
| CATAGACTGCACCTGAACAG+AGG | 0.657496 | 4.3:-63815261 | None:intergenic |
| AAGTTGTTCAGCAACTCAGG+GGG | 0.698699 | 4.3:+63815649 | MS.gene79945:CDS |
| GAAGTTGTTCAGCAACTCAG+GGG | 0.702778 | 4.3:+63815648 | MS.gene79945:CDS |
| AGTAGTAATAGTATTATTGG+GGG | 0.727901 | 4.3:-63812972 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAATATGAGATTAATAT+AGG | - | chr4.3:63813795-63813814 | None:intergenic | 15.0% |
| !! | AACAATATGAGATTAATATA+GGG | - | chr4.3:63813794-63813813 | None:intergenic | 15.0% |
| !! | AGAGTTAAAAAAAATGATAT+AGG | + | chr4.3:63813819-63813838 | MS.gene79945:intron | 15.0% |
| !! | TTAAAATTCATATAACAGTA+TGG | - | chr4.3:63814335-63814354 | None:intergenic | 15.0% |
| !!! | AAATTTTTTTATCACAATCT+TGG | - | chr4.3:63816115-63816134 | None:intergenic | 15.0% |
| !!! | AATTAAGATTTTGATTATGT+TGG | - | chr4.3:63814525-63814544 | None:intergenic | 15.0% |
| !!! | TGAATTTGATTTTTTGAATT+CGG | + | chr4.3:63814170-63814189 | MS.gene79945:intron | 15.0% |
| !!! | TTATAGATATTTGATAACTA+AGG | + | chr4.3:63815554-63815573 | MS.gene79945:intron | 15.0% |
| !!! | TTTTATTGTTTAAGTGATAT+TGG | + | chr4.3:63813167-63813186 | MS.gene79945:intron | 15.0% |
| !!! | TTTTCGTTTTCTTTAATATT+TGG | + | chr4.3:63815698-63815717 | MS.gene79945:intron | 15.0% |
| !! | AACTAGTAGTAAAAATTTAG+TGG | + | chr4.3:63814786-63814805 | MS.gene79945:intron | 20.0% |
| !! | ATTTGACTGATTAAAAACTT+TGG | + | chr4.3:63813848-63813867 | MS.gene79945:intron | 20.0% |
| !! | TGATACATTCTTATATGTTA+TGG | + | chr4.3:63814592-63814611 | MS.gene79945:intron | 20.0% |
| !!! | AAAGAGTTTAAAACAGAAAA+AGG | - | chr4.3:63812941-63812960 | None:intergenic | 20.0% |
| !!! | AATAAGAAGATAATGGAAAA+GGG | - | chr4.3:63812901-63812920 | None:intergenic | 20.0% |
| !!! | ATACAACAAATGTTTTGATT+TGG | + | chr4.3:63816040-63816059 | MS.gene79945:CDS | 20.0% |
| !!! | ATGTTTTCTCAAATTGTTAT+TGG | + | chr4.3:63814438-63814457 | MS.gene79945:intron | 20.0% |
| !!! | ATTTTCATCTAAAATTTGCT+CGG | + | chr4.3:63814289-63814308 | MS.gene79945:intron | 20.0% |
| !!! | CATAATTATATTGGTAATGA+TGG | + | chr4.3:63813737-63813756 | MS.gene79945:intron | 20.0% |
| !!! | CATACATAAGCTATTTTTAT+AGG | + | chr4.3:63813278-63813297 | MS.gene79945:intron | 20.0% |
| !!! | GATTTTTTTCGAATTATTAG+CGG | - | chr4.3:63813634-63813653 | None:intergenic | 20.0% |
| !!! | GTAGTATTTTGAATTCAATT+TGG | + | chr4.3:63813991-63814010 | MS.gene79945:intron | 20.0% |
| !!! | TATATCTGCATGATTTTATT+CGG | + | chr4.3:63815832-63815851 | MS.gene79945:intron | 20.0% |
| ! | AAAATAAGCTGAAGCTATAT+TGG | + | chr4.3:63813374-63813393 | MS.gene79945:intron | 25.0% |
| ! | AAAGAGATAATTTAACCATG+AGG | + | chr4.3:63815513-63815532 | MS.gene79945:intron | 25.0% |
| ! | AGTAGTAATAGTATTATTGG+GGG | - | chr4.3:63812975-63812994 | None:intergenic | 25.0% |
| ! | ATATAACAATAGCTGCTATT+CGG | - | chr4.3:63815490-63815509 | None:intergenic | 25.0% |
| ! | ATTATAGAATTATGACCTAC+TGG | + | chr4.3:63815923-63815942 | MS.gene79945:intron | 25.0% |
| ! | CAGTAGTAATAGTATTATTG+GGG | - | chr4.3:63812976-63812995 | None:intergenic | 25.0% |
| ! | CCAGTAGTAATAGTATTATT+GGG | - | chr4.3:63812977-63812996 | None:intergenic | 25.0% |
| ! | CTTCAACGGTAAAAATATAT+TGG | + | chr4.3:63813085-63813104 | MS.gene79945:intron | 25.0% |
| ! | GAGTACATAGATTAGATTTA+TGG | + | chr4.3:63815868-63815887 | MS.gene79945:intron | 25.0% |
| ! | TGAATTCAATTTGGCAAATT+TGG | + | chr4.3:63814000-63814019 | MS.gene79945:intron | 25.0% |
| ! | TGAGAAGAATAAGAAGATAA+TGG | - | chr4.3:63812908-63812927 | None:intergenic | 25.0% |
| ! | TGAGATTAATATAGGGTATA+TGG | - | chr4.3:63813787-63813806 | None:intergenic | 25.0% |
| ! | TTCGTGCTTCATAATTATAT+TGG | + | chr4.3:63813728-63813747 | MS.gene79945:intron | 25.0% |
| !! | ATATCTGCATGATTTTATTC+GGG | + | chr4.3:63815833-63815852 | MS.gene79945:intron | 25.0% |
| !! | ATATTGGTAATCATGGTATA+AGG | + | chr4.3:63813183-63813202 | MS.gene79945:intron | 25.0% |
| !! | TAAATTTGATTAGCTGATGT+TGG | + | chr4.3:63813911-63813930 | MS.gene79945:intron | 25.0% |
| !! | TTAAGTGATATTGGTAATCA+TGG | + | chr4.3:63813176-63813195 | MS.gene79945:intron | 25.0% |
| !!! | AAAACATTTGTTGTATTGTC+AGG | - | chr4.3:63816036-63816055 | None:intergenic | 25.0% |
| !!! | AAACATTTGTTGTATTGTCA+GGG | - | chr4.3:63816035-63816054 | None:intergenic | 25.0% |
| !!! | AACAATTTGCTGAAGTTTTT+CGG | + | chr4.3:63815441-63815460 | MS.gene79945:intron | 25.0% |
| !!! | ATAAGAAGATAATGGAAAAG+GGG | - | chr4.3:63812900-63812919 | None:intergenic | 25.0% |
| !!! | CATAAGCTATTTTTATAGGA+AGG | + | chr4.3:63813282-63813301 | MS.gene79945:intron | 25.0% |
| !!! | CTTCTAAAACCCTTATATTA+AGG | + | chr4.3:63813545-63813564 | MS.gene79945:intron | 25.0% |
| !!! | GAATAAGAAGATAATGGAAA+AGG | - | chr4.3:63812902-63812921 | None:intergenic | 25.0% |
| !!! | TGTGTTTCATAGATTTTAAC+TGG | + | chr4.3:63814498-63814517 | MS.gene79945:intron | 25.0% |
| AACAAACTAGAAATTGAGCT+AGG | + | chr4.3:63815104-63815123 | MS.gene79945:CDS | 30.0% | |
| ACAACTGCAACCTTAATATA+AGG | - | chr4.3:63813558-63813577 | None:intergenic | 30.0% | |
| ATATAATCCGAAAATGCTAC+AGG | + | chr4.3:63815187-63815206 | MS.gene79945:CDS | 30.0% | |
| CAACTGCAACCTTAATATAA+GGG | - | chr4.3:63813557-63813576 | None:intergenic | 30.0% | |
