Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80058.t1 | XP_024626113.1 | 97.4 | 306 | 8 | 0 | 1 | 306 | 1 | 306 | 3.70E-167 | 597.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80058.t1 | B2UXL6 | 37.8 | 270 | 125 | 10 | 11 | 276 | 3 | 233 | 2.1e-30 | 134.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80058.t1 | G7ID60 | 97.4 | 306 | 8 | 0 | 1 | 306 | 1 | 306 | 2.6e-167 | 597.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051956 | MS.gene80058 | PPI |
| MS.gene76157 | MS.gene80058 | PPI |
| MS.gene80058 | MS.gene057003 | PPI |
| MS.gene80058 | MS.gene85230 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80058.t1 | MTR_1g104500 | 97.386 | 306 | 8 | 0 | 1 | 306 | 1 | 306 | 0.0 | 621 |
| MS.gene80058.t1 | MTR_5g006290 | 71.661 | 307 | 86 | 1 | 1 | 306 | 1 | 307 | 2.65e-169 | 472 |
| MS.gene80058.t1 | MTR_5g006290 | 74.502 | 251 | 63 | 1 | 1 | 250 | 1 | 251 | 5.66e-143 | 404 |
| MS.gene80058.t1 | MTR_5g006300 | 69.880 | 249 | 62 | 3 | 9 | 250 | 8 | 250 | 9.98e-124 | 355 |
| MS.gene80058.t1 | MTR_2g099720 | 34.848 | 330 | 178 | 5 | 3 | 297 | 45 | 372 | 1.10e-63 | 206 |
| MS.gene80058.t1 | MTR_1g104513 | 81.013 | 79 | 14 | 1 | 205 | 283 | 1 | 78 | 3.94e-36 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80058.t1 | AT4G14930 | 61.311 | 305 | 110 | 5 | 8 | 306 | 13 | 315 | 1.58e-135 | 387 |
| MS.gene80058.t1 | AT4G14930 | 60.219 | 274 | 102 | 4 | 8 | 276 | 13 | 284 | 2.37e-120 | 348 |
| MS.gene80058.t1 | AT1G72880 | 34.848 | 330 | 172 | 4 | 2 | 294 | 54 | 377 | 1.09e-64 | 208 |
| MS.gene80058.t1 | AT1G72880 | 34.848 | 330 | 172 | 4 | 2 | 294 | 54 | 377 | 1.09e-64 | 208 |
Find 65 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAAATAAAAGACTTTC+AGG | 0.149345 | 1.1:-74759116 | None:intergenic |
| ACTACAGCCTATGCAGTTTC+TGG | 0.181881 | 1.1:+74757332 | MS.gene80058:CDS |
| ACCTATCATAAGTGCTTTAC+TGG | 0.246186 | 1.1:+74758710 | MS.gene80058:CDS |
| TCCATCAATGTGAACTTTCT+TGG | 0.253618 | 1.1:-74757309 | None:intergenic |
| CGGCAAGGGTGAAGTCATTT+AGG | 0.287038 | 1.1:-74758674 | None:intergenic |
| CTTTCCTACAATTGCTGATC+TGG | 0.337561 | 1.1:+74757685 | MS.gene80058:CDS |
| TTCTGATTTGCAACGTTGCT+TGG | 0.339298 | 1.1:-74758786 | None:intergenic |
| TCCAGCTGATTGCACTTCTC+TGG | 0.339357 | 1.1:+74757646 | MS.gene80058:CDS |
| TGAACTTTCTTGGCAGCTAT+AGG | 0.341277 | 1.1:-74757299 | None:intergenic |
| ACGAATCAGGGGCGCAGATT+TGG | 0.341315 | 1.1:-74756755 | None:intergenic |
| GTTTACTCAGGCACAGTTGC+TGG | 0.358083 | 1.1:+74758441 | MS.gene80058:CDS |
| CATTATGTTACATACGAATC+AGG | 0.383749 | 1.1:-74756768 | None:intergenic |
| TGCACCTGGCCTCAGAGCTT+TGG | 0.388469 | 1.1:+74756698 | MS.gene80058:CDS |
| GCCAAGAAAGTTCACATTGA+TGG | 0.391157 | 1.1:+74757308 | MS.gene80058:CDS |
| ATGTGCTGCTGTTTCTGTAT+TGG | 0.399298 | 1.1:-74759066 | None:intergenic |
| GAACTTTCTTGGCAGCTATA+GGG | 0.401291 | 1.1:-74757298 | None:intergenic |
| CCCTCTTGCTGCTATCTCTC+AGG | 0.436326 | 1.1:+74759417 | MS.gene80058:CDS |
| TCATATGAAATTGAGATAGA+AGG | 0.443844 | 1.1:-74758492 | None:intergenic |
| GATTTGGAGATTGTAGAGAT+TGG | 0.456249 | 1.1:-74756739 | None:intergenic |
