AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053107


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053107.t1 MTR_6g004030 91.776 304 12 4 1 294 1 301 0.0 544
MS.gene053107.t1 MTR_6g004030 89.474 247 13 4 1 237 1 244 2.30e-152 426
MS.gene053107.t1 MTR_8g046180 43.750 192 108 0 103 294 127 318 3.58e-57 186
MS.gene053107.t1 MTR_8g046180 44.444 162 90 0 101 262 125 286 1.59e-46 158
MS.gene053107.t1 MTR_8g046180 42.708 96 55 0 101 196 125 220 5.55e-22 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053107.t1 AT5G08400 74.615 260 65 1 36 294 41 300 1.18e-152 429
MS.gene053107.t1 AT5G08400 66.212 293 65 2 36 294 41 333 1.18e-145 412
MS.gene053107.t1 AT4G29400 42.784 194 111 0 101 294 109 302 2.22e-59 192

Find 68 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTGAGTTCCAGGATAAT+TGG 0.245524 6.2:+62075 MS.gene053107:CDS
ATCCACTTGATTCATATATC+TGG 0.260074 6.2:+60629 MS.gene053107:CDS
ATTATCCTTCAAGTTGGATT+TGG 0.271702 6.2:-59746 None:intergenic
GAAATTGATAAATCGATAAA+AGG 0.289722 6.2:+59775 MS.gene053107:CDS
GACTTTCGTCGCTCCAAAAC+TGG 0.293871 6.2:+60225 MS.gene053107:CDS
TATATCTGGTTTGAATTGTA+TGG 0.296023 6.2:+60643 MS.gene053107:CDS
GTGGTCGGTCCATGGGTGAT+TGG 0.323410 6.2:+63504 MS.gene053107:CDS
GATCGCGACGTTAATCTAAT+TGG 0.338744 6.2:+60676 MS.gene053107:CDS
CTACAATTCTTCAAACTTGC+AGG 0.343980 6.2:+60829 MS.gene053107:CDS
CTGCAAGTTTGAAGAATTGT+AGG 0.357092 6.2:-60828 None:intergenic
TCTCTGAATGGCAGATATCT+TGG 0.380849 6.2:+63461 MS.gene053107:intron
TGTTGAGTTCCAGGATAATT+GGG 0.382704 6.2:+62076 MS.gene053107:CDS
GGCAACAACAGATCCAGTTT+TGG 0.385284 6.2:-60238 None:intergenic
TATCAGTGATGTTGAGTTCC+AGG 0.390177 6.2:+62067 MS.gene053107:CDS
GCCTTCACAATTACCCTGCT+TGG 0.401282 6.2:+59869 MS.gene053107:CDS
CTCGTTCCTTCATGAGTTGA+GGG 0.406081 6.2:-60082 None:intergenic
TAAATCCAAATCCAACTTGA+AGG 0.414755 6.2:+59741 MS.gene053107:CDS
ACTCTGAGCTTAAATTAGTA+AGG 0.421880 6.2:-63325 None:intergenic
GGGATGACAAACCCTGAGTA+TGG 0.437201 6.2:+63533 MS.gene053107:CDS
TGGTCGGTCCATGGGTGATT+GGG 0.440212 6.2:+63505 MS.gene053107:CDS
CCTTCACAATTACCCTGCTT+GGG 0.441292 6.2:+59870 MS.gene053107:CDS
CCTCTCTATGACTCAGATAA+GGG 0.452501 6.2:+62014 MS.gene053107:CDS
AACACAGAACGAGTAGTAGA+AGG 0.460648 6.2:-59703 None:intergenic
ATCATCATTATCCTTCAAGT+TGG 0.460940 6.2:-59752 None:intergenic
ACTCAACATCACTGATATCA+TGG 0.462409 6.2:-62061 None:intergenic
GGTATGTCATGGGTCGACTT+GGG 0.471237 6.2:+60804 MS.gene053107:CDS
TCCTCTCTATGACTCAGATA+AGG 0.474063 6.2:+62013 MS.gene053107:CDS
ATACTCTCTAAAGGTGACTT+TGG 0.475046 6.2:-60262 None:intergenic
TGGTATGTCATGGGTCGACT+TGG 0.479500 6.2:+60803 MS.gene053107:CDS
GATAAATCGATAAAAGGATC+AGG 0.491583 6.2:+59781 MS.gene053107:CDS
AATACTTACTTAGCCCAAGC+AGG 0.499987 6.2:-59883 None:intergenic
TCCATGGGTGATTGGGAAGA+GGG 0.507364 6.2:+63512 MS.gene053107:CDS
AGATTAACGTCGCGATCAGA+TGG 0.511089 6.2:-60670 None:intergenic
GTCCATGGGTGATTGGGAAG+AGG 0.512718 6.2:+63511 MS.gene053107:CDS
TGATAATACATACTCTCTAA+AGG 0.512928 6.2:-60271 None:intergenic
ACTGAACTACGTGCTGTACT+TGG 0.518691 6.2:+60044 MS.gene053107:CDS
AAGTACTTGTAACCATACTC+AGG 0.526116 6.2:-63545 None:intergenic
CTCTCTAAAGGTGACTTTGG+AGG 0.530558 6.2:-60259 None:intergenic
ACTCGTTCCTTCATGAGTTG+AGG 0.531698 6.2:-60083 None:intergenic
TATTCAAGCATGGTATGTCA+TGG 0.547139 6.2:+60793 MS.gene053107:CDS
GCAGATGTCAAATTCGTCAA+TGG 0.550855 6.2:+61983 MS.gene053107:intron
CCCCTCTTCCCAATCACCCA+TGG 0.562425 6.2:-63513 None:intergenic
GTATGTCATGGGTCGACTTG+GGG 0.564827 6.2:+60805 MS.gene053107:CDS
