Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80195.t1 | XP_003603302.1 | 89.3 | 805 | 83 | 1 | 1 | 805 | 1 | 802 | 0.00E+00 | 1123.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80195.t1 | Q04264 | 29.8 | 205 | 136 | 5 | 20 | 223 | 19 | 216 | 2.5e-14 | 82.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80195.t1 | G7J9V3 | 89.3 | 805 | 83 | 1 | 1 | 805 | 1 | 802 | 0.0e+00 | 1123.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene80195 | 0.801794 | 7.61E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene80195 | 0.806347 | 8.60E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene80195 | 0.81876 | 1.66E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene80195 | 0.805485 | 1.31E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene80195 | 0.804176 | 2.45E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene80195 | 0.827224 | 1.76E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene80195 | 0.805449 | 1.33E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene80195 | 0.803032 | 4.23E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene80195 | 0.800028 | 1.75E-48 | -1.69E-46 |
| MS.gene057314 | MS.gene80195 | 0.819875 | 9.23E-53 | -1.69E-46 |
| MS.gene057360 | MS.gene80195 | 0.803261 | 3.79E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene80195 | 0.830942 | 2.21E-55 | -1.69E-46 |
| MS.gene058668 | MS.gene80195 | 0.868912 | 4.59E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80195.t1 | MTR_3g106100 | 95.901 | 805 | 30 | 1 | 1 | 805 | 1 | 802 | 0.0 | 1544 |
| MS.gene80195.t1 | MTR_1g014270 | 64.062 | 320 | 92 | 1 | 1 | 297 | 1 | 320 | 1.95e-137 | 430 |
| MS.gene80195.t1 | MTR_1g014270 | 38.529 | 571 | 265 | 15 | 293 | 805 | 388 | 930 | 3.17e-63 | 229 |
| MS.gene80195.t1 | MTR_1g014300 | 64.253 | 221 | 79 | 0 | 6 | 226 | 18 | 238 | 3.52e-93 | 292 |
| MS.gene80195.t1 | MTR_4g006875 | 48.165 | 218 | 113 | 0 | 36 | 253 | 1 | 218 | 1.01e-66 | 236 |
| MS.gene80195.t1 | MTR_4g006875 | 31.915 | 141 | 71 | 3 | 455 | 593 | 630 | 747 | 3.02e-14 | 77.4 |
| MS.gene80195.t1 | MTR_4g006875 | 46.457 | 254 | 135 | 1 | 4 | 256 | 6 | 259 | 1.28e-65 | 234 |
| MS.gene80195.t1 | MTR_4g006875 | 31.915 | 141 | 71 | 3 | 455 | 593 | 668 | 785 | 3.13e-14 | 77.4 |
| MS.gene80195.t1 | MTR_4g134080 | 46.977 | 215 | 114 | 0 | 23 | 237 | 29 | 243 | 6.40e-54 | 203 |
| MS.gene80195.t1 | MTR_4g134080 | 33.945 | 109 | 51 | 3 | 496 | 587 | 1324 | 1428 | 8.67e-15 | 79.3 |
| MS.gene80195.t1 | MTR_4g134080 | 46.977 | 215 | 114 | 0 | 23 | 237 | 29 | 243 | 6.93e-54 | 203 |
| MS.gene80195.t1 | MTR_4g134080 | 33.945 | 109 | 51 | 3 | 496 | 587 | 1324 | 1428 | 8.97e-15 | 79.3 |
| MS.gene80195.t1 | MTR_4g134080 | 46.977 | 215 | 114 | 0 | 23 | 237 | 29 | 243 | 7.41e-54 | 203 |
| MS.gene80195.t1 | MTR_4g134080 | 33.945 | 109 | 51 | 3 | 496 | 587 | 1332 | 1436 | 8.46e-15 | 79.7 |
| MS.gene80195.t1 | MTR_2g027090 | 44.053 | 227 | 127 | 0 | 11 | 237 | 8 | 234 | 3.00e-52 | 198 |
| MS.gene80195.t1 | MTR_2g027090 | 41.489 | 94 | 45 | 2 | 500 | 587 | 1331 | 1420 | 5.37e-16 | 83.6 |
| MS.gene80195.t1 | MTR_1g037280 | 36.471 | 170 | 108 | 0 | 54 | 223 | 62 | 231 | 1.09e-31 | 134 |
| MS.gene80195.t1 | MTR_1g037280 | 36.471 | 170 | 108 | 0 | 54 | 223 | 62 | 231 | 1.36e-31 | 133 |
| MS.gene80195.t1 | MTR_1g037280 | 36.471 | 170 | 108 | 0 | 54 | 223 | 62 | 231 | 1.43e-31 | 133 |
| MS.gene80195.t1 | MTR_4g030130 | 43.103 | 116 | 65 | 1 | 10 | 124 | 18 | 133 | 3.09e-23 | 97.1 |
| MS.gene80195.t1 | MTR_4g030120 | 39.024 | 82 | 39 | 1 | 174 | 255 | 1 | 71 | 3.73e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80195.t1 | AT4G31880 | 39.286 | 784 | 324 | 24 | 1 | 678 | 1 | 738 | 3.08e-136 | 426 |
| MS.gene80195.t1 | AT4G31880 | 39.464 | 783 | 323 | 24 | 1 | 678 | 1 | 737 | 3.30e-136 | 426 |
| MS.gene80195.t1 | AT1G80810 | 52.174 | 253 | 119 | 1 | 1 | 253 | 5 | 255 | 2.20e-81 | 275 |
| MS.gene80195.t1 | AT1G15940 | 51.894 | 264 | 125 | 1 | 9 | 272 | 13 | 274 | 5.07e-81 | 280 |
| MS.gene80195.t1 | AT1G80810 | 52.174 | 253 | 119 | 1 | 1 | 253 | 5 | 255 | 1.16e-80 | 276 |
| MS.gene80195.t1 | AT1G80810 | 52.709 | 203 | 96 | 0 | 51 | 253 | 1 | 203 | 3.60e-67 | 238 |
| MS.gene80195.t1 | AT1G80810 | 52.709 | 203 | 96 | 0 | 51 | 253 | 1 | 203 | 3.73e-67 | 238 |
| MS.gene80195.t1 | AT1G80810 | 52.709 | 203 | 96 | 0 | 51 | 253 | 1 | 203 | 3.73e-67 | 238 |
| MS.gene80195.t1 | AT5G47690 | 48.165 | 218 | 113 | 0 | 9 | 226 | 6 | 223 | 2.32e-50 | 192 |
| MS.gene80195.t1 | AT5G47690 | 42.697 | 89 | 47 | 2 | 502 | 587 | 1334 | 1421 | 7.07e-17 | 86.3 |
| MS.gene80195.t1 | AT5G47690 | 48.165 | 218 | 113 | 0 | 9 | 226 | 6 | 223 | 2.38e-50 | 192 |
| MS.gene80195.t1 | AT5G47690 | 42.697 | 89 | 47 | 2 | 502 | 587 | 1334 | 1421 | 6.89e-17 | 86.3 |
| MS.gene80195.t1 | AT5G47690 | 48.165 | 218 | 113 | 0 | 9 | 226 | 6 | 223 | 2.51e-50 | 192 |
| MS.gene80195.t1 | AT5G47690 | 42.697 | 89 | 47 | 2 | 502 | 587 | 1333 | 1420 | 7.13e-17 | 86.3 |
| MS.gene80195.t1 | AT5G47690 | 53.175 | 126 | 59 | 0 | 101 | 226 | 1 | 126 | 5.15e-28 | 122 |
| MS.gene80195.t1 | AT5G47690 | 42.697 | 89 | 47 | 2 | 502 | 587 | 1237 | 1324 | 8.81e-17 | 85.9 |
| MS.gene80195.t1 | AT1G77600 | 30.736 | 231 | 129 | 3 | 27 | 228 | 25 | 253 | 3.95e-27 | 119 |
| MS.gene80195.t1 | AT1G77600 | 30.736 | 231 | 129 | 3 | 27 | 228 | 25 | 253 | 4.55e-27 | 119 |
| MS.gene80195.t1 | AT1G77600 | 30.736 | 231 | 129 | 3 | 27 | 228 | 25 | 253 | 7.03e-27 | 118 |
| MS.gene80195.t1 | AT5G10950 | 39.860 | 143 | 75 | 2 | 517 | 651 | 20 | 159 | 1.07e-19 | 92.8 |
Find 182 sgRNAs with CRISPR-Local
Find 417 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGACGCTTCTTTCCCTTCA+TGG | 0.130811 | 3.4:+92541128 | None:intergenic |
| TGTTTGGATATTCCACTCTT+TGG | 0.166899 | 3.4:+92541339 | None:intergenic |
| CCCTCAGAAGCAGCAGTCTT+TGG | 0.171948 | 3.4:+92541309 | None:intergenic |
| CTCTTCTTGGTGGCTTCTTC+TGG | 0.173818 | 3.4:+92544888 | None:intergenic |
| TGAAGTTAGCAGAAAGTTTA+AGG | 0.179426 | 3.4:-92541508 | MS.gene80195:CDS |
| GTTTGGATATTCCACTCTTT+GGG | 0.201717 | 3.4:+92541340 | None:intergenic |
| CGATTGTGCAGCCTCTTTAA+TGG | 0.217465 | 3.4:+92545028 | None:intergenic |
| TGAATGTGATGCGCTGATTT+TGG | 0.218531 | 3.4:-92545892 | MS.gene80195:CDS |
| GGACCCTCTCTCCCAATTTC+CGG | 0.226072 | 3.4:+92545177 | None:intergenic |
| CCTCAGAAGCAGCAGTCTTT+GGG | 0.234718 | 3.4:+92541310 | None:intergenic |
| CAAATGAAGATACAATTAAT+TGG | 0.235034 | 3.4:+92546012 | None:intergenic |
| CTTGGAACCACCAATGTTCT+TGG | 0.235408 | 3.4:+92541428 | None:intergenic |
| TTTCCCGATTGCCCGGAAAT+TGG | 0.235820 | 3.4:-92545189 | MS.gene80195:CDS |
| GATTTACTGCTACCACTTAT+AGG | 0.247954 | 3.4:+92541477 | None:intergenic |
| TTCCCATTTCGATTATCTTT+TGG | 0.253044 | 3.4:+92545005 | None:intergenic |
| GTGGTGGTGGATCCTCTTCC+AGG | 0.256318 | 3.4:-92544404 | MS.gene80195:CDS |
| CACTGGCTGCTTGACAGGTT+TGG | 0.265314 | 3.4:+92544557 | None:intergenic |
| AAAGCACTCAGCCAGGAAAT+TGG | 0.293936 | 3.4:-92544439 | MS.gene80195:CDS |
| GAATGCCAGGTCTTTCTTCC+AGG | 0.300277 | 3.4:-92542179 | MS.gene80195:intron |
| AAAACTGCTGGTACAGATTC+AGG | 0.303408 | 3.4:-92544501 | MS.gene80195:CDS |
| AGATGAGGAGTTCAATGATT+TGG | 0.311693 | 3.4:-92544934 | MS.gene80195:CDS |
| CACCAAGCAGGGCTTTAGTT+TGG | 0.323387 | 3.4:+92545139 | None:intergenic |
| CCAACCAATTCTTTCATAGA+TGG | 0.327431 | 3.4:+92546270 | None:intergenic |
| TTTCTCACTGGCTGCTTGAC+AGG | 0.329822 | 3.4:+92544552 | None:intergenic |
| ATCTTCAGATGATTTGATAT+CGG | 0.332179 | 3.4:+92544196 | None:intergenic |
| CTCAAGAACAAGTGTCATAA+TGG | 0.335249 | 3.4:+92545402 | None:intergenic |
