AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80159

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80159.t1 MTR_3g105610 93.197 735 46 1 1 731 256 990 0.0 1396
MS.gene80159.t1 MTR_3g105595 83.174 731 116 3 1 727 141 868 0.0 1219
MS.gene80159.t1 MTR_8g073210 39.557 632 354 12 1 621 248 862 5.84e-141 437
MS.gene80159.t1 MTR_3g115910 37.189 683 393 15 1 674 247 902 2.36e-140 435
MS.gene80159.t1 MTR_3g115910 37.189 683 393 15 1 674 292 947 3.83e-140 436
MS.gene80159.t1 MTR_8g073490 37.229 693 392 17 1 671 247 918 2.25e-135 423
MS.gene80159.t1 MTR_2g088450 37.959 627 366 12 1 620 154 764 2.73e-134 417
MS.gene80159.t1 MTR_2g088450 37.959 627 366 12 1 620 187 797 6.78e-134 417
MS.gene80159.t1 MTR_2g088450 37.959 627 366 12 1 620 252 862 3.31e-133 417
MS.gene80159.t1 MTR_5g024350 35.918 632 380 14 1 622 247 863 5.74e-128 404
MS.gene80159.t1 MTR_5g024350 35.918 632 380 14 1 622 279 895 1.50e-127 404
MS.gene80159.t1 MTR_4g087925 34.916 653 371 13 1 647 266 870 3.29e-121 385
MS.gene80159.t1 MTR_2g088430 34.499 629 387 13 1 620 245 857 9.52e-120 381
MS.gene80159.t1 MTR_2g015270 33.286 700 390 21 1 676 263 909 7.76e-113 366
MS.gene80159.t1 MTR_3g115910 37.660 547 312 11 1 538 247 773 6.35e-112 357
MS.gene80159.t1 MTR_5g059920 34.707 631 350 16 1 617 264 846 8.65e-106 344
MS.gene80159.t1 MTR_5g059900 34.135 624 348 15 1 617 170 737 3.29e-100 325
MS.gene80159.t1 MTR_2g015260 30.823 717 388 21 1 696 72 701 2.99e-98 319
MS.gene80159.t1 MTR_0018s0240 32.013 631 348 16 1 617 191 754 2.17e-94 311
MS.gene80159.t1 MTR_2g088450 39.693 456 257 9 1 450 252 695 2.36e-94 308
MS.gene80159.t1 MTR_2g015290 31.746 630 355 21 1 620 259 823 1.48e-90 304
MS.gene80159.t1 MTR_0018s0230 30.684 629 357 14 1 617 169 730 4.46e-89 297
MS.gene80159.t1 MTR_2g015310 31.062 631 357 20 1 622 261 822 1.11e-88 298
MS.gene80159.t1 MTR_5g059920 33.996 553 310 14 1 547 264 767 5.72e-88 293
MS.gene80159.t1 MTR_2g015280 30.503 636 358 18 1 628 258 817 1.47e-86 293
MS.gene80159.t1 MTR_6g045087 39.604 404 225 9 222 611 39 437 1.03e-82 271
MS.gene80159.t1 MTR_8g073210 37.226 411 236 9 1 401 248 646 4.45e-76 258
MS.gene80159.t1 MTR_3g115910 36.524 397 228 9 1 389 247 627 6.30e-76 258
MS.gene80159.t1 MTR_3g115910 36.524 397 228 9 1 389 292 672 1.24e-75 258
MS.gene80159.t1 MTR_2g088450 37.284 405 236 9 1 399 154 546 2.05e-74 251
MS.gene80159.t1 MTR_2g088450 37.284 405 236 9 1 399 252 644 1.72e-73 251
MS.gene80159.t1 MTR_0018s0230 29.381 582 333 16 1 573 169 681 9.24e-72 247
MS.gene80159.t1 MTR_2g088450 36.658 401 236 9 1 395 154 542 7.43e-71 241
MS.gene80159.t1 MTR_8g073210 36.341 399 232 9 1 389 248 634 1.32e-70 243
MS.gene80159.t1 MTR_5g060330 34.295 312 165 9 1 307 170 446 3.43e-42 163
MS.gene80159.t1 MTR_5g060330 35.333 150 82 6 500 637 466 612 3.69e-15 79.7
MS.gene80159.t1 MTR_8g073210 31.475 305 188 8 1 295 248 541 7.86e-35 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80159.t1 AT2G29120 49.502 703 297 17 1 688 253 912 0.0 651
MS.gene80159.t1 AT2G29110 50.723 692 297 17 1 688 244 895 0.0 635
MS.gene80159.t1 AT2G29110 50.723 692 297 17 1 688 245 896 0.0 634
MS.gene80159.t1 AT2G29100 48.143 700 320 15 1 693 241 904 0.0 619
MS.gene80159.t1 AT2G29100 48.143 700 320 15 1 693 243 906 0.0 619
MS.gene80159.t1 AT2G24720 50.420 595 270 10 1 589 246 821 0.0 586
MS.gene80159.t1 AT5G27100 46.536 664 305 14 1 652 246 871 0.0 583
MS.gene80159.t1 AT2G24710 47.179 638 308 10 1 627 245 864 0.0 573
MS.gene80159.t1 AT2G24710 47.179 638 308 10 1 627 269 888 0.0 573
MS.gene80159.t1 AT5G11210 44.745 628 320 9 1 622 193 799 0.0 552
MS.gene80159.t1 AT5G11210 45.048 626 321 9 1 622 251 857 0.0 552
MS.gene80159.t1 AT5G11210 44.745 628 320 9 1 622 169 775 0.0 552
MS.gene80159.t1 AT5G11180 44.410 644 334 11 1 635 250 878 0.0 547
MS.gene80159.t1 AT4G31710 45.696 639 299 13 1 627 246 848 5.26e-174 522
MS.gene80159.t1 AT2G24710 48.435 543 258 8 1 539 269 793 4.60e-173 517
MS.gene80159.t1 AT4G31710 44.757 639 298 13 1 627 269 864 7.92e-169 509
MS.gene80159.t1 AT5G11210 44.547 541 279 7 1 538 169 691 1.04e-159 479
MS.gene80159.t1 AT5G11210 44.547 541 279 7 1 538 169 691 1.04e-159 479
MS.gene80159.t1 AT5G11210 44.547 541 279 7 1 538 169 691 1.09e-159 479
MS.gene80159.t1 AT5G11210 44.547 541 279 7 1 538 177 699 1.27e-159 479
MS.gene80159.t1 AT5G11210 44.199 543 278 7 1 538 251 773 6.53e-159 480
MS.gene80159.t1 AT5G11210 44.199 543 278 7 1 538 251 773 6.53e-159 480
MS.gene80159.t1 AT5G11210 44.199 543 278 7 1 538 251 773 8.00e-159 479
MS.gene80159.t1 AT5G11180 39.813 643 304 15 1 635 250 817 2.28e-144 446
MS.gene80159.t1 AT1G42540 37.482 691 380 16 1 665 245 909 1.78e-143 444
MS.gene80159.t1 AT1G42540 37.482 691 380 16 1 665 245 909 1.78e-143 444
MS.gene80159.t1 AT1G42540 37.482 691 380 16 1 665 245 909 1.78e-143 444
MS.gene80159.t1 AT4G35290 36.873 678 386 19 1 659 247 901 2.53e-132 414
MS.gene80159.t1 AT4G35290 36.873 678 386 19 1 659 247 901 2.53e-132 414
MS.gene80159.t1 AT4G35290 36.873 678 386 19 1 659 247 901 2.53e-132 414
MS.gene80159.t1 AT4G35290 36.873 678 386 19 1 659 247 901 2.53e-132 414
MS.gene80159.t1 AT4G35290 36.873 678 386 19 1 659 247 901 2.53e-132 414
MS.gene80159.t1 AT2G17260 38.647 621 349 18 1 611 251 849 1.68e-128 404
MS.gene80159.t1 AT3G51480 34.161 685 409 16 1 675 154 806 3.81e-124 390
MS.gene80159.t1 AT1G05200 34.762 630 387 10 1 623 275 887 6.14e-124 393