| CTATCTCAATTTCATATGAC+TGG | 0.460076 | 1.1:+74758496 | MS.gene80058:CDS |
| GGGGTACAAGCTAACTAAGC+AGG | 0.460697 | 1.1:+74758968 | MS.gene80058:intron |
| CGCTATCATCATGATCAAGT+TGG | 0.466868 | 1.1:-74759271 | None:intergenic |
| CATACCAGATCAGCAATTGT+AGG | 0.483325 | 1.1:-74757689 | None:intergenic |
| GGGTAAGAGTTTAATCAAGA+TGG | 0.486138 | 1.1:+74758989 | MS.gene80058:CDS |
| CCCAGAGAAGTGCAATCAGC+TGG | 0.489447 | 1.1:-74757647 | None:intergenic |
| AATTGTAGGAAAGAGTGCTT+TGG | 0.493392 | 1.1:-74757675 | None:intergenic |
| ACCAGTAAAGCACTTATGAT+AGG | 0.498108 | 1.1:-74758711 | None:intergenic |
| TAAGCATGCTTGCGCGGCAA+GGG | 0.505144 | 1.1:-74758688 | None:intergenic |
| GTAAGCATGCTTGCGCGGCA+AGG | 0.505343 | 1.1:-74758689 | None:intergenic |
| ATCATGATCACAAACGATGA+TGG | 0.505645 | 1.1:+74756669 | MS.gene80058:CDS |
| CGGTGATCATAAATCTCTGC+AGG | 0.508096 | 1.1:+74759292 | MS.gene80058:CDS |
| TGCTGCTATCTCTCAGGCAG+AGG | 0.508377 | 1.1:+74759423 | MS.gene80058:CDS |
| CCAGCTGATTGCACTTCTCT+GGG | 0.509126 | 1.1:+74757647 | MS.gene80058:CDS |
| TACTATCAATCCAGGGTCAA+AGG | 0.516690 | 1.1:+74758642 | MS.gene80058:intron |
| GCTATCATCATGATCAAGTT+GGG | 0.519152 | 1.1:-74759270 | None:intergenic |
| CTCAGAATCTCCCTCTTCAT+CGG | 0.524209 | 1.1:+74759486 | MS.gene80058:CDS |
| GGTAATAAGTGGCATAAACA+TGG | 0.524866 | 1.1:+74758052 | MS.gene80058:intron |
| GATTGTAGAGATTGGTGTCA+AGG | 0.525117 | 1.1:-74756731 | None:intergenic |
| ATTATGTTACATACGAATCA+GGG | 0.529718 | 1.1:-74756767 | None:intergenic |
| TTAACCAAAGCTCTGAGGCC+AGG | 0.534454 | 1.1:-74756702 | None:intergenic |
| CACAGTTGCTGGAGCTCGAG+AGG | 0.534617 | 1.1:+74758452 | MS.gene80058:CDS |
| CTGTGAGTCACAGTATTACA+TGG | 0.535793 | 1.1:+74757270 | MS.gene80058:CDS |
| GGTAAGAGTTTAATCAAGAT+GGG | 0.542532 | 1.1:+74758990 | MS.gene80058:CDS |
| AGAGTTTAATCAAGATGGGA+TGG | 0.551266 | 1.1:+74758994 | MS.gene80058:CDS |
| CCTGAGAGATAGCAGCAAGA+GGG | 0.560930 | 1.1:-74759417 | None:intergenic |
| TATTATAGAGCCGATGAAGA+GGG | 0.563871 | 1.1:-74759496 | None:intergenic |
| GTATTATAGAGCCGATGAAG+AGG | 0.578969 | 1.1:-74759497 | None:intergenic |
| GCATATTTACAGGTAATAAG+TGG | 0.582535 | 1.1:+74758041 | MS.gene80058:intron |
| CTGAGAGATAGCAGCAAGAG+GGG | 0.583404 | 1.1:-74759416 | None:intergenic |
| GATAGGTAAGCATGCTTGCG+CGG | 0.591817 | 1.1:-74758694 | None:intergenic |
| AAGCAACGTTGCAAATCAGA+AGG | 0.614662 | 1.1:+74758788 | MS.gene80058:CDS |
| GCCTGAGAGATAGCAGCAAG+AGG | 0.617751 | 1.1:-74759418 | None:intergenic |
| CATTCAAGCAAAATGGAGGA+AGG | 0.620237 | 1.1:+74756627 | None:intergenic |
| GAAGCAAATCACCTCTGAGA+CGG | 0.627115 | 1.1:+74759016 | MS.gene80058:CDS |
| GGGTACAAGCTAACTAAGCA+GGG | 0.630776 | 1.1:+74758969 | MS.gene80058:CDS |
| GATCATAAATCTCTGCAGGA+AGG | 0.638161 | 1.1:+74759296 | MS.gene80058:CDS |
| CAAATCACCTCTGAGACGGA+AGG | 0.643778 | 1.1:+74759020 | MS.gene80058:CDS |
| AAACAAACCAGAAACTGCAT+AGG | 0.644138 | 1.1:-74757339 | None:intergenic |
| GATGATGGAATCGATGCACC+TGG | 0.645617 | 1.1:+74756684 | MS.gene80058:CDS |