| CCCAATAATACTATTACTAC+TGG | + | chr4.3:63812974-63812993 | MS.gene79945:CDS | 30.0% | |
| GCCAGTAGTAATAGTATTAT+TGG | - | chr4.3:63812978-63812997 | None:intergenic | 30.0% | |
| GGATTATATGGAAACAAAGA+TGG | - | chr4.3:63815176-63815195 | None:intergenic | 30.0% | |
| TATTCTCATCTTCAGAAACT+TGG | - | chr4.3:63815139-63815158 | None:intergenic | 30.0% | |
| TTATATTAAGGTTGCAGTTG+TGG | + | chr4.3:63813557-63813576 | MS.gene79945:intron | 30.0% | |
| ! | TATCTGCATGATTTTATTCG+GGG | + | chr4.3:63815834-63815853 | MS.gene79945:intron | 30.0% |
| ! | TGTAGCATTTTCGGATTATA+TGG | - | chr4.3:63815188-63815207 | None:intergenic | 30.0% |
| ! | TTAGCTGATGTTGGAATTTT+AGG | + | chr4.3:63813920-63813939 | MS.gene79945:intron | 30.0% |
| !! | TTATGTCGATAGCTTTGTTA+AGG | + | chr4.3:63815724-63815743 | MS.gene79945:intron | 30.0% |
| !!! | ATTTTTTGAATTCGGATGTG+AGG | + | chr4.3:63814178-63814197 | MS.gene79945:intron | 30.0% |
| AATGACCGTAATGACTAATG+AGG | - | chr4.3:63814841-63814860 | None:intergenic | 35.0% | |
| ATAAATCTCAGCATAAGTGC+AGG | + | chr4.3:63815033-63815052 | MS.gene79945:intron | 35.0% | |
| ATGCTCTTTCTTCTCTTCAA+CGG | + | chr4.3:63813071-63813090 | MS.gene79945:CDS | 35.0% | |
| CATTAGTCATTACGGTCATT+AGG | + | chr4.3:63814841-63814860 | MS.gene79945:intron | 35.0% | |
| CCATACCTCATTAGTCATTA+CGG | + | chr4.3:63814833-63814852 | MS.gene79945:intron | 35.0% | |
| CTGAAGATGAGAATATAGAC+TGG | + | chr4.3:63815144-63815163 | MS.gene79945:CDS | 35.0% | |
| GATCTCTAATTCTGAATTCC+TGG | - | chr4.3:63814734-63814753 | None:intergenic | 35.0% | |
| TAAATCTCAGCATAAGTGCA+GGG | + | chr4.3:63815034-63815053 | MS.gene79945:intron | 35.0% | |
| TAAGTTGTGTGAGACTGTTT+AGG | - | chr4.3:63813465-63813484 | None:intergenic | 35.0% | |
| TGATAAAGATTTGCGTTTGC+AGG | - | chr4.3:63812876-63812895 | None:intergenic | 35.0% | |
| TTCTTTCATGCTTTCGATCA+TGG | + | chr4.3:63816203-63816222 | MS.gene79945:CDS | 35.0% | |
| TTGTGGTTGTTTATGAAGCA+CGG | + | chr4.3:63813574-63813593 | MS.gene79945:intron | 35.0% | |
| TTGTTTATGAAGCACGGATA+CGG | + | chr4.3:63813580-63813599 | MS.gene79945:intron | 35.0% | |
| ! | ATTTGAGATGCACTTCATAC+TGG | + | chr4.3:63815368-63815387 | MS.gene79945:intron | 35.0% |
| ! | TGTGTTTTGTATTCAGTTGC+TGG | + | chr4.3:63814245-63814264 | MS.gene79945:intron | 35.0% |
| !!! | GGTTTTAGAAGTCTCAAAAG+CGG | - | chr4.3:63813536-63813555 | None:intergenic | 35.0% |
| ACAGACACTTAACACTGAAC+AGG | - | chr4.3:63814481-63814500 | None:intergenic | 40.0% | |
| AGCATTTCAGTGCCTAATCA+TGG | + | chr4.3:63814646-63814665 | MS.gene79945:intron | 40.0% | |