MS.gene80159.t1 AT1G05200 34.762 630 387 10 1 623 275 887 6.14e-124 393
MS.gene80159.t1 AT1G05200 34.762 630 387 10 1 623 275 887 6.14e-124 393
MS.gene80159.t1 AT3G51480 34.161 685 409 16 1 675 244 896 3.81e-123 390
MS.gene80159.t1 AT3G51480 34.161 685 409 16 1 675 244 896 3.81e-123 390
MS.gene80159.t1 AT2G32390 35.975 631 384 11 1 623 160 778 3.09e-122 386
MS.gene80159.t1 AT2G32390 35.975 631 384 11 1 623 204 822 8.93e-122 386
MS.gene80159.t1 AT2G32390 36.133 631 383 11 1 623 262 880 1.33e-120 384
MS.gene80159.t1 AT2G32400 33.523 704 418 18 1 683 245 919 1.70e-112 362
MS.gene80159.t1 AT3G07520 35.514 642 330 17 1 627 260 832 9.48e-111 356
MS.gene80159.t1 AT5G11210 49.853 341 165 5 284 622 13 349 4.20e-109 338
MS.gene80159.t1 AT5G48410 34.429 639 334 18 1 627 255 820 4.62e-106 343
MS.gene80159.t1 AT4G35290 37.409 548 310 15 1 538 247 771 5.16e-106 341
MS.gene80159.t1 AT5G48400 33.333 639 346 19 1 627 253 823 1.86e-105 342
MS.gene80159.t1 AT1G05200 34.545 550 336 10 1 543 275 807 6.05e-103 335
MS.gene80159.t1 AT1G05200 34.545 550 336 10 1 543 275 807 6.05e-103 335
MS.gene80159.t1 AT3G51480 34.672 548 321 13 1 538 244 764 3.75e-98 320
MS.gene80159.t1 AT5G48410 35.273 550 274 17 1 538 255 734 1.37e-92 305
MS.gene80159.t1 AT5G48400 34.364 550 284 18 1 538 253 737 1.60e-91 302
MS.gene80159.t1 AT5G48410 32.707 639 318 19 1 627 255 793 3.99e-90 300
MS.gene80159.t1 AT5G48410 32.551 639 315 19 1 627 255 789 2.24e-88 296
MS.gene80159.t1 AT3G04110 29.760 625 344 19 1 611 244 787 4.09e-79 270
MS.gene80159.t1 AT2G32390 35.904 415 250 9 1 408 262 667 5.81e-78 264
MS.gene80159.t1 AT1G42540 36.715 414 227 11 1 399 245 638 3.14e-77 261
MS.gene80159.t1 AT2G32390 34.951 412 252 9 1 405 262 664 6.61e-75 256
MS.gene80159.t1 AT2G32390 34.951 412 252 9 1 405 262 664 6.61e-75 256
MS.gene80159.t1 AT1G05200 33.659 410 252 8 1 404 275 670 2.46e-71 246
MS.gene80159.t1 AT2G32390 34.509 397 244 9 1 390 262 649 8.52e-70 241
MS.gene80159.t1 AT1G05200 33.081 396 245 8 1 390 275 656 2.51e-66 232
MS.gene80159.t1 AT3G04110 28.967 542 300 16 1 538 244 704 3.45e-65 231
MS.gene80159.t1 AT3G04110 27.200 625 332 20 1 611 244 759 5.70e-62 222

Find 156 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCACTCAACTTTATTA+TGG 0.166418 3.4:-92248561 MS.gene80159:CDS
TTTGATTCAGTTTGACTAAA+TGG 0.183703 3.4:+92246016 None:intergenic
TGAAGGGTTTGTTAGAAATT+TGG 0.183990 3.4:-92248910 MS.gene80159:CDS
TTGTTAAACACTAGATTTAA+TGG 0.210689 3.4:-92249041 MS.gene80159:CDS
GGAATTGGAGCCACTAAATT+TGG 0.217370 3.4:-92249155 MS.gene80159:CDS
GTCTTGGCCTTGAAAGCTTC+TGG 0.218697 3.4:-92246315 MS.gene80159:CDS
TGCACAAAATGGTGAGAAAT+TGG 0.227683 3.4:-92249072 MS.gene80159:CDS
CCTTATCATGATGATGATTT+AGG 0.232260 3.4:-92246079 MS.gene80159:CDS
CCCTATGTTAAGCAATTTCT+TGG 0.234449 3.4:-92246937 MS.gene80159:CDS
CAAGATTTGTGGTGGTTATA+TGG 0.248414 3.4:-92247236 MS.gene80159:CDS
AGCCACTCACATGGGATCTT+TGG 0.254131 3.4:-92247967 MS.gene80159:CDS
CAAAGATTAGGAGTGCTAAT+AGG 0.255670 3.4:+92246263 None:intergenic
TATTCATTGGATTTGTTGTA+TGG 0.275412 3.4:-92247922 MS.gene80159:CDS
TTGACTAAAATCTCCATAAA+AGG 0.279640 3.4:+92245988 None:intergenic
GCTTGTTCATTTGTATTCAT+TGG 0.284251 3.4:-92247935 MS.gene80159:CDS
TGCCTCCTTGAGTCACATTT+AGG 0.292586 3.4:+92246416 None:intergenic
GGATGGGAAATTCCTACTAT+TGG 0.294555 3.4:-92248786 MS.gene80159:CDS
AGATTTAAAACGGGTGGTTT+TGG 0.295033 3.4:-92246871 MS.gene80159:CDS
GCTACCAGAGGTGAACCTTT+TGG 0.295492 3.4:+92246457 None:intergenic
TAAGATGAATGTTGGCTATC+TGG 0.299440 3.4:-92247103 MS.gene80159:CDS
AAGAAAACAGAAAATATAAA+TGG 0.304802 3.4:-92246115 MS.gene80159:CDS
TTGTTCACAGGGGAAACTTC+TGG 0.310514 3.4:+92245932 None:intergenic
ATCAGATTGGCACAAGCTTA+TGG 0.317813 3.4:-92247853 MS.gene80159:CDS
CGTCTCCATATTGAATTACT+TGG 0.322004 3.4:+92246193 None:intergenic
AAAAGCTCATTACATTCTTC+AGG 0.333198 3.4:+92247009 None:intergenic
ATTAGAGGAAATTTCTGTAT+TGG 0.334978 3.4:+92246342 None:intergenic
TGATCACTCAACTTTATTAT+GGG 0.343974 3.4:-92248560 MS.gene80159:CDS
TTGAGTGATCAAATCATTGT+AGG 0.359138 3.4:+92248572 None:intergenic
AAGGCCAAGACTATTATTAG+AGG 0.373292 3.4:+92246327 None:intergenic
TGGAAGGAGTATTGGGTGTT+AGG 0.378795 3.4:-92249337 MS.gene80159:CDS
CGTTGTTTATTCTATGTTCA+AGG 0.381373 3.4:+92247897 None:intergenic
GCCACTCACATGGGATCTTT+GGG 0.382157 3.4:-92247966 MS.gene80159:CDS
TCTTGGCCTTGAAAGCTTCT+GGG 0.382812 3.4:-92246314 MS.gene80159:CDS
AAGTAATGAGCTGAGATTCT+TGG 0.388859 3.4:+92247040 None:intergenic
CCATGTGAGTGGCTTCAAAA+AGG 0.389028 3.4:+92247976 None:intergenic
CTCTGGTAGCAGACATTTCA+AGG 0.390581 3.4:-92246444 MS.gene80159:CDS
AAAGATTAGGAGTGCTAATA+GGG 0.396128 3.4:+92246264 None:intergenic
ACTAGATTTAATGGTCTTAG+TGG 0.396942 3.4:-92249032 MS.gene80159:CDS
TACATCAGCACAAACACATT+TGG 0.398481 3.4:-92246228 MS.gene80159:CDS
ATAATCCAAGTAATTCAATA+TGG 0.398624 3.4:-92246198 MS.gene80159:CDS
TGATGAGTCAAGGCTATGTT+TGG 0.402077 3.4:-92249421 MS.gene80159:CDS
AAAGACCCCAGAAGCTTTCA+AGG 0.404234 3.4:+92246308 None:intergenic
TCAGAACTTTGATGCGGTGG+TGG 0.404424 3.4:-92248116 MS.gene80159:intron
GATGGGAAATTCCTACTATT+GGG 0.406766 3.4:-92248785 MS.gene80159:CDS
CTCATTGTAACCAAATTTAG+TGG 0.408208 3.4:+92249145 None:intergenic
AGTGGTGATTTCAATGTTGT+TGG 0.410007 3.4:-92249014 MS.gene80159:CDS
TCATCTTATTCTTTAAAAGT+TGG 0.411599 3.4:+92247118 None:intergenic
GCTATTGAGGAAGTTGGAAT+TGG 0.411599 3.4:-92249170 MS.gene80159:CDS