| GTAATAAGTGGCATAAACAT+GGG | 0.650041 | 1.1:+74758053 | MS.gene80058:CDS |
| CAACTTGATCATGATGATAG+CGG | 0.662382 | 1.1:+74759272 | MS.gene80058:CDS |
| GAGCTTTAACCAAAGCTCTG+AGG | 0.681690 | 1.1:-74756707 | None:intergenic |
| ATAAACATGGGTAACAACTG+TGG | 0.695093 | 1.1:+74758065 | MS.gene80058:CDS |
| GAGGAAGGTAACAATAACAG+AGG | 0.698663 | 1.1:+74756642 | MS.gene80058:CDS |
| TTATGTTACATACGAATCAG+GGG | 0.702173 | 1.1:-74756766 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAAATAAAAATTAT+TGG | + | chr1.1:74759328-74759347 | MS.gene80058:intron | 0.0% |
| !! | ACCAAAATAAATAAATAAAA+TGG | - | chr1.1:74757831-74757850 | None:intergenic | 10.0% |
| !!! | ACCATTTTATTTATTTATTT+TGG | + | chr1.1:74757827-74757846 | MS.gene80058:intron | 10.0% |
| !!! | TTTTATTTATTTATTTTGGT+AGG | + | chr1.1:74757831-74757850 | MS.gene80058:intron | 10.0% |
| !! | CAGTACAAAAAAAAATTTAA+TGG | - | chr1.1:74758399-74758418 | None:intergenic | 15.0% |
| !! | TTTAATACAAGTTAATGAAA+GGG | - | chr1.1:74757513-74757532 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTTGTACTGATT+AGG | + | chr1.1:74758402-74758421 | MS.gene80058:intron | 15.0% |
| !!! | AGAGCTTTTATTAATATATA+TGG | + | chr1.1:74758589-74758608 | MS.gene80058:intron | 15.0% |
| !!! | GTATACAATTTTAATTTTGT+AGG | + | chr1.1:74759238-74759257 | MS.gene80058:intron | 15.0% |
| !!! | TTTTAATACAAGTTAATGAA+AGG | - | chr1.1:74757514-74757533 | None:intergenic | 15.0% |
| !! | ACTTAACTCTATTTCAAAAT+TGG | + | chr1.1:74757225-74757244 | MS.gene80058:intron | 20.0% |
| !! | GAAAAACATAAATTATACCA+AGG | - | chr1.1:74757381-74757400 | None:intergenic | 20.0% |
| !!! | AATTGATTCTATTTGAAGAT+AGG | + | chr1.1:74757014-74757033 | MS.gene80058:intron | 20.0% |
| !!! | AATTTTGGTCTATTTAAAAG+CGG | - | chr1.1:74756936-74756955 | None:intergenic | 20.0% |
| !!! | ACTCTTTTGGTTAAATAAAA+AGG | - | chr1.1:74758232-74758251 | None:intergenic | 20.0% |
| !!! | AGATTGTCAAAACTATTTTA+AGG | + | chr1.1:74759447-74759466 | MS.gene80058:CDS | 20.0% |
| !!! | ATTTTAATTTTGTAGGTAAG+AGG | + | chr1.1:74759245-74759264 | MS.gene80058:intron | 20.0% |
| !!! | GTTAATTTGTTATGATTCAA+AGG | + | chr1.1:74758907-74758926 | MS.gene80058:intron | 20.0% |
| !!! | TAAATAAAATGGTTTGCATT+TGG | - | chr1.1:74757820-74757839 | None:intergenic | 20.0% |
| !!! | TATGTTGGTTTTTTTTTGTT+TGG | + | chr1.1:74758811-74758830 | MS.gene80058:intron | 20.0% |
| !!! | TTTGTAAAACTGTTTTTCAT+CGG | + | chr1.1:74757470-74757489 | MS.gene80058:intron | 20.0% |
| ! | AACATAAATTATACCAAGGA+AGG | - | chr1.1:74757377-74757396 | None:intergenic | 25.0% |
| ! | AAGACGAATTTGTCAAAAAA+TGG | - | chr1.1:74759170-74759189 | None:intergenic | 25.0% |
| ! | AATATAAAACAAGTGCTATC+TGG | - | chr1.1:74758867-74758886 | None:intergenic | 25.0% |
| ! | AATTTAATGGCAAATGTTAG+TGG | - | chr1.1:74758386-74758405 | None:intergenic | 25.0% |
| ! | ACATAAATTATACCAAGGAA+GGG | - | chr1.1:74757376-74757395 | None:intergenic | 25.0% |
| ! | AGATTAATATCTGACCATTT+GGG | + | chr1.1:74758617-74758636 | MS.gene80058:intron | 25.0% |
| ! | AGTAATTACATTGTTGGAAT+GGG | + | chr1.1:74757758-74757777 | MS.gene80058:intron | 25.0% |