| ATCAACCGATGAAGCTGTTT+GGG | + | chr4.3:63815608-63815627 | MS.gene79945:CDS | 40.0% | |
| ATGAAGTTGTTCAGCAACTC+AGG | + | chr4.3:63815646-63815665 | MS.gene79945:CDS | 40.0% | |
| CCGTAATGACTAATGAGGTA+TGG | - | chr4.3:63814836-63814855 | None:intergenic | 40.0% | |
| CTCACACAACTTATGTCAGT+AGG | + | chr4.3:63813472-63813491 | MS.gene79945:intron | 40.0% | |
| CTCGATTACTTCGATGAGTT+TGG | - | chr4.3:63816085-63816104 | None:intergenic | 40.0% | |
| CTGAAATCAGTAAAGCCTCA+TGG | - | chr4.3:63815531-63815550 | None:intergenic | 40.0% | |
| GATGGGCATAAACACTAATC+TGG | + | chr4.3:63815948-63815967 | MS.gene79945:intron | 40.0% | |
| GCACTGAAATGCTTGCAAAA+TGG | - | chr4.3:63814639-63814658 | None:intergenic | 40.0% | |
| TATCAACCGATGAAGCTGTT+TGG | + | chr4.3:63815607-63815626 | MS.gene79945:CDS | 40.0% | |
| TCATGAACCTCAGTTTGAGA+AGG | - | chr4.3:63813052-63813071 | None:intergenic | 40.0% | |
| TCATGGTATAAGGCTCTGTT+TGG | + | chr4.3:63813193-63813212 | MS.gene79945:intron | 40.0% | |
| TGAAGTTGTTCAGCAACTCA+GGG | + | chr4.3:63815647-63815666 | MS.gene79945:CDS | 40.0% | |
| TGTTCAAATTCCGCTATGCA+TGG | - | chr4.3:63815425-63815444 | None:intergenic | 40.0% | |
| TGTTGAAATACCTGTCCCTA+AGG | - | chr4.3:63815088-63815107 | None:intergenic | 40.0% | |
| ! | AAGTTTGCTCACTGCAATGT+TGG | + | chr4.3:63814136-63814155 | MS.gene79945:intron | 40.0% |
| ! | AATTATGACCTACTGGCTGA+TGG | + | chr4.3:63815930-63815949 | MS.gene79945:intron | 40.0% |
| ! | ATTATGACCTACTGGCTGAT+GGG | + | chr4.3:63815931-63815950 | MS.gene79945:intron | 40.0% |
| ! | CATGTGGTGCATAAGACTTT+TGG | - | chr4.3:63814698-63814717 | None:intergenic | 40.0% |
| ! | CCATCATCCTGTAGCATTTT+CGG | - | chr4.3:63815197-63815216 | None:intergenic | 40.0% |
| ! | GATGCTATCCATGATGATGA+TGG | + | chr4.3:63812998-63813017 | MS.gene79945:CDS | 40.0% |
| !! | GATCATGGTCTTGTTGATTG+TGG | + | chr4.3:63816218-63816237 | MS.gene79945:CDS | 40.0% |
| !! | TCGATAGCTTTGTTAAGGTG+TGG | + | chr4.3:63815729-63815748 | MS.gene79945:intron | 40.0% |
| AACTCAACGACGCCATGATT+AGG | - | chr4.3:63814661-63814680 | None:intergenic | 45.0% | |
| AACTGTGGGTCTGTTTGGAT+TGG | - | chr4.3:63813512-63813531 | None:intergenic | 45.0% | |
| AAGTTGTTCAGCAACTCAGG+GGG | + | chr4.3:63815649-63815668 | MS.gene79945:CDS | 45.0% | |
| ACATGATGAGCTTAGCTTCC+AGG | + | chr4.3:63814713-63814732 | MS.gene79945:intron | 45.0% | |
| AGCTATAACGCCATGCATAG+CGG | + | chr4.3:63815412-63815431 | MS.gene79945:intron | 45.0% | |
| ATAGACTGCACCTGAACAGA+GGG | - | chr4.3:63815263-63815282 | None:intergenic | 45.0% | |