GAATCAATGGAAGGAGTATT+GGG 0.414833 3.4:-92249344 MS.gene80159:CDS
AGCAAAGACCATAGTTGAAA+AGG 0.419810 3.4:+92247826 None:intergenic
GTAGGAATTTCCCATCCCTT+TGG 0.420382 3.4:+92248792 None:intergenic
TTGGATAGCAACCGATAGTA+TGG 0.420520 3.4:-92249402 MS.gene80159:CDS
ATTAGCACTCCTAATCTTTG+TGG 0.423040 3.4:-92246260 MS.gene80159:CDS
AAGATTTGTGGTGGTTATAT+GGG 0.425424 3.4:-92247235 MS.gene80159:CDS
TTCATAAAAGGAAGTGCAAA+TGG 0.428259 3.4:-92246988 MS.gene80159:CDS
GTTAGAAATTTGGACACAAA+AGG 0.435100 3.4:-92248900 MS.gene80159:CDS
GGAATCAATGGAAGGAGTAT+TGG 0.436571 3.4:-92249345 MS.gene80159:CDS
ACAATGCCATACACAGAATC+TGG 0.438361 3.4:-92248049 MS.gene80159:CDS
CTAAATGGACTAGGTGGATA+AGG 0.447867 3.4:+92246031 None:intergenic
GCAAATGGAACAAACTCATA+TGG 0.447896 3.4:+92248621 None:intergenic
GGTTGAGCCAAGATTTAAAA+CGG 0.451460 3.4:-92246881 MS.gene80159:CDS
AACTCATATGGTAATGCATA+AGG 0.456420 3.4:+92248633 None:intergenic
TCACCATCAGGCTTTGCAAA+TGG 0.456931 3.4:+92248606 None:intergenic
TAGATGATCTCGTGTTGCTT+GGG 0.457998 3.4:+92245895 None:intergenic
ATAGATGATCTCGTGTTGCT+TGG 0.460591 3.4:+92245894 None:intergenic
AAATTTGTGTCAACAAGTGT+TGG 0.461667 3.4:+92249242 None:intergenic
TGCATCAGCAATGGCTATTG+AGG 0.462173 3.4:-92249183 MS.gene80159:CDS
GCACAAAATGGTGAGAAATT+GGG 0.464067 3.4:-92249071 MS.gene80159:CDS
TTAAAGAATAAGATGAATGT+TGG 0.464941 3.4:-92247111 MS.gene80159:CDS
CTAGGTGGATAAGGTGTACC+TGG 0.468506 3.4:+92246040 None:intergenic
TTCTTCTTCAAAGTATGTCA+TGG 0.471946 3.4:-92246902 MS.gene80159:CDS
TATGAAATAATTAATGTGAT+TGG 0.474278 3.4:-92248969 MS.gene80159:CDS
CAGAACTTTGATGCGGTGGT+GGG 0.476644 3.4:-92248115 MS.gene80159:CDS
TTATAATGTGAGGGAATCAA+TGG 0.479009 3.4:-92249357 MS.gene80159:CDS
GTCACACCAGATTCTGTGTA+TGG 0.482816 3.4:+92248043 None:intergenic
CCAAGAAATTGCTTAACATA+GGG 0.484014 3.4:+92246937 None:intergenic
GAAACGTTACCACAAAGATT+AGG 0.484191 3.4:+92246251 None:intergenic
TTAATTTCACAGTTGTTCAC+AGG 0.488033 3.4:+92245920 None:intergenic
CCTAAATCATCATCATGATA+AGG 0.490096 3.4:+92246079 None:intergenic
CTTGGGGTAATCATGTGGCC+AGG 0.494176 3.4:-92248831 MS.gene80159:CDS
TGGTTAACGTCTGTAATAGC+TGG 0.497231 3.4:+92247138 None:intergenic
TCCAAGAAATTGCTTAACAT+AGG 0.508982 3.4:+92246936 None:intergenic
ATTCATTGGATTTGTTGTAT+GGG 0.509809 3.4:-92247921 MS.gene80159:CDS
ATTTCCTCTAATAATAGTCT+TGG 0.512414 3.4:-92246331 MS.gene80159:CDS
TGAACTCTATTCCAAAGGGA+TGG 0.512593 3.4:-92248803 MS.gene80159:CDS
GTTCCCGCCATCTCACCATC+AGG 0.517404 3.4:+92248594 None:intergenic
GAACTTTGATGCGGTGGTGG+GGG 0.518222 3.4:-92248113 MS.gene80159:CDS
TGATGATTTAGGTGCGGTAG+AGG 0.522774 3.4:-92246068 MS.gene80159:CDS
GTTGAGCCAAGATTTAAAAC+GGG 0.524047 3.4:-92246880 MS.gene80159:CDS
GAGTAACTTGGCAAGATTTG+TGG 0.524831 3.4:-92247247 MS.gene80159:CDS
GGAATAGAGTTCATATCCCC+TGG 0.528712 3.4:+92248813 None:intergenic
CTCAACTTCTTCCCAATAGT+AGG 0.530247 3.4:+92248774 None:intergenic
GACGAATTGAAGTCATGGTT+AGG 0.530841 3.4:-92246174 MS.gene80159:CDS
CTACTATTGGGAAGAAGTTG+AGG 0.532909 3.4:-92248773 MS.gene80159:CDS
TAATTAATGTGATTGGTGAT+GGG 0.533125 3.4:-92248962 MS.gene80159:CDS
AATTTGTAGGCATTCCCAAA+AGG 0.535074 3.4:-92246472 MS.gene80159:intron
AGAACTTTGATGCGGTGGTG+GGG 0.537141 3.4:-92248114 MS.gene80159:CDS
GATCACTCAACTTTATTATG+GGG 0.541790 3.4:-92248559 MS.gene80159:intron
ATAATTAATGTGATTGGTGA+TGG 0.544016 3.4:-92248963 MS.gene80159:CDS
GGTGCGGTAGAGGCCTCTCC+AGG 0.545355 3.4:-92246058 MS.gene80159:CDS
TCAGTTTGACTAAATGGACT+AGG 0.546319 3.4:+92246022 None:intergenic
TTCCCTCACATTATAACTCA+AGG 0.547803 3.4:+92249364 None:intergenic
TTCCTTGAGTTATAATGTGA+GGG 0.548152 3.4:-92249366 MS.gene80159:CDS
GAACTCTATTCCAAAGGGAT+GGG 0.551466 3.4:-92248802 MS.gene80159:CDS
GGTGATTTCAATGTTGTTGG+TGG 0.552700 3.4:-92249011 MS.gene80159:CDS
GATATGAACTCTATTCCAAA+GGG 0.552824 3.4:-92248807 MS.gene80159:CDS
GCAATGGCTATTGAGGAAGT+TGG 0.553862 3.4:-92249176 MS.gene80159:CDS
ATTGGGAAGAAGTTGAGGAT+AGG 0.555492 3.4:-92248768 MS.gene80159:CDS
GAATAAATTAGCCATACTAT+CGG 0.555646 3.4:+92249391 None:intergenic
TGAGAACAATTGAGAATGCA+TGG 0.556111 3.4:-92246390 MS.gene80159:CDS
GGACCAACCTCTCATCAGAT+TGG 0.557408 3.4:-92247866 MS.gene80159:CDS
CTTGGCCTTGAAAGCTTCTG+GGG 0.560766 3.4:-92246313 MS.gene80159:CDS
GTGCCAATCTGATGAGAGGT+TGG 0.561854 3.4:+92247863 None:intergenic
ATTCCTTGAGTTATAATGTG+AGG 0.565592 3.4:-92249367 MS.gene80159:CDS
TTGGGGTAATCATGTGGCCA+GGG 0.567541 3.4:-92248830 MS.gene80159:CDS
ATTCCCAAAAGGTTCACCTC+TGG 0.569784 3.4:-92246461 MS.gene80159:CDS
AAGCCTGATGGTGAGATGGC+GGG 0.571630 3.4:-92248597 MS.gene80159:CDS
GTTCCATTTGCAAAGCCTGA+TGG 0.580207 3.4:-92248609 MS.gene80159:CDS
CATTGATGTCTTCAAAGCTG+TGG 0.588475 3.4:-92248667 MS.gene80159:CDS
CATTGTGAAATCAACATAGT+CGG 0.591849 3.4:+92248066 None:intergenic
AGAGAGAGTAGTGAGTAACT+TGG 0.600457 3.4:-92247259 MS.gene80159:CDS
GTGATTTCAATGTTGTTGGT+GGG 0.601031 3.4:-92249010 MS.gene80159:CDS
ATGAATGTTGGCTATCTGGA+AGG 0.602535 3.4:-92247099 MS.gene80159:CDS
ACTAATTCAACACTAGCCAC+TGG 0.602738 3.4:-92248696 MS.gene80159:CDS
AACATAGGGAACTTCATCAA+AGG 0.603609 3.4:+92246951 None:intergenic
TGCTACAATTGCATCAGCAA+TGG 0.603696 3.4:-92249192 MS.gene80159:CDS
ATGGAGACGAATTGAAGTCA+TGG 0.605611 3.4:-92246179 MS.gene80159:CDS
TAATTTCACAGTTGTTCACA+GGG 0.607703 3.4:+92245921 None:intergenic
GGATCAGAACTTTGATGCGG+TGG 0.608343 3.4:-92248119 MS.gene80159:intron