| CTCGTTATCATCCAATTTCC+TGG | 0.347155 | 3.4:+92544428 | None:intergenic |
| CCTGGCATTCCTTGCTTAGT+TGG | 0.353048 | 3.4:+92542192 | None:intergenic |
| TGATTTGCTTTCTCCACTCC+TGG | 0.366420 | 3.4:-92545359 | MS.gene80195:CDS |
| TCGCCAAAAGATAATCGAAA+TGG | 0.369344 | 3.4:-92545008 | MS.gene80195:CDS |
| GCAATTCGCATAGACGTTCT+AGG | 0.374167 | 3.4:+92546300 | None:intergenic |
| TTCCCGATTGCCCGGAAATT+GGG | 0.382628 | 3.4:-92545188 | MS.gene80195:CDS |
| TTAGACTTGACTGAAGGTTT+TGG | 0.386181 | 3.4:+92541372 | None:intergenic |
| TGCTCCATCTATGAAAGAAT+TGG | 0.389043 | 3.4:-92546274 | MS.gene80195:CDS |
| GACCCTCTCTCCCAATTTCC+GGG | 0.390697 | 3.4:+92545178 | None:intergenic |
| ATTTGTAGTGGTGGAGCATC+AGG | 0.391514 | 3.4:-92541624 | MS.gene80195:intron |
| TCTCCCAATTTCCGGGCAAT+CGG | 0.396259 | 3.4:+92545185 | None:intergenic |
| CATCTATGAAAGAATTGGTT+GGG | 0.401175 | 3.4:-92546269 | MS.gene80195:CDS |
| TCAAAGGGTGTACTGAAGTT+TGG | 0.402194 | 3.4:-92541591 | MS.gene80195:CDS |
| ATCAATGGCGTTTGATCAAA+AGG | 0.402831 | 3.4:-92546999 | None:intergenic |
| CAATGTTGAATCTCAAGTTA+TGG | 0.415971 | 3.4:-92544724 | MS.gene80195:CDS |
| ATCTGAAGATGAAAAGTTAG+AGG | 0.418816 | 3.4:-92544183 | MS.gene80195:CDS |
| TTCATTTGATCATCATCATA+AGG | 0.422883 | 3.4:+92546156 | None:intergenic |
| GGCGTTTGATCAAAAGGAAC+TGG | 0.431509 | 3.4:-92546993 | MS.gene80195:CDS |
| TTGAAGTATTAAATCTTGCC+AGG | 0.435890 | 3.4:-92542682 | MS.gene80195:CDS |
| TTACTTAGCAAAGGTGGAAC+AGG | 0.436311 | 3.4:-92546325 | MS.gene80195:CDS |
| TAAGCCGATCGTACGAGAAT+AGG | 0.436698 | 3.4:-92545971 | MS.gene80195:CDS |
| GAGAACATTGGGTATATCTC+TGG | 0.436803 | 3.4:-92545108 | MS.gene80195:CDS |
| TAGCTTCCTTAGCTTCCTCT+TGG | 0.437976 | 3.4:+92545054 | None:intergenic |
| GAGGAGACTACCACGACAAA+TGG | 0.438286 | 3.4:-92544164 | MS.gene80195:CDS |
| TAACTGCATAAGCAACTTCC+TGG | 0.448796 | 3.4:+92544763 | None:intergenic |
| CTCTGCAACCTCGACATTTG+AGG | 0.454625 | 3.4:+92544623 | None:intergenic |
| CCCAAAGACTGCTGCTTCTG+AGG | 0.456966 | 3.4:-92541310 | MS.gene80195:CDS |
| CTCCCAATTTCCGGGCAATC+GGG | 0.457215 | 3.4:+92545186 | None:intergenic |
| TCTGCAACCTCGACATTTGA+GGG | 0.459300 | 3.4:+92544624 | None:intergenic |
| AAATCAGCGCATCACATTCA+AGG | 0.460455 | 3.4:+92545895 | None:intergenic |
| TGGATCCTCTTCCAGGCAGC+TGG | 0.464531 | 3.4:-92544397 | MS.gene80195:CDS |
| CTCACTGCTTGCACCAAGCA+GGG | 0.464741 | 3.4:+92545128 | None:intergenic |
| CGCCAAAAGATAATCGAAAT+GGG | 0.466756 | 3.4:-92545007 | MS.gene80195:CDS |
| CTCAGAATCACTAACAGTCT+TGG | 0.467604 | 3.4:+92541533 | None:intergenic |
| GTGCAAGCAGTGAGAACATT+GGG | 0.468297 | 3.4:-92545119 | MS.gene80195:CDS |
| CTATCAGGAGTCTGATATCA+TGG | 0.468949 | 3.4:-92543919 | MS.gene80195:intron |
| TTTCTTATCTACCAGCTGCC+TGG | 0.470755 | 3.4:+92544386 | None:intergenic |
| TGACCTTTGCAACAGTTTCG+AGG | 0.471117 | 3.4:+92545940 | None:intergenic |
| AAGAAGCCACCAAGAAGAGC+AGG | 0.472325 | 3.4:-92544884 | MS.gene80195:CDS |
| TCTCACTGCTTGCACCAAGC+AGG | 0.474746 | 3.4:+92545127 | None:intergenic |
| CACTGTCGACAGTGGTGGCA+AGG | 0.476270 | 3.4:-92541259 | MS.gene80195:CDS |
| GTTTGGATCCGCAGCTTTCG+AGG | 0.478725 | 3.4:+92545156 | None:intergenic |
| AGTACTTACTGACGATCCTT+CGG | 0.483797 | 3.4:+92543852 | None:intergenic |
| ATCATCATCATAAGGAGTAT+CGG | 0.486302 | 3.4:+92546164 | None:intergenic |
| TCCTTGCTTAGTTGGTTCAT+CGG | 0.486584 | 3.4:+92542200 | None:intergenic |
| GATACAAAAGTCAAGACATC+AGG | 0.488137 | 3.4:-92541156 | MS.gene80195:CDS |
| TAAATCTTGCCAGGGAAAAG+TGG | 0.488497 | 3.4:-92542673 | MS.gene80195:CDS |
| GCAAGTGCAGCTTTCACATC+CGG | 0.489095 | 3.4:+92546222 | None:intergenic |
| ATCTACCAGCTGCCTGGAAG+AGG | 0.493633 | 3.4:+92544392 | None:intergenic |
| TTCTCCTATTCTCGTACGAT+CGG | 0.494206 | 3.4:+92545967 | None:intergenic |
| GATGATAACGAGGGTGGTGG+TGG | 0.497097 | 3.4:-92544417 | MS.gene80195:CDS |
| CATTATGACACTTGTTCTTG+AGG | 0.498006 | 3.4:-92545401 | MS.gene80195:CDS |
| CCCATCGTTTGTGACTGACT+TGG | 0.499177 | 3.4:+92544974 | None:intergenic |
| CTCAGAAGCAGCAGTCTTTG+GGG | 0.500613 | 3.4:+92541311 | None:intergenic |
| ATCAGGATCAAGTAAATCAA+AGG | 0.501024 | 3.4:-92541607 | MS.gene80195:CDS |
| TTAGTTGGTTCATCGGAACT+TGG | 0.501735 | 3.4:+92542207 | None:intergenic |
| GCAGCTTTCACATCCGGATC+CGG | 0.502993 | 3.4:+92546228 | None:intergenic |
| GACATCAGGTGATGCCATGA+AGG | 0.505863 | 3.4:-92541142 | MS.gene80195:CDS |
| CCAACTAAGCAAGGAATGCC+AGG | 0.506972 | 3.4:-92542192 | MS.gene80195:CDS |
| GAAGAGCAGCTTATTCAAGC+TGG | 0.507054 | 3.4:-92546971 | MS.gene80195:CDS |
| AACGATGGGGTTGCACGCGT+TGG | 0.509353 | 3.4:-92544960 | MS.gene80195:CDS |
| AAGTGTCATAATGGTTTCCA+TGG | 0.511959 | 3.4:+92545411 | None:intergenic |
| TGTCAAGCAGCCAGTGAGAA+AGG | 0.513418 | 3.4:-92544550 | MS.gene80195:CDS |
| TCATCATCATAAGGAGTATC+GGG | 0.514597 | 3.4:+92546165 | None:intergenic |
| TGACCAAGCACCTTTCTCAC+TGG | 0.515686 | 3.4:+92544540 | None:intergenic |
| GAGGAGTTCAATGATTTGGA+TGG | 0.521328 | 3.4:-92544930 | MS.gene80195:CDS |
| TCCTGCTTAGACTTGACTGA+AGG | 0.526416 | 3.4:+92541366 | None:intergenic |
| TTTGGATATTCCACTCTTTG+GGG | 0.526750 | 3.4:+92541341 | None:intergenic |
| GAAGTTTGGTCAGAAGTCTA+CGG | 0.527431 | 3.4:-92541577 | MS.gene80195:CDS |
| AGAAGCTCATCCACCGATGA+AGG | 0.533354 | 3.4:+92546929 | None:intergenic |
| ACCTTCAGTCAAGTCTAAGC+AGG | 0.533676 | 3.4:-92541367 | MS.gene80195:CDS |
| GGAAAGAGGAAACACGCCTC+GGG | 0.536558 | 3.4:-92544143 | MS.gene80195:CDS |
| GATGATTACAGTGAAGTACT+TGG | 0.537086 | 3.4:-92545086 | MS.gene80195:CDS |
| TTCTTAATGCTCTCCAGGAG+TGG | 0.538291 | 3.4:+92545346 | None:intergenic |
| CCAAAGACTGCTGCTTCTGA+GGG | 0.540580 | 3.4:-92541309 | MS.gene80195:CDS |
| GATGATTTGATATCGGACCT+TGG | 0.541074 | 3.4:+92544203 | None:intergenic |
| ATCCAAACTAAAGCCCTGCT+TGG | 0.543376 | 3.4:-92545141 | MS.gene80195:CDS |
| AAGGTGCTTGGTCAGAACTC+AGG | 0.544043 | 3.4:-92544531 | MS.gene80195:CDS |
| AGAGGAAGCTAAGGAAGCTA+AGG | 0.545314 | 3.4:-92545051 | MS.gene80195:CDS |
| TGGTCCTCGTGTGAGGAACT+CGG | 0.546241 | 3.4:+92544783 | None:intergenic |
| TTGGATGATAACGAGGGTGG+TGG | 0.548250 | 3.4:-92544420 | MS.gene80195:CDS |
| TCGGTGTAAGACTTGAAGTA+TGG | 0.548327 | 3.4:-92543878 | MS.gene80195:CDS |
| CCATCTATGAAAGAATTGGT+TGG | 0.549801 | 3.4:-92546270 | MS.gene80195:CDS |
| AAGTTTGGTCAGAAGTCTAC+GGG | 0.550142 | 3.4:-92541576 | MS.gene80195:CDS |
| CCAAGTCAGTCACAAACGAT+GGG | 0.552533 | 3.4:-92544974 | MS.gene80195:CDS |
| GAACATGATCAAAACCTTGT+CGG | 0.553166 | 3.4:-92543897 | MS.gene80195:CDS |
| TCTGCTACACAGACAATGAC+TGG | 0.554858 | 3.4:-92541456 | MS.gene80195:CDS |
| GCAGATTTCGTTGAATGACT+CGG | 0.555015 | 3.4:+92544855 | None:intergenic |
| TTCCAAGACAAGCAAAAGAA+AGG | 0.556484 | 3.4:-92541412 | MS.gene80195:CDS |
| TGCCCGGAAATTGGGAGAGA+GGG | 0.556592 | 3.4:-92545180 | MS.gene80195:CDS |
| TGATCCTATTCAGGCCTGCA+AGG | 0.559546 | 3.4:-92542242 | MS.gene80195:intron |
| AACTTCCTGGTCCTCGTGTG+AGG | 0.560010 | 3.4:+92544776 | None:intergenic |
| GGAAGCTAAGGCCATTAAAG+AGG | 0.561082 | 3.4:-92545039 | MS.gene80195:CDS |
| GAGTTCCTCACACGAGGACC+AGG | 0.561728 | 3.4:-92544781 | MS.gene80195:CDS |
| AGGAAATGGTTTCTTCTCCA+AGG | 0.561969 | 3.4:-92544220 | MS.gene80195:CDS |
| TCAGGATCAAGTAAATCAAA+GGG | 0.562001 | 3.4:-92541606 | MS.gene80195:CDS |
| ACTGTCGACAGTGGTGGCAA+GGG | 0.563929 | 3.4:-92541258 | MS.gene80195:CDS |
| GCTTGCAGATCCTCCTTCAT+CGG | 0.566230 | 3.4:-92546942 | MS.gene80195:CDS |
| CAGATCATGTGTGGTAATGT+TGG | 0.566430 | 3.4:-92545919 | MS.gene80195:CDS |
| CTTGCCACCACTGTCGACAG+TGG | 0.567493 | 3.4:+92541260 | None:intergenic |