| CAACACAAGACTGACACTTG+TGG | + | chr4.3:63814400-63814419 | MS.gene79945:intron | 45.0% | |
| CAGCAACACCATCATCATCA+TGG | - | chr4.3:63813009-63813028 | None:intergenic | 45.0% | |
| CCGAAAATGCTACAGGATGA+TGG | + | chr4.3:63815194-63815213 | MS.gene79945:CDS | 45.0% | |
| GAAATTGAGCTAGGCAGTCT+TGG | + | chr4.3:63815113-63815132 | MS.gene79945:CDS | 45.0% | |
| GAAGTTGTTCAGCAACTCAG+GGG | + | chr4.3:63815648-63815667 | MS.gene79945:CDS | 45.0% | |
| GCTCTCTGAATTAGTGGTGA+GGG | + | chr4.3:63815763-63815782 | MS.gene79945:intron | 45.0% | |
| TATGAAGCACGAACGCTCTT+CGG | - | chr4.3:63813721-63813740 | None:intergenic | 45.0% | |
| TCTCACGCTCTCTGAATTAG+TGG | + | chr4.3:63815757-63815776 | MS.gene79945:intron | 45.0% | |
| TGAACCTCAGTTTGAGAAGG+AGG | - | chr4.3:63813049-63813068 | None:intergenic | 45.0% | |
| TGGAAGCTAAGCTCATCATG+TGG | - | chr4.3:63814714-63814733 | None:intergenic | 45.0% | |
| ! | AGCATAAGTGCAGGGTGTTA+GGG | + | chr4.3:63815042-63815061 | MS.gene79945:intron | 45.0% |
| ! | CACAAGTGTCAGTCTTGTGT+TGG | - | chr4.3:63814402-63814421 | None:intergenic | 45.0% |
| ! | CTGAAGTGTCAGAGCTACAT+AGG | - | chr4.3:63814358-63814377 | None:intergenic | 45.0% |
| !! | CATGGTCTTGTTGATTGTGG+TGG | + | chr4.3:63816221-63816240 | MS.gene79945:CDS | 45.0% |
| !! | CTATGTAGCTCTGACACTTC+AGG | + | chr4.3:63814356-63814375 | MS.gene79945:intron | 45.0% |
| AACCGATGAAGCTGTTTGGG+AGG | + | chr4.3:63815611-63815630 | MS.gene79945:CDS | 50.0% | |
| ACCTCAGTTTGAGAAGGAGG+AGG | - | chr4.3:63813046-63813065 | None:intergenic | 50.0% | |
| AGAAGGAGGAGGACCAATGA+AGG | - | chr4.3:63813035-63813054 | None:intergenic | 50.0% | |
| AGCCTCCCAAACAGCTTCAT+CGG | - | chr4.3:63815616-63815635 | None:intergenic | 50.0% | |
| AGTCTCAAAAGCGGCAACTG+TGG | - | chr4.3:63813527-63813546 | None:intergenic | 50.0% | |
| ATACCTGTCCCTAAGGAGCT+CGG | - | chr4.3:63815081-63815100 | None:intergenic | 50.0% | |
| CATAGACTGCACCTGAACAG+AGG | - | chr4.3:63815264-63815283 | None:intergenic | 50.0% | |
| CGCTCTCTGAATTAGTGGTG+AGG | + | chr4.3:63815762-63815781 | MS.gene79945:intron | 50.0% | |
| CTCTGTTCAGGTGCAGTCTA+TGG | + | chr4.3:63815262-63815281 | MS.gene79945:intron | 50.0% | |
| GAAGGAGGAGGACCAATGAA+GGG | - | chr4.3:63813034-63813053 | None:intergenic | 50.0% | |
| GTCTCAAAAGCGGCAACTGT+GGG | - | chr4.3:63813526-63813545 | None:intergenic | 50.0% | |
| GTTTATGCCCATCAGCCAGT+AGG | - | chr4.3:63815941-63815960 | None:intergenic | 50.0% | |
| TCCTCCTCCTTCTCAAACTG+AGG | + | chr4.3:63813042-63813061 | MS.gene79945:CDS | 50.0% | |
| TTTGCGTTTGCAGGTTCGTG+CGG | - | chr4.3:63812867-63812886 | None:intergenic | 50.0% | |