AATTAATGTGATTGGTGATG+GGG 0.612269 3.4:-92248961 MS.gene80159:CDS
GGATATGAACTCTATTCCAA+AGG 0.613437 3.4:-92248808 MS.gene80159:CDS
CAAATTGGGATGATGAGTCA+AGG 0.617011 3.4:-92249431 None:intergenic
GCAATCCTAAATGTGACTCA+AGG 0.617571 3.4:-92246421 MS.gene80159:CDS
TGCAAAGCCTGATGGTGAGA+TGG 0.620042 3.4:-92248601 MS.gene80159:CDS
TGGGGTAATCATGTGGCCAG+GGG 0.623869 3.4:-92248829 MS.gene80159:CDS
TTTCTAACAAACCCTTCATG+TGG 0.624401 3.4:+92248915 None:intergenic
CACAGAATCTGGTGTGACAA+TGG 0.627498 3.4:-92248038 MS.gene80159:CDS
AATGTGAGGGAATCAATGGA+AGG 0.632436 3.4:-92249353 MS.gene80159:CDS
TGGATAAGGTGTACCTGGAG+AGG 0.633371 3.4:+92246045 None:intergenic
ATGATCTTGGGGTAATCATG+TGG 0.635275 3.4:-92248836 MS.gene80159:CDS
GAGCCAAGATTTAAAACGGG+TGG 0.636705 3.4:-92246877 MS.gene80159:CDS
AGAATAAACAACGATTTCAG+AGG 0.640862 3.4:-92247887 MS.gene80159:CDS
TGATGTCTTCAAAGCTGTGG+TGG 0.644862 3.4:-92248664 MS.gene80159:CDS
GTTTGACTAAATGGACTAGG+TGG 0.645627 3.4:+92246025 None:intergenic
ACCCAAAGATCCCATGTGAG+TGG 0.646306 3.4:+92247965 None:intergenic
TCATGATGATGATTTAGGTG+CGG 0.658204 3.4:-92246074 MS.gene80159:CDS
TAACTTGGCAAGATTTGTGG+TGG 0.662110 3.4:-92247244 MS.gene80159:CDS
ATAAAAGGAAGTGCAAATGG+TGG 0.667432 3.4:-92246985 MS.gene80159:CDS
ATCCTAAATGTGACTCAAGG+AGG 0.671234 3.4:-92246418 MS.gene80159:CDS
TTTGGATCAGAACTTTGATG+CGG 0.679944 3.4:-92248122 MS.gene80159:intron
TCTGGTAGCAGACATTTCAA+GGG 0.681450 3.4:-92246443 MS.gene80159:CDS
GACATCAATGCAGAAGCCAG+TGG 0.681497 3.4:+92248680 None:intergenic
AAAGCCTGATGGTGAGATGG+CGG 0.684105 3.4:-92248598 MS.gene80159:CDS
CTTGAAATGTCTGCTACCAG+AGG 0.702261 3.4:+92246445 None:intergenic
GCTTGTGCCAATCTGATGAG+AGG 0.718185 3.4:+92247859 None:intergenic
AATTTCACAGTTGTTCACAG+GGG 0.729956 3.4:+92245922 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGACATTTTATTATTTAA+TGG + chr3.4:92246991-92247010 None:intergenic 10.0%
!! AAGAAAACAGAAAATATAAA+TGG - chr3.4:92249199-92249218 MS.gene80159:CDS 15.0%
!! AATTATGATGACATTATATT+AGG + chr3.4:92248507-92248526 None:intergenic 15.0%
!! ATTATGATGACATTATATTA+GGG + chr3.4:92248506-92248525 None:intergenic 15.0%
!! TATGAAATAATTAATGTGAT+TGG - chr3.4:92246345-92246364 MS.gene80159:CDS 15.0%
!!! TTAAAAGTATACTAAGAATT+TGG + chr3.4:92246853-92246872 None:intergenic 15.0%
!!! TTGTTTATTTATTTCTCATT+TGG - chr3.4:92248707-92248726 MS.gene80159:CDS 15.0%
!! ATAATCCAAGTAATTCAATA+TGG - chr3.4:92249116-92249135 MS.gene80159:CDS 20.0%
!! TATAGAAATCTAGAGAAAAT+AGG - chr3.4:92247903-92247922 MS.gene80159:CDS 20.0%
!! TATGAAATATGTGAACTTTA+TGG - chr3.4:92246875-92246894 MS.gene80159:CDS 20.0%
!! TGAAATAACCTAAATATCAT+AGG - chr3.4:92247150-92247169 MS.gene80159:CDS 20.0%
!! TTAAAGAATAAGATGAATGT+TGG - chr3.4:92248203-92248222 MS.gene80159:intron 20.0%
!! TTGTTAAACACTAGATTTAA+TGG - chr3.4:92246273-92246292 MS.gene80159:CDS 20.0%
!!! ATACCAAAATTTTCAAAAGT+AGG + chr3.4:92246222-92246241 None:intergenic 20.0%
!!! ATTTGAACATTTTTGGAATA+TGG - chr3.4:92246091-92246110 MS.gene80159:CDS 20.0%
!!! TCATCTTATTCTTTAAAAGT+TGG + chr3.4:92248199-92248218 None:intergenic 20.0%
!!! TTTGAACATTTTTGGAATAT+GGG - chr3.4:92246092-92246111 MS.gene80159:CDS 20.0%
! AACTTATACATGAACACTTA+TGG + chr3.4:92247714-92247733 None:intergenic 25.0%
! AAGTTATTCCATCACAAATT+AGG - chr3.4:92247729-92247748 MS.gene80159:intron 25.0%
! AATCTAGAGAAAATAGGTTA+TGG - chr3.4:92247909-92247928 MS.gene80159:CDS 25.0%
! AGTATCACAAGTATTTACAT+CGG - chr3.4:92247966-92247985 MS.gene80159:CDS 25.0%
! AGTTTATCACAAACCATATT+TGG + chr3.4:92247782-92247801 None:intergenic 25.0%
! ATAATTAATGTGATTGGTGA+TGG - chr3.4:92246351-92246370 MS.gene80159:CDS 25.0%
! ATGCATGAAATTGTAAGAAA+TGG - chr3.4:92246926-92246945 MS.gene80159:CDS 25.0%
! ATTAGAGGAAATTTCTGTAT+TGG + chr3.4:92248975-92248994 None:intergenic 25.0%
! ATTTCCTCTAATAATAGTCT+TGG - chr3.4:92248983-92249002 MS.gene80159:CDS 25.0%
! CATTCACATATATAAGATCA+GGG + chr3.4:92246805-92246824 None:intergenic 25.0%
! GAACTTTATGGTTTCTTTAT+TGG - chr3.4:92246887-92246906 MS.gene80159:CDS 25.0%
! GAATAAATTAGCCATACTAT+CGG + chr3.4:92245926-92245945 None:intergenic 25.0%
! TCACAAATTAGGAAAGATTT+AGG - chr3.4:92247740-92247759 MS.gene80159:intron 25.0%
! TCATTCACATATATAAGATC+AGG + chr3.4:92246806-92246825 None:intergenic 25.0%
! TGATCACTCAACTTTATTAT+GGG - chr3.4:92246754-92246773 MS.gene80159:intron 25.0%
! TTGACTAAAATCTCCATAAA+AGG + chr3.4:92249329-92249348 None:intergenic 25.0%
! TTGATCACTCAACTTTATTA+TGG - chr3.4:92246753-92246772 MS.gene80159:intron 25.0%
! TTTGATTCAGTTTGACTAAA+TGG + chr3.4:92249301-92249320 None:intergenic 25.0%
!! AAATCTTTCCTAATTTGTGA+TGG + chr3.4:92247740-92247759 None:intergenic 25.0%
!! AGTATGTTAGGTTTGAATTT+TGG + chr3.4:92248549-92248568 None:intergenic 25.0%
!! CTACTTCTAAAAATGATCTT+GGG - chr3.4:92246466-92246485 MS.gene80159:CDS 25.0%
!! GAATCAAATGTTTCCTTTTA+TGG - chr3.4:92249313-92249332 MS.gene80159:CDS 25.0%
!! GACACAAATTTGAACATTTT+TGG - chr3.4:92246084-92246103 MS.gene80159:CDS 25.0%
!! TAATTAATGTGATTGGTGAT+GGG - chr3.4:92246352-92246371 MS.gene80159:CDS 25.0%
!! TACTTCTAAAAATGATCTTG+GGG - chr3.4:92246467-92246486 MS.gene80159:intron 25.0%
!! TCTACTTCTAAAAATGATCT+TGG - chr3.4:92246465-92246484 MS.gene80159:CDS 25.0%
!! TGTAATGAGCTTTTCATAAA+AGG - chr3.4:92248314-92248333 MS.gene80159:intron 25.0%
!! TTTTAAACTCTCAAAGAGTA+GGG + chr3.4:92246962-92246981 None:intergenic 25.0%