TTATATAGGTTATTCAAGCA+TGG 0.565976 6.2:+60783 MS.gene053107:intron
AACCAGATATATGAATCAAG+TGG 0.567513 6.2:-60631 None:intergenic
CCCAAGCAGGGTAATTGTGA+AGG 0.584375 6.2:-59870 None:intergenic
GCACCGAGGATGATGACTGT+GGG 0.587506 6.2:-59669 None:intergenic
GGATCAGGAACCACTGCTAG+AGG 0.592027 6.2:+59796 MS.gene053107:CDS
GTTGAGTTCCAGGATAATTG+GGG 0.594709 6.2:+62077 MS.gene053107:CDS
ATTCAAGCATGGTATGTCAT+GGG 0.596058 6.2:+60794 MS.gene053107:CDS
TGGCAACCCTCAACTCATGA+AGG 0.599388 6.2:+60076 MS.gene053107:CDS
CTGATATCATGGAAAGATGA+CGG 0.600764 6.2:-62050 None:intergenic
AGTACTTGTAACCATACTCA+GGG 0.602883 6.2:-63544 None:intergenic
CCCTTATCTGAGTCATAGAG+AGG 0.610008 6.2:-62014 None:intergenic
GCTGTACTTGGTGATAGTAT+TGG 0.617009 6.2:+60056 MS.gene053107:CDS
CGTACTTGCAGGGTGGACCT+CGG 0.621915 6.2:+63263 MS.gene053107:intron
AGAAAGTGAGATGAGTAGCA+TGG 0.631747 6.2:+59612 None:intergenic
CCATGGGTGATTGGGAAGAG+GGG 0.632965 6.2:+63513 MS.gene053107:CDS
GTAGCATGGCGTGTGGATGT+TGG 0.642842 6.2:+59626 MS.gene053107:CDS
ATACTTACTTAGCCCAAGCA+GGG 0.647476 6.2:-59882 None:intergenic
TAATCTTCGACCTCTAGCAG+TGG 0.651203 6.2:-59806 None:intergenic
CAAAATAATCAGCAGTACCG+AGG 0.656761 6.2:-63280 None:intergenic
AGCACCGAGGATGATGACTG+TGG 0.664143 6.2:-59670 None:intergenic
CACCGAGGATGATGACTGTG+GGG 0.674233 6.2:-59668 None:intergenic
TTGAGTTCCAGGATAATTGG+GGG 0.694550 6.2:+62078 MS.gene053107:CDS
ACCGAGGATGATGACTGTGG+GGG 0.704905 6.2:-59667 None:intergenic
GAGATGAGTAGCATGGCGTG+TGG 0.709846 6.2:+59619 None:intergenic
AGGACTACGCTTCAGCACCG+AGG 0.745029 6.2:-59683 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAGATGTATATTTAAA+TGG + chr6.2:62908-62927 MS.gene053107:intron 10.0%
!! AAAAAGATGTATATTTAAAT+GGG + chr6.2:62909-62928 MS.gene053107:intron 10.0%
!! ATGTCAATTAATTATTATAT+AGG + chr6.2:60769-60788 MS.gene053107:intron 10.0%
!! TTTAATTAGAATTGAAAATA+AGG - chr6.2:60147-60166 None:intergenic 10.0%
!!! GTTTAATTAATTTTACTTTT+TGG + chr6.2:61846-61865 MS.gene053107:intron 10.0%
!!! TTTTATTTGAAGTATATATA+TGG + chr6.2:59957-59976 MS.gene053107:intron 10.0%
!! TTTGAATTAAATACCAAAAT+TGG - chr6.2:61017-61036 None:intergenic 15.0%
!!! AAAATTTCCTTACAAATTTT+AGG + chr6.2:61554-61573 MS.gene053107:intron 15.0%
!! AAAGTCAATAAAAGCTATAA+AGG - chr6.2:62539-62558 None:intergenic 20.0%
!! ACTCTAATTATTATTTGTCA+TGG + chr6.2:60583-60602 MS.gene053107:intron 20.0%
!! ACTTCAATTCTTTGTTAAAA+GGG - chr6.2:61947-61966 None:intergenic 20.0%
!! CTCTAATTATTATTTGTCAT+GGG + chr6.2:60584-60603 MS.gene053107:intron 20.0%
!! GAAATTGATAAATCGATAAA+AGG + chr6.2:59775-59794 MS.gene053107:CDS 20.0%
!! TACTTCAATTCTTTGTTAAA+AGG - chr6.2:61948-61967 None:intergenic 20.0%
!! TATTAGTTGTTATACCTTAT+TGG + chr6.2:61392-61411 MS.gene053107:intron 20.0%
!! TTTAAGAAAAACATGCAAAT+AGG - chr6.2:61486-61505 None:intergenic 20.0%
!!! ATATGACCAATAATTTTTCT+GGG - chr6.2:62884-62903 None:intergenic 20.0%
!!! ATTCTTGTTTATTGATAACT+AGG + chr6.2:61310-61329 MS.gene053107:intron 20.0%
!!! CTTACTTGAACTAATTATTT+TGG - chr6.2:61262-61281 None:intergenic 20.0%
!!! TAAACTAGTAAAAAGGTTTT+AGG - chr6.2:62311-62330 None:intergenic 20.0%
!!! TAAAGAGAACTTTTACATTA+TGG + chr6.2:61502-61521 MS.gene053107:intron 20.0%
!!! TAGATTTGATGATTTCATTA+AGG - chr6.2:60949-60968 None:intergenic 20.0%
!!! TATTTTGTAAACATTCTGAT+AGG - chr6.2:61793-61812 None:intergenic 20.0%
!!! TCATCAAATCTACTTTATTT+TGG + chr6.2:60957-60976 MS.gene053107:intron 20.0%
!!! TGAAGTATCTTTTTAATTGA+TGG + chr6.2:61961-61980 MS.gene053107:intron 20.0%