| ! | CAGCATAAGTGCAGGGTGTT+AGG | + | chr4.3:63815041-63815060 | MS.gene79945:intron | 50.0% |
| CTCAGGGGGTCAATATCTGC+AGG | + | chr4.3:63815663-63815682 | MS.gene79945:CDS | 55.0% | |
| GCACGAACGCTCTTCGGATT+AGG | - | chr4.3:63813715-63813734 | None:intergenic | 55.0% | |
| GCAGACTGATCCCTCTGTTC+AGG | + | chr4.3:63815250-63815269 | MS.gene79945:CDS | 55.0% | |
| GGGGGTCAATATCTGCAGGT+TGG | + | chr4.3:63815667-63815686 | MS.gene79945:intron | 55.0% | |
| TTCACGTGCCGAGCTCCTTA+GGG | + | chr4.3:63815070-63815089 | MS.gene79945:CDS | 55.0% | |
| ! | TCTTCGGATTAGGCGTGTCC+CGG | - | chr4.3:63813705-63813724 | None:intergenic | 55.0% |
| !! | GGTGTTGCTGCACCCTTCAT+TGG | + | chr4.3:63813019-63813038 | MS.gene79945:CDS | 55.0% |
| CTTCACGTGCCGAGCTCCTT+AGG | + | chr4.3:63815069-63815088 | MS.gene79945:CDS | 60.0% | |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr4.3:63813699-63813718 | None:intergenic | 60.0% | |
| GCACGGATACGGACACGACA+CGG | + | chr4.3:63813591-63813610 | MS.gene79945:intron | 60.0% | |
| GCGGCAACTGTGGGTCTGTT+TGG | - | chr4.3:63813517-63813536 | None:intergenic | 60.0% | |
| GTGTCGGACACGACGAGACA+CGG | - | chr4.3:63813683-63813702 | None:intergenic | 60.0% | |
| TGTCTCGTCGTGTCCGACAC+CGG | + | chr4.3:63813683-63813702 | MS.gene79945:intron | 60.0% | |
| AGGAGCTCGGCACGTGAAGC+AGG | - | chr4.3:63815068-63815087 | None:intergenic | 65.0% | |
| GTCTCGTCGTGTCCGACACC+GGG | + | chr4.3:63813684-63813703 | MS.gene79945:intron | 65.0% | |
| GTGCCGAGCTCCTTAGGGAC+AGG | + | chr4.3:63815075-63815094 | MS.gene79945:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 63812839 | 63816263 | 63812839 | ID=MS.gene79945 |
| chr4.3 | mRNA | 63812839 | 63816263 | 63812839 | ID=MS.gene79945.t1;Parent=MS.gene79945 |
| chr4.3 | exon | 63812839 | 63813092 | 63812839 | ID=MS.gene79945.t1.exon1;Parent=MS.gene79945.t1 |
| chr4.3 | CDS | 63812839 | 63813092 | 63812839 | ID=cds.MS.gene79945.t1;Parent=MS.gene79945.t1 |
| chr4.3 | exon | 63815055 | 63815271 | 63815055 | ID=MS.gene79945.t1.exon2;Parent=MS.gene79945.t1 |
| chr4.3 | CDS | 63815055 | 63815271 | 63815055 | ID=cds.MS.gene79945.t1;Parent=MS.gene79945.t1 |
| chr4.3 | exon | 63815591 | 63815684 | 63815591 | ID=MS.gene79945.t1.exon3;Parent=MS.gene79945.t1 |
| chr4.3 | CDS | 63815591 | 63815684 | 63815591 | ID=cds.MS.gene79945.t1;Parent=MS.gene79945.t1 |
| chr4.3 | exon | 63815986 | 63816263 | 63815986 | ID=MS.gene79945.t1.exon4;Parent=MS.gene79945.t1 |
| chr4.3 | CDS | 63815986 | 63816263 | 63815986 | ID=cds.MS.gene79945.t1;Parent=MS.gene79945.t1 |
| Gene Sequence |
| Protein sequence |