!! TTTTAGTCAAAGCATAGAAA+TGG - chr3.4:92249339-92249358 MS.gene80159:CDS 25.0%
!! TTTTTAAACTCTCAAAGAGT+AGG + chr3.4:92246963-92246982 None:intergenic 25.0%
!!! AATTTTGGTATTGCACAAAA+TGG - chr3.4:92246231-92246250 MS.gene80159:CDS 25.0%
!!! ATGCCTACTTTTGAAAATTT+TGG - chr3.4:92246216-92246235 MS.gene80159:CDS 25.0%
!!! ATTCATTGGATTTGTTGTAT+GGG - chr3.4:92247393-92247412 MS.gene80159:intron 25.0%
!!! TATTCATTGGATTTGTTGTA+TGG - chr3.4:92247392-92247411 MS.gene80159:intron 25.0%
!!! TTTTGTTTATGGAATCTTGA+AGG - chr3.4:92248241-92248260 MS.gene80159:intron 25.0%
AAAAGCTCATTACATTCTTC+AGG + chr3.4:92248308-92248327 None:intergenic 30.0%
AAATTTGTGTCAACAAGTGT+TGG + chr3.4:92246075-92246094 None:intergenic 30.0%
AAGATTTGTGGTGGTTATAT+GGG - chr3.4:92248079-92248098 MS.gene80159:CDS 30.0%
ACAACAGAAAGAAAAATGCA+TGG - chr3.4:92247314-92247333 MS.gene80159:intron 30.0%
ACTCATTGAATCAGTATGTT+AGG + chr3.4:92248561-92248580 None:intergenic 30.0%
AGAATAAACAACGATTTCAG+AGG - chr3.4:92247427-92247446 MS.gene80159:intron 30.0%
ATTCCTTGAGTTATAATGTG+AGG - chr3.4:92245947-92245966 MS.gene80159:CDS 30.0%
CAACAGAAAGAAAAATGCAT+GGG - chr3.4:92247315-92247334 MS.gene80159:intron 30.0%
CATTGTGAAATCAACATAGT+CGG + chr3.4:92247251-92247270 None:intergenic 30.0%
CCAAGAAATTGCTTAACATA+GGG + chr3.4:92248380-92248399 None:intergenic 30.0%
CCTAAATCATCATCATGATA+AGG + chr3.4:92249238-92249257 None:intergenic 30.0%
CGTTGTTTATTCTATGTTCA+AGG + chr3.4:92247420-92247439 None:intergenic 30.0%
CTCATTGTAACCAAATTTAG+TGG + chr3.4:92246172-92246191 None:intergenic 30.0%
CTTCTAGGTTATAGTTCAAT+TGG + chr3.4:92248749-92248768 None:intergenic 30.0%
GATATGAACTCTATTCCAAA+GGG - chr3.4:92246507-92246526 MS.gene80159:intron 30.0%
GATCACTCAACTTTATTATG+GGG - chr3.4:92246755-92246774 MS.gene80159:intron 30.0%
GCTTGTTCATTTGTATTCAT+TGG - chr3.4:92247379-92247398 MS.gene80159:intron 30.0%
GTTAGAAATTTGGACACAAA+AGG - chr3.4:92246414-92246433 MS.gene80159:CDS 30.0%
TAATTTCACAGTTGTTCACA+GGG + chr3.4:92249396-92249415 None:intergenic 30.0%
TCCAAGAAATTGCTTAACAT+AGG + chr3.4:92248381-92248400 None:intergenic 30.0%
TCCTAGAACAAAAAAACTAG+AGG - chr3.4:92246008-92246027 MS.gene80159:CDS 30.0%
TTAATTTCACAGTTGTTCAC+AGG + chr3.4:92249397-92249416 None:intergenic 30.0%
TTACTGACAAAGTAGTCATT+AGG + chr3.4:92247091-92247110 None:intergenic 30.0%
TTATAATGTGAGGGAATCAA+TGG - chr3.4:92245957-92245976 MS.gene80159:CDS 30.0%
TTCCTTGAGTTATAATGTGA+GGG - chr3.4:92245948-92245967 MS.gene80159:CDS 30.0%
TTCTTCTTCAAAGTATGTCA+TGG - chr3.4:92248412-92248431 MS.gene80159:intron 30.0%
TTGAGTGATCAAATCATTGT+AGG + chr3.4:92246745-92246764 None:intergenic 30.0%
! AACTCATATGGTAATGCATA+AGG + chr3.4:92246684-92246703 None:intergenic 30.0%
! ACTAGATTTAATGGTCTTAG+TGG - chr3.4:92246282-92246301 MS.gene80159:CDS 30.0%
! ACTGATTCAATGAGTTGAAT+TGG - chr3.4:92248566-92248585 MS.gene80159:CDS 30.0%
! ATGGTTTTCCTTTTCAACTA+TGG - chr3.4:92247480-92247499 MS.gene80159:intron 30.0%
! CCTTATCATGATGATGATTT+AGG - chr3.4:92249235-92249254 MS.gene80159:CDS 30.0%
! CTAGTTAGCCTATGATATTT+AGG + chr3.4:92247161-92247180 None:intergenic 30.0%
! TGAATTGGTTCAACTATGAT+TGG - chr3.4:92248621-92248640 MS.gene80159:CDS 30.0%
! TTCAAGTAATCCGCAATTTT+TGG + chr3.4:92247667-92247686 None:intergenic 30.0%
! TTCATAAAAGGAAGTGCAAA+TGG - chr3.4:92248326-92248345 MS.gene80159:intron 30.0%
!! AAAGATTAGGAGTGCTAATA+GGG + chr3.4:92249053-92249072 None:intergenic 30.0%
!! AACCATCACATTTTAATCAC+AGG - chr3.4:92248032-92248051 MS.gene80159:CDS 30.0%
!! AATTAATGTGATTGGTGATG+GGG - chr3.4:92246353-92246372 MS.gene80159:CDS 30.0%
!! AGTACTAACTTGAGTTTTGT+GGG - chr3.4:92248815-92248834 MS.gene80159:CDS 30.0%
!! TAGTTATCTCCATTTTTCAC+TGG + chr3.4:92246576-92246595 None:intergenic 30.0%
!! TGAAGGGTTTGTTAGAAATT+TGG - chr3.4:92246404-92246423 MS.gene80159:CDS 30.0%
!!! GGTTTTTGTGGTTCTAATTT+TGG - chr3.4:92248100-92248119 MS.gene80159:CDS 30.0%
!!! TAGAGGATTTTAGAGTTAGA+TGG - chr3.4:92246025-92246044 MS.gene80159:CDS 30.0%
!!! TCCTCTAGTTTTTTTGTTCT+AGG + chr3.4:92246012-92246031 None:intergenic 30.0%
AACATAGGGAACTTCATCAA+AGG + chr3.4:92248366-92248385 None:intergenic 35.0%
AAGGCCAAGACTATTATTAG+AGG + chr3.4:92248990-92249009 None:intergenic 35.0%
AAGTAATGAGCTGAGATTCT+TGG + chr3.4:92248277-92248296 None:intergenic 35.0%
AAGTTTATCCCACTACTAAG+TGG + chr3.4:92247836-92247855 None:intergenic 35.0%
AATTTCACAGTTGTTCACAG+GGG + chr3.4:92249395-92249414 None:intergenic 35.0%
AATTTGTAGGCATTCCCAAA+AGG - chr3.4:92248842-92248861 MS.gene80159:CDS 35.0%
AGCAAAGACCATAGTTGAAA+AGG + chr3.4:92247491-92247510 None:intergenic 35.0%
AGTGGTGATTTCAATGTTGT+TGG - chr3.4:92246300-92246319 MS.gene80159:CDS 35.0%
AGTTTATCCCACTACTAAGT+GGG + chr3.4:92247835-92247854 None:intergenic 35.0%
ATTAGCACTCCTAATCTTTG+TGG - chr3.4:92249054-92249073 MS.gene80159:CDS 35.0%
CAACCAGACTGCAATTAATT+GGG + chr3.4:92248598-92248617 None:intergenic 35.0%
CAAGATTTGTGGTGGTTATA+TGG - chr3.4:92248078-92248097 MS.gene80159:CDS 35.0%
CAATCTCGTTCCAAAAATTG+CGG - chr3.4:92247654-92247673 MS.gene80159:intron 35.0%
CCCTATGTTAAGCAATTTCT+TGG - chr3.4:92248377-92248396 MS.gene80159:intron 35.0%
CGTCTCCATATTGAATTACT+TGG + chr3.4:92249124-92249143 None:intergenic 35.0%
CTCCTGTGATTAAAATGTGA+TGG + chr3.4:92248037-92248056 None:intergenic 35.0%
CTGAATTGTTCGATCTTGAT+CGG + chr3.4:92247573-92247592 None:intergenic 35.0%
GAAACGTTACCACAAAGATT+AGG + chr3.4:92249066-92249085 None:intergenic 35.0%