| ! | ATTAAGATGACTAAAGATGA+GGG | - | chr1.1:74758118-74758137 | None:intergenic | 25.0% |
| ! | ATTATGTTACATACGAATCA+GGG | - | chr1.1:74756770-74756789 | None:intergenic | 25.0% |
| ! | TAGATTAATATCTGACCATT+TGG | + | chr1.1:74758616-74758635 | MS.gene80058:intron | 25.0% |
| ! | TATTAAGATGACTAAAGATG+AGG | - | chr1.1:74758119-74758138 | None:intergenic | 25.0% |
| ! | TCATATGAAATTGAGATAGA+AGG | - | chr1.1:74758495-74758514 | None:intergenic | 25.0% |
| ! | TCTTCAAATAGAATCAATTC+TGG | - | chr1.1:74757013-74757032 | None:intergenic | 25.0% |
| ! | TCTTTGAGTAATTACATTGT+TGG | + | chr1.1:74757752-74757771 | MS.gene80058:intron | 25.0% |
| ! | TTATTACCTGTAAATATGCA+TGG | - | chr1.1:74758040-74758059 | None:intergenic | 25.0% |
| ! | TTATTTAACCAAAAGAGTAG+TGG | + | chr1.1:74758234-74758253 | MS.gene80058:intron | 25.0% |
| !! | AAATAGACCAAAATTGATTC+CGG | + | chr1.1:74756941-74756960 | MS.gene80058:intron | 25.0% |
| !! | TAACTGATTCTCGTAAAATA+GGG | - | chr1.1:74756894-74756913 | None:intergenic | 25.0% |
| !! | TTAACTGATTCTCGTAAAAT+AGG | - | chr1.1:74756895-74756914 | None:intergenic | 25.0% |
| !!! | ATATTCAAAAAGCACTTTTG+AGG | - | chr1.1:74758759-74758778 | None:intergenic | 25.0% |
| !!! | CATGCTTTTTTTAGTTGTAA+AGG | - | chr1.1:74758169-74758188 | None:intergenic | 25.0% |
| !!! | GTATATTTGAAATGCTTTTG+TGG | + | chr1.1:74758518-74758537 | MS.gene80058:intron | 25.0% |
| !!! | GTCAAAACTATTTTAAGGAT+TGG | + | chr1.1:74759452-74759471 | MS.gene80058:CDS | 25.0% |
| AACTAGAAGTAGTGCAAATA+AGG | - | chr1.1:74757901-74757920 | None:intergenic | 30.0% | |
| ACGAATTTGTCAAAAAATGG+TGG | - | chr1.1:74759167-74759186 | None:intergenic | 30.0% | |
| ACTAGAAGTAGTGCAAATAA+GGG | - | chr1.1:74757900-74757919 | None:intergenic | 30.0% | |
| ACTCGTTTATTATGTACGTA+CGG | - | chr1.1:74756838-74756857 | None:intergenic | 30.0% | |
| CAGTTAATTAAGTGTACGTT+TGG | + | chr1.1:74756908-74756927 | MS.gene80058:intron | 30.0% | |
| CATAAATTATACCAAGGAAG+GGG | - | chr1.1:74757375-74757394 | None:intergenic | 30.0% | |
| CATTATGTTACATACGAATC+AGG | - | chr1.1:74756771-74756790 | None:intergenic | 30.0% | |
| CTATCTCAATTTCATATGAC+TGG | + | chr1.1:74758496-74758515 | MS.gene80058:CDS | 30.0% | |
| CTTGCAAATAAAAGACTTTC+AGG | - | chr1.1:74759119-74759138 | None:intergenic | 30.0% | |
| GAGTAATTACATTGTTGGAA+TGG | + | chr1.1:74757757-74757776 | MS.gene80058:intron | 30.0% | |
| GATTAATATCTGACCATTTG+GGG | + | chr1.1:74758618-74758637 | MS.gene80058:intron | 30.0% | |
| GCATATTTACAGGTAATAAG+TGG | + | chr1.1:74758041-74758060 | MS.gene80058:intron | 30.0% | |
| GGTAAGAGTTTAATCAAGAT+GGG | + | chr1.1:74758990-74759009 | MS.gene80058:CDS | 30.0% | |
| GTAAAGAATTTGCATAAGGA+AGG | - | chr1.1:74757620-74757639 | None:intergenic | 30.0% | |
| GTAATAAGTGGCATAAACAT+GGG | + | chr1.1:74758053-74758072 | MS.gene80058:CDS | 30.0% | |
| TCAAATAGAATCAATTCTGG+AGG | - | chr1.1:74757010-74757029 | None:intergenic | 30.0% | |
| TCCTGTAAAGAATTTGCATA+AGG | - | chr1.1:74757624-74757643 | None:intergenic | 30.0% | |
| TCCTTATGCAAATTCTTTAC+AGG | + | chr1.1:74757620-74757639 | MS.gene80058:intron | 30.0% | |
| TGAGTAAACACTGCATAAAA+GGG | - | chr1.1:74758430-74758449 | None:intergenic | 30.0% | |
| TTATGTTACATACGAATCAG+GGG | - | chr1.1:74756769-74756788 | None:intergenic | 30.0% | |
| ! | AATTTTACGAACACCTTTCA+AGG | - | chr1.1:74757857-74757876 | None:intergenic | 30.0% |
| ! | TTTTGTGCTCATAACTGTAA+TGG | + | chr1.1:74758292-74758311 | MS.gene80058:intron | 30.0% |
| ! | TTTTTCATCGGATGAAGTTT+TGG | + | chr1.1:74757482-74757501 | MS.gene80058:intron | 30.0% |
| !! | CTTTTATTTGCAAGAGAAGT+AGG | + | chr1.1:74759125-74759144 | MS.gene80058:intron | 30.0% |
| AAAACTAAAACTCGAACTGC+AGG | - | chr1.1:74757732-74757751 | None:intergenic | 35.0% | |
| AAACAAACCAGAAACTGCAT+AGG | - | chr1.1:74757342-74757361 | None:intergenic | 35.0% | |
| AACAGACATAATACAGAGTG+TGG | + | chr1.1:74759357-74759376 | MS.gene80058:intron | 35.0% | |
| AATGAATAATTTCGTCCAGC+TGG | + | chr1.1:74758003-74758022 | MS.gene80058:intron | 35.0% | |
| AATGTGCCATGCATATTTAC+AGG | + | chr1.1:74758031-74758050 | MS.gene80058:intron | 35.0% | |
| ACCTATCATAAGTGCTTTAC+TGG | + | chr1.1:74758710-74758729 | MS.gene80058:CDS | 35.0% | |
| AGAGTTTAATCAAGATGGGA+TGG | + | chr1.1:74758994-74759013 | MS.gene80058:CDS | 35.0% | |
| ATAAACATGGGTAACAACTG+TGG | + | chr1.1:74758065-74758084 | MS.gene80058:CDS | 35.0% | |
| ATCATGATCACAAACGATGA+TGG | + | chr1.1:74756669-74756688 | MS.gene80058:CDS | 35.0% | |
| CAACTTGATCATGATGATAG+CGG | + | chr1.1:74759272-74759291 | MS.gene80058:CDS | 35.0% | |
| CTGAGTAAACACTGCATAAA+AGG | - | chr1.1:74758431-74758450 | None:intergenic | 35.0% | |
| GATTCTGACTAATAGTGAGT+TGG | - | chr1.1:74757141-74757160 | None:intergenic | 35.0% | |
| GATTTGGAGATTGTAGAGAT+TGG | - | chr1.1:74756742-74756761 | None:intergenic | 35.0% | |
| GCTATCATCATGATCAAGTT+GGG | - | chr1.1:74759273-74759292 | None:intergenic | 35.0% | |
| GGGTAAGAGTTTAATCAAGA+TGG | + | chr1.1:74758989-74759008 | MS.gene80058:CDS | 35.0% | |
| GGTAATAAGTGGCATAAACA+TGG | + | chr1.1:74758052-74758071 | MS.gene80058:intron | 35.0% | |
| GTACGTACATAATAAACGAG+TGG | + | chr1.1:74756837-74756856 | MS.gene80058:intron | 35.0% | |
| TCCATCAATGTGAACTTTCT+TGG | - | chr1.1:74757312-74757331 | None:intergenic | 35.0% | |
| ! | ACCAGTAAAGCACTTATGAT+AGG | - | chr1.1:74758714-74758733 | None:intergenic | 35.0% |
| ! | AGTGAATGGTGTTTGGAATT+TGG | - | chr1.1:74757112-74757131 | None:intergenic | 35.0% |
| ! | ATAATTTTTCTCCTTCGTCC+GGG | - | chr1.1:74758359-74758378 | None:intergenic | 35.0% |
| ! | CTTTTATGCAGTGTTTACTC+AGG | + | chr1.1:74758429-74758448 | MS.gene80058:intron | 35.0% |
| ! | GATAATTTTTCTCCTTCGTC+CGG | - | chr1.1:74758360-74758379 | None:intergenic | 35.0% |
| ! | TAGGAGGAAATGGGATTTTA+AGG | + | chr1.1:74758206-74758225 | MS.gene80058:intron | 35.0% |
| ! | TTGCAAATCAGAAGGTATGT+TGG | + | chr1.1:74758796-74758815 | MS.gene80058:intron | 35.0% |
| !! | AACTGTAATGGATTGAGCTA+AGG | + | chr1.1:74758304-74758323 | MS.gene80058:intron | 35.0% |
| !! | AATTGTAGGAAAGAGTGCTT+TGG | - | chr1.1:74757678-74757697 | None:intergenic | 35.0% |
| !! | ACTGTAATGGATTGAGCTAA+GGG | + | chr1.1:74758305-74758324 | MS.gene80058:intron | 35.0% |
| !! | AGCACTTTTGAGGATATCTT+TGG | - | chr1.1:74758749-74758768 | None:intergenic | 35.0% |
| !!! | TTATTTTGGTAGGCCTTGAA+AGG | + | chr1.1:74757841-74757860 | MS.gene80058:intron | 35.0% |
| AAGCAACGTTGCAAATCAGA+AGG | + | chr1.1:74758788-74758807 | MS.gene80058:CDS | 40.0% | |
| ACACTGAAGTAGCATGAATG+TGG | - | chr1.1:74757413-74757432 | None:intergenic | 40.0% | |
| ACAGAGTAATTGTGCATCTC+CGG | - | chr1.1:74756963-74756982 | None:intergenic | 40.0% | |
| AGCATGTTTGTGAAGAGAGA+AGG | + | chr1.1:74758183-74758202 | MS.gene80058:intron | 40.0% | |
| CATACCAGATCAGCAATTGT+AGG | - | chr1.1:74757692-74757711 | None:intergenic | 40.0% | |
| CGCTATCATCATGATCAAGT+TGG | - | chr1.1:74759274-74759293 | None:intergenic | 40.0% | |
| CTGTGAGTCACAGTATTACA+TGG | + | chr1.1:74757270-74757289 | MS.gene80058:CDS | 40.0% | |
| CTTTCCTACAATTGCTGATC+TGG | + | chr1.1:74757685-74757704 | MS.gene80058:CDS | 40.0% | |
| GAACTTTCTTGGCAGCTATA+GGG | - | chr1.1:74757301-74757320 | None:intergenic | 40.0% | |
| GACAAGAAGCAGATAGAGTA+AGG | - | chr1.1:74757796-74757815 | None:intergenic | 40.0% | |
| GAGGAAGGTAACAATAACAG+AGG | + | chr1.1:74756642-74756661 | MS.gene80058:CDS | 40.0% | |
| GAGGTAAAGTGAATGGTGTT+TGG | - | chr1.1:74757119-74757138 | None:intergenic | 40.0% | |
| GATCATAAATCTCTGCAGGA+AGG | + | chr1.1:74759296-74759315 | MS.gene80058:CDS | 40.0% | |
| GCCAAGAAAGTTCACATTGA+TGG | + | chr1.1:74757308-74757327 | MS.gene80058:CDS | 40.0% | |
| TACTATCAATCCAGGGTCAA+AGG | + | chr1.1:74758642-74758661 | MS.gene80058:intron | 40.0% | |
| TGAACTTTCTTGGCAGCTAT+AGG | - | chr1.1:74757302-74757321 | None:intergenic | 40.0% | |
| TGTTTGTGAAGAGAGAAGGT+AGG | + | chr1.1:74758187-74758206 | MS.gene80058:intron | 40.0% | |
| TTCTTCTGTGTCTCCCAAAA+GGG | + | chr1.1:74758948-74758967 | MS.gene80058:intron | 40.0% | |
| TTGGGGATACTATCAATCCA+GGG | + | chr1.1:74758635-74758654 | MS.gene80058:intron | 40.0% | |
| TTTGGGGATACTATCAATCC+AGG | + | chr1.1:74758634-74758653 | MS.gene80058:intron | 40.0% | |
| ! | GAGCTATACCACTACTCTTT+TGG | - | chr1.1:74758245-74758264 | None:intergenic | 40.0% |
| ! | GGATTGATAGTATCCCCAAA+TGG | - | chr1.1:74758634-74758653 | None:intergenic | 40.0% |
| ! | TCTGACTAATAGTGAGTTGG+AGG | - | chr1.1:74757138-74757157 | None:intergenic | 40.0% |
| ! | TGAGTTGGAGGTAAAGTGAA+TGG | - | chr1.1:74757126-74757145 | None:intergenic | 40.0% |
| ! | TGCATCTCCGGAATCAATTT+TGG | - | chr1.1:74756951-74756970 | None:intergenic | 40.0% |
| ! | TGCTTTTGTGGCTATATTGC+TGG | + | chr1.1:74758530-74758549 | MS.gene80058:intron | 40.0% |
| ! | TTCTGATTTGCAACGTTGCT+TGG | - | chr1.1:74758789-74758808 | None:intergenic | 40.0% |
| !! | ATGTGCTGCTGTTTCTGTAT+TGG | - | chr1.1:74759069-74759088 | None:intergenic | 40.0% |
| !! | CTGTAATGGATTGAGCTAAG+GGG | + | chr1.1:74758306-74758325 | MS.gene80058:intron | 40.0% |
| !! | GATTGTAGAGATTGGTGTCA+AGG | - | chr1.1:74756734-74756753 | None:intergenic | 40.0% |
| !!! | AGTTAGCTTGTACCCCTTTT+GGG | - | chr1.1:74758964-74758983 | None:intergenic | 40.0% |