! AAACCACAAGAGAAAAAATA+GGG + chr6.2:62727-62746 MS.gene053107:intron 25.0%
! AAGAATTATAATATTCCAGG+AGG - chr6.2:61159-61178 None:intergenic 25.0%
! ATAAAACTCATAAGCCAATT+GGG - chr6.2:61099-61118 None:intergenic 25.0%
! GAAGATAGAATTCGAAAAAA+GGG + chr6.2:60198-60217 MS.gene053107:CDS 25.0%
! GGTAAGAATTATAATATTCC+AGG - chr6.2:61162-61181 None:intergenic 25.0%
! TAACATAAAGACTACTAAAC+TGG - chr6.2:61183-61202 None:intergenic 25.0%
! TAAGCATGTAATGAATGAAT+GGG - chr6.2:60862-60881 None:intergenic 25.0%
! TAGTAGATAGTAGTTTCAAT+TGG + chr6.2:61201-61220 MS.gene053107:intron 25.0%
! TATAAAACTCATAAGCCAAT+TGG - chr6.2:61100-61119 None:intergenic 25.0%
! TATAGGCTAAACTAGTAAAA+AGG - chr6.2:62318-62337 None:intergenic 25.0%
! TCAATTATGAGTATACCATT+CGG + chr6.2:62559-62578 MS.gene053107:intron 25.0%
! TGAATATTTCATAAAACTCC+CGG + chr6.2:60360-60379 MS.gene053107:intron 25.0%
! TGATAATACATACTCTCTAA+AGG - chr6.2:60274-60293 None:intergenic 25.0%
! TTAACCATTTACTATGTATG+TGG - chr6.2:60455-60474 None:intergenic 25.0%
! TTATATAGGTTATTCAAGCA+TGG + chr6.2:60783-60802 MS.gene053107:intron 25.0%
!! CCAAAACTAAATTTGATAGT+AGG + chr6.2:60422-60441 MS.gene053107:intron 25.0%
!! GATATGACCAATAATTTTTC+TGG - chr6.2:62885-62904 None:intergenic 25.0%
!! TATATCTGGTTTGAATTGTA+TGG + chr6.2:60643-60662 MS.gene053107:CDS 25.0%
!! TTGATGATTTCATTAAGGTA+AGG - chr6.2:60944-60963 None:intergenic 25.0%
!! TTTTCAATCAAAACTCATGT+TGG + chr6.2:63213-63232 MS.gene053107:intron 25.0%
!!! CCTACTATCAAATTTAGTTT+TGG - chr6.2:60425-60444 None:intergenic 25.0%
!!! CTGTTAGTCTTTTTAATAAG+TGG + chr6.2:62126-62145 MS.gene053107:intron 25.0%
!!! TAAATAGGTATTGAAAAGGA+GGG + chr6.2:63035-63054 MS.gene053107:intron 25.0%
AAAGGAGAAACTAAATGATC+AGG - chr6.2:62521-62540 None:intergenic 30.0%
AACCAGATATATGAATCAAG+TGG - chr6.2:60634-60653 None:intergenic 30.0%
AAGACCACATACATAGTAAA+TGG + chr6.2:60448-60467 MS.gene053107:intron 30.0%
AAGCATGTAATGAATGAATG+GGG - chr6.2:60861-60880 None:intergenic 30.0%
ACTCTGAGCTTAAATTAGTA+AGG - chr6.2:63328-63347 None:intergenic 30.0%
ATAGCTACACTTCAAAAAGA+GGG - chr6.2:61437-61456 None:intergenic 30.0%
ATATAATCAACTTCACCTAG+TGG + chr6.2:62980-62999 MS.gene053107:intron 30.0%
ATCATCATTATCCTTCAAGT+TGG - chr6.2:59755-59774 None:intergenic 30.0%
ATCCACTTGATTCATATATC+TGG + chr6.2:60629-60648 MS.gene053107:CDS 30.0%
ATGAGACCACAAAAAACTAT+AGG - chr6.2:62335-62354 None:intergenic 30.0%
CTTCACTCCTAAAATTTGTA+AGG - chr6.2:61564-61583 None:intergenic 30.0%
CTTGAAATTCCTCAAAATTC+TGG + chr6.2:60989-61008 MS.gene053107:intron 30.0%
GAAACCACAAGAGAAAAAAT+AGG + chr6.2:62726-62745 MS.gene053107:intron 30.0%
GAGAATAGTTCAATTGTTAG+AGG + chr6.2:62848-62867 MS.gene053107:intron 30.0%
GATAAATCGATAAAAGGATC+AGG + chr6.2:59781-59800 MS.gene053107:CDS 30.0%
GCTAAGAAGAGTAAATCAAA+TGG - chr6.2:62384-62403 None:intergenic 30.0%
GGAAGATAGAATTCGAAAAA+AGG + chr6.2:60197-60216 MS.gene053107:CDS 30.0%
GTAAGCATGTAATGAATGAA+TGG - chr6.2:60863-60882 None:intergenic 30.0%
TAAATCCAAATCCAACTTGA+AGG + chr6.2:59741-59760 MS.gene053107:CDS 30.0%
TATAGCTACACTTCAAAAAG+AGG - chr6.2:61438-61457 None:intergenic 30.0%
TGCAGTAGAATATGAAAACA+CGG + chr6.2:63181-63200 MS.gene053107:intron 30.0%
TTAAACAAATCGTACTTGCA+GGG + chr6.2:63253-63272 MS.gene053107:intron 30.0%
TTTAAACAAATCGTACTTGC+AGG + chr6.2:63252-63271 MS.gene053107:intron 30.0%
TTTCATGCTTCATATAGACA+GGG + chr6.2:61349-61368 MS.gene053107:intron 30.0%
! ATAAAATGCCTTTTCACTCT+AGG + chr6.2:62224-62243 MS.gene053107:intron 30.0%
! CAACTAGCTCGAAAATATTT+TGG + chr6.2:61699-61718 MS.gene053107:intron 30.0%