GATGGGAAATTCCTACTATT+GGG - chr3.4:92246529-92246548 MS.gene80159:intron 35.0%
GCAAATGGAACAAACTCATA+TGG + chr3.4:92246696-92246715 None:intergenic 35.0%
GCACAAAATGGTGAGAAATT+GGG - chr3.4:92246243-92246262 MS.gene80159:CDS 35.0%
GGATATGAACTCTATTCCAA+AGG - chr3.4:92246506-92246525 MS.gene80159:intron 35.0%
GGTTGAGCCAAGATTTAAAA+CGG - chr3.4:92248433-92248452 MS.gene80159:intron 35.0%
GTGATTTCAATGTTGTTGGT+GGG - chr3.4:92246304-92246323 MS.gene80159:CDS 35.0%
TACATCAGCACAAACACATT+TGG - chr3.4:92249086-92249105 MS.gene80159:CDS 35.0%
TCAACCAGACTGCAATTAAT+TGG + chr3.4:92248599-92248618 None:intergenic 35.0%
TCAATTCAAATACGCTCTCA+CGG - chr3.4:92248007-92248026 MS.gene80159:CDS 35.0%
TGAGAACAATTGAGAATGCA+TGG - chr3.4:92248924-92248943 MS.gene80159:CDS 35.0%
TGCACAAAATGGTGAGAAAT+TGG - chr3.4:92246242-92246261 MS.gene80159:CDS 35.0%
TTAGGAGACCTAAAATCCAT+AGG + chr3.4:92247073-92247092 None:intergenic 35.0%
TTCCCTCACATTATAACTCA+AGG + chr3.4:92245953-92245972 None:intergenic 35.0%
TTTCTAACAAACCCTTCATG+TGG + chr3.4:92246402-92246421 None:intergenic 35.0%
TTTGGATCAGAACTTTGATG+CGG - chr3.4:92247192-92247211 MS.gene80159:CDS 35.0%
! ATAAAAGGAAGTGCAAATGG+TGG - chr3.4:92248329-92248348 MS.gene80159:intron 35.0%
! GAGTACTAACTTGAGTTTTG+TGG - chr3.4:92248814-92248833 MS.gene80159:CDS 35.0%
! GTTGAGCCAAGATTTAAAAC+GGG - chr3.4:92248434-92248453 MS.gene80159:intron 35.0%
! TAACTAGTCCATGGTGATTT+TGG - chr3.4:92247174-92247193 MS.gene80159:CDS 35.0%
! TAAGATGAATGTTGGCTATC+TGG - chr3.4:92248211-92248230 MS.gene80159:intron 35.0%
! TCAGTTTGACTAAATGGACT+AGG + chr3.4:92249295-92249314 None:intergenic 35.0%
! TCATGATGATGATTTAGGTG+CGG - chr3.4:92249240-92249259 MS.gene80159:CDS 35.0%
! TGATGAGTTGGATCCAAATA+TGG - chr3.4:92247766-92247785 MS.gene80159:intron 35.0%
!! AAACCACCCGTTTTAAATCT+TGG + chr3.4:92248443-92248462 None:intergenic 35.0%
!! AGATTTAAAACGGGTGGTTT+TGG - chr3.4:92248443-92248462 MS.gene80159:intron 35.0%
!! AGATTTAGGCATTGATGAGT+TGG - chr3.4:92247754-92247773 MS.gene80159:intron 35.0%
!! ATAGGAGTACCAGTGAAAAA+TGG - chr3.4:92246564-92246583 MS.gene80159:intron 35.0%
!! CAAAGATTAGGAGTGCTAAT+AGG + chr3.4:92249054-92249073 None:intergenic 35.0%
!! CATTGGTTTGATTCAAGATC+GGG - chr3.4:92248772-92248791 MS.gene80159:CDS 35.0%
!! CTGATTTGCCTATGGATTTT+AGG - chr3.4:92247062-92247081 MS.gene80159:CDS 35.0%
!! CTGGAAGGTTCTTTTGTTTA+TGG - chr3.4:92248230-92248249 MS.gene80159:intron 35.0%
!! GAATCAATGGAAGGAGTATT+GGG - chr3.4:92245970-92245989 MS.gene80159:CDS 35.0%
!! GCATTGGTTTGATTCAAGAT+CGG - chr3.4:92248771-92248790 MS.gene80159:CDS 35.0%
!! GCTGTTTTCAAAAGCTATCA+TGG - chr3.4:92247874-92247893 MS.gene80159:CDS 35.0%
!! GTACTAACTTGAGTTTTGTG+GGG - chr3.4:92248816-92248835 MS.gene80159:CDS 35.0%
!! TACTAACTTGAGTTTTGTGG+GGG - chr3.4:92248817-92248836 MS.gene80159:CDS 35.0%
AAATCAGTTGCCACTCACAT+CGG + chr3.4:92247049-92247068 None:intergenic 40.0%
AATGTGAGGGAATCAATGGA+AGG - chr3.4:92245961-92245980 MS.gene80159:CDS 40.0%
ACAATGCCATACACAGAATC+TGG - chr3.4:92247265-92247284 MS.gene80159:intron 40.0%
ACTAATTCAACACTAGCCAC+TGG - chr3.4:92246618-92246637 MS.gene80159:intron 40.0%
AGAGAGAGTAGTGAGTAACT+TGG - chr3.4:92248055-92248074 MS.gene80159:CDS 40.0%
AGTTGATCCCACTTAGTAGT+GGG - chr3.4:92247825-92247844 MS.gene80159:CDS 40.0%
ATCAAACCAATGCGACTTCT+AGG + chr3.4:92248764-92248783 None:intergenic 40.0%
ATCAGATTGGCACAAGCTTA+TGG - chr3.4:92247461-92247480 MS.gene80159:intron 40.0%
ATCATAGGCTAACTAGTCCA+TGG - chr3.4:92247165-92247184 MS.gene80159:CDS 40.0%
ATCCTAAATGTGACTCAAGG+AGG - chr3.4:92248896-92248915 MS.gene80159:CDS 40.0%
ATGATCTTGGGGTAATCATG+TGG - chr3.4:92246478-92246497 MS.gene80159:intron 40.0%
ATGGAGACGAATTGAAGTCA+TGG - chr3.4:92249135-92249154 MS.gene80159:CDS 40.0%
ATTGGGAAGAAGTTGAGGAT+AGG - chr3.4:92246546-92246565 MS.gene80159:intron 40.0%
CATTGATGTCTTCAAAGCTG+TGG - chr3.4:92246647-92246666 MS.gene80159:intron 40.0%
CTACTATTGGGAAGAAGTTG+AGG - chr3.4:92246541-92246560 MS.gene80159:intron 40.0%
CTATAACCTAGAAGTCGCAT+TGG - chr3.4:92248755-92248774 MS.gene80159:CDS 40.0%
CTCAACTTCTTCCCAATAGT+AGG + chr3.4:92246543-92246562 None:intergenic 40.0%
GAACTCTATTCCAAAGGGAT+GGG - chr3.4:92246512-92246531 MS.gene80159:intron 40.0%
GACGAATTGAAGTCATGGTT+AGG - chr3.4:92249140-92249159 MS.gene80159:CDS 40.0%
GAGTAACTTGGCAAGATTTG+TGG - chr3.4:92248067-92248086 MS.gene80159:CDS 40.0%
GATCCCAATTAATTGCAGTC+TGG - chr3.4:92248592-92248611 MS.gene80159:CDS 40.0%
GCAATCCTAAATGTGACTCA+AGG - chr3.4:92248893-92248912 MS.gene80159:CDS 40.0%
GCAGTCTGGTTGAATTGAAT+TGG - chr3.4:92248606-92248625 MS.gene80159:CDS 40.0%
GCTATTGAGGAAGTTGGAAT+TGG - chr3.4:92246144-92246163 MS.gene80159:CDS 40.0%
GGAATTGGAGCCACTAAATT+TGG - chr3.4:92246159-92246178 MS.gene80159:CDS 40.0%
GGATGGGAAATTCCTACTAT+TGG - chr3.4:92246528-92246547 MS.gene80159:intron 40.0%
GGTGATTTCAATGTTGTTGG+TGG - chr3.4:92246303-92246322 MS.gene80159:CDS 40.0%
GTTCTGATCCAAAATCACCA+TGG + chr3.4:92247185-92247204 None:intergenic 40.0%
TAACTTGGCAAGATTTGTGG+TGG - chr3.4:92248070-92248089 MS.gene80159:CDS 40.0%
TCTGGTAGCAGACATTTCAA+GGG - chr3.4:92248871-92248890 MS.gene80159:CDS 40.0%
TGAACTCTATTCCAAAGGGA+TGG - chr3.4:92246511-92246530 MS.gene80159:intron 40.0%
TGATGAGTCAAGGCTATGTT+TGG - chr3.4:92245893-92245912 MS.gene80159:CDS 40.0%
TGCTACAATTGCATCAGCAA+TGG - chr3.4:92246122-92246141 MS.gene80159:CDS 40.0%
