Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80238.t1 | XP_003603366.2 | 99.5 | 191 | 1 | 0 | 1 | 191 | 1 | 191 | 3.60E-104 | 387.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80238.t1 | Q9LFP0 | 77.2 | 189 | 43 | 0 | 1 | 189 | 1 | 189 | 2.0e-79 | 296.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80238.t1 | G7JAH8 | 99.5 | 191 | 1 | 0 | 1 | 191 | 1 | 191 | 2.6e-104 | 387.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045117 | MS.gene80238 | PPI |
| MS.gene79217 | MS.gene80238 | PPI |
| MS.gene052207 | MS.gene80238 | PPI |
| MS.gene75475 | MS.gene80238 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80238.t1 | MTR_3g106780 | 99.476 | 191 | 1 | 0 | 1 | 191 | 1 | 191 | 3.76e-139 | 386 |
| MS.gene80238.t1 | MTR_3g106780 | 97.126 | 174 | 5 | 0 | 1 | 174 | 1 | 174 | 5.81e-122 | 342 |
| MS.gene80238.t1 | MTR_3g106780 | 99.324 | 148 | 1 | 0 | 1 | 148 | 1 | 148 | 8.47e-106 | 301 |
| MS.gene80238.t1 | MTR_3g103010 | 75.723 | 173 | 42 | 0 | 11 | 183 | 8 | 180 | 6.30e-94 | 271 |
| MS.gene80238.t1 | MTR_5g012210 | 74.566 | 173 | 44 | 0 | 11 | 183 | 10 | 182 | 4.22e-90 | 262 |
| MS.gene80238.t1 | MTR_4g101460 | 71.523 | 151 | 43 | 0 | 33 | 183 | 1 | 151 | 2.69e-74 | 221 |
| MS.gene80238.t1 | MTR_3g106780 | 79.231 | 130 | 27 | 0 | 1 | 130 | 1 | 130 | 5.95e-69 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80238.t1 | AT5G11160 | 77.249 | 189 | 43 | 0 | 1 | 189 | 1 | 189 | 1.26e-103 | 296 |
| MS.gene80238.t1 | AT1G80050 | 75.132 | 189 | 47 | 0 | 1 | 189 | 1 | 189 | 7.86e-101 | 289 |
| MS.gene80238.t1 | AT4G12440 | 72.376 | 181 | 49 | 1 | 5 | 185 | 3 | 182 | 5.75e-92 | 266 |
| MS.gene80238.t1 | AT4G12440 | 72.376 | 181 | 49 | 1 | 5 | 185 | 3 | 182 | 5.75e-92 | 266 |
| MS.gene80238.t1 | AT4G22570 | 71.111 | 180 | 52 | 0 | 6 | 185 | 4 | 183 | 2.38e-89 | 259 |
| MS.gene80238.t1 | AT1G27450 | 69.942 | 173 | 52 | 0 | 11 | 183 | 8 | 180 | 1.53e-87 | 255 |
| MS.gene80238.t1 | AT1G27450 | 69.942 | 173 | 52 | 0 | 11 | 183 | 8 | 180 | 1.53e-87 | 255 |
| MS.gene80238.t1 | AT1G27450 | 69.942 | 173 | 52 | 0 | 11 | 183 | 68 | 240 | 8.54e-87 | 255 |
| MS.gene80238.t1 | AT5G11160 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 6.29e-81 | 238 |
| MS.gene80238.t1 | AT1G80050 | 75.159 | 157 | 39 | 0 | 33 | 189 | 1 | 157 | 9.29e-81 | 237 |
| MS.gene80238.t1 | AT1G27450 | 61.111 | 198 | 52 | 1 | 11 | 183 | 84 | 281 | 1.21e-80 | 241 |
| MS.gene80238.t1 | AT4G12440 | 77.083 | 96 | 21 | 1 | 4 | 99 | 2 | 96 | 5.71e-48 | 152 |
| MS.gene80238.t1 | AT4G12440 | 77.083 | 96 | 21 | 1 | 4 | 99 | 2 | 96 | 5.71e-48 | 152 |
| MS.gene80238.t1 | AT4G22570 | 72.632 | 95 | 26 | 0 | 6 | 100 | 4 | 98 | 1.76e-44 | 143 |
Find 41 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGACGGTGTAAACTTCT+TGG | 0.284373 | 3.4:-93033943 | MS.gene80238:CDS |
| TGGGAGATGTGTTGCAATCT+AGG | 0.320267 | 3.4:+93037039 | None:intergenic |
| CGCTGTCCAACCTGGTGAAC+GGG | 0.371582 | 3.4:-93034915 | MS.gene80238:CDS |
| GCCGAAGAAAATGGTCTTAA+GGG | 0.373266 | 3.4:-93037066 | MS.gene80238:CDS |
| TGCCGAAGAAAATGGTCTTA+AGG | 0.403352 | 3.4:-93037067 | MS.gene80238:CDS |
| TCTGCAGTTGCGTTGGGAAT+TGG | 0.405636 | 3.4:-93036449 | MS.gene80238:CDS |
| GAAGCAAGAGGGTTTGTGTT+TGG | 0.411897 | 3.4:-93036473 | MS.gene80238:CDS |
| GATTGGTGTGCCTGAGGTTA+AGG | 0.414050 | 3.4:-93034667 | MS.gene80238:intron |