! CTTTTCAATACCTATTTAGC+TGG - chr6.2:63033-63052 None:intergenic 30.0%
! GGTATCCAACAAATTGTTTT+TGG + chr6.2:63482-63501 MS.gene053107:CDS 30.0%
! GTTACTTTGAAGAGAAAGTT+GGG - chr6.2:62494-62513 None:intergenic 30.0%
! TTACTTTGAAGAGAAAGTTG+GGG - chr6.2:62493-62512 None:intergenic 30.0%
! TTTAGCATCCTTTCTCTTTT+GGG - chr6.2:62758-62777 None:intergenic 30.0%
! TTTGACCATCTTTTCTGAAT+AGG + chr6.2:62461-62480 MS.gene053107:intron 30.0%
! TTTGAGGAATTTCAAGTCAA+CGG - chr6.2:60985-61004 None:intergenic 30.0%
!! ATTATCCTTCAAGTTGGATT+TGG - chr6.2:59749-59768 None:intergenic 30.0%
!! CAGCTAAATAGGTATTGAAA+AGG + chr6.2:63031-63050 MS.gene053107:intron 30.0%
!! CTAAATAGGTATTGAAAAGG+AGG + chr6.2:63034-63053 MS.gene053107:intron 30.0%
!! CTCATTTTTCCTCTAACTAA+TGG + chr6.2:62350-62369 MS.gene053107:intron 30.0%
!!! AACAAATTGTTTTTGGTGGT+CGG + chr6.2:63489-63508 MS.gene053107:CDS 30.0%
!!! AGTGAAAAGGCATTTTATTG+TGG - chr6.2:62222-62241 None:intergenic 30.0%
!!! ATCCAACAAATTGTTTTTGG+TGG + chr6.2:63485-63504 MS.gene053107:CDS 30.0%
!!! GTTTAGCCTATAGTTTTTTG+TGG + chr6.2:62326-62345 MS.gene053107:intron 30.0%
!!! TTTAGTTTTGGACTCTTAGA+AGG - chr6.2:60413-60432 None:intergenic 30.0%
AAAAACAATAAATGCGCGCT+TGG - chr6.2:63415-63434 None:intergenic 35.0%
AACTTGTATCAGAAGAGACA+TGG - chr6.2:61752-61771 None:intergenic 35.0%
AAGTACTTGTAACCATACTC+AGG - chr6.2:63548-63567 None:intergenic 35.0%
AAGTAGCAAATGAAAGTGAG+TGG - chr6.2:60901-60920 None:intergenic 35.0%
AATAGCAAGAACAGCAACAA+TGG + chr6.2:61809-61828 MS.gene053107:intron 35.0%
ACTAAATAGCAAATACCTCC+TGG + chr6.2:61141-61160 MS.gene053107:intron 35.0%
ACTCAACATCACTGATATCA+TGG - chr6.2:62064-62083 None:intergenic 35.0%
AGAAACTAAATGATCAGGAG+TGG - chr6.2:62516-62535 None:intergenic 35.0%
AGTAAAAATTTGACAGAGCC+GGG - chr6.2:60381-60400 None:intergenic 35.0%
AGTACTTGTAACCATACTCA+GGG - chr6.2:63547-63566 None:intergenic 35.0%
AGTAGCAAATGAAAGTGAGT+GGG - chr6.2:60900-60919 None:intergenic 35.0%
ATGAAAAGCTCAGTCCAATA+AGG - chr6.2:61409-61428 None:intergenic 35.0%
ATGATTGACCTTTCTCTGAA+TGG + chr6.2:63449-63468 MS.gene053107:intron 35.0%
ATGTTGAGTTCCAGGATAAT+TGG + chr6.2:62075-62094 MS.gene053107:CDS 35.0%
ATTCAAGCATGGTATGTCAT+GGG + chr6.2:60794-60813 MS.gene053107:CDS 35.0%
ATTTAGACATGTGTGTACTG+AGG - chr6.2:62427-62446 None:intergenic 35.0%
CAATTGAACTATTCTCCATC+TGG - chr6.2:62844-62863 None:intergenic 35.0%
CACACATGTCTAAATTACCT+AGG + chr6.2:62432-62451 MS.gene053107:intron 35.0%
CTACAATTCTTCAAACTTGC+AGG + chr6.2:60829-60848 MS.gene053107:CDS 35.0%
CTGATATCATGGAAAGATGA+CGG - chr6.2:62053-62072 None:intergenic 35.0%
CTGCAAGTTTGAAGAATTGT+AGG - chr6.2:60831-60850 None:intergenic 35.0%
CTTTCATGCTTCATATAGAC+AGG + chr6.2:61348-61367 MS.gene053107:intron 35.0%
GACCACCAAAAACAATTTGT+TGG - chr6.2:63490-63509 None:intergenic 35.0%
GAGAAAAGTCCATTAGTTAG+AGG - chr6.2:62362-62381 None:intergenic 35.0%
GAGTAAAAATTTGACAGAGC+CGG - chr6.2:60382-60401 None:intergenic 35.0%
GGGATATCATTAGACTTGAT+TGG + chr6.2:62929-62948 MS.gene053107:intron 35.0%
GTAGAATATGAAAACACGGT+AGG + chr6.2:63185-63204 MS.gene053107:intron 35.0%
GTCTTGTATTGTTTAGAGAG+CGG + chr6.2:62783-62802 MS.gene053107:intron 35.0%
TATTCAAGCATGGTATGTCA+TGG + chr6.2:60793-60812 MS.gene053107:CDS 35.0%
TCACCTAGTGGAAAAAACAA+AGG + chr6.2:62992-63011 MS.gene053107:intron 35.0%
TCTCTTCTGATACAAGTTCT+AGG + chr6.2:61754-61773 MS.gene053107:intron 35.0%
TCTTGTATTGTTTAGAGAGC+GGG + chr6.2:62784-62803 MS.gene053107:intron 35.0%
TGAGTATACCATTCGGAAAA+AGG + chr6.2:62566-62585 MS.gene053107:intron 35.0%
TGATTGGCAACAAAACATTG+TGG + chr6.2:62945-62964 MS.gene053107:intron 35.0%
TGTTGAGTTCCAGGATAATT+GGG + chr6.2:62076-62095 MS.gene053107:CDS 35.0%
TTGATTTACTCTTCTTAGCG+AGG + chr6.2:62385-62404 MS.gene053107:intron 35.0%
TTTGGATTGTCTGATTGCTT+CGG + chr6.2:61864-61883 MS.gene053107:intron 35.0%
! AGTTCAATTGTTAGAGGTAC+AGG + chr6.2:62854-62873 MS.gene053107:intron 35.0%
! ATACTCTCTAAAGGTGACTT+TGG - chr6.2:60265-60284 None:intergenic 35.0%
! CAAAATTCTGGCACCAATTT+TGG + chr6.2:61001-61020 MS.gene053107:intron 35.0%
! CTTTAGCATCCTTTCTCTTT+TGG - chr6.2:62759-62778 None:intergenic 35.0%
! GCTACTTCTTCAGTTCTTTT+AGG + chr6.2:60914-60933 MS.gene053107:intron 35.0%
! GGTTACTTTGAAGAGAAAGT+TGG - chr6.2:62495-62514 None:intergenic 35.0%
! GTTCAATTGTTAGAGGTACA+GGG + chr6.2:62855-62874 MS.gene053107:intron 35.0%
!! AGAGATGAGAGTATTACGAT+AGG + chr6.2:62657-62676 MS.gene053107:intron 35.0%
!!! AAATTGGTGCCAGAATTTTG+AGG - chr6.2:61001-61020 None:intergenic 35.0%
!!! AAGCCTTTGTTTTTTCCACT+AGG - chr6.2:62998-63017 None:intergenic 35.0%
!!! CTACCCTATTTTTTCTCTTG+TGG - chr6.2:62733-62752 None:intergenic 35.0%
AACACAGAACGAGTAGTAGA+AGG - chr6.2:59706-59725 None:intergenic 40.0%
AATACTTACTTAGCCCAAGC+AGG - chr6.2:59886-59905 None:intergenic 40.0%
AATTCTATCTTCCACCTGGA+AGG - chr6.2:60190-60209 None:intergenic 40.0%
ACTCATAAGCCAATTGGGTT+CGG - chr6.2:61094-61113 None:intergenic 40.0%
AGATGGTCAAAACTAGTCCT+AGG - chr6.2:62452-62471 None:intergenic 40.0%
AGCCTCCTATTCAGAAAAGA+TGG - chr6.2:62469-62488 None:intergenic 40.0%
ATACTTACTTAGCCCAAGCA+GGG - chr6.2:59885-59904 None:intergenic 40.0%
ATCTGGTCTATCCTTCATAC+CGG - chr6.2:62827-62846 None:intergenic 40.0%
ATGGTTGTCACCAGCTAAAT+AGG + chr6.2:63020-63039 MS.gene053107:intron 40.0%
ATTATCGTGGCATTGTCTCT+TGG + chr6.2:62590-62609 MS.gene053107:intron 40.0%
CAAAATAATCAGCAGTACCG+AGG - chr6.2:63283-63302 None:intergenic 40.0%
CCTCTCTATGACTCAGATAA+GGG + chr6.2:62014-62033 MS.gene053107:CDS 40.0%
CTTGTATTGTTTAGAGAGCG+GGG + chr6.2:62785-62804 MS.gene053107:intron 40.0%
GATATCTGCCATTCAGAGAA+AGG - chr6.2:63460-63479 None:intergenic 40.0%
GATCGCGACGTTAATCTAAT+TGG + chr6.2:60676-60695 MS.gene053107:CDS 40.0%
GCAGATGTCAAATTCGTCAA+TGG + chr6.2:61983-62002 MS.gene053107:intron 40.0%
GCTTCGTCTATGACTTTGTA+GGG + chr6.2:60311-60330 MS.gene053107:intron 40.0%
GGAAAAAACAAAGGCTTCGA+TGG + chr6.2:63001-63020 MS.gene053107:intron 40.0%
GGAGTGAAGTTTATGTGTTG+AGG + chr6.2:61575-61594 MS.gene053107:intron 40.0%
GGGAAAACTAGTTGAAACAC+CGG + chr6.2:62805-62824 MS.gene053107:intron 40.0%
GGGAGACCCAGAAAAATTAT+TGG + chr6.2:62875-62894 MS.gene053107:intron 40.0%
GTTGAGTTCCAGGATAATTG+GGG + chr6.2:62077-62096 MS.gene053107:CDS 40.0%
TAGTTGAAACACCGGTATGA+AGG + chr6.2:62813-62832 MS.gene053107:intron 40.0%
TATCAGTGATGTTGAGTTCC+AGG + chr6.2:62067-62086 MS.gene053107:CDS 40.0%
TCCTCTCTATGACTCAGATA+AGG + chr6.2:62013-62032 MS.gene053107:CDS 40.0%
TCTCTACTACAATGCTTGCT+TGG - chr6.2:61056-61075 None:intergenic 40.0%
TCTCTGAATGGCAGATATCT+TGG + chr6.2:63461-63480 MS.gene053107:intron 40.0%
TGCTTCGTCTATGACTTTGT+AGG + chr6.2:60310-60329 MS.gene053107:intron 40.0%
TGTCCAAGTTGTACTAGGTA+CGG + chr6.2:61225-61244 MS.gene053107:intron 40.0%
TTCGAATTCTATCTTCCACC+TGG - chr6.2:60194-60213 None:intergenic 40.0%
TTGAGTTCCAGGATAATTGG+GGG + chr6.2:62078-62097 MS.gene053107:CDS 40.0%
TTGGTTGTCCAAGTTGTACT+AGG + chr6.2:61220-61239 MS.gene053107:intron 40.0%
! AAATGCCTTTTCACTCTAGG+AGG + chr6.2:62227-62246 MS.gene053107:intron 40.0%
! AGAAGAGTATACCACCAAGT+AGG - chr6.2:60546-60565 None:intergenic 40.0%
! CGATAATGCCTTTTTCCGAA+TGG - chr6.2:62577-62596 None:intergenic 40.0%
! CGTTTTTGCAAGCATCTTCA+AGG - chr6.2:60022-60041 None:intergenic 40.0%
! GACCATCTTTTCTGAATAGG+AGG + chr6.2:62464-62483 MS.gene053107:intron 40.0%
! GCTGTACTTGGTGATAGTAT+TGG + chr6.2:60056-60075 MS.gene053107:CDS 40.0%
! TTTAGTTTCCAACCTGTGTG+TGG + chr6.2:61916-61935 MS.gene053107:intron 40.0%
!! TTCGGAAAAAGGCATTATCG+TGG + chr6.2:62577-62596 MS.gene053107:intron 40.0%
!!! GTGGTTTTATGACCTTGCAA+TGG + chr6.2:62145-62164 MS.gene053107:intron 40.0%
AACAAATCGTACTTGCAGGG+TGG + chr6.2:63256-63275 MS.gene053107:intron 45.0%
ACTCGTTCCTTCATGAGTTG+AGG - chr6.2:60086-60105 None:intergenic 45.0%
ACTGAACTACGTGCTGTACT+TGG + chr6.2:60044-60063 MS.gene053107:CDS 45.0%
AGATTAACGTCGCGATCAGA+TGG - chr6.2:60673-60692 None:intergenic 45.0%
AGCAAATGAAAGTGAGTGGG+AGG - chr6.2:60897-60916 None:intergenic 45.0%
CAGTTCCTCCTAGAGTGAAA+AGG - chr6.2:62235-62254 None:intergenic 45.0%
CATACTCTCAGAGACCTACT+TGG + chr6.2:60529-60548 MS.gene053107:intron 45.0%
CCCTTATCTGAGTCATAGAG+AGG - chr6.2:62017-62036 None:intergenic 45.0%
CCTTCACAATTACCCTGCTT+GGG + chr6.2:59870-59889 MS.gene053107:CDS 45.0%
CTCATAAGCCAATTGGGTTC+GGG - chr6.2:61093-61112 None:intergenic 45.0%
GAACCGTACCTAGTACAACT+TGG - chr6.2:61231-61250 None:intergenic 45.0%
GGTATGAAGGATAGACCAGA+TGG + chr6.2:62826-62845 MS.gene053107:intron 45.0%
GTCTCTTGGATATGTTTCGC+AGG + chr6.2:62604-62623 MS.gene053107:intron 45.0%
GTGTTCCTTTCTTTCCTTCC+AGG + chr6.2:60173-60192 MS.gene053107:intron 45.0%
TAATCTTCGACCTCTAGCAG+TGG - chr6.2:59809-59828 None:intergenic 45.0%
TATGACCTTGCAATGGACAG+AGG + chr6.2:62152-62171 MS.gene053107:intron 45.0%
TCTAGGAGGAACTGACAACA+TGG + chr6.2:62241-62260 MS.gene053107:intron 45.0%
TGTAAGCATGTGCTGTCAGA+TGG - chr6.2:61664-61683 None:intergenic 45.0%
TTCAACCTCTGTCCATTGCA+AGG - chr6.2:62160-62179 None:intergenic 45.0%
TTCCACCTGGAAGGAAAGAA+AGG - chr6.2:60181-60200 None:intergenic 45.0%
TTCCTTTCTTTCCTTCCAGG+TGG + chr6.2:60176-60195 MS.gene053107:intron 45.0%
! CTCGTTCCTTCATGAGTTGA+GGG - chr6.2:60085-60104 None:intergenic 45.0%
! CTCTCTAAAGGTGACTTTGG+AGG - chr6.2:60262-60281 None:intergenic 45.0%
! GGCAACAACAGATCCAGTTT+TGG - chr6.2:60241-60260 None:intergenic 45.0%
!! TATTTAATTCAAATTTATAA+TGG + chr6.2:61024-61043 MS.gene053107:intron 5.0%
AAACACGCCCCCAATTATCC+TGG - chr6.2:62088-62107 None:intergenic 50.0%
ACTCTCAGAGACCTACTTGG+TGG + chr6.2:60532-60551 MS.gene053107:intron 50.0%
CATCTCTGCAACACTGAGCT+TGG - chr6.2:62644-62663 None:intergenic 50.0%
CCCAAGCAGGGTAATTGTGA+AGG - chr6.2:59873-59892 None:intergenic 50.0%
GACTTTCGTCGCTCCAAAAC+TGG + chr6.2:60225-60244 MS.gene053107:CDS 50.0%
GCCTTCACAATTACCCTGCT+TGG + chr6.2:59869-59888 MS.gene053107:CDS 50.0%
GGATTGAAGCTGCGAGCAAA+AGG - chr6.2:60613-60632 None:intergenic 50.0%
GGGATGACAAACCCTGAGTA+TGG + chr6.2:63533-63552 MS.gene053107:CDS 50.0%
GGGTAGCTCCCAAAAGAGAA+AGG + chr6.2:62747-62766 MS.gene053107:intron 50.0%
TCCATGGGTGATTGGGAAGA+GGG + chr6.2:63512-63531 MS.gene053107:CDS 50.0%
TGGCAACCCTCAACTCATGA+AGG + chr6.2:60076-60095 MS.gene053107:CDS 50.0%
TGGTATGTCATGGGTCGACT+TGG + chr6.2:60803-60822 MS.gene053107:CDS 50.0%
! AGGATAATTGGGGGCGTGTT+TGG + chr6.2:62087-62106 MS.gene053107:CDS 50.0%
! GGTATGTCATGGGTCGACTT+GGG + chr6.2:60804-60823 MS.gene053107:CDS 50.0%
!! GTATGTCATGGGTCGACTTG+GGG + chr6.2:60805-60824 MS.gene053107:CDS 50.0%
!!! GTTTTTGGTGGTCGGTCCAT+GGG + chr6.2:63497-63516 MS.gene053107:CDS 50.0%