TGGTTAACGTCTGTAATAGC+TGG + chr3.4:92248179-92248198 None:intergenic 40.0%
TTGGATAGCAACCGATAGTA+TGG - chr3.4:92245912-92245931 MS.gene80159:CDS 40.0%
TTGTTAAAGACCGATGTGAG+TGG - chr3.4:92247036-92247055 MS.gene80159:CDS 40.0%
! ATAGATGATCTCGTGTTGCT+TGG + chr3.4:92249423-92249442 None:intergenic 40.0%
! ATGAATGTTGGCTATCTGGA+AGG - chr3.4:92248215-92248234 MS.gene80159:intron 40.0%
! GATTTTGGACACCACATGAA+GGG - chr3.4:92246388-92246407 MS.gene80159:CDS 40.0%
! GGAATCAATGGAAGGAGTAT+TGG - chr3.4:92245969-92245988 MS.gene80159:CDS 40.0%
! GGGAAAAAAGGGTTGGATTT+TGG - chr3.4:92246373-92246392 MS.gene80159:CDS 40.0%
! GGTGGTTATATGGGTTTTTG+TGG - chr3.4:92248088-92248107 MS.gene80159:CDS 40.0%
! TTTTGTGGGGGTGAATTTGT+AGG - chr3.4:92248829-92248848 MS.gene80159:CDS 40.0%
!! CTAAATGGACTAGGTGGATA+AGG + chr3.4:92249286-92249305 None:intergenic 40.0%
!! GATTGGTGATGGGGAAAAAA+GGG - chr3.4:92246362-92246381 MS.gene80159:CDS 40.0%
!! GTTTGACTAAATGGACTAGG+TGG + chr3.4:92249292-92249311 None:intergenic 40.0%
!! TAGATGATCTCGTGTTGCTT+GGG + chr3.4:92249422-92249441 None:intergenic 40.0%
!! TGATTGGTGATGGGGAAAAA+AGG - chr3.4:92246361-92246380 MS.gene80159:CDS 40.0%
!!! CTTTTTGAAGCCACTCACAT+GGG - chr3.4:92247339-92247358 MS.gene80159:intron 40.0%
AAAGACCCCAGAAGCTTTCA+AGG + chr3.4:92249009-92249028 None:intergenic 45.0%
ACTAAGTGGGATCAACTGCA+TGG + chr3.4:92247822-92247841 None:intergenic 45.0%
ATTCCCAAAAGGTTCACCTC+TGG - chr3.4:92248853-92248872 MS.gene80159:CDS 45.0%
CACAGAATCTGGTGTGACAA+TGG - chr3.4:92247276-92247295 MS.gene80159:intron 45.0%
CAGTTGATCCCACTTAGTAG+TGG - chr3.4:92247824-92247843 MS.gene80159:CDS 45.0%
CCATGTGAGTGGCTTCAAAA+AGG + chr3.4:92247341-92247360 None:intergenic 45.0%
CTCTGGTAGCAGACATTTCA+AGG - chr3.4:92248870-92248889 MS.gene80159:CDS 45.0%
CTTGAAATGTCTGCTACCAG+AGG + chr3.4:92248872-92248891 None:intergenic 45.0%
GCAATGGCTATTGAGGAAGT+TGG - chr3.4:92246138-92246157 MS.gene80159:CDS 45.0%
GGAATAGAGTTCATATCCCC+TGG + chr3.4:92246504-92246523 None:intergenic 45.0%
GTAGGAATTTCCCATCCCTT+TGG + chr3.4:92246525-92246544 None:intergenic 45.0%
GTCACACCAGATTCTGTGTA+TGG + chr3.4:92247274-92247293 None:intergenic 45.0%
GTTCCATTTGCAAAGCCTGA+TGG - chr3.4:92246705-92246724 MS.gene80159:intron 45.0%
TCACCATCAGGCTTTGCAAA+TGG + chr3.4:92246711-92246730 None:intergenic 45.0%
TGATGATTTAGGTGCGGTAG+AGG - chr3.4:92249246-92249265 MS.gene80159:CDS 45.0%
TGATGTCTTCAAAGCTGTGG+TGG - chr3.4:92246650-92246669 MS.gene80159:intron 45.0%
TGCATCAGCAATGGCTATTG+AGG - chr3.4:92246131-92246150 MS.gene80159:CDS 45.0%
TGCCTCCTTGAGTCACATTT+AGG + chr3.4:92248901-92248920 None:intergenic 45.0%
TTGTTCACAGGGGAAACTTC+TGG + chr3.4:92249385-92249404 None:intergenic 45.0%
! CTACCAGAGGTGAACCTTTT+GGG + chr3.4:92248859-92248878 None:intergenic 45.0%
! GAGCCAAGATTTAAAACGGG+TGG - chr3.4:92248437-92248456 MS.gene80159:intron 45.0%
! GGATTTTGGACACCACATGA+AGG - chr3.4:92246387-92246406 MS.gene80159:CDS 45.0%
! GGGGTCTTTTTCTCATAGCA+GGG - chr3.4:92249020-92249039 MS.gene80159:CDS 45.0%
! TGGGGTCTTTTTCTCATAGC+AGG - chr3.4:92249019-92249038 MS.gene80159:CDS 45.0%
!! AGTGGCAACTGATTTGCCTA+TGG - chr3.4:92247054-92247073 MS.gene80159:CDS 45.0%
!! TCTTGGCCTTGAAAGCTTCT+GGG - chr3.4:92249000-92249019 MS.gene80159:CDS 45.0%
!! TGGAAGGAGTATTGGGTGTT+AGG - chr3.4:92245977-92245996 MS.gene80159:CDS 45.0%
!!! CCTTTTTGAAGCCACTCACA+TGG - chr3.4:92247338-92247357 MS.gene80159:intron 45.0%
ACCCAAAGATCCCATGTGAG+TGG + chr3.4:92247352-92247371 None:intergenic 50.0%
AGAACTTTGATGCGGTGGTG+GGG - chr3.4:92247200-92247219 MS.gene80159:CDS 50.0%
AGCCACTCACATGGGATCTT+TGG - chr3.4:92247347-92247366 MS.gene80159:intron 50.0%
CAGAACTTTGATGCGGTGGT+GGG - chr3.4:92247199-92247218 MS.gene80159:CDS 50.0%
CTAGGTGGATAAGGTGTACC+TGG + chr3.4:92249277-92249296 None:intergenic 50.0%
GACATCAATGCAGAAGCCAG+TGG + chr3.4:92246637-92246656 None:intergenic 50.0%
GCCACTCACATGGGATCTTT+GGG - chr3.4:92247348-92247367 MS.gene80159:intron 50.0%
GCTTGTGCCAATCTGATGAG+AGG + chr3.4:92247458-92247477 None:intergenic 50.0%
GGACCAACCTCTCATCAGAT+TGG - chr3.4:92247448-92247467 MS.gene80159:intron 50.0%
GGATCAGAACTTTGATGCGG+TGG - chr3.4:92247195-92247214 MS.gene80159:CDS 50.0%
GTGCCAATCTGATGAGAGGT+TGG + chr3.4:92247454-92247473 None:intergenic 50.0%
TCAGAACTTTGATGCGGTGG+TGG - chr3.4:92247198-92247217 MS.gene80159:CDS 50.0%
TGGATAAGGTGTACCTGGAG+AGG + chr3.4:92249272-92249291 None:intergenic 50.0%
TTGGGGTAATCATGTGGCCA+GGG - chr3.4:92246484-92246503 MS.gene80159:intron 50.0%
! AAAGCCTGATGGTGAGATGG+CGG - chr3.4:92246716-92246735 MS.gene80159:intron 50.0%
! GCTACCAGAGGTGAACCTTT+TGG + chr3.4:92248860-92248879 None:intergenic 50.0%
! TGCAAAGCCTGATGGTGAGA+TGG - chr3.4:92246713-92246732 MS.gene80159:intron 50.0%
!! CTTGGCCTTGAAAGCTTCTG+GGG - chr3.4:92249001-92249020 MS.gene80159:CDS 50.0%
!! GGTGATGGGGAAAAAAGGGT+TGG - chr3.4:92246366-92246385 MS.gene80159:CDS 50.0%
!! GTCTTGGCCTTGAAAGCTTC+TGG - chr3.4:92248999-92249018 MS.gene80159:CDS 50.0%
CTTGGGGTAATCATGTGGCC+AGG - chr3.4:92246483-92246502 MS.gene80159:intron 55.0%
TGGGGTAATCATGTGGCCAG+GGG - chr3.4:92246485-92246504 MS.gene80159:intron 55.0%
! AAGCCTGATGGTGAGATGGC+GGG - chr3.4:92246717-92246736 MS.gene80159:intron 55.0%
! GAACTTTGATGCGGTGGTGG+GGG - chr3.4:92247201-92247220 MS.gene80159:CDS 55.0%
GTTCCCGCCATCTCACCATC+AGG + chr3.4:92246723-92246742 None:intergenic 60.0%