| GAAAATCATTCAGAGAAACT+TGG | 0.568982 | 3.4:-92544669 | MS.gene80195:CDS |
| TGCAGATCCTCCTTCATCGG+TGG | 0.570652 | 3.4:-92546939 | MS.gene80195:CDS |
| AATTTGCCAAGAGGAAGCTA+AGG | 0.573068 | 3.4:-92545060 | MS.gene80195:CDS |
| TGGAAAGAGGAAACACGCCT+CGG | 0.573217 | 3.4:-92544144 | MS.gene80195:CDS |
| TGTGATTTCACTGATGCAAG+CGG | 0.573290 | 3.4:+92546200 | None:intergenic |
| AAGAGCAGCTTATTCAAGCT+GGG | 0.574013 | 3.4:-92546970 | MS.gene80195:CDS |
| CTTCAAGTCTTACACCGACA+AGG | 0.576413 | 3.4:+92543883 | None:intergenic |
| AATCCTCGAAACTGTTGCAA+AGG | 0.577278 | 3.4:-92545943 | MS.gene80195:CDS |
| CAAGACTGTTAGTGATTCTG+AGG | 0.578913 | 3.4:-92541532 | MS.gene80195:CDS |
| TGAGAGTTACTTAGCAAAGG+TGG | 0.580130 | 3.4:-92546331 | MS.gene80195:CDS |
| ATCTATGAAAGAATTGGTTG+GGG | 0.581374 | 3.4:-92546268 | MS.gene80195:CDS |
| CTACCACGACAAATGGAAAG+AGG | 0.582950 | 3.4:-92544157 | MS.gene80195:CDS |
| TGAAGTATTAAATCTTGCCA+GGG | 0.586714 | 3.4:-92542681 | MS.gene80195:CDS |
| TCCGATGAACCAACTAAGCA+AGG | 0.588293 | 3.4:-92542201 | MS.gene80195:CDS |
| AAGGACAGCACTCCTATAAG+TGG | 0.588644 | 3.4:-92541489 | MS.gene80195:CDS |
| GGTAAATCCAAGAACATTGG+TGG | 0.590164 | 3.4:-92541435 | MS.gene80195:CDS |
| TCGTCAGGGAGGCTGTCACT+AGG | 0.590519 | 3.4:+92544690 | None:intergenic |
| CAGCCAGTGAGAAAGGTGCT+TGG | 0.593042 | 3.4:-92544543 | MS.gene80195:CDS |
| ATCAGATGTTTCTGCAAGCG+AGG | 0.596014 | 3.4:-92541187 | MS.gene80195:CDS |
| AAGCAGGAAACCCCAAAGAG+TGG | 0.598967 | 3.4:-92541351 | MS.gene80195:CDS |
| GAGTGGAGAAAGCAAATCAA+AGG | 0.599004 | 3.4:+92545363 | None:intergenic |
| ACTGGTAAATCCAAGAACAT+TGG | 0.599698 | 3.4:-92541438 | MS.gene80195:CDS |
| TCCAAGTCAGTCACAAACGA+TGG | 0.601409 | 3.4:-92544975 | MS.gene80195:CDS |
| CTCAAATGTCGAGGTTGCAG+AGG | 0.601585 | 3.4:-92544622 | MS.gene80195:CDS |
| ACTTGAGAGTTACTTAGCAA+AGG | 0.603086 | 3.4:-92546334 | MS.gene80195:CDS |
| TTATGATGATGATCAAATGA+AGG | 0.607368 | 3.4:-92546154 | MS.gene80195:intron |
| TTGCCCGGAAATTGGGAGAG+AGG | 0.608426 | 3.4:-92545181 | MS.gene80195:CDS |
| TTTCCTCTTTCCATTTGTCG+TGG | 0.609734 | 3.4:+92544154 | None:intergenic |
| CAGGAAATTGGATGATAACG+AGG | 0.611071 | 3.4:-92544427 | MS.gene80195:CDS |
| TGCACGCGTTGGAGAAGATG+AGG | 0.613913 | 3.4:-92544949 | MS.gene80195:CDS |
| GGGAGGCTGTCACTAGGTGA+AGG | 0.615922 | 3.4:+92544696 | None:intergenic |
| ATGCAACACATACATTTCAG+TGG | 0.620376 | 3.4:+92542511 | None:intergenic |
| ACATCAGGTGATGCCATGAA+GGG | 0.620593 | 3.4:-92541141 | MS.gene80195:CDS |
| AGCTGATTCAGATGCAGATG+AGG | 0.623229 | 3.4:-92542639 | MS.gene80195:intron |
| CTGTCGACAGTGGTGGCAAG+GGG | 0.625265 | 3.4:-92541257 | MS.gene80195:CDS |
| AAACAAAGTGGGTCTGCTAG+TGG | 0.628936 | 3.4:-92544474 | MS.gene80195:CDS |
| ACAAACCTGGAAGAAAGACC+TGG | 0.629724 | 3.4:+92542174 | None:intergenic |
| GGTGCAAGCAGTGAGAACAT+TGG | 0.629894 | 3.4:-92545120 | MS.gene80195:CDS |
| AATCAGGGATCATCATCCAA+AGG | 0.631340 | 3.4:-92545446 | MS.gene80195:intron |
| GTGTAAGACTTGAAGTATGG+TGG | 0.634803 | 3.4:-92543875 | MS.gene80195:CDS |
| ACTTGGTTCAATTTGCCAAG+AGG | 0.637801 | 3.4:-92545069 | MS.gene80195:CDS |
| AGCTCATCCACCGATGAAGG+AGG | 0.640218 | 3.4:+92546932 | None:intergenic |
| AGATAACCCCTCAAATGTCG+AGG | 0.643896 | 3.4:-92544631 | MS.gene80195:CDS |
| ACTTGAAGTATGGTGGCCGA+AGG | 0.646361 | 3.4:-92543868 | MS.gene80195:CDS |
| CTGCAACCTCGACATTTGAG+GGG | 0.648380 | 3.4:+92544625 | None:intergenic |
| GAGAGGGTCCTCGAAAGCTG+CGG | 0.648640 | 3.4:-92545164 | MS.gene80195:CDS |
| AAGTCCACTGTCGACAGTGG+TGG | 0.650146 | 3.4:-92541264 | MS.gene80195:CDS |
| CAGGAAGAAGAAAGTGATCG+TGG | 0.654410 | 3.4:-92542548 | MS.gene80195:CDS |
| AGATGTTTCTGCAAGCGAGG+AGG | 0.672748 | 3.4:-92541184 | MS.gene80195:CDS |
| TTTGGTCAGAAGTCTACGGG+TGG | 0.672786 | 3.4:-92541573 | MS.gene80195:CDS |
| AGGAAATTGGATGATAACGA+GGG | 0.693056 | 3.4:-92544426 | MS.gene80195:CDS |
| AAATTGGATGATAACGAGGG+TGG | 0.699562 | 3.4:-92544423 | MS.gene80195:CDS |
| CAAGTCAGTCACAAACGATG+GGG | 0.710724 | 3.4:-92544973 | MS.gene80195:CDS |
| GAAAAGTCCACTGTCGACAG+TGG | 0.714672 | 3.4:-92541267 | MS.gene80195:CDS |
| AGTTCCGAGTTCCTCACACG+AGG | 0.722443 | 3.4:-92544787 | MS.gene80195:CDS |
| TGCAAAGGTCAGATCATGTG+TGG | 0.730397 | 3.4:-92545928 | MS.gene80195:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAGATATAACTTTAAA+TGG | - | chr3.4:92545123-92545142 | MS.gene80195:CDS | 10.0% |
| !!! | CATTTTTTTTTTGTTAATAT+AGG | - | chr3.4:92543874-92543893 | MS.gene80195:CDS | 10.0% |
| !! | AAATGCAAACAAAATAATTT+AGG | + | chr3.4:92545707-92545726 | None:intergenic | 15.0% |
| !! | ATATATTAACGATTTAAACA+AGG | + | chr3.4:92542864-92542883 | None:intergenic | 15.0% |
| !! | ATTATAACAAAGCAAATTTA+GGG | + | chr3.4:92541409-92541428 | None:intergenic | 15.0% |
| !! | GAAAATATGATAGTAAATAA+CGG | + | chr3.4:92546462-92546481 | None:intergenic | 15.0% |
| !! | TTATATTCTACAAAATGAAA+AGG | + | chr3.4:92544836-92544855 | None:intergenic | 15.0% |
| !!! | ATTTTCAGTTTTTTTTATTC+TGG | - | chr3.4:92541264-92541283 | MS.gene80195:CDS | 15.0% |
| !!! | CTTTTAAATAAGAAATTCAT+TGG | + | chr3.4:92545072-92545091 | None:intergenic | 15.0% |
| !!! | TAAATTTGCTTTGTTATAAT+GGG | - | chr3.4:92541409-92541428 | MS.gene80195:CDS | 15.0% |
| !!! | TATAAAAGGTTGAATTTTTT+AGG | - | chr3.4:92541685-92541704 | MS.gene80195:intron | 15.0% |
| !!! | TGTAAAAACAATTTTTTAAC+AGG | + | chr3.4:92546177-92546196 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTTTTTGTGTCT+TGG | - | chr3.4:92541345-92541364 | MS.gene80195:CDS | 15.0% |
| !!! | TTTTTTGTTAATATAGGAAA+TGG | - | chr3.4:92543880-92543899 | MS.gene80195:CDS | 15.0% |
| !! | AATATAATACAGTATGATGT+TGG | + | chr3.4:92546228-92546247 | None:intergenic | 20.0% |
| !! | AATTAAGCTCCATATAATAA+AGG | + | chr3.4:92545775-92545794 | None:intergenic | 20.0% |
| !! | AATTGGGTTAATAAATCAAA+GGG | - | chr3.4:92546043-92546062 | MS.gene80195:intron | 20.0% |
| !! | AATTGTCATTAATTTAGACA+CGG | + | chr3.4:92545535-92545554 | None:intergenic | 20.0% |
| !! | ACATCATACTGTATTATATT+AGG | - | chr3.4:92546228-92546247 | MS.gene80195:CDS | 20.0% |
| !! | AGGATATTTAAACTAAAAGA+AGG | - | chr3.4:92544742-92544761 | MS.gene80195:CDS | 20.0% |
| !! | CAAATGAAGATACAATTAAT+TGG | + | chr3.4:92542105-92542124 | None:intergenic | 20.0% |
| !! | CATTATAACAAAGCAAATTT+AGG | + | chr3.4:92541410-92541429 | None:intergenic | 20.0% |
| !!! | AAAGCTTTTCATTTGATATT+TGG | - | chr3.4:92542599-92542618 | MS.gene80195:intron | 20.0% |
| !!! | AAATTTGCTTTGTTATAATG+GGG | - | chr3.4:92541410-92541429 | MS.gene80195:CDS | 20.0% |
| !!! | ATGCTTGTTTTTTCTATTTT+AGG | - | chr3.4:92545388-92545407 | MS.gene80195:CDS | 20.0% |
| !!! | ATGTTGATTATGATATATAC+TGG | + | chr3.4:92541557-92541576 | None:intergenic | 20.0% |
| !!! | ATTAATGACAATTATTTCTG+TGG | - | chr3.4:92545542-92545561 | MS.gene80195:intron | 20.0% |
| !!! | ATTTTTAAAATTCCACTGAT+TGG | + | chr3.4:92541313-92541332 | None:intergenic | 20.0% |
| !!! | CTAAATTTGCTTTGTTATAA+TGG | - | chr3.4:92541408-92541427 | MS.gene80195:CDS | 20.0% |
| !!! | TAAACAGTTTTCTTTTAACT+CGG | - | chr3.4:92542479-92542498 | MS.gene80195:intron | 20.0% |
| !!! | TATTTTTCTTGTCATTTTGA+TGG | - | chr3.4:92544157-92544176 | MS.gene80195:CDS | 20.0% |
| !!! | TGTTGATTATGATATATACT+GGG | + | chr3.4:92541556-92541575 | None:intergenic | 20.0% |
| !!! | TTTTTTTGATACAGTTTCAA+TGG | - | chr3.4:92541993-92542012 | MS.gene80195:intron | 20.0% |
| ! | AAAGATTATGGTGTAATGTA+AGG | + | chr3.4:92545511-92545530 | None:intergenic | 25.0% |
| ! | AACAAGACCAAATTAAGAAA+CGG | + | chr3.4:92545835-92545854 | None:intergenic | 25.0% |
| ! | AATAACAAAAAATTGCTCCT+AGG | + | chr3.4:92542286-92542305 | None:intergenic | 25.0% |
| ! | AATAGAACATAAAAGCTCTA+AGG | + | chr3.4:92542460-92542479 | None:intergenic | 25.0% |
| ! | AATAGACCATAAAGAATAGA+AGG | + | chr3.4:92544988-92545007 | None:intergenic | 25.0% |
| ! | AATTGGACATATCAGAAAAA+AGG | + | chr3.4:92545996-92546015 | None:intergenic | 25.0% |
| ! | ACAAATATATGATTGTTTGC+AGG | - | chr3.4:92544873-92544892 | MS.gene80195:CDS | 25.0% |
| ! | ACTCAAAATCATAATCTACT+AGG | + | chr3.4:92542836-92542855 | None:intergenic | 25.0% |
| ! | AGTAAAACATACAAAAGTCT+TGG | - | chr3.4:92541711-92541730 | MS.gene80195:intron | 25.0% |
| ! | ATAACAAAAAATTGCTCCTA+GGG | + | chr3.4:92542285-92542304 | None:intergenic | 25.0% |
| ! | ATAGACCATAAAGAATAGAA+GGG | + | chr3.4:92544987-92545006 | None:intergenic | 25.0% |
| ! | ATATTTGATATACCAATCAG+TGG | - | chr3.4:92541298-92541317 | MS.gene80195:CDS | 25.0% |
| ! | ATCTTCAGATGATTTGATAT+CGG | + | chr3.4:92543921-92543940 | None:intergenic | 25.0% |
| ! | ATGAAATCACACAAAACATT+AGG | + | chr3.4:92544453-92544472 | None:intergenic | 25.0% |
| ! | ATTCAATGACAATGTATTGA+TGG | - | chr3.4:92546129-92546148 | MS.gene80195:intron | 25.0% |
| ! | ATTCTTTATGGTCTATTGTA+TGG | - | chr3.4:92544991-92545010 | MS.gene80195:CDS | 25.0% |
| ! | ATTGTCATTAATTTAGACAC+GGG | + | chr3.4:92545534-92545553 | None:intergenic | 25.0% |
| ! | ATTTGGAGAAATTTATACGT+GGG | - | chr3.4:92542616-92542635 | MS.gene80195:intron | 25.0% |
| ! | CAATTGGGTTAATAAATCAA+AGG | - | chr3.4:92546042-92546061 | MS.gene80195:intron | 25.0% |
| ! | TATATTGATATTGACAAACC+TGG | + | chr3.4:92545956-92545975 | None:intergenic | 25.0% |
| ! | TATTAAGCTAGAAACTAGAA+AGG | - | chr3.4:92545290-92545309 | MS.gene80195:intron | 25.0% |
| ! | TATTTGGAGAAATTTATACG+TGG | - | chr3.4:92542615-92542634 | MS.gene80195:intron | 25.0% |
| ! | TCATAATCAACATCAATCTT+TGG | - | chr3.4:92541564-92541583 | MS.gene80195:CDS | 25.0% |
| ! | TCATACTGTATTATATTAGG+AGG | - | chr3.4:92546231-92546250 | MS.gene80195:CDS | 25.0% |
| ! | TTCATTGAAGAAAAAAGACT+TGG | - | chr3.4:92546888-92546907 | MS.gene80195:intron | 25.0% |
| ! | TTCATTTGATCATCATCATA+AGG | + | chr3.4:92541961-92541980 | None:intergenic | 25.0% |
| !! | CTATCTGTGTTTTCATTTTA+TGG | - | chr3.4:92541629-92541648 | MS.gene80195:intron | 25.0% |
| !! | GAAAGCACAAAAAAAATCTT+CGG | + | chr3.4:92545269-92545288 | None:intergenic | 25.0% |
| !! | TTATGATGATGATCAAATGA+AGG | - | chr3.4:92541960-92541979 | MS.gene80195:intron | 25.0% |
| !!! | AAACAGTTTTCTTTTAACTC+GGG | - | chr3.4:92542480-92542499 | MS.gene80195:intron | 25.0% |
| !!! | AATGTCATATCCTGTTTTTT+TGG | - | chr3.4:92544765-92544784 | MS.gene80195:CDS | 25.0% |
| !!! | ATATCTAGTTTTTGCATACA+TGG | - | chr3.4:92544391-92544410 | MS.gene80195:CDS | 25.0% |
| !!! | ATGTCATATCCTGTTTTTTT+GGG | - | chr3.4:92544766-92544785 | MS.gene80195:CDS | 25.0% |
| !!! | ATTTAGGGTACATTTTCTTT+TGG | - | chr3.4:92544081-92544100 | MS.gene80195:intron | 25.0% |
| !!! | CTTGTTTTTTCTATTTTAGG+TGG | - | chr3.4:92545391-92545410 | MS.gene80195:CDS | 25.0% |
| !!! | GATGTATTGATTAGGATTTA+GGG | - | chr3.4:92544066-92544085 | MS.gene80195:intron | 25.0% |
| !!! | TCTTAATTTGGTCTTGTTTA+TGG | - | chr3.4:92545837-92545856 | MS.gene80195:intron | 25.0% |
| !!! | TGATGTATTGATTAGGATTT+AGG | - | chr3.4:92544065-92544084 | MS.gene80195:intron | 25.0% |
| AAAACACAGATAGTTCCATT+TGG | + | chr3.4:92541622-92541641 | None:intergenic | 30.0% | |
| AAAACATTGATGTGGAATTG+TGG | - | chr3.4:92544716-92544735 | MS.gene80195:CDS | 30.0% | |
| AAACACAGATAGTTCCATTT+GGG | + | chr3.4:92541621-92541640 | None:intergenic | 30.0% | |
| AAACATTGATGTGGAATTGT+GGG | - | chr3.4:92544717-92544736 | MS.gene80195:CDS | 30.0% | |
| AAATTAAGAAACGGCAAGAA+AGG | + | chr3.4:92545826-92545845 | None:intergenic | 30.0% | |
| ACAAAAAAAATCTTCGGTTG+GGG | + | chr3.4:92545263-92545282 | None:intergenic | 30.0% | |
| ACTATTGCAGTTTACAATAC+AGG | + | chr3.4:92544581-92544600 | None:intergenic | 30.0% | |
| ACTTAAAAGCCCAAAAAAAC+AGG | + | chr3.4:92544778-92544797 | None:intergenic | 30.0% | |
| ATAATAACTAGTGTGATACG+CGG | + | chr3.4:92541521-92541540 | None:intergenic | 30.0% | |
| ATCAGGATCAAGTAAATCAA+AGG | - | chr3.4:92546507-92546526 | MS.gene80195:intron | 30.0% | |
| ATCTATGAAAGAATTGGTTG+GGG | - | chr3.4:92541846-92541865 | MS.gene80195:intron | 30.0% | |
| ATCTGAAGATGAAAAGTTAG+AGG | - | chr3.4:92543931-92543950 | MS.gene80195:intron | 30.0% | |
| ATGGATGAAAAAACATCCTT+TGG | + | chr3.4:92542687-92542706 | None:intergenic | 30.0% | |
| ATGTGAATGTAGCAACTATA+TGG | + | chr3.4:92542388-92542407 | None:intergenic | 30.0% | |
| ATTAAGAAAAACAACGAGGT+TGG | - | chr3.4:92542783-92542802 | MS.gene80195:intron | 30.0% | |
| ATTCAGGCAAAAAACAAAGT+GGG | - | chr3.4:92543629-92543648 | MS.gene80195:intron | 30.0% | |
| ATTGAAGAAAAAAGACTTGG+AGG | - | chr3.4:92546891-92546910 | MS.gene80195:intron | 30.0% | |
| ATTGTTCTTTGATCCTATTC+AGG | - | chr3.4:92545863-92545882 | MS.gene80195:CDS | 30.0% | |
| CAATGTTGAATCTCAAGTTA+TGG | - | chr3.4:92543390-92543409 | MS.gene80195:intron | 30.0% | |
| CACAAAAAAAATCTTCGGTT+GGG | + | chr3.4:92545264-92545283 | None:intergenic | 30.0% | |
| CATCTATGAAAGAATTGGTT+GGG | - | chr3.4:92541845-92541864 | MS.gene80195:intron | 30.0% | |
| GAAAATCATTCAGAGAAACT+TGG | - | chr3.4:92543445-92543464 | MS.gene80195:intron | 30.0% | |
| GACAAATCCAAGTAGAAAAT+TGG | + | chr3.4:92546013-92546032 | None:intergenic | 30.0% | |
| GATTCATGACACAGTATAAA+AGG | - | chr3.4:92541671-92541690 | MS.gene80195:intron | 30.0% | |
| GCATGTCAAAAATTCAGAAA+TGG | + | chr3.4:92544296-92544315 | None:intergenic | 30.0% | |
| TAAGCTCCATATAATAAAGG+AGG | + | chr3.4:92545772-92545791 | None:intergenic | 30.0% | |
| TAGACCATAAAGAATAGAAG+GGG | + | chr3.4:92544986-92545005 | None:intergenic | 30.0% | |
| TCAGGATCAAGTAAATCAAA+GGG | - | chr3.4:92546508-92546527 | MS.gene80195:intron | 30.0% | |
| TGAAGTTAGCAGAAAGTTTA+AGG | - | chr3.4:92546606-92546625 | MS.gene80195:intron | 30.0% | |
| TTTGGAGAAATTTATACGTG+GGG | - | chr3.4:92542617-92542636 | MS.gene80195:intron | 30.0% | |
| ! | AATCATTGTGTAGACCTTTT+TGG | - | chr3.4:92544506-92544525 | MS.gene80195:CDS | 30.0% |
| ! | ATCATCATCATAAGGAGTAT+CGG | + | chr3.4:92541953-92541972 | None:intergenic | 30.0% |
| ! | ATTGTTTGCAGGTTTTACAA+AGG | - | chr3.4:92544884-92544903 | MS.gene80195:CDS | 30.0% |
| ! | GAATCAATCATCTTTTCAGA+TGG | + | chr3.4:92543289-92543308 | None:intergenic | 30.0% |
| ! | GATATGTCCAATTTTCTACT+TGG | - | chr3.4:92546003-92546022 | MS.gene80195:CDS | 30.0% |
| ! | GTCATTGTTATTAATCATCG+TGG | - | chr3.4:92542892-92542911 | MS.gene80195:intron | 30.0% |
| ! | TCTGATTATTTCTTCTCCTT+TGG | - | chr3.4:92545016-92545035 | MS.gene80195:CDS | 30.0% |
| ! | TGAAGTATTAAATCTTGCCA+GGG | - | chr3.4:92545433-92545452 | MS.gene80195:CDS | 30.0% |
| ! | TGCTAATGAATTTTTCTTGC+AGG | - | chr3.4:92542072-92542091 | MS.gene80195:intron | 30.0% |
| ! | TTCCCATTTCGATTATCTTT+TGG | + | chr3.4:92543112-92543131 | None:intergenic | 30.0% |
| ! | TTGAAGTATTAAATCTTGCC+AGG | - | chr3.4:92545432-92545451 | MS.gene80195:CDS | 30.0% |
| ! | TTTCTTGCCGTTTCTTAATT+TGG | - | chr3.4:92545825-92545844 | MS.gene80195:intron | 30.0% |
| ! | TTTTCGCAAAAAGAAACACA+AGG | - | chr3.4:92544925-92544944 | MS.gene80195:CDS | 30.0% |
| !! | AACAGTTTTCTTTTAACTCG+GGG | - | chr3.4:92542481-92542500 | MS.gene80195:intron | 30.0% |
| !! | CATGATGTGATGTATTGATT+AGG | - | chr3.4:92544058-92544077 | MS.gene80195:intron | 30.0% |
| !! | GTTTCAAAAAAGGTATCTGA+AGG | - | chr3.4:92543517-92543536 | MS.gene80195:intron | 30.0% |
| !!! | AAAGGATGTTTTTTCATCCA+TGG | - | chr3.4:92542686-92542705 | MS.gene80195:CDS | 30.0% |
| !!! | AGCATTTTTTGAAGACCATA+AGG | - | chr3.4:92542254-92542273 | MS.gene80195:intron | 30.0% |
| !!! | GTTGGGGTTTATTCTTTTTT+GGG | + | chr3.4:92545247-92545266 | None:intergenic | 30.0% |
| !!! | TTTTTTGTGTCTTGGATGTT+TGG | - | chr3.4:92541353-92541372 | MS.gene80195:CDS | 30.0% |
| AAAAGAAACACAAGGTGACT+TGG | - | chr3.4:92544933-92544952 | MS.gene80195:CDS | 35.0% | |
| AAGCTAGAAACTAGAAAGGT+TGG | - | chr3.4:92545294-92545313 | MS.gene80195:intron | 35.0% | |
| AAGTGTCATAATGGTTTCCA+TGG | + | chr3.4:92542706-92542725 | None:intergenic | 35.0% | |
| AAGTTCTGTGATTGCTAACT+AGG | + | chr3.4:92544137-92544156 | None:intergenic | 35.0% | |
| ACTGGTAAATCCAAGAACAT+TGG | - | chr3.4:92546676-92546695 | MS.gene80195:intron | 35.0% | |
| ACTGTGAGAAAACATTGATG+TGG | - | chr3.4:92544708-92544727 | MS.gene80195:CDS | 35.0% | |
| ACTTGAGAGTTACTTAGCAA+AGG | - | chr3.4:92541780-92541799 | MS.gene80195:intron | 35.0% | |
| AGATGAGGAGTTCAATGATT+TGG | - | chr3.4:92543180-92543199 | MS.gene80195:intron | 35.0% | |
| AGCTGGTAGATAAGAAAAAG+CGG | - | chr3.4:92543734-92543753 | MS.gene80195:intron | 35.0% | |
| ATGCAACACATACATTTCAG+TGG | + | chr3.4:92545606-92545625 | None:intergenic | 35.0% | |
| ATTCTTTCTGTAGATACGTC+TGG | - | chr3.4:92544107-92544126 | MS.gene80195:intron | 35.0% | |
| ATTGGAAGAAATAGTCAGAG+TGG | + | chr3.4:92545054-92545073 | None:intergenic | 35.0% | |
| ATTTGCATATCTATTCGCAC+TGG | - | chr3.4:92541479-92541498 | MS.gene80195:CDS | 35.0% | |
| CACGTTCCTCCTTTATTATA+TGG | - | chr3.4:92545763-92545782 | MS.gene80195:intron | 35.0% | |
| CATTATGACACTTGTTCTTG+AGG | - | chr3.4:92542713-92542732 | MS.gene80195:intron | 35.0% | |
| CCAACCAATTCTTTCATAGA+TGG | + | chr3.4:92541847-92541866 | None:intergenic | 35.0% | |
| CCATCTATGAAAGAATTGGT+TGG | - | chr3.4:92541844-92541863 | MS.gene80195:intron | 35.0% | |
| CGCCAAAAGATAATCGAAAT+GGG | - | chr3.4:92543107-92543126 | MS.gene80195:intron | 35.0% | |
| CTCAAGAACAAGTGTCATAA+TGG | + | chr3.4:92542715-92542734 | None:intergenic | 35.0% | |
| GAACATGATCAAAACCTTGT+CGG | - | chr3.4:92544217-92544236 | MS.gene80195:CDS | 35.0% | |
| GAATGTGTGTGTCTACTTTA+GGG | - | chr3.4:92545095-92545114 | MS.gene80195:CDS | 35.0% | |
| GACAGATCAGATCAAATTTG+AGG | + | chr3.4:92542359-92542378 | None:intergenic | 35.0% | |
| GAGCATTAAGAAAAACAACG+AGG | - | chr3.4:92542779-92542798 | MS.gene80195:intron | 35.0% | |
| GATACAAAAGTCAAGACATC+AGG | - | chr3.4:92546958-92546977 | MS.gene80195:CDS | 35.0% | |
| GATTCAGGCAAAAAACAAAG+TGG | - | chr3.4:92543628-92543647 | MS.gene80195:intron | 35.0% | |
| GATTTACTGCTACCACTTAT+AGG | + | chr3.4:92546640-92546659 | None:intergenic | 35.0% | |
| GCACAAAAAAAATCTTCGGT+TGG | + | chr3.4:92545265-92545284 | None:intergenic | 35.0% | |
| GCAGTTCAGAAACAGTAATT+TGG | + | chr3.4:92544665-92544684 | None:intergenic | 35.0% | |
| GCTTAATTGAATGTGTCTTG+TGG | - | chr3.4:92545787-92545806 | MS.gene80195:intron | 35.0% | |
| GTTTGGATATTCCACTCTTT+GGG | + | chr3.4:92546777-92546796 | None:intergenic | 35.0% | |
| TCGCCAAAAGATAATCGAAA+TGG | - | chr3.4:92543106-92543125 | MS.gene80195:intron | 35.0% | |
| TGAATGTGTGTGTCTACTTT+AGG | - | chr3.4:92545094-92545113 | MS.gene80195:CDS | 35.0% | |
| TGCTCCATCTATGAAAGAAT+TGG | - | chr3.4:92541840-92541859 | MS.gene80195:intron | 35.0% | |
| TGGACATATCAGAAAAAAGG+TGG | + | chr3.4:92545993-92546012 | None:intergenic | 35.0% | |
| TGTTTGGATATTCCACTCTT+TGG | + | chr3.4:92546778-92546797 | None:intergenic | 35.0% | |
| TTCCAAGACAAGCAAAAGAA+AGG | - | chr3.4:92546702-92546721 | MS.gene80195:intron | 35.0% | |
| TTGGAAGAAATAGTCAGAGT+GGG | + | chr3.4:92545053-92545072 | None:intergenic | 35.0% | |
| TTGGAGAAATTTATACGTGG+GGG | - | chr3.4:92542618-92542637 | MS.gene80195:intron | 35.0% | |
| TTTAGACACGGGAAAGATTA+TGG | + | chr3.4:92545523-92545542 | None:intergenic | 35.0% | |
| TTTCTACTTGGATTTGTCGT+GGG | - | chr3.4:92546015-92546034 | MS.gene80195:CDS | 35.0% | |
| TTTGGATATTCCACTCTTTG+GGG | + | chr3.4:92546776-92546795 | None:intergenic | 35.0% | |
| ! | ACATGCTAGATTTGAAATCC+TGG | - | chr3.4:92545158-92545177 | MS.gene80195:CDS | 35.0% |
| ! | ACCAAACATCTCAAGCTTTT+GGG | - | chr3.4:92542413-92542432 | MS.gene80195:intron | 35.0% |
| ! | AGGAAATTGGATGATAACGA+GGG | - | chr3.4:92543688-92543707 | MS.gene80195:intron | 35.0% |
| ! | ATCCTTTCTTTTGCTTGTCT+TGG | + | chr3.4:92546707-92546726 | None:intergenic | 35.0% |
| ! | ATCTGATCTAATCTTTTCCC+TGG | - | chr3.4:92541746-92541765 | MS.gene80195:intron | 35.0% |
| ! | CAACGACATATTGACTATTG+TGG | - | chr3.4:92544632-92544651 | MS.gene80195:CDS | 35.0% |
| ! | CATGCTAGATTTGAAATCCT+GGG | - | chr3.4:92545159-92545178 | MS.gene80195:CDS | 35.0% |
| ! | CATTTTATGGTGTAAGCTCT+GGG | - | chr3.4:92541642-92541661 | MS.gene80195:intron | 35.0% |
| ! | GATGATCCCTGATTTTCAAA+TGG | + | chr3.4:92542662-92542681 | None:intergenic | 35.0% |
| ! | GATGATTACAGTGAAGTACT+TGG | - | chr3.4:92543028-92543047 | MS.gene80195:intron | 35.0% |
| ! | TCATTTTATGGTGTAAGCTC+TGG | - | chr3.4:92541641-92541660 | MS.gene80195:intron | 35.0% |
| ! | TCTCTGAATGATTTTCGTCA+GGG | + | chr3.4:92543441-92543460 | None:intergenic | 35.0% |
| ! | TCTGATCTAATCTTTTCCCT+GGG | - | chr3.4:92541747-92541766 | MS.gene80195:intron | 35.0% |
| ! | TGGTTGGGGATAAACTTTTA+AGG | - | chr3.4:92541860-92541879 | MS.gene80195:intron | 35.0% |
| ! | TGTTTTTCTTAATGCTCTCC+AGG | + | chr3.4:92542776-92542795 | None:intergenic | 35.0% |
| ! | TTAGACTTGACTGAAGGTTT+TGG | + | chr3.4:92546745-92546764 | None:intergenic | 35.0% |
| ! | TTCTCTGAATGATTTTCGTC+AGG | + | chr3.4:92543442-92543461 | None:intergenic | 35.0% |
| ! | TTTTCTACTTGGATTTGTCG+TGG | - | chr3.4:92546014-92546033 | MS.gene80195:CDS | 35.0% |
| !! | ACAGTTTTCTTTTAACTCGG+GGG | - | chr3.4:92542482-92542501 | MS.gene80195:intron | 35.0% |
| !! | ATCTCAAGCTTTTGGGAAAT+TGG | - | chr3.4:92542420-92542439 | MS.gene80195:intron | 35.0% |
| !! | CAACATCAATCTTTGGTGTT+TGG | - | chr3.4:92541571-92541590 | MS.gene80195:CDS | 35.0% |
| !! | TCATCATCATAAGGAGTATC+GGG | + | chr3.4:92541952-92541971 | None:intergenic | 35.0% |
| !! | TCTCAAGCTTTTGGGAAATT+GGG | - | chr3.4:92542421-92542440 | MS.gene80195:intron | 35.0% |
| !! | TGACAATTATTTCTGTGGAC+AGG | - | chr3.4:92545547-92545566 | MS.gene80195:intron | 35.0% |
| !!! | AGTCTTTGGGGTTTTTTGTT+TGG | + | chr3.4:92546794-92546813 | None:intergenic | 35.0% |
| !!! | GGATAAACTTTTAAGGCATC+CGG | - | chr3.4:92541867-92541886 | MS.gene80195:intron | 35.0% |
| !!! | GGGTTTTGAAAGTGACAATT+TGG | + | chr3.4:92541389-92541408 | None:intergenic | 35.0% |
| !!! | GGTTGGGGTTTATTCTTTTT+TGG | + | chr3.4:92545248-92545267 | None:intergenic | 35.0% |
| !!! | GTTGTTTGTGCAGTTTTAGA+GGG | - | chr3.4:92546253-92546272 | MS.gene80195:CDS | 35.0% |
| !!! | TGAGAGATTTTGGCTAACAA+GGG | - | chr3.4:92544321-92544340 | MS.gene80195:intron | 35.0% |
| !!! | TGGACTTTTCACCACTTTTT+GGG | + | chr3.4:92546837-92546856 | None:intergenic | 35.0% |
| !!! | TTGAGAGATTTTGGCTAACA+AGG | - | chr3.4:92544320-92544339 | MS.gene80195:intron | 35.0% |
| AAAACTGCTGGTACAGATTC+AGG | - | chr3.4:92543613-92543632 | MS.gene80195:intron | 40.0% | |
| AAATCAGCGCATCACATTCA+AGG | + | chr3.4:92542222-92542241 | None:intergenic | 40.0% | |
| AAGAGCAGCTTATTCAAGCT+GGG | - | chr3.4:92541144-92541163 | MS.gene80195:CDS | 40.0% | |
| AAGTTTGGTCAGAAGTCTAC+GGG | - | chr3.4:92546538-92546557 | MS.gene80195:intron | 40.0% | |
| AATCAGGGATCATCATCCAA+AGG | - | chr3.4:92542668-92542687 | MS.gene80195:CDS | 40.0% | |
| AATCCTCGAAACTGTTGCAA+AGG | - | chr3.4:92542171-92542190 | MS.gene80195:intron | 40.0% | |
| AATTTGCCAAGAGGAAGCTA+AGG | - | chr3.4:92543054-92543073 | MS.gene80195:intron | 40.0% | |
| ACCAGCTCCATTTGAAAATC+AGG | - | chr3.4:92542652-92542671 | MS.gene80195:CDS | 40.0% | |
| ACCATAAAGAATAGAAGGGG+AGG | + | chr3.4:92544983-92545002 | None:intergenic | 40.0% | |
| ACCTGGAAACTCAAGTTCTT+AGG | - | chr3.4:92542553-92542572 | MS.gene80195:intron | 40.0% | |
| ACTTGGTTCAATTTGCCAAG+AGG | - | chr3.4:92543045-92543064 | MS.gene80195:intron | 40.0% | |
| AGGAAATGGTTTCTTCTCCA+AGG | - | chr3.4:92543894-92543913 | MS.gene80195:CDS | 40.0% | |
| AGTACTTACTGACGATCCTT+CGG | + | chr3.4:92544265-92544284 | None:intergenic | 40.0% | |
| ATTCAAGTCCAGCACTATCA+TGG | - | chr3.4:92542303-92542322 | MS.gene80195:intron | 40.0% | |
| CAAGACTGTTAGTGATTCTG+AGG | - | chr3.4:92546582-92546601 | MS.gene80195:intron | 40.0% | |
| CCAGCTCCATTTGAAAATCA+GGG | - | chr3.4:92542653-92542672 | MS.gene80195:CDS | 40.0% | |
| CCATAAAGAATAGAAGGGGA+GGG | + | chr3.4:92544982-92545001 | None:intergenic | 40.0% | |
| CCATGATAACATCGCCAAAA+AGG | + | chr3.4:92544523-92544542 | None:intergenic | 40.0% | |
| CGATGTTATCATGGTCTTCA+TGG | - | chr3.4:92544529-92544548 | MS.gene80195:CDS | 40.0% | |
| CTAATTGTCTTGCTGCTATC+AGG | - | chr3.4:92544180-92544199 | MS.gene80195:CDS | 40.0% | |
| CTATCAGGAGTCTGATATCA+TGG | - | chr3.4:92544195-92544214 | MS.gene80195:CDS | 40.0% | |
| CTCAGAATCACTAACAGTCT+TGG | + | chr3.4:92546584-92546603 | None:intergenic | 40.0% | |
| CTCGTTATCATCCAATTTCC+TGG | + | chr3.4:92543689-92543708 | None:intergenic | 40.0% | |
| CTGGTAGATAAGAAAAAGCG+GGG | - | chr3.4:92543736-92543755 | MS.gene80195:intron | 40.0% | |
| GAAGTTTGGTCAGAAGTCTA+CGG | - | chr3.4:92546537-92546556 | MS.gene80195:intron | 40.0% | |
| GAGAACATTGGGTATATCTC+TGG | - | chr3.4:92543006-92543025 | MS.gene80195:intron | 40.0% | |
| GAGTGGAGAAAGCAAATCAA+AGG | + | chr3.4:92542754-92542773 | None:intergenic | 40.0% | |
| GATGATTTGATATCGGACCT+TGG | + | chr3.4:92543914-92543933 | None:intergenic | 40.0% | |
| GCAAGAAAGGCAGATCATAT+TGG | + | chr3.4:92545813-92545832 | None:intergenic | 40.0% | |
| GCAGATTTCGTTGAATGACT+CGG | + | chr3.4:92543262-92543281 | None:intergenic | 40.0% | |
| GCTGGTAGATAAGAAAAAGC+GGG | - | chr3.4:92543735-92543754 | MS.gene80195:intron | 40.0% | |
| GGTAAATCCAAGAACATTGG+TGG | - | chr3.4:92546679-92546698 | MS.gene80195:intron | 40.0% | |
| GTGGGACAATTACTATCCAA+AGG | + | chr3.4:92545035-92545054 | None:intergenic | 40.0% | |
| GTGTAAGACTTGAAGTATGG+TGG | - | chr3.4:92544239-92544258 | MS.gene80195:intron | 40.0% | |
| GTTATTAATCATCGTGGTCC+AGG | - | chr3.4:92542898-92542917 | MS.gene80195:intron | 40.0% | |
| TAAAGTGCATGACAACAGAC+AGG | + | chr3.4:92542019-92542038 | None:intergenic | 40.0% | |
| TAAATCTTGCCAGGGAAAAG+TGG | - | chr3.4:92545441-92545460 | MS.gene80195:CDS | 40.0% | |
| TAACTGCATAAGCAACTTCC+TGG | + | chr3.4:92543354-92543373 | None:intergenic | 40.0% | |
| TCAGGCGTAAAAAAAACTGC+TGG | - | chr3.4:92543601-92543620 | MS.gene80195:intron | 40.0% | |
| TCCCAAAAGCTTGAGATGTT+TGG | + | chr3.4:92542417-92542436 | None:intergenic | 40.0% | |
| TCCTAAGAACTTGAGTTTCC+AGG | + | chr3.4:92542557-92542576 | None:intergenic | 40.0% | |
| TCGGTGTAAGACTTGAAGTA+TGG | - | chr3.4:92544236-92544255 | MS.gene80195:intron | 40.0% | |
| TGAGAGTTACTTAGCAAAGG+TGG | - | chr3.4:92541783-92541802 | MS.gene80195:intron | 40.0% | |
| TGGTAGATAAGAAAAAGCGG+GGG | - | chr3.4:92543737-92543756 | MS.gene80195:intron | 40.0% | |
| TGTGATTTCACTGATGCAAG+CGG | + | chr3.4:92541917-92541936 | None:intergenic | 40.0% | |
| TTACTTAGCAAAGGTGGAAC+AGG | - | chr3.4:92541789-92541808 | MS.gene80195:intron | 40.0% | |
| TTCAAGTCCAGCACTATCAT+GGG | - | chr3.4:92542304-92542323 | MS.gene80195:intron | 40.0% | |
| TTCTACTTGGATTTGTCGTG+GGG | - | chr3.4:92546016-92546035 | MS.gene80195:CDS | 40.0% | |
| TTCTCCTATTCTCGTACGAT+CGG | + | chr3.4:92542150-92542169 | None:intergenic | 40.0% | |
| TTGATGTGGAATTGTGGGAA+AGG | - | chr3.4:92544722-92544741 | MS.gene80195:CDS | 40.0% | |
| TTTCCTCTTTCCATTTGTCG+TGG | + | chr3.4:92543963-92543982 | None:intergenic | 40.0% | |
| ! | AAATTGGATGATAACGAGGG+TGG | - | chr3.4:92543691-92543710 | MS.gene80195:intron | 40.0% |
| ! | CACCAAACATCTCAAGCTTT+TGG | - | chr3.4:92542412-92542431 | MS.gene80195:intron | 40.0% |
| ! | CAGATCATGTGTGGTAATGT+TGG | - | chr3.4:92542195-92542214 | MS.gene80195:CDS | 40.0% |
| ! | CAGGAAATTGGATGATAACG+AGG | - | chr3.4:92543687-92543706 | MS.gene80195:intron | 40.0% |
| ! | CATGCTGTCTTGAGAGATTT+TGG | - | chr3.4:92544311-92544330 | MS.gene80195:intron | 40.0% |
| ! | GAGGAGTTCAATGATTTGGA+TGG | - | chr3.4:92543184-92543203 | MS.gene80195:intron | 40.0% |
| ! | TCAAAGGGTGTACTGAAGTT+TGG | - | chr3.4:92546523-92546542 | MS.gene80195:intron | 40.0% |
| ! | TCCAGGTAAAAGCATGTGAA+CGG | + | chr3.4:92542540-92542559 | None:intergenic | 40.0% |
| ! | TCCTTGCTTAGTTGGTTCAT+CGG | + | chr3.4:92545917-92545936 | None:intergenic | 40.0% |
| ! | TGCAGAGGCTGTTTCAAAAA+AGG | - | chr3.4:92543507-92543526 | MS.gene80195:intron | 40.0% |
| ! | TTAGTTGGTTCATCGGAACT+TGG | + | chr3.4:92545910-92545929 | None:intergenic | 40.0% |
| ! | TTTCCTCCTTCGATTTGTAG+TGG | - | chr3.4:92546478-92546497 | MS.gene80195:intron | 40.0% |
| !! | AATGATGTTCCACTTTTCCC+TGG | + | chr3.4:92545453-92545472 | None:intergenic | 40.0% |
| !! | AGGGAGTGTTATATACTGTG+TGG | - | chr3.4:92544347-92544366 | MS.gene80195:intron | 40.0% |
| !! | CCTTTTTGGCGATGTTATCA+TGG | - | chr3.4:92544520-92544539 | MS.gene80195:CDS | 40.0% |
| !! | CTTTTAACTCGGGGGATAAA+GGG | - | chr3.4:92542490-92542509 | MS.gene80195:intron | 40.0% |
| !! | GGTTGTTTGTGCAGTTTTAG+AGG | - | chr3.4:92546252-92546271 | MS.gene80195:CDS | 40.0% |
| !! | GTGGACTTTTCACCACTTTT+TGG | + | chr3.4:92546838-92546857 | None:intergenic | 40.0% |
| !! | TCTTTTAACTCGGGGGATAA+AGG | - | chr3.4:92542489-92542508 | MS.gene80195:intron | 40.0% |
| !! | TTTTGGGAAATTGGGAGAGT+TGG | - | chr3.4:92542429-92542448 | MS.gene80195:intron | 40.0% |
| !!! | ACACACATTTTTTCTTCCCG+AGG | + | chr3.4:92543990-92544009 | None:intergenic | 40.0% |
| !!! | GACTTTTCACCACTTTTTGG+GGG | + | chr3.4:92546835-92546854 | None:intergenic | 40.0% |
| !!! | GGACTTTTCACCACTTTTTG+GGG | + | chr3.4:92546836-92546855 | None:intergenic | 40.0% |
| !!! | GGTTTTGTTTTCTTCCTTGC+AGG | + | chr3.4:92545889-92545908 | None:intergenic | 40.0% |
| !!! | TGAATGTGATGCGCTGATTT+TGG | - | chr3.4:92542222-92542241 | MS.gene80195:CDS | 40.0% |
| AAAACCACTGCTTGCTTGAG+AGG | + | chr3.4:92545201-92545220 | None:intergenic | 45.0% | |
| AAACAAAGTGGGTCTGCTAG+TGG | - | chr3.4:92543640-92543659 | MS.gene80195:intron | 45.0% | |
| AAACCACTGCTTGCTTGAGA+GGG | + | chr3.4:92545200-92545219 | None:intergenic | 45.0% | |
| AAGGACAGCACTCCTATAAG+TGG | - | chr3.4:92546625-92546644 | MS.gene80195:intron | 45.0% | |
| ACAAACCTGGAAGAAAGACC+TGG | + | chr3.4:92545943-92545962 | None:intergenic | 45.0% | |
| ACATCAGGTGATGCCATGAA+GGG | - | chr3.4:92546973-92546992 | MS.gene80195:CDS | 45.0% | |
| ACCTTCAGTCAAGTCTAAGC+AGG | - | chr3.4:92546747-92546766 | MS.gene80195:intron | 45.0% | |
| AGAGGAAGCTAAGGAAGCTA+AGG | - | chr3.4:92543063-92543082 | MS.gene80195:intron | 45.0% | |
| AGATAACCCCTCAAATGTCG+AGG | - | chr3.4:92543483-92543502 | MS.gene80195:intron | 45.0% | |
| ATCCAAACTAAAGCCCTGCT+TGG | - | chr3.4:92542973-92542992 | MS.gene80195:intron | 45.0% | |
| CAAGTCAGTCACAAACGATG+GGG | - | chr3.4:92543141-92543160 | MS.gene80195:intron | 45.0% | |
| CAGGAAGAAGAAAGTGATCG+TGG | - | chr3.4:92545566-92545585 | MS.gene80195:intron | 45.0% | |
| CCAAGTCAGTCACAAACGAT+GGG | - | chr3.4:92543140-92543159 | MS.gene80195:intron | 45.0% | |
| CCCTCCCCTTCTATTCTTTA+TGG | - | chr3.4:92544979-92544998 | MS.gene80195:CDS | 45.0% | |
| CGATTGTGCAGCCTCTTTAA+TGG | + | chr3.4:92543089-92543108 | None:intergenic | 45.0% | |
| CTACCACGACAAATGGAAAG+AGG | - | chr3.4:92543957-92543976 | MS.gene80195:intron | 45.0% | |
| CTTCAAGTCTTACACCGACA+AGG | + | chr3.4:92544234-92544253 | None:intergenic | 45.0% | |
| CTTGGAACCACCAATGTTCT+TGG | + | chr3.4:92546689-92546708 | None:intergenic | 45.0% | |
| GAAGAGCAGCTTATTCAAGC+TGG | - | chr3.4:92541143-92541162 | MS.gene80195:CDS | 45.0% | |
| GATTCAGATGCAGATGAGGT+TGG | - | chr3.4:92545479-92545498 | MS.gene80195:intron | 45.0% | |
| GCAATTCGCATAGACGTTCT+AGG | + | chr3.4:92541817-92541836 | None:intergenic | 45.0% | |
| GGAAGCTAAGGCCATTAAAG+AGG | - | chr3.4:92543075-92543094 | MS.gene80195:intron | 45.0% | |
| GGCGTTTGATCAAAAGGAAC+TGG | - | chr3.4:92541121-92541140 | MS.gene80195:CDS | 45.0% | |
| GTGCAAGCAGTGAGAACATT+GGG | - | chr3.4:92542995-92543014 | MS.gene80195:intron | 45.0% | |
| TAAGCCGATCGTACGAGAAT+AGG | - | chr3.4:92542143-92542162 | MS.gene80195:intron | 45.0% | |
| TAGCTTCCTTAGCTTCCTCT+TGG | + | chr3.4:92543063-92543082 | None:intergenic | 45.0% | |
| TCCAAGTCAGTCACAAACGA+TGG | - | chr3.4:92543139-92543158 | MS.gene80195:intron | 45.0% | |
| TCCGATGAACCAACTAAGCA+AGG | - | chr3.4:92545913-92545932 | MS.gene80195:CDS | 45.0% | |
| TCCTGCTTAGACTTGACTGA+AGG | + | chr3.4:92546751-92546770 | None:intergenic | 45.0% | |
| TCTACTTGGATTTGTCGTGG+GGG | - | chr3.4:92546017-92546036 | MS.gene80195:CDS | 45.0% | |
| TCTGCAACCTCGACATTTGA+GGG | + | chr3.4:92543493-92543512 | None:intergenic | 45.0% | |
| TCTGCTACACAGACAATGAC+TGG | - | chr3.4:92546658-92546677 | MS.gene80195:intron | 45.0% | |
| TGACCTTTGCAACAGTTTCG+AGG | + | chr3.4:92542177-92542196 | None:intergenic | 45.0% | |
| TGCAAAGGTCAGATCATGTG+TGG | - | chr3.4:92542186-92542205 | MS.gene80195:CDS | 45.0% | |
| TGCAGTTTACAATACAGGCC+AGG | + | chr3.4:92544576-92544595 | None:intergenic | 45.0% | |
| TTCTTAATGCTCTCCAGGAG+TGG | + | chr3.4:92542771-92542790 | None:intergenic | 45.0% | |
| TTTCTTATCTACCAGCTGCC+TGG | + | chr3.4:92543731-92543750 | None:intergenic | 45.0% | |
| ! | AAAGCACTCAGCCAGGAAAT+TGG | - | chr3.4:92543675-92543694 | MS.gene80195:intron | 45.0% |
| ! | AGCTGATTCAGATGCAGATG+AGG | - | chr3.4:92545475-92545494 | MS.gene80195:intron | 45.0% |
| ! | ATCAGATGTTTCTGCAAGCG+AGG | - | chr3.4:92546927-92546946 | MS.gene80195:CDS | 45.0% |
| ! | ATCCAAACCCATGATAGTGC+TGG | + | chr3.4:92542314-92542333 | None:intergenic | 45.0% |
| ! | ATTTGTAGTGGTGGAGCATC+AGG | - | chr3.4:92546490-92546509 | MS.gene80195:intron | 45.0% |
| ! | CCCTGATTTTCAAATGGAGC+TGG | + | chr3.4:92542656-92542675 | None:intergenic | 45.0% |
| ! | CTGAATGATTTTCGTCAGGG+AGG | + | chr3.4:92543438-92543457 | None:intergenic | 45.0% |
| ! | TTTTCTCCTGCTCTTCTTGG+TGG | + | chr3.4:92543239-92543258 | None:intergenic | 45.0% |
| !! | AAAGAAGCGTCAGAGAAGCT+AGG | - | chr3.4:92546996-92547015 | MS.gene80195:CDS | 45.0% |
| !! | ATGCTAAAAAGCACTCAGCC+AGG | - | chr3.4:92543668-92543687 | MS.gene80195:intron | 45.0% |
| !! | GACTTCTAGAGTTTGCTTCC+TGG | - | chr3.4:92544555-92544574 | MS.gene80195:CDS | 45.0% |
| !! | TGATTTGCTTTCTCCACTCC+TGG | - | chr3.4:92542755-92542774 | MS.gene80195:intron | 45.0% |
| !! | TTATGGTGTAAGCTCTGGGA+TGG | - | chr3.4:92541646-92541665 | MS.gene80195:intron | 45.0% |
| !! | TTTTGGCTAACAAGGGTGCA+GGG | - | chr3.4:92544328-92544347 | MS.gene80195:intron | 45.0% |
| !!! | ACTTTTAAGGCATCCGGATC+CGG | - | chr3.4:92541873-92541892 | MS.gene80195:intron | 45.0% |
| !!! | ATTTTGGCTAACAAGGGTGC+AGG | - | chr3.4:92544327-92544346 | MS.gene80195:intron | 45.0% |
| !!! | TTTTAAAAACAAATTATTTA+TGG | - | chr3.4:92543848-92543867 | MS.gene80195:intron | 5.0% |
| AACCACTGCTTGCTTGAGAG+GGG | + | chr3.4:92545199-92545218 | None:intergenic | 50.0% | |
| AAGAAGCCACCAAGAAGAGC+AGG | - | chr3.4:92543230-92543249 | MS.gene80195:intron | 50.0% | |
| AAGCAGGAAACCCCAAAGAG+TGG | - | chr3.4:92546763-92546782 | MS.gene80195:intron | 50.0% | |
| ACTTGAAGTATGGTGGCCGA+AGG | - | chr3.4:92544246-92544265 | MS.gene80195:intron | 50.0% | |
| AGAAGCTCATCCACCGATGA+AGG | + | chr3.4:92541188-92541207 | None:intergenic | 50.0% | |
| AGACCATAAGGTGAGACCCT+AGG | - | chr3.4:92542266-92542285 | MS.gene80195:intron | 50.0% | |
| AGATAAGAAAAAGCGGGGGC+AGG | - | chr3.4:92543741-92543760 | MS.gene80195:intron | 50.0% | |
| ATTTGTCGTGGGGGAGCAAT+TGG | - | chr3.4:92546026-92546045 | MS.gene80195:intron | 50.0% | |
| CCAACTAAGCAAGGAATGCC+AGG | - | chr3.4:92545922-92545941 | MS.gene80195:CDS | 50.0% | |
| CCACCACTACAAATCGAAGG+AGG | + | chr3.4:92546484-92546503 | None:intergenic | 50.0% | |
| CCCATCGTTTGTGACTGACT+TGG | + | chr3.4:92543143-92543162 | None:intergenic | 50.0% | |
| CCTCAGAAGCAGCAGTCTTT+GGG | + | chr3.4:92546807-92546826 | None:intergenic | 50.0% | |
| CCTGGCATTCCTTGCTTAGT+TGG | + | chr3.4:92545925-92545944 | None:intergenic | 50.0% | |
| CTCAAATGTCGAGGTTGCAG+AGG | - | chr3.4:92543492-92543511 | MS.gene80195:intron | 50.0% | |
| CTCAGAAGCAGCAGTCTTTG+GGG | + | chr3.4:92546806-92546825 | None:intergenic | 50.0% | |
| CTCTGCAACCTCGACATTTG+AGG | + | chr3.4:92543494-92543513 | None:intergenic | 50.0% | |
| CTGACGCTTCTTTCCCTTCA+TGG | + | chr3.4:92546989-92547008 | None:intergenic | 50.0% | |
| CTGCAACCTCGACATTTGAG+GGG | + | chr3.4:92543492-92543511 | None:intergenic | 50.0% | |
| GAAAAGTCCACTGTCGACAG+TGG | - | chr3.4:92546847-92546866 | MS.gene80195:intron | 50.0% | |
| GAATGCCAGGTCTTTCTTCC+AGG | - | chr3.4:92545935-92545954 | MS.gene80195:CDS | 50.0% | |
| GACATCAGGTGATGCCATGA+AGG | - | chr3.4:92546972-92546991 | MS.gene80195:CDS | 50.0% | |
| GAGGAGACTACCACGACAAA+TGG | - | chr3.4:92543950-92543969 | MS.gene80195:intron | 50.0% | |
| GCAAGTGCAGCTTTCACATC+CGG | + | chr3.4:92541895-92541914 | None:intergenic | 50.0% | |
| GCTCCACCACTACAAATCGA+AGG | + | chr3.4:92546487-92546506 | None:intergenic | 50.0% | |
| GCTTGCAGATCCTCCTTCAT+CGG | - | chr3.4:92541172-92541191 | MS.gene80195:CDS | 50.0% | |
| GGTGCAAGCAGTGAGAACAT+TGG | - | chr3.4:92542994-92543013 | MS.gene80195:intron | 50.0% | |
| GTCCAGCACTATCATGGGTT+TGG | - | chr3.4:92542309-92542328 | MS.gene80195:intron | 50.0% | |
| GTGCATGCTTCAAGCCCAAA+TGG | - | chr3.4:92541604-92541623 | MS.gene80195:CDS | 50.0% | |
| TCTCCCAATTTCCGGGCAAT+CGG | + | chr3.4:92542932-92542951 | None:intergenic | 50.0% | |
| TCTTCCTTGCAGGCCTGAAT+AGG | + | chr3.4:92545879-92545898 | None:intergenic | 50.0% | |
| TGACCAAGCACCTTTCTCAC+TGG | + | chr3.4:92543577-92543596 | None:intergenic | 50.0% | |
| TGATCCTATTCAGGCCTGCA+AGG | - | chr3.4:92545872-92545891 | MS.gene80195:CDS | 50.0% | |
| TGGAAAGAGGAAACACGCCT+CGG | - | chr3.4:92543970-92543989 | MS.gene80195:intron | 50.0% | |
| TGTCAAGCAGCCAGTGAGAA+AGG | - | chr3.4:92543564-92543583 | MS.gene80195:intron | 50.0% | |
| TTCCCGATTGCCCGGAAATT+GGG | - | chr3.4:92542926-92542945 | MS.gene80195:intron | 50.0% | |
| TTTCCCGATTGCCCGGAAAT+TGG | - | chr3.4:92542925-92542944 | MS.gene80195:intron | 50.0% | |
| TTTGGTCAGAAGTCTACGGG+TGG | - | chr3.4:92546541-92546560 | MS.gene80195:intron | 50.0% | |
| TTTGTCGTGGGGGAGCAATT+GGG | - | chr3.4:92546027-92546046 | MS.gene80195:intron | 50.0% | |
| ! | AAGGTGCTTGGTCAGAACTC+AGG | - | chr3.4:92543583-92543602 | MS.gene80195:intron | 50.0% |
| ! | AGATGTTTCTGCAAGCGAGG+AGG | - | chr3.4:92546930-92546949 | MS.gene80195:CDS | 50.0% |
| ! | AGGAAGTTTTCCCGATTGCC+CGG | - | chr3.4:92542918-92542937 | MS.gene80195:intron | 50.0% |
| ! | CACCAAGCAGGGCTTTAGTT+TGG | + | chr3.4:92542978-92542997 | None:intergenic | 50.0% |
| ! | CCAAAGACTGCTGCTTCTGA+GGG | - | chr3.4:92546805-92546824 | MS.gene80195:intron | 50.0% |
| ! | CCTCCTTCGATTTGTAGTGG+TGG | - | chr3.4:92546481-92546500 | MS.gene80195:intron | 50.0% |
| ! | CGGTTTTCTCCTGCTCTTCT+TGG | + | chr3.4:92543242-92543261 | None:intergenic | 50.0% |
| ! | CTCTTCTTGGTGGCTTCTTC+TGG | + | chr3.4:92543229-92543248 | None:intergenic | 50.0% |
| ! | GCCGTTCACATGCTTTTACC+TGG | - | chr3.4:92542536-92542555 | MS.gene80195:CDS | 50.0% |
| ! | TTGGATGATAACGAGGGTGG+TGG | - | chr3.4:92543694-92543713 | MS.gene80195:intron | 50.0% |
| ! | TTTCTCACTGGCTGCTTGAC+AGG | + | chr3.4:92543565-92543584 | None:intergenic | 50.0% |
| AACTTCCTGGTCCTCGTGTG+AGG | + | chr3.4:92543341-92543360 | None:intergenic | 55.0% | |
| AAGTCCACTGTCGACAGTGG+TGG | - | chr3.4:92546850-92546869 | MS.gene80195:intron | 55.0% | |
| ACCACTGCTTGCTTGAGAGG+GGG | + | chr3.4:92545198-92545217 | None:intergenic | 55.0% | |
| ACTGTCGACAGTGGTGGCAA+GGG | - | chr3.4:92546856-92546875 | MS.gene80195:intron | 55.0% | |
| AGCTCATCCACCGATGAAGG+AGG | + | chr3.4:92541185-92541204 | None:intergenic | 55.0% | |
| AGTTCCGAGTTCCTCACACG+AGG | - | chr3.4:92543327-92543346 | MS.gene80195:intron | 55.0% | |
| ATCTACCAGCTGCCTGGAAG+AGG | + | chr3.4:92543725-92543744 | None:intergenic | 55.0% | |
| CCCTCAGAAGCAGCAGTCTT+TGG | + | chr3.4:92546808-92546827 | None:intergenic | 55.0% | |
| CTCACTGCTTGCACCAAGCA+GGG | + | chr3.4:92542989-92543008 | None:intergenic | 55.0% | |
| CTCCCAATTTCCGGGCAATC+GGG | + | chr3.4:92542931-92542950 | None:intergenic | 55.0% | |
| GACCCTCTCTCCCAATTTCC+GGG | + | chr3.4:92542939-92542958 | None:intergenic | 55.0% | |
| GAGGGAAAGCCCCCAAAAAG+TGG | - | chr3.4:92546823-92546842 | MS.gene80195:intron | 55.0% | |
| GCAGCTTTCACATCCGGATC+CGG | + | chr3.4:92541889-92541908 | None:intergenic | 55.0% | |
| GCTCCTAGGGTCTCACCTTA+TGG | + | chr3.4:92542272-92542291 | None:intergenic | 55.0% | |
| GGAAAGAGGAAACACGCCTC+GGG | - | chr3.4:92543971-92543990 | MS.gene80195:intron | 55.0% | |
| GGACCCTCTCTCCCAATTTC+CGG | + | chr3.4:92542940-92542959 | None:intergenic | 55.0% | |
| GGGCAATCGGGAAAACTTCC+TGG | + | chr3.4:92542919-92542938 | None:intergenic | 55.0% | |
| GGGGAACAACAATAGAGCCC+AGG | + | chr3.4:92545179-92545198 | None:intergenic | 55.0% | |
| GTTTGGATCCGCAGCTTTCG+AGG | + | chr3.4:92542961-92542980 | None:intergenic | 55.0% | |
| TAAGAAAAAGCGGGGGCAGG+AGG | - | chr3.4:92543744-92543763 | MS.gene80195:intron | 55.0% | |
| TCTCACTGCTTGCACCAAGC+AGG | + | chr3.4:92542990-92543009 | None:intergenic | 55.0% | |
| TGCACGCGTTGGAGAAGATG+AGG | - | chr3.4:92543165-92543184 | MS.gene80195:intron | 55.0% | |
| TGCAGATCCTCCTTCATCGG+TGG | - | chr3.4:92541175-92541194 | MS.gene80195:CDS | 55.0% | |
| TGCCCGGAAATTGGGAGAGA+GGG | - | chr3.4:92542934-92542953 | MS.gene80195:intron | 55.0% | |
| TGGTCCTCGTGTGAGGAACT+CGG | + | chr3.4:92543334-92543353 | None:intergenic | 55.0% | |
| TTGCCCGGAAATTGGGAGAG+AGG | - | chr3.4:92542933-92542952 | MS.gene80195:intron | 55.0% | |
| ! | AGAATAGAAGGGGAGGGTGC+AGG | + | chr3.4:92544976-92544995 | None:intergenic | 55.0% |
| ! | CACTGGCTGCTTGACAGGTT+TGG | + | chr3.4:92543560-92543579 | None:intergenic | 55.0% |
| ! | CCCAAAGACTGCTGCTTCTG+AGG | - | chr3.4:92546804-92546823 | MS.gene80195:intron | 55.0% |
| ! | GATGATAACGAGGGTGGTGG+TGG | - | chr3.4:92543697-92543716 | MS.gene80195:intron | 55.0% |
| !! | CAGCCAGTGAGAAAGGTGCT+TGG | - | chr3.4:92543571-92543590 | MS.gene80195:intron | 55.0% |
| AACGATGGGGTTGCACGCGT+TGG | - | chr3.4:92543154-92543173 | MS.gene80195:intron | 60.0% | |
| CACTGTCGACAGTGGTGGCA+AGG | - | chr3.4:92546855-92546874 | MS.gene80195:intron | 60.0% | |
| CTGTCGACAGTGGTGGCAAG+GGG | - | chr3.4:92546857-92546876 | MS.gene80195:intron | 60.0% | |
| CTTGCCACCACTGTCGACAG+TGG | + | chr3.4:92546857-92546876 | None:intergenic | 60.0% | |
| GAGAGGGTCCTCGAAAGCTG+CGG | - | chr3.4:92542950-92542969 | MS.gene80195:intron | 60.0% | |
| GAGTTCCTCACACGAGGACC+AGG | - | chr3.4:92543333-92543352 | MS.gene80195:intron | 60.0% | |
| GGGAGGCTGTCACTAGGTGA+AGG | + | chr3.4:92543421-92543440 | None:intergenic | 60.0% | |
| TCAAGTCGCTGCAGTGCCCA+GGG | + | chr3.4:92541766-92541785 | None:intergenic | 60.0% | |
| TCCCCCTCTCAAGCAAGCAG+TGG | - | chr3.4:92545194-92545213 | MS.gene80195:CDS | 60.0% | |
| TCGTCAGGGAGGCTGTCACT+AGG | + | chr3.4:92543427-92543446 | None:intergenic | 60.0% | |
| TGGATCCTCTTCCAGGCAGC+TGG | - | chr3.4:92543717-92543736 | MS.gene80195:intron | 60.0% | |
| !! | GTGGTGGTGGATCCTCTTCC+AGG | - | chr3.4:92543710-92543729 | MS.gene80195:intron | 60.0% |
| CTCAAGTCGCTGCAGTGCCC+AGG | + | chr3.4:92541767-92541786 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92541119 | 92547017 | 92541119 | ID=MS.gene80195 |
| chr3.4 | mRNA | 92541119 | 92547017 | 92541119 | ID=MS.gene80195.t1;Parent=MS.gene80195 |
| chr3.4 | exon | 92546916 | 92547017 | 92546916 | ID=MS.gene80195.t1.exon1;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92546916 | 92547017 | 92546916 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92546155 | 92546358 | 92546155 | ID=MS.gene80195.t1.exon2;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92546155 | 92546358 | 92546155 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92545861 | 92546042 | 92545861 | ID=MS.gene80195.t1.exon3;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92545861 | 92546042 | 92545861 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92545336 | 92545462 | 92545336 | ID=MS.gene80195.t1.exon4;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92545336 | 92545462 | 92545336 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92544371 | 92545216 | 92544371 | ID=MS.gene80195.t1.exon5;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92544371 | 92545216 | 92544371 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92544133 | 92544240 | 92544133 | ID=MS.gene80195.t1.exon6;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92544133 | 92544240 | 92544133 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92543861 | 92543934 | 92543861 | ID=MS.gene80195.t1.exon7;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92543861 | 92543934 | 92543861 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92543190 | 92543241 | 92543190 | ID=MS.gene80195.t1.exon8;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92543190 | 92543241 | 92543190 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92542640 | 92542726 | 92542640 | ID=MS.gene80195.t1.exon9;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92542640 | 92542726 | 92542640 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92542524 | 92542567 | 92542524 | ID=MS.gene80195.t1.exon10;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92542524 | 92542567 | 92542524 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92542180 | 92542251 | 92542180 | ID=MS.gene80195.t1.exon11;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92542180 | 92542251 | 92542180 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| chr3.4 | exon | 92541119 | 92541638 | 92541119 | ID=MS.gene80195.t1.exon12;Parent=MS.gene80195.t1 |
| chr3.4 | CDS | 92541119 | 92541638 | 92541119 | ID=cds.MS.gene80195.t1;Parent=MS.gene80195.t1 |
| Gene Sequence |
| Protein sequence |