| !!! | TAGTTAGCTTGTACCCCTTT+TGG | - | chr1.1:74758965-74758984 | None:intergenic | 40.0% |
| !!! | TTCTGTTTTTTCCCCTTCCT+TGG | + | chr1.1:74757361-74757380 | MS.gene80058:intron | 40.0% |
| ACTACAGCCTATGCAGTTTC+TGG | + | chr1.1:74757332-74757351 | MS.gene80058:CDS | 45.0% | |
| AGAGAGAAGGTAGGAGGAAA+TGG | + | chr1.1:74758196-74758215 | MS.gene80058:intron | 45.0% | |
| ATGGCACATTAGAAACCAGC+TGG | - | chr1.1:74758021-74758040 | None:intergenic | 45.0% | |
| CATCCATGCATTTCACTGAG+TGG | + | chr1.1:74756867-74756886 | MS.gene80058:intron | 45.0% | |
| CGGTGATCATAAATCTCTGC+AGG | + | chr1.1:74759292-74759311 | MS.gene80058:CDS | 45.0% | |
| CTCAGAATCTCCCTCTTCAT+CGG | + | chr1.1:74759486-74759505 | MS.gene80058:CDS | 45.0% | |
| GAAGTTCCCGAGTTAAAACC+CGG | + | chr1.1:74758338-74758357 | MS.gene80058:intron | 45.0% | |
| GAGAGAAGGTAGGAGGAAAT+GGG | + | chr1.1:74758197-74758216 | MS.gene80058:intron | 45.0% | |
| GGGTACAAGCTAACTAAGCA+GGG | + | chr1.1:74758969-74758988 | MS.gene80058:CDS | 45.0% | |
| GTTCTTCTGTGTCTCCCAAA+AGG | + | chr1.1:74758947-74758966 | MS.gene80058:intron | 45.0% | |
| TCTTCTGTGTCTCCCAAAAG+GGG | + | chr1.1:74758949-74758968 | MS.gene80058:intron | 45.0% | |
| TTGTGAAGAGAGAAGGTAGG+AGG | + | chr1.1:74758190-74758209 | MS.gene80058:intron | 45.0% | |
| ! | ACTCACAGCTGATTTCTCAC+TGG | - | chr1.1:74757258-74757277 | None:intergenic | 45.0% |
| ! | GAAGCAAATCACCTCTGAGA+CGG | + | chr1.1:74759016-74759035 | MS.gene80058:CDS | 45.0% |
| ! | GAGCTTTAACCAAAGCTCTG+AGG | - | chr1.1:74756710-74756729 | None:intergenic | 45.0% |
| AAACTCGAACTGCAGGAGCA+AGG | - | chr1.1:74757725-74757744 | None:intergenic | 50.0% | |
| AACTCGAACTGCAGGAGCAA+GGG | - | chr1.1:74757724-74757743 | None:intergenic | 50.0% | |
| CCAGCTGATTGCACTTCTCT+GGG | + | chr1.1:74757647-74757666 | MS.gene80058:CDS | 50.0% | |
| CCTGAGAGATAGCAGCAAGA+GGG | - | chr1.1:74759420-74759439 | None:intergenic | 50.0% | |
| CGGCAAGGGTGAAGTCATTT+AGG | - | chr1.1:74758677-74758696 | None:intergenic | 50.0% | |
| CTGAGAGATAGCAGCAAGAG+GGG | - | chr1.1:74759419-74759438 | None:intergenic | 50.0% | |
| GATAGGTAAGCATGCTTGCG+CGG | - | chr1.1:74758697-74758716 | None:intergenic | 50.0% | |
| GGGGTACAAGCTAACTAAGC+AGG | + | chr1.1:74758968-74758987 | MS.gene80058:intron | 50.0% | |
| GGTCCACTCAGTGAAATGCA+TGG | - | chr1.1:74756873-74756892 | None:intergenic | 50.0% | |
| GTTACTCGTTCCTTTGACCC+TGG | - | chr1.1:74758655-74758674 | None:intergenic | 50.0% | |
| GTTTACTCAGGCACAGTTGC+TGG | + | chr1.1:74758441-74758460 | MS.gene80058:CDS | 50.0% | |
| TCCAGCTGATTGCACTTCTC+TGG | + | chr1.1:74757646-74757665 | MS.gene80058:CDS | 50.0% | |
| ! | TTTTCGTCCTTCCGTCTCAG+AGG | - | chr1.1:74759030-74759049 | None:intergenic | 50.0% |
| !! | CAAATCACCTCTGAGACGGA+AGG | + | chr1.1:74759020-74759039 | MS.gene80058:CDS | 50.0% |
| !! | GATGATGGAATCGATGCACC+TGG | + | chr1.1:74756684-74756703 | MS.gene80058:CDS | 50.0% |
| !! | TTAACCAAAGCTCTGAGGCC+AGG | - | chr1.1:74756705-74756724 | None:intergenic | 50.0% |
| !!! | CCTTCGTCCGGGTTTTAACT+CGG | - | chr1.1:74758348-74758367 | None:intergenic | 50.0% |
| !!! | CTTCGTCCGGGTTTTAACTC+GGG | - | chr1.1:74758347-74758366 | None:intergenic | 50.0% |
| CCCTCTTGCTGCTATCTCTC+AGG | + | chr1.1:74759417-74759436 | MS.gene80058:CDS | 55.0% | |
| CCGAGTTAAAACCCGGACGA+AGG | + | chr1.1:74758345-74758364 | MS.gene80058:intron | 55.0% | |
| GAACTGCAGGAGCAAGGGAA+AGG | - | chr1.1:74757719-74757738 | None:intergenic | 55.0% | |
| GCCTGAGAGATAGCAGCAAG+AGG | - | chr1.1:74759421-74759440 | None:intergenic | 55.0% | |
| TAAGCATGCTTGCGCGGCAA+GGG | - | chr1.1:74758691-74758710 | None:intergenic | 55.0% | |
| TGCTGCTATCTCTCAGGCAG+AGG | + | chr1.1:74759423-74759442 | MS.gene80058:CDS | 55.0% | |
| ! | ACGAATCAGGGGCGCAGATT+TGG | - | chr1.1:74756758-74756777 | None:intergenic | 55.0% |
| ! | CCCAGAGAAGTGCAATCAGC+TGG | - | chr1.1:74757650-74757669 | None:intergenic | 55.0% |
| CACAGTTGCTGGAGCTCGAG+AGG | + | chr1.1:74758452-74758471 | MS.gene80058:CDS | 60.0% | |
| GTAAGCATGCTTGCGCGGCA+AGG | - | chr1.1:74758692-74758711 | None:intergenic | 60.0% | |
| TGCACCTGGCCTCAGAGCTT+TGG | + | chr1.1:74756698-74756717 | MS.gene80058:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 74756639 | 74759516 | 74756639 | ID=MS.gene80058 |
| chr1.1 | mRNA | 74756639 | 74759516 | 74756639 | ID=MS.gene80058.t1;Parent=MS.gene80058 |
| chr1.1 | exon | 74756639 | 74756775 | 74756639 | ID=MS.gene80058.t1.exon1;Parent=MS.gene80058.t1 |
| chr1.1 | CDS | 74756639 | 74756775 | 74756639 | ID=cds.MS.gene80058.t1;Parent=MS.gene80058.t1 |
| chr1.1 | exon | 74757259 | 74757353 | 74757259 | ID=MS.gene80058.t1.exon2;Parent=MS.gene80058.t1 |
| chr1.1 | CDS | 74757259 | 74757353 | 74757259 | ID=cds.MS.gene80058.t1;Parent=MS.gene80058.t1 |
| chr1.1 | exon | 74757642 | 74757706 | 74757642 | ID=MS.gene80058.t1.exon3;Parent=MS.gene80058.t1 |
| chr1.1 | CDS | 74757642 | 74757706 | 74757642 | ID=cds.MS.gene80058.t1;Parent=MS.gene80058.t1 |
| chr1.1 | exon | 74758053 | 74758096 | 74758053 | ID=MS.gene80058.t1.exon4;Parent=MS.gene80058.t1 |
| chr1.1 | CDS | 74758053 | 74758096 | 74758053 | ID=cds.MS.gene80058.t1;Parent=MS.gene80058.t1 |
| chr1.1 | exon | 74758440 | 74758517 | 74758440 | ID=MS.gene80058.t1.exon5;Parent=MS.gene80058.t1 |
| chr1.1 | CDS | 74758440 | 74758517 | 74758440 | ID=cds.MS.gene80058.t1;Parent=MS.gene80058.t1 |
| chr1.1 | exon | 74758656 | 74758809 | 74758656 | ID=MS.gene80058.t1.exon6;Parent=MS.gene80058.t1 |
| chr1.1 | CDS | 74758656 | 74758809 | 74758656 | ID=cds.MS.gene80058.t1;Parent=MS.gene80058.t1 |
| chr1.1 | exon | 74758969 | 74759142 | 74758969 | ID=MS.gene80058.t1.exon7;Parent=MS.gene80058.t1 |
| chr1.1 | CDS | 74758969 | 74759142 | 74758969 | ID=cds.MS.gene80058.t1;Parent=MS.gene80058.t1 |
| chr1.1 | exon | 74759260 | 74759322 | 74759260 | ID=MS.gene80058.t1.exon8;Parent=MS.gene80058.t1 |
| chr1.1 | CDS | 74759260 | 74759322 | 74759260 | ID=cds.MS.gene80058.t1;Parent=MS.gene80058.t1 |
| chr1.1 | exon | 74759406 | 74759516 | 74759406 | ID=MS.gene80058.t1.exon9;Parent=MS.gene80058.t1 |
| chr1.1 | CDS | 74759406 | 74759516 | 74759406 | ID=cds.MS.gene80058.t1;Parent=MS.gene80058.t1 |
| Gene Sequence |
| Protein sequence |