GGTGCGGTAGAGGCCTCTCC+AGG - chr3.4:92249256-92249275 MS.gene80159:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 92245892 92249444 92245892 ID=MS.gene80159
chr3.4 mRNA 92245892 92249444 92245892 ID=MS.gene80159.t1;Parent=MS.gene80159
chr3.4 exon 92248560 92249444 92248560 ID=MS.gene80159.t1.exon1;Parent=MS.gene80159.t1
chr3.4 CDS 92248560 92249444 92248560 ID=cds.MS.gene80159.t1;Parent=MS.gene80159.t1
chr3.4 exon 92247822 92248134 92247822 ID=MS.gene80159.t1.exon2;Parent=MS.gene80159.t1
chr3.4 CDS 92247822 92248134 92247822 ID=cds.MS.gene80159.t1;Parent=MS.gene80159.t1
chr3.4 exon 92246867 92247282 92246867 ID=MS.gene80159.t1.exon3;Parent=MS.gene80159.t1
chr3.4 CDS 92246867 92247282 92246867 ID=cds.MS.gene80159.t1;Parent=MS.gene80159.t1
chr3.4 exon 92245892 92246485 92245892 ID=MS.gene80159.t1.exon4;Parent=MS.gene80159.t1
chr3.4 CDS 92245892 92246485 92245892 ID=cds.MS.gene80159.t1;Parent=MS.gene80159.t1
Gene Sequence

>MS.gene80159

ATGATGAGTCAAGGCTATGTTTGGATAGCAACCGATAGTATGGCTAATTTATTCAATTCCTTGAGTTATAATGTGAGGGAATCAATGGAAGGAGTATTGGGTGTTAGGACTTATATTCCTAGAACAAAAAAACTAGAGGATTTTAGAGTTAGATGGAAAAGAAAATTTTTAAGTGATAATCCAACACTTGTTGACACAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACAATTGCATCAGCAATGGCTATTGAGGAAGTTGGAATTGGAGCCACTAAATTTGGTTACAATGAGAGCAACACATCAAGCAATTATTACATGCCTACTTTTGAAAATTTTGGTATTGCACAAAATGGTGAGAAATTGGGTCAAGCTTTGTTAAACACTAGATTTAATGGTCTTAGTGGTGATTTCAATGTTGTTGGTGGGAAGTTACAAGCATCAATATATGAAATAATTAATGTGATTGGTGATGGGGAAAAAAGGGTTGGATTTTGGACACCACATGAAGGGTTTGTTAGAAATTTGGACACAAAAGGCATAATAAGAAGCAATAATAGCATATACTCTACTTCTAAAAATGATCTTGGGGTAATCATGTGGCCAGGGGATATGAACTCTATTCCAAAGGGATGGGAAATTCCTACTATTGGGAAGAAGTTGAGGATAGGAGTACCAGTGAAAAATGGAGATAACTACACTGAATTTTTGCATATAAGTACTAATTCAACACTAGCCACTGGCTTCTGCATTGATGTCTTCAAAGCTGTGGTGGAAATTTTGCCTTATGCATTACCATATGAGTTTGTTCCATTTGCAAAGCCTGATGGTGAGATGGCGGGAACCTACAATGATTTGATCACTCAACTTTATTATGGGGTAATCTTTTTTCTCATATCAAGAACCCTGATCTTATATATGTGAATGATTTAATTTACATGATGAAACATTGCCAAATTCTTAGTATACTTTTAATATATGAAATATGTGAACTTTATGGTTTCTTTATTGGATAAATAATCAAATTAATGCATGAAATTGTAAGAAATGGTCAAAATAGTCCCTACTCTTTGAGAGTTTAAAAACACATCCATTAAATAATAAAATGTCATTTAAAATAATCATGCGTTAATTTTTGTTGTTAAAGACCGATGTGAGTGGCAACTGATTTGCCTATGGATTTTAGGTCTCCTAATGACTACTTTGTCAGTAATTAGTCTTTGAACAATTGAAATTACTAACAAATTGTTTTTGAAATAACCTAAATATCATAGGCTAACTAGTCCATGGTGATTTTGGATCAGAACTTTGATGCGGTGGTGGGGGATGTAACGATCATTGCAAACAGATCCGACTATGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGGTTGTTATAATGAAAGACAACAGAAAGAAAAATGCATGGGCCTTTTTGAAGCCACTCACATGGGATCTTTGGGTAACAACAGCTTGTTCATTTGTATTCATTGGATTTGTTGTATGGGTCCTTGAACATAGAATAAACAACGATTTCAGAGGACCAACCTCTCATCAGATTGGCACAAGCTTATGGTTTTCCTTTTCAACTATGGTCTTTGCTCAAAGTAAGTTTCACTCATCAAACACACACATTCATACAGTAAGCACATCAATGATTATCCGATCAAGATCGAACAATTCAGCTTTCAAACTCAGTATTTTAGAGTTAAAAAATATCAAAATTTACTTACTTTCTATATTGTACAATCTCGTTCCAAAAATTGCGGATTACTTGAATTTTTTGCTACATACAATCTAAATCCATAAGTGTTCATGTATAAGTTATTCCATCACAAATTAGGAAAGATTTAGGCATTGATGAGTTGGATCCAAATATGGTTTGTGATAAACTTTATGACGTAATTTGATCCATGCAGTTGATCCCACTTAGTAGTGGGATAAACTTTTTTCATATAAGTTAGAAGCTGTTTTCAAAAGCTATCATGGAGTGCTTATAGAAATCTAGAGAAAATAGGTTATGGACATGTCATATGTTGTTTGCATGCTCTCTTAAAAAGTATCACAAGTATTTACATCGGTAGATAAGTTCAAATAAGTCAATTCAAATACGCTCTCACGGTTAACCATCACATTTTAATCACAGGAGAGAGAGTAGTGAGTAACTTGGCAAGATTTGTGGTGGTTATATGGGTTTTTGTGGTTCTAATTTTGGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTAACAGTTGAACAACTAAAGCCAGCTATTACAGACGTTAACCAACTTTTAAAGAATAAGATGAATGTTGGCTATCTGGAAGGTTCTTTTGTTTATGGAATCTTGAAGGAAATGAATTTCCAAGAATCTCAGCTCATTACTTATCAATCACCTGAAGAATGTAATGAGCTTTTCATAAAAGGAAGTGCAAATGGTGGTATTGATGCTGCCTTTGATGAAGTTCCCTATGTTAAGCAATTTCTTGGAATTTATAGTTGTTCTTCTTCAAAGTATGTCATGGTTGAGCCAAGATTTAAAACGGGTGGTTTTGGCTATGTAAGTTTTGTTAACTCTCTCTCTCATCTATCTCCCTAATATAATGTCATCATAATTTTCTCTTGTGAGCAACATTCCAAAATTCAAACCTAACATACTGATTCAATGAGTTGAATTGGTTTGATCCCAATTAATTGCAGTCTGGTTGAATTGAATTGGTTCAACTATGATTGGTTCAAACGATTCATGTTTTTATATTTTAATTTATTTCTTTTTACAATTTGAATACTATTTTACTTGTTTATTTATTTCTCATTTGGTTCACTTGTGATTGAACCAATTGAACTATAACCTAGAAGTCGCATTGGTTTGATTCAAGATCGGGTTTGTAAAACATTGCTTGTGAGTACTAACTTGAGTTTTGTGGGGGTGAATTTGTAGGCATTCCCAAAAGGTTCACCTCTGGTAGCAGACATTTCAAGGGCAATCCTAAATGTGACTCAAGGAGGCAAAATGAGAACAATTGAGAATGCATGGTTCAAAGAAAGTCGTTGTCTAGATTCCAATACAGAAATTTCCTCTAATAATAGTCTTGGCCTTGAAAGCTTCTGGGGTCTTTTTCTCATAGCAGGGATTGCTTCCCTATTAGCACTCCTAATCTTTGTGGTAACGTTTCTACATCAGCACAAACACATTTGGTTAAACAATAATCCAAGTAATTCAATATGGAGACGAATTGAAGTCATGGTTAGGATGTTTGATCAAAGAGACTTGAGCAGTCACACATTCAAGAAAACAGAAAATATAAATGGAAGTAGTAATAGTCCTTATCATGATGATGATTTAGGTGCGGTAGAGGCCTCTCCAGGTACACCTTATCCACCTAGTCCATTTAGTCAAACTGAATCAAATGTTTCCTTTTATGGAGATTTTAGTCAAAGCATAGAAATGGATGTCATGCAAATTACTAATCCAGAAGTTTCCCCTGTGAACAACTGTGAAATTAACTCCCAAGCAACACGAGATCATCTATAA
Protein sequence

>MS.gene80159.t1

MMSQGYVWIATDSMANLFNSLSYNVRESMEGVLGVRTYIPRTKKLEDFRVRWKRKFLSDNPTLVDTNLNIFGIWAYDATIASAMAIEEVGIGATKFGYNESNTSSNYYMPTFENFGIAQNGEKLGQALLNTRFNGLSGDFNVVGGKLQASIYEIINVIGDGEKRVGFWTPHEGFVRNLDTKGIIRSNNSIYSTSKNDLGVIMWPGDMNSIPKGWEIPTIGKKLRIGVPVKNGDNYTEFLHISTNSTLATGFCIDVFKAVVEILPYALPYEFVPFAKPDGEMAGTYNDLITQLYYGNFDAVVGDVTIIANRSDYVDFTMPYTESGVTMVVIMKDNRKKNAWAFLKPLTWDLWVTTACSFVFIGFVVWVLEHRINNDFRGPTSHQIGTSLWFSFSTMVFAQRERVVSNLARFVVVIWVFVVLILVQSYTASLTSLLTVEQLKPAITDVNQLLKNKMNVGYLEGSFVYGILKEMNFQESQLITYQSPEECNELFIKGSANGGIDAAFDEVPYVKQFLGIYSCSSSKYVMVEPRFKTGGFGYAFPKGSPLVADISRAILNVTQGGKMRTIENAWFKESRCLDSNTEISSNNSLGLESFWGLFLIAGIASLLALLIFVVTFLHQHKHIWLNNNPSNSIWRRIEVMVRMFDQRDLSSHTFKKTENINGSSNSPYHDDDLGAVEASPGTPYPPSPFSQTESNVSFYGDFSQSIEMDVMQITNPEVSPVNNCEINSQATRDHL