!!! TGTTTTTGGTGGTCGGTCCA+TGG + chr6.2:63496-63515 MS.gene053107:CDS 50.0%
AAAAGGGAGCAGCCACACAC+AGG - chr6.2:61931-61950 None:intergenic 55.0%
ACCGAGGATGATGACTGTGG+GGG - chr6.2:59670-59689 None:intergenic 55.0%
CACCGAGGATGATGACTGTG+GGG - chr6.2:59671-59690 None:intergenic 55.0%
CCATGGGTGATTGGGAAGAG+GGG + chr6.2:63513-63532 MS.gene053107:CDS 55.0%
GCACCGAGGATGATGACTGT+GGG - chr6.2:59672-59691 None:intergenic 55.0%
GGATCAGGAACCACTGCTAG+AGG + chr6.2:59796-59815 MS.gene053107:CDS 55.0%
GTAGCATGGCGTGTGGATGT+TGG + chr6.2:59626-59645 MS.gene053107:CDS 55.0%
GTCCATGGGTGATTGGGAAG+AGG + chr6.2:63511-63530 MS.gene053107:CDS 55.0%
TCCCCCACAGTCATCATCCT+CGG + chr6.2:59666-59685 MS.gene053107:CDS 55.0%
TGGTCGGTCCATGGGTGATT+GGG + chr6.2:63505-63524 MS.gene053107:CDS 55.0%
TTGAGACGCCCGAACCCAAT+TGG + chr6.2:61082-61101 MS.gene053107:intron 55.0%
! AGCACCGAGGATGATGACTG+TGG - chr6.2:59673-59692 None:intergenic 55.0%
AGGACTACGCTTCAGCACCG+AGG - chr6.2:59686-59705 None:intergenic 60.0%
CCCCTCTTCCCAATCACCCA+TGG - chr6.2:63516-63535 None:intergenic 60.0%
CGTACTTGCAGGGTGGACCT+CGG + chr6.2:63263-63282 MS.gene053107:intron 60.0%
GTGGTCGGTCCATGGGTGAT+TGG + chr6.2:63504-63523 MS.gene053107:CDS 60.0%
GGGAGCAGCCACACACAGGT+TGG - chr6.2:61927-61946 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 59622 63577 59622 ID=MS.gene053107
chr6.2 mRNA 59622 63577 59622 ID=MS.gene053107.t1;Parent=MS.gene053107
chr6.2 exon 59622 59896 59622 ID=MS.gene053107.t1.exon1;Parent=MS.gene053107.t1
chr6.2 CDS 59622 59896 59622 ID=cds.MS.gene053107.t1;Parent=MS.gene053107.t1
chr6.2 exon 60016 60103 60016 ID=MS.gene053107.t1.exon2;Parent=MS.gene053107.t1
chr6.2 CDS 60016 60103 60016 ID=cds.MS.gene053107.t1;Parent=MS.gene053107.t1
chr6.2 exon 60195 60280 60195 ID=MS.gene053107.t1.exon3;Parent=MS.gene053107.t1
chr6.2 CDS 60195 60280 60195 ID=cds.MS.gene053107.t1;Parent=MS.gene053107.t1
chr6.2 exon 60624 60702 60624 ID=MS.gene053107.t1.exon4;Parent=MS.gene053107.t1
chr6.2 CDS 60624 60702 60624 ID=cds.MS.gene053107.t1;Parent=MS.gene053107.t1
chr6.2 exon 60791 60850 60791 ID=MS.gene053107.t1.exon5;Parent=MS.gene053107.t1
chr6.2 CDS 60791 60850 60791 ID=cds.MS.gene053107.t1;Parent=MS.gene053107.t1
chr6.2 exon 61987 62108 61987 ID=MS.gene053107.t1.exon6;Parent=MS.gene053107.t1
chr6.2 CDS 61987 62108 61987 ID=cds.MS.gene053107.t1;Parent=MS.gene053107.t1
chr6.2 exon 63274 63345 63274 ID=MS.gene053107.t1.exon7;Parent=MS.gene053107.t1
chr6.2 CDS 63274 63345 63274 ID=cds.MS.gene053107.t1;Parent=MS.gene053107.t1
chr6.2 exon 63475 63577 63475 ID=MS.gene053107.t1.exon8;Parent=MS.gene053107.t1
chr6.2 CDS 63475 63577 63475 ID=cds.MS.gene053107.t1;Parent=MS.gene053107.t1
Gene Sequence

>MS.gene053107

ATGAGTAGCATGGCGTGTGGATGTTGGTACTACAACTACTGCTGTCCCCCACAGTCATCATCCTCGGTGCTGAAGCGTAGTCCTTCTACTACTCGTTCTGTGTTTGTTTGTTGTGTCTCTAAATCCAAATCCAACTTGAAGGATAATGATGATGAAATTGATAAATCGATAAAAGGATCAGGAACCACTGCTAGAGGTCGAAGATTACTAAGAATTCGACAAGATAAACAACAACGCGAACACGAACGCCTTCACAATTACCCTGCTTGGGCTAAGTAAGTATTAGTAGTACTTTCTTTCTTTCTTTCTTTCTTTTTTATTATTGCATTATTGTATTTTATTTGAAGTATATATATGGTTTCTGAATGAATGAATATTTGCATAATAATGATAGAGTCCTTGAAGATGCTTGCAAAAACGACACTGAACTACGTGCTGTACTTGGTGATAGTATTGGCAACCCTCAACTCATGAAGGAACGAGTATGTTATCTTATGTTATCTTCTTTCTTACTTGCTACTTCCTTATTTTCAATTCTAATTAAATTTAATGTGTTCCTTTCTTTCCTTCCAGGTGGAAGATAGAATTCGAAAAAAGGGTAAAGACTTTCGTCGCTCCAAAACTGGATCTGTTGTTGCCTCCAAAGTCACCTTTAGAGAGTATGTATTATCATAATAATTAATGTTTTTGCTTCGTCTATGACTTTGTAGGGAGCTCTCAAATAGATTCATATAGTTATGAATATTTCATAAAACTCCCGGCTCTGTCAAATTTTTACTCATATTAGTCCTTCTAAGAGTCCAAAACTAAATTTGATAGTAGGTTAAAGACCACATACATAGTAAATGGTTAAAATATAGAGATCTAATTAATAGTTTAATAGAGTCGATGATCTGTTTGAAAAATTCATACTCTCAGAGACCTACTTGGTGGTATACTCTTCTAAATTTGTTCTCGCATTACTCTAATTATTATTTGTCATGGGATGCCTTTTGCTCGCAGCTTCAATCCACTTGATTCATATATCTGGTTTGAATTGTATGGATCACCATCTGATCGCGACGTTAATCTAATTGGCAGTGTATGTCTTTTCTTCTTTAGCTTTTCAATCTATATAATACATTCATCAAATCTTATTCTTTCATTCATGTCAATTAATTATTATATAGGTTATTCAAGCATGGTATGTCATGGGTCGACTTGGGGCCTACAATTCTTCAAACTTGCAGGTACTTACCCCATTCATTCATTACATGCTTACTATCGTCAATTCCTCCCACTCACTTTCATTTGCTACTTCTTCAGTTCTTTTAGGTATGCCTTACCTTAATGAAATCATCAAATCTACTTTATTTTGGTTCCGTTGACTTGAAATTCCTCAAAATTCTGGCACCAATTTTGGTATTTAATTCAAATTTATAATGGAGAGAGCCAAGCAAGCATTGTAGTAGAGAGTGAAATTGAGACGCCCGAACCCAATTGGCTTATGAGTTTTATACACATGTACTTTTATAAAAGTACTAAATAGCAAATACCTCCTGGAATATTATAATTCTTACCAGTTTAGTAGTCTTTATGTTAGTAGATAGTAGTTTCAATTGGTTGTCCAAGTTGTACTAGGTACGGTTCATACTTGACCAAAATAATTAGTTCAAGTAAGAGTATTACAGTCGCGATCATAGCAGAGTATTCTTGTTTATTGATAACTAGGTAAGAGCTTAAGTAGCTTTCATGCTTCATATAGACAGGGAATATTACAATTAAGATTATTATTAGTTGTTATACCTTATTGGACTGAGCTTTTCATGCTTTCCCTCTTTTTGAAGTGTAGCTATATGATTGAAATTACATGTCTAGATTTCCTATTTGCATGTTTTTCTTAAAGAGAACTTTTACATTATGGAATAGCATGAGCTCAGTACTATAACTGTGAAAATTTCCTTACAAATTTTAGGAGTGAAGTTTATGTGTTGAGGTGACTTTTTGTGTGATAGTATAGTACATGCACGTTATTGTATTCGTTATGTAATTACATTTAACCATCTGACAGCACATGCTTACACTTACACGTTAGCGACAACTAGCTCGAAAATATTTTGGCGATTAGATTTGTATTGCTAATAATATCCATGTCTCTTCTGATACAAGTTCTAGGATCATTTTCTCTGCCTATCAGAATGTTTACAAAATAGCAAGAACAGCAACAATGGAAGACACTGTAAAAGTTTAATTAATTTTACTTTTTGGATTGTCTGATTGCTTCGGCTATATGTGTCATAGAATTATCATTCATTTTTAGTTTCCAACCTGTGTGTGGCTGCTCCCTTTTAACAAAGAATTGAAGTATCTTTTTAATTGATGGCAGATGTCAAATTCGTCAATGGAGTATGATCCTCTCTATGACTCAGATAAGGGTTTCAAAGTGATGCCGTCATCTTTCCATGATATCAGTGATGTTGAGTTCCAGGATAATTGGGGGCGTGTTTGGTATATTGTCTAAAACTCTGTTAGTCTTTTTAATAAGTGGTTTTATGACCTTGCAATGGACAGAGGTTGAAAAAATAGAATGATGCAGATTAAATTATTAACAACATTAACCACAATAAAATGCCTTTTCACTCTAGGAGGAACTGACAACATGGATTCTATGATATCATAAATCATGTCTAGTGACAAACTATTTAAACCTAAAACCTTTTTACTAGTTTAGCCTATAGTTTTTTGTGGTCTCATTTTTCCTCTAACTAATGGACTTTTCTCCATTTGATTTACTCTTCTTAGCGAGGCTTTTAGAGATCTTCTCCTCAGTACACACATGTCTAAATTACCTAGGACTAGTTTTGACCATCTTTTCTGAATAGGAGGCTACCCCAACTTTCTCTTCAAAGTAACCACTCCTGATCATTTAGTTTCTCCTTTATAGCTTTTATTGACTTTTCAATTATGAGTATACCATTCGGAAAAAGGCATTATCGTGGCATTGTCTCTTGGATATGTTTCGCAGGAACATGAAATAAAACCAAGCTCAGTGTTGCAGAGATGAGAGTATTACGATAGGCGAGTTATTACTTACAAAAAAAAAGAAACAAGATTGTATCAAGAGAGAAACCACAAGAGAAAAAATAGGGTAGCTCCCAAAAGAGAAAGGATGCTAAAGTTGTGTCTTGTATTGTTTAGAGAGCGGGGAAAACTAGTTGAAACACCGGTATGAAGGATAGACCAGATGGAGAATAGTTCAATTGTTAGAGGTACAGGGAGACCCAGAAAAATTATTGGTCATATCATTAAAAAAGATGTATATTTAAATGGGATATCATTAGACTTGATTGGCAACAAAACATTGTGGATTATTTGATTCATATAATCAACTTCACCTAGTGGAAAAAACAAAGGCTTCGATGGTTGTCACCAGCTAAATAGGTATTGAAAAGGAGGGAATTTTTCTTTATTATACAATTTCTAGTAACTGAAAGTTTCAGAATTATAATTAAAGTTGTAGAGACTTAATAATTTAATACACAAACAATTAATAACAATGTCATTTAGTTAAATACATGACTGCAGTAGAATATGAAAACACGGTAGGATATATTTTCAATCAAAACTCATGTTGGTTCAATATGTTTAAGCTTTAAACAAATCGTACTTGCAGGGTGGACCTCGGTACTGCTGATTATTTTGCGATTGATGTGCTTCTCAACTGCCTTACTAATTTAAGCTCAGAGTAAGTTTGAATTACTGAACTACATGTAATAAAAATGTAAAGAATATATGTAATGTAACTATATGTCCAAGCGCGCATTTATTGTTTTTGTTATGCAAAAGTAATGATTGACCTTTCTCTGAATGGCAGATATCTTGGTATCCAACAAATTGTTTTTGGTGGTCGGTCCATGGGTGATTGGGAAGAGGGGATGACAAACCCTGAGTATGGTTACAAGTACTTCAAGATATGA

Protein sequence

>MS.gene053107.t1

MSSMACGCWYYNYCCPPQSSSSVLKRSPSTTRSVFVCCVSKSKSNLKDNDDEIDKSIKGSGTTARGRRLLRIRQDKQQREHERLHNYPAWAKVLEDACKNDTELRAVLGDSIGNPQLMKERVEDRIRKKGKDFRRSKTGSVVASKVTFRDFNPLDSYIWFELYGSPSDRDVNLIGSVIQAWYVMGRLGAYNSSNLQMSNSSMEYDPLYDSDKGFKVMPSSFHDISDVEFQDNWGRVWVDLGTADYFAIDVLLNCLTNLSSEYLGIQQIVFGGRSMGDWEEGMTNPEYGYKYFKI