| AGAATGTTTGCCGAAGAAAA+TGG | 0.424560 | 3.4:-93037075 | MS.gene80238:CDS |
| GTGGAATGTGCTTGTGTGAT+TGG | 0.438632 | 3.4:-93034684 | MS.gene80238:CDS |
| ATCGACGACTTGGTTGCAAC+AGG | 0.448378 | 3.4:-93034884 | MS.gene80238:CDS |
| TTTGGTTCTGCAGTTGCGTT+GGG | 0.461360 | 3.4:-93036455 | MS.gene80238:CDS |
| AGCTTGCGAGGTTTGCGTAA+AGG | 0.464262 | 3.4:+93036413 | None:intergenic |
| GAGGGACGACTCTGATGGAC+TGG | 0.472031 | 3.4:+93037019 | None:intergenic |
| GCGCTGTCCAACCTGGTGAA+CGG | 0.478342 | 3.4:-93034916 | MS.gene80238:CDS |
| ACGCAAACCTCGCAAGCTAC+CGG | 0.479212 | 3.4:-93036408 | MS.gene80238:CDS |
| GTTTGGTTCTGCAGTTGCGT+TGG | 0.491474 | 3.4:-93036456 | MS.gene80238:CDS |
| TGCAACAGGTGGAACTTTGT+CGG | 0.495035 | 3.4:-93034870 | MS.gene80238:CDS |
| ATGCACATTTCAGTTGTTGC+TGG | 0.495656 | 3.4:-93036660 | MS.gene80238:intron |
| ACAGGTGGAACTTTGTCGGC+AGG | 0.532728 | 3.4:-93034866 | MS.gene80238:CDS |
| GGGAGATGTGTTGCAATCTA+GGG | 0.544429 | 3.4:+93037040 | None:intergenic |
| GGCTATAGTTATCGACGACT+TGG | 0.544698 | 3.4:-93034894 | MS.gene80238:CDS |
| CATGTCGGCGCTGTCCAACC+TGG | 0.547674 | 3.4:-93034923 | MS.gene80238:CDS |
| CGCAAACCTCGCAAGCTACC+GGG | 0.550896 | 3.4:-93036407 | MS.gene80238:intron |
| GGCTCCACAAGCACATAAAG+TGG | 0.560359 | 3.4:+93033916 | None:intergenic |
| CTGAGCCATACCTTAACCTC+AGG | 0.561630 | 3.4:+93034657 | None:intergenic |
| ATAACTATAGCCCGTTCACC+AGG | 0.563626 | 3.4:+93034905 | None:intergenic |
| ACGTGCTAAGGCTGAAGTAG+TGG | 0.569286 | 3.4:-93034703 | MS.gene80238:CDS |
| AAAGCCACTTTATGTGCTTG+TGG | 0.574929 | 3.4:-93033920 | MS.gene80238:CDS |
| GTTGTACCCGGTAGCTTGCG+AGG | 0.575231 | 3.4:+93036401 | None:intergenic |
| GACGACTTGGTTGCAACAGG+TGG | 0.588976 | 3.4:-93034881 | MS.gene80238:CDS |
| CAATTATGTAGAACGTGCTA+AGG | 0.591327 | 3.4:-93034715 | MS.gene80238:intron |
| GAAGTGAGGGACGACTCTGA+TGG | 0.595744 | 3.4:+93037014 | None:intergenic |
| CTATAGCCCGTTCACCAGGT+TGG | 0.604880 | 3.4:+93034909 | None:intergenic |
| TTGTGTGATTGGTGTGCCTG+AGG | 0.609251 | 3.4:-93034673 | MS.gene80238:CDS |
| ATGCAGGAATTGAAGCAAGA+GGG | 0.621946 | 3.4:-93036484 | MS.gene80238:intron |
| GACATTGTTGTTAGATCACA+AGG | 0.630489 | 3.4:-93036727 | MS.gene80238:CDS |
| TATGCAGGAATTGAAGCAAG+AGG | 0.643982 | 3.4:-93036485 | MS.gene80238:intron |
| AGGGACGACTCTGATGGACT+GGG | 0.649098 | 3.4:+93037020 | None:intergenic |
| GATTGTTTAGAAATGCATGT+CGG | 0.652967 | 3.4:-93034938 | MS.gene80238:CDS |
| AAGCATTCATCTACTTGACG+TGG | 0.677392 | 3.4:+93033895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAATAAA+TGG | + | chr3.4:93035030-93035049 | None:intergenic | 0.0% |
| !! | AAAAAACTAAGTAATAAAAT+GGG | - | chr3.4:93034125-93034144 | MS.gene80238:intron | 10.0% |
| !! | TTATTTATATTTATTTAGGA+GGG | - | chr3.4:93034830-93034849 | MS.gene80238:intron | 10.0% |
| !! | TTTATTTATATTTATTTAGG+AGG | - | chr3.4:93034829-93034848 | MS.gene80238:intron | 10.0% |
| !!! | AAAGAGAAATTTTTTATTTT+TGG | - | chr3.4:93034402-93034421 | MS.gene80238:intron | 10.0% |
| !!! | AAGAGAAATTTTTTATTTTT+GGG | - | chr3.4:93034403-93034422 | MS.gene80238:intron | 10.0% |
| !!! | AATAAACTCAAATAAAATTT+TGG | + | chr3.4:93034892-93034911 | None:intergenic | 10.0% |
| !!! | ATTTGTATTTATTCATTTTT+TGG | + | chr3.4:93036423-93036442 | None:intergenic | 10.0% |
| !!! | TATTTGTATTTATTCATTTT+TGG | + | chr3.4:93036424-93036443 | None:intergenic | 10.0% |
| !! | AATAAAAATGTTGATGTATT+TGG | + | chr3.4:93034801-93034820 | None:intergenic | 15.0% |
| !! | ACAGAAATTAAATAAAAAAG+GGG | + | chr3.4:93034432-93034451 | None:intergenic | 15.0% |
| !! | ATTAAATAAGAAAAAAAGGA+AGG | + | chr3.4:93034006-93034025 | None:intergenic | 15.0% |
| !! | CAAAAAACTAAGTAATAAAA+TGG | - | chr3.4:93034124-93034143 | MS.gene80238:intron | 15.0% |
| !! | CACAGAAATTAAATAAAAAA+GGG | + | chr3.4:93034433-93034452 | None:intergenic | 15.0% |
| !! | TATTTATATTTATTTAGGAG+GGG | - | chr3.4:93034831-93034850 | MS.gene80238:intron | 15.0% |
| !! | TCACAGAAATTAAATAAAAA+AGG | + | chr3.4:93034434-93034453 | None:intergenic | 15.0% |
| !! | TTCAAATAAGATTAATAACA+AGG | + | chr3.4:93036961-93036980 | None:intergenic | 15.0% |
| !!! | TTAAATTTCTATCTTGTTAT+AGG | - | chr3.4:93036560-93036579 | MS.gene80238:intron | 15.0% |
| !! | AAGTTGTATGTTATATGATA+GGG | - | chr3.4:93035663-93035682 | MS.gene80238:intron | 20.0% |
| !! | AATAAACACTTTCGATATAA+AGG | - | chr3.4:93035052-93035071 | MS.gene80238:intron | 20.0% |
| !! | AATATATATACTATTCGGTA+CGG | - | chr3.4:93035413-93035432 | MS.gene80238:intron | 20.0% |
| !! | AATGAAACATATCAAAGTTT+AGG | + | chr3.4:93035959-93035978 | None:intergenic | 20.0% |
| !! | ACATATACTATTTAACTCAA+AGG | + | chr3.4:93035776-93035795 | None:intergenic | 20.0% |
| !! | GAGTTTATTCAAAGAATATT+AGG | - | chr3.4:93034903-93034922 | MS.gene80238:CDS | 20.0% |
| !! | GCTAAATATAAGAAAAAGTT+GGG | - | chr3.4:93034737-93034756 | MS.gene80238:intron | 20.0% |
| !! | TAAATAGTATATGTTTGGTT+TGG | - | chr3.4:93035782-93035801 | MS.gene80238:intron | 20.0% |
| !! | TAAGTTGTATGTTATATGAT+AGG | - | chr3.4:93035662-93035681 | MS.gene80238:intron | 20.0% |
| !! | TGAGTTAAATAGTATATGTT+TGG | - | chr3.4:93035777-93035796 | MS.gene80238:intron | 20.0% |
| !! | TGATTTAATGTAATTAGGTT+TGG | - | chr3.4:93034451-93034470 | MS.gene80238:intron | 20.0% |
| !! | TGCTAAATATAAGAAAAAGT+TGG | - | chr3.4:93034736-93034755 | MS.gene80238:intron | 20.0% |
| !! | TTATAATTGTTCATTGAATC+TGG | - | chr3.4:93036189-93036208 | MS.gene80238:intron | 20.0% |
| !! | TTCTGTGATTTAATGTAATT+AGG | - | chr3.4:93034446-93034465 | MS.gene80238:intron | 20.0% |
| !! | TTGCCAATATATATACTATT+CGG | - | chr3.4:93035408-93035427 | MS.gene80238:intron | 20.0% |
| !!! | AAAGAAAGCATAAAGTATAT+TGG | + | chr3.4:93036224-93036243 | None:intergenic | 20.0% |
| !!! | AAGAAAAGAAAACCATTTTT+AGG | + | chr3.4:93033975-93033994 | None:intergenic | 20.0% |
| !!! | AAGAAAGCATAAAGTATATT+GGG | + | chr3.4:93036223-93036242 | None:intergenic | 20.0% |
| !!! | AATATCATTCTAGAAGTTTA+AGG | + | chr3.4:93036932-93036951 | None:intergenic | 20.0% |
| !!! | AATCTTATTTGAAATCATGA+TGG | - | chr3.4:93036968-93036987 | MS.gene80238:intron | 20.0% |
| !!! | ACTTTTTCTTATATTTAGCA+CGG | + | chr3.4:93034736-93034755 | None:intergenic | 20.0% |
| !!! | AGAAAAGAAAACCATTTTTA+GGG | + | chr3.4:93033974-93033993 | None:intergenic | 20.0% |
| !!! | CAATATTTTCAAATTGATCA+TGG | - | chr3.4:93035436-93035455 | MS.gene80238:intron | 20.0% |
| !!! | GAAAAATATTCTCTAGAATA+CGG | - | chr3.4:93035998-93036017 | MS.gene80238:intron | 20.0% |
| !!! | TGAAATTTCTATCTTGTTAT+AGG | - | chr3.4:93036372-93036391 | MS.gene80238:intron | 20.0% |
| ! | AAATCATCGTCAATAATCAT+TGG | + | chr3.4:93035832-93035851 | None:intergenic | 25.0% |
| ! | GATGTATGAATATTCAATGT+GGG | - | chr3.4:93035266-93035285 | MS.gene80238:intron | 25.0% |
| ! | GTACCGAATAGTATATATAT+TGG | + | chr3.4:93035414-93035433 | None:intergenic | 25.0% |
| ! | TAACAAGATAGAAATTTCAG+AGG | + | chr3.4:93036371-93036390 | None:intergenic | 25.0% |
| ! | TATGTACAACAAATTTGAAG+TGG | + | chr3.4:93036684-93036703 | None:intergenic | 25.0% |
| ! | TCTGTTTAACCAAACTAATT+GGG | - | chr3.4:93035627-93035646 | MS.gene80238:intron | 25.0% |
| ! | TGATGTATGAATATTCAATG+TGG | - | chr3.4:93035265-93035284 | MS.gene80238:intron | 25.0% |
| ! | TGATTCATACAATTTCAATC+AGG | + | chr3.4:93035567-93035586 | None:intergenic | 25.0% |
| ! | TTAAAAATGTTAAGGAGAGT+TGG | + | chr3.4:93036893-93036912 | None:intergenic | 25.0% |
| ! | TTCTGTTTAACCAAACTAAT+TGG | - | chr3.4:93035626-93035645 | MS.gene80238:intron | 25.0% |
| !! | AAACAAATTTGAAGTCCAAT+AGG | + | chr3.4:93036494-93036513 | None:intergenic | 25.0% |
| !! | ACTAAACTTTTATGTGGAAT+GGG | - | chr3.4:93034669-93034688 | MS.gene80238:CDS | 25.0% |
| !! | AGAAAGCATAAAGTATATTG+GGG | + | chr3.4:93036222-93036241 | None:intergenic | 25.0% |
| !! | AGTAGTACTAAACTTTTATG+TGG | - | chr3.4:93034663-93034682 | MS.gene80238:intron | 25.0% |
| !! | ATGTTATATGATAGGGATTT+TGG | - | chr3.4:93035670-93035689 | MS.gene80238:intron | 25.0% |
| !! | CTTTGATATGTTTCATTTTC+AGG | - | chr3.4:93035962-93035981 | MS.gene80238:intron | 25.0% |
| !! | CTTTTTCTTATATTTAGCAC+GGG | + | chr3.4:93034735-93034754 | None:intergenic | 25.0% |
| !! | TACTAAACTTTTATGTGGAA+TGG | - | chr3.4:93034668-93034687 | MS.gene80238:CDS | 25.0% |
| !! | TTAATGTAATTAGGTTTGGT+TGG | - | chr3.4:93034455-93034474 | MS.gene80238:intron | 25.0% |
| AAACTAATTGGGGCTTAATT+TGG | - | chr3.4:93035638-93035657 | MS.gene80238:intron | 30.0% | |
| AAATTAAGCCCCAATTAGTT+TGG | + | chr3.4:93035639-93035658 | None:intergenic | 30.0% | |
| AACAAAAAAAGTAGTGCATG+AGG | + | chr3.4:93034349-93034368 | None:intergenic | 30.0% | |
| ACAAAAAAAGTAGTGCATGA+GGG | + | chr3.4:93034348-93034367 | None:intergenic | 30.0% | |
| ACTAAGTAATAAAATGGGTC+TGG | - | chr3.4:93034130-93034149 | MS.gene80238:intron | 30.0% | |
| ACTTTCCTCTTAGATATTGT+GGG | + | chr3.4:93035185-93035204 | None:intergenic | 30.0% | |
| AGAAAAAAAGGAAGGAAAGA+AGG | + | chr3.4:93033998-93034017 | None:intergenic | 30.0% | |
| AGGTACTCTTAAAAGCTTAA+AGG | - | chr3.4:93036392-93036411 | MS.gene80238:intron | 30.0% | |
| ATAAGTCAAAAAATGACGCA+GGG | + | chr3.4:93036173-93036192 | None:intergenic | 30.0% | |
| ATAGATACGTTCTACAATTC+AGG | + | chr3.4:93035864-93035883 | None:intergenic | 30.0% | |
| CTAAGTAATAAAATGGGTCT+GGG | - | chr3.4:93034131-93034150 | MS.gene80238:intron | 30.0% | |
| CTGTTTAACCAAACTAATTG+GGG | - | chr3.4:93035628-93035647 | MS.gene80238:intron | 30.0% | |
| GATTGTTTAGAAATGCATGT+CGG | - | chr3.4:93036025-93036044 | MS.gene80238:intron | 30.0% | |
| TAGATACGTTCTACAATTCA+GGG | + | chr3.4:93035863-93035882 | None:intergenic | 30.0% | |
| TATAAGTCAAAAAATGACGC+AGG | + | chr3.4:93036174-93036193 | None:intergenic | 30.0% | |
| TATATTTATTTAGGAGGGGA+TGG | - | chr3.4:93034835-93034854 | MS.gene80238:intron | 30.0% | |
| TGAAATTGTATGAATCAACC+AGG | - | chr3.4:93035570-93035589 | MS.gene80238:intron | 30.0% | |
| TTCATACAATTTCAATCAGG+AGG | + | chr3.4:93035564-93035583 | None:intergenic | 30.0% | |
| TTCCATCACATAAAGTCAAT+TGG | - | chr3.4:93035129-93035148 | MS.gene80238:intron | 30.0% | |
| ! | ATATCCTTATAGACTTGCTT+AGG | - | chr3.4:93036740-93036759 | MS.gene80238:CDS | 30.0% |
| ! | CAACAAATTTGAAGTGGAAT+AGG | + | chr3.4:93036678-93036697 | None:intergenic | 30.0% |
| ! | CACAAAAATGTGTAATTTGC+AGG | - | chr3.4:93034192-93034211 | MS.gene80238:intron | 30.0% |
| ! | CATCAAATTGATGATCAGAT+TGG | - | chr3.4:93035462-93035481 | MS.gene80238:intron | 30.0% |
| ! | CTGAATTATTGATAGCCTAT+TGG | - | chr3.4:93036476-93036495 | MS.gene80238:CDS | 30.0% |
| ! | GTTAAGACCTTTAAGCTTTT+AGG | + | chr3.4:93036590-93036609 | None:intergenic | 30.0% |
| ! | TATCCTTATAGACTTGCTTA+GGG | - | chr3.4:93036741-93036760 | MS.gene80238:CDS | 30.0% |
| !! | AGGAATAAAACTTTTAGGTG+TGG | - | chr3.4:93036117-93036136 | MS.gene80238:intron | 30.0% |
| !!! | AATGAAGCCTTCTTTTTTCA+GGG | - | chr3.4:93037002-93037021 | MS.gene80238:intron | 30.0% |
| !!! | TAATGAAGCCTTCTTTTTTC+AGG | - | chr3.4:93037001-93037020 | MS.gene80238:intron | 30.0% |
| AATTGTATGAATCAACCAGG+TGG | - | chr3.4:93035573-93035592 | MS.gene80238:intron | 35.0% | |
| AGGTACTCCTAAAAGCTTAA+AGG | - | chr3.4:93036580-93036599 | MS.gene80238:intron | 35.0% | |
| AGTGAAACAAATGTATGTGC+TGG | - | chr3.4:93035330-93035349 | MS.gene80238:intron | 35.0% | |
| ATAAAGAGTTGCAGATCTGT+TGG | + | chr3.4:93034090-93034109 | None:intergenic | 35.0% | |
| ATGAACAGAAATGTTGTACC+CGG | + | chr3.4:93034577-93034596 | None:intergenic | 35.0% | |
| ATGTGATGTTCATTACTGTG+TGG | - | chr3.4:93034941-93034960 | MS.gene80238:CDS | 35.0% | |
| ATTACTTGTTCACTTGTGCT+CGG | + | chr3.4:93036722-93036741 | None:intergenic | 35.0% | |
| CAATTATGTAGAACGTGCTA+AGG | - | chr3.4:93036248-93036267 | MS.gene80238:intron | 35.0% | |
| CACTTTCCTCTTAGATATTG+TGG | + | chr3.4:93035186-93035205 | None:intergenic | 35.0% | |
| CTTAGCACGTTCTACATAAT+TGG | + | chr3.4:93036250-93036269 | None:intergenic | 35.0% | |
| TAACCCTAAGCAAGTCTATA+AGG | + | chr3.4:93036747-93036766 | None:intergenic | 35.0% | |
| TAAGTCAAAAAATGACGCAG+GGG | + | chr3.4:93036172-93036191 | None:intergenic | 35.0% | |
| TCATGCAGTTTCTATCAGAA+TGG | - | chr3.4:93034056-93034075 | MS.gene80238:intron | 35.0% | |
| TGGAGGTAAACGTATCTAAT+TGG | - | chr3.4:93035593-93035612 | MS.gene80238:intron | 35.0% | |
| TTGATTGAACTTAAGCACAC+TGG | + | chr3.4:93035710-93035729 | None:intergenic | 35.0% | |
| TTTCGATATAAAGGCTGTCA+TGG | - | chr3.4:93035061-93035080 | MS.gene80238:intron | 35.0% | |
| TTTCTTATATTTAGCACGGG+AGG | + | chr3.4:93034732-93034751 | None:intergenic | 35.0% | |
| ! | AACTTTTATGTGGAATGGGA+TGG | - | chr3.4:93034673-93034692 | MS.gene80238:CDS | 35.0% |
| ! | ACCCTTAAGACCATTTTCTT+CGG | + | chr3.4:93033901-93033920 | None:intergenic | 35.0% |
| ! | AGCCAATTGACTTTATGTGA+TGG | + | chr3.4:93035134-93035153 | None:intergenic | 35.0% |
| ! | GACATTGTTGTTAGATCACA+AGG | - | chr3.4:93034236-93034255 | MS.gene80238:intron | 35.0% |
| ! | TCGGCAGGAATAAAACTTTT+AGG | - | chr3.4:93036112-93036131 | MS.gene80238:intron | 35.0% |
| ! | TTGTTCATTGAATCTGGTTC+TGG | - | chr3.4:93036195-93036214 | MS.gene80238:intron | 35.0% |
| ! | TTTTCCTCTTGATCTGCATT+GGG | - | chr3.4:93035380-93035399 | MS.gene80238:intron | 35.0% |
| ! | TTTTTCCTCTTGATCTGCAT+TGG | - | chr3.4:93035379-93035398 | MS.gene80238:intron | 35.0% |
| !! | AAACCATTTTTAGGGAAGTG+AGG | + | chr3.4:93033966-93033985 | None:intergenic | 35.0% |
| !! | AACCATTTTTAGGGAAGTGA+GGG | + | chr3.4:93033965-93033984 | None:intergenic | 35.0% |
| !! | ATATTGTGGGCTAGTTAACT+AGG | + | chr3.4:93035172-93035191 | None:intergenic | 35.0% |
| !! | TATATGTTTGGTTTGGTAGC+TGG | - | chr3.4:93035789-93035808 | MS.gene80238:intron | 35.0% |
| AAAAAAGTAGTGCATGAGGG+AGG | + | chr3.4:93034345-93034364 | None:intergenic | 40.0% | |
| AAAAAGTAGTGCATGAGGGA+GGG | + | chr3.4:93034344-93034363 | None:intergenic | 40.0% | |
| AAGCATTCATCTACTTGACG+TGG | + | chr3.4:93037071-93037090 | None:intergenic | 40.0% | |
| ACTAGCCCACAATATCTAAG+AGG | - | chr3.4:93035177-93035196 | MS.gene80238:intron | 40.0% | |
| AGGAGTGATCAAGTTACTTC+AGG | + | chr3.4:93035544-93035563 | None:intergenic | 40.0% | |
| ATGCACATTTCAGTTGTTGC+TGG | - | chr3.4:93034303-93034322 | MS.gene80238:intron | 40.0% | |
| ATGCAGGAATTGAAGCAAGA+GGG | - | chr3.4:93034479-93034498 | MS.gene80238:intron | 40.0% | |
| CAAGTTTCAGCAGCTAAAAG+TGG | + | chr3.4:93034641-93034660 | None:intergenic | 40.0% | |
| CATTTCAGTTGTTGCTGGTA+TGG | - | chr3.4:93034308-93034327 | MS.gene80238:intron | 40.0% | |
| TATGCAGGAATTGAAGCAAG+AGG | - | chr3.4:93034478-93034497 | MS.gene80238:intron | 40.0% | |
| TGATGTTCATTACTGTGTGG+AGG | - | chr3.4:93034944-93034963 | MS.gene80238:CDS | 40.0% | |
| TTACTTGTTCACTTGTGCTC+GGG | + | chr3.4:93036721-93036740 | None:intergenic | 40.0% | |
| TTATATTTAGCACGGGAGGA+GGG | + | chr3.4:93034728-93034747 | None:intergenic | 40.0% | |
| TTCTCCTGTTGTCGATATGA+GGG | - | chr3.4:93036783-93036802 | MS.gene80238:intron | 40.0% | |
| ! | AAAGCCACTTTATGTGCTTG+TGG | - | chr3.4:93037043-93037062 | MS.gene80238:CDS | 40.0% |
| ! | AGGGGATGGAGTATTATCTT+TGG | - | chr3.4:93034849-93034868 | MS.gene80238:intron | 40.0% |
| ! | ATTAGGTTTGGTTGGTATGC+AGG | - | chr3.4:93034463-93034482 | MS.gene80238:intron | 40.0% |
| ! | GCCGAAGAAAATGGTCTTAA+GGG | - | chr3.4:93033897-93033916 | MS.gene80238:CDS | 40.0% |
| ! | GCTGGTATTGTTGCTTAGTT+TGG | - | chr3.4:93035348-93035367 | MS.gene80238:intron | 40.0% |
| ! | GTCTTTGTTTGCATTCACAG+TGG | + | chr3.4:93035916-93035935 | None:intergenic | 40.0% |
| ! | TGCCGAAGAAAATGGTCTTA+AGG | - | chr3.4:93033896-93033915 | MS.gene80238:CDS | 40.0% |
| ! | TGTGATGGAACAACCAAAGT+AGG | + | chr3.4:93035119-93035138 | None:intergenic | 40.0% |
| !!! | AAGCCTTCTTTTTTCAGGGA+CGG | - | chr3.4:93037006-93037025 | MS.gene80238:CDS | 40.0% |
| ACACCGTCCCTGAAAAAAGA+AGG | + | chr3.4:93037012-93037031 | None:intergenic | 45.0% | |
| ACCAATGATGTGCGGTGTAA+AGG | + | chr3.4:93036835-93036854 | None:intergenic | 45.0% | |
| ACCTTTACACCGCACATCAT+TGG | - | chr3.4:93036831-93036850 | MS.gene80238:intron | 45.0% | |
| ATAACTATAGCCCGTTCACC+AGG | + | chr3.4:93036061-93036080 | None:intergenic | 45.0% | |
| CTTATATTTAGCACGGGAGG+AGG | + | chr3.4:93034729-93034748 | None:intergenic | 45.0% | |
| CTTCTCCTGTTGTCGATATG+AGG | - | chr3.4:93036782-93036801 | MS.gene80238:intron | 45.0% | |
| GAAGCAAGAGGGTTTGTGTT+TGG | - | chr3.4:93034490-93034509 | MS.gene80238:intron | 45.0% | |
| GGAAAAGGACCAATGATGTG+CGG | + | chr3.4:93036843-93036862 | None:intergenic | 45.0% | |
| GGAACAACCAAAGTAGGACA+AGG | + | chr3.4:93035113-93035132 | None:intergenic | 45.0% | |
| GGCTATAGTTATCGACGACT+TGG | - | chr3.4:93036069-93036088 | MS.gene80238:intron | 45.0% | |
| GGGAGATGTGTTGCAATCTA+GGG | + | chr3.4:93033926-93033945 | None:intergenic | 45.0% | |
| GTCCCTCACTTCCCTAAAAA+TGG | - | chr3.4:93033960-93033979 | MS.gene80238:intron | 45.0% | |
| GTGGAATGTGCTTGTGTGAT+TGG | - | chr3.4:93036279-93036298 | MS.gene80238:intron | 45.0% | |
| TAGATACGTTTACCTCCACC+TGG | + | chr3.4:93035591-93035610 | None:intergenic | 45.0% | |
| TGAGTTATTCCACTGTGCTG+CGG | - | chr3.4:93035886-93035905 | MS.gene80238:intron | 45.0% | |
| TGCAACAGGTGGAACTTTGT+CGG | - | chr3.4:93036093-93036112 | MS.gene80238:intron | 45.0% | |
| TGGGAGATGTGTTGCAATCT+AGG | + | chr3.4:93033927-93033946 | None:intergenic | 45.0% | |
| TGTATGAATCAACCAGGTGG+AGG | - | chr3.4:93035576-93035595 | MS.gene80238:intron | 45.0% | |
| TTAAGGAGAGTTGGATCTCC+AGG | + | chr3.4:93036884-93036903 | None:intergenic | 45.0% | |
| TTGACCCAATGCAGATCAAG+AGG | + | chr3.4:93035387-93035406 | None:intergenic | 45.0% | |
| !! | CTGGGTGTTTTTGTCTGTGT+TGG | - | chr3.4:93034149-93034168 | MS.gene80238:intron | 45.0% |
| !! | TTTGGTTCTGCAGTTGCGTT+GGG | - | chr3.4:93034508-93034527 | MS.gene80238:intron | 45.0% |
| !! | AAATAAATATAAATAAAGTT+AGG | + | chr3.4:93034826-93034845 | None:intergenic | 5.0% |
| !! | TAAAATTAAATAAGAAAAAA+AGG | + | chr3.4:93034010-93034029 | None:intergenic | 5.0% |
| !!! | AACTTTATTTATATTTATTT+AGG | - | chr3.4:93034826-93034845 | MS.gene80238:intron | 5.0% |
| !!! | ATTTTTTATTAAAAATGTTA+AGG | + | chr3.4:93036901-93036920 | None:intergenic | 5.0% |
| ACACCAACCCCGTTGTCAAA+TGG | + | chr3.4:93034700-93034719 | None:intergenic | 50.0% | |
| ACGTGCTAAGGCTGAAGTAG+TGG | - | chr3.4:93036260-93036279 | MS.gene80238:intron | 50.0% | |
| AGCTTGCGAGGTTTGCGTAA+AGG | + | chr3.4:93034553-93034572 | None:intergenic | 50.0% | |
| CACCAACCCCGTTGTCAAAT+GGG | + | chr3.4:93034699-93034718 | None:intergenic | 50.0% | |
| CAGGGACGGTGTAAACTTCT+TGG | - | chr3.4:93037020-93037039 | MS.gene80238:CDS | 50.0% | |
| CTGAGCCATACCTTAACCTC+AGG | + | chr3.4:93036309-93036328 | None:intergenic | 50.0% | |
| GATTGGTGTGCCTGAGGTTA+AGG | - | chr3.4:93036296-93036315 | MS.gene80238:intron | 50.0% | |
| GGCTCCACAAGCACATAAAG+TGG | + | chr3.4:93037050-93037069 | None:intergenic | 50.0% | |
| GTAGCCCTCATATCGACAAC+AGG | + | chr3.4:93036790-93036809 | None:intergenic | 50.0% | |
| GTGTGCCTGAGGTTAAGGTA+TGG | - | chr3.4:93036301-93036320 | MS.gene80238:intron | 50.0% | |
| TCTGCAGTTGCGTTGGGAAT+TGG | - | chr3.4:93034514-93034533 | MS.gene80238:intron | 50.0% | |
| TGGGATGGCCCATTTGACAA+CGG | - | chr3.4:93034688-93034707 | MS.gene80238:CDS | 50.0% | |
| TGTCGATATGAGGGCTACGT+TGG | - | chr3.4:93036792-93036811 | MS.gene80238:intron | 50.0% | |
| TTGTGTGATTGGTGTGCCTG+AGG | - | chr3.4:93036290-93036309 | MS.gene80238:intron | 50.0% | |
| ! | AAAGGCTGTCATGGTCTTGC+TGG | - | chr3.4:93035070-93035089 | MS.gene80238:intron | 50.0% |
| ! | AAGGCTGTCATGGTCTTGCT+GGG | - | chr3.4:93035071-93035090 | MS.gene80238:intron | 50.0% |
| ! | GGAAAGGCCTTGTCCTACTT+TGG | - | chr3.4:93035103-93035122 | MS.gene80238:intron | 50.0% |
| !! | ATCGACGACTTGGTTGCAAC+AGG | - | chr3.4:93036079-93036098 | MS.gene80238:intron | 50.0% |
| !! | GTTTGGTTCTGCAGTTGCGT+TGG | - | chr3.4:93034507-93034526 | MS.gene80238:intron | 50.0% |
| ACAGGTGGAACTTTGTCGGC+AGG | - | chr3.4:93036097-93036116 | MS.gene80238:intron | 55.0% | |
| ACCAAGGCAGGGTCAGGAAA+AGG | + | chr3.4:93036858-93036877 | None:intergenic | 55.0% | |
| ACGCAAACCTCGCAAGCTAC+CGG | - | chr3.4:93034555-93034574 | MS.gene80238:intron | 55.0% | |
| CTATAGCCCGTTCACCAGGT+TGG | + | chr3.4:93036057-93036076 | None:intergenic | 55.0% | |
| GAAGTGAGGGACGACTCTGA+TGG | + | chr3.4:93033952-93033971 | None:intergenic | 55.0% | |
| GGATGGCCCATTTGACAACG+GGG | - | chr3.4:93034690-93034709 | MS.gene80238:CDS | 55.0% | |
| GGGATGGCCCATTTGACAAC+GGG | - | chr3.4:93034689-93034708 | MS.gene80238:CDS | 55.0% | |
| TTGGATCTCCAGGCACACCA+AGG | + | chr3.4:93036874-93036893 | None:intergenic | 55.0% | |
| ! | TCCTTTTCCTGACCCTGCCT+TGG | - | chr3.4:93036854-93036873 | MS.gene80238:intron | 55.0% |
| !! | AGGGACGACTCTGATGGACT+GGG | + | chr3.4:93033946-93033965 | None:intergenic | 55.0% |
| !! | GACGACTTGGTTGCAACAGG+TGG | - | chr3.4:93036082-93036101 | MS.gene80238:intron | 55.0% |
| AGTGGAATGCCGCAGCACAG+TGG | + | chr3.4:93035898-93035917 | None:intergenic | 60.0% | |
| ATCTCCAGGCACACCAAGGC+AGG | + | chr3.4:93036870-93036889 | None:intergenic | 60.0% | |
| CGCAAACCTCGCAAGCTACC+GGG | - | chr3.4:93034556-93034575 | MS.gene80238:intron | 60.0% | |
| CGCTGTCCAACCTGGTGAAC+GGG | - | chr3.4:93036048-93036067 | MS.gene80238:intron | 60.0% | |
| GCGCTGTCCAACCTGGTGAA+CGG | - | chr3.4:93036047-93036066 | MS.gene80238:intron | 60.0% | |
| GGCCCATTTGACAACGGGGT+TGG | - | chr3.4:93034694-93034713 | MS.gene80238:CDS | 60.0% | |
| GGTCTTGCTGGGACTGTGTG+CGG | - | chr3.4:93035082-93035101 | MS.gene80238:intron | 60.0% | |
| TCTCCAGGCACACCAAGGCA+GGG | + | chr3.4:93036869-93036888 | None:intergenic | 60.0% | |
| TGCTGGGACTGTGTGCGGAA+AGG | - | chr3.4:93035087-93035106 | MS.gene80238:intron | 60.0% | |
| ! | GAGGGACGACTCTGATGGAC+TGG | + | chr3.4:93033947-93033966 | None:intergenic | 60.0% |
| ! | GTTGTACCCGGTAGCTTGCG+AGG | + | chr3.4:93034565-93034584 | None:intergenic | 60.0% |
| AGGCACACCAAGGCAGGGTC+AGG | + | chr3.4:93036864-93036883 | None:intergenic | 65.0% | |
| CATGTCGGCGCTGTCCAACC+TGG | - | chr3.4:93036040-93036059 | MS.gene80238:intron | 65.0% | |
| ! | TGACCCTGCCTTGGTGTGCC+TGG | - | chr3.4:93036863-93036882 | MS.gene80238:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93033891 | 93037094 | 93033891 | ID=MS.gene80238 |
| chr3.4 | mRNA | 93033891 | 93037094 | 93033891 | ID=MS.gene80238.t1;Parent=MS.gene80238 |
| chr3.4 | exon | 93037004 | 93037094 | 93037004 | ID=MS.gene80238.t1.exon1;Parent=MS.gene80238.t1 |
| chr3.4 | CDS | 93037004 | 93037094 | 93037004 | ID=cds.MS.gene80238.t1;Parent=MS.gene80238.t1 |
| chr3.4 | exon | 93036661 | 93036771 | 93036661 | ID=MS.gene80238.t1.exon2;Parent=MS.gene80238.t1 |
| chr3.4 | CDS | 93036661 | 93036771 | 93036661 | ID=cds.MS.gene80238.t1;Parent=MS.gene80238.t1 |
| chr3.4 | exon | 93036408 | 93036500 | 93036408 | ID=MS.gene80238.t1.exon3;Parent=MS.gene80238.t1 |
| chr3.4 | CDS | 93036408 | 93036500 | 93036408 | ID=cds.MS.gene80238.t1;Parent=MS.gene80238.t1 |
| chr3.4 | exon | 93034852 | 93035001 | 93034852 | ID=MS.gene80238.t1.exon4;Parent=MS.gene80238.t1 |
| chr3.4 | CDS | 93034852 | 93035001 | 93034852 | ID=cds.MS.gene80238.t1;Parent=MS.gene80238.t1 |
| chr3.4 | exon | 93034668 | 93034726 | 93034668 | ID=MS.gene80238.t1.exon5;Parent=MS.gene80238.t1 |
| chr3.4 | CDS | 93034668 | 93034726 | 93034668 | ID=cds.MS.gene80238.t1;Parent=MS.gene80238.t1 |
| chr3.4 | exon | 93033891 | 93033962 | 93033891 | ID=MS.gene80238.t1.exon6;Parent=MS.gene80238.t1 |
| chr3.4 | CDS | 93033891 | 93033962 | 93033891 | ID=cds.MS.gene80238.t1;Parent=MS.gene80238.t1 |
| Gene Sequence |
| Protein sequence |
