Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80479.t1 | XP_024627646.1 | 66.3 | 184 | 36 | 2 | 1 | 159 | 1 | 183 | 1.50E-61 | 246.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80479.t1 | Q84WU2 | 27.3 | 139 | 71 | 4 | 30 | 146 | 50 | 180 | 2.1e-08 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80479.t1 | A0A396GIL6 | 66.3 | 184 | 36 | 2 | 1 | 159 | 1 | 183 | 1.1e-61 | 246.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene80479 | 0.807477 | 4.96E-50 | -1.69E-46 |
| MS.gene049634 | MS.gene80479 | 0.809829 | 1.56E-50 | -1.69E-46 |
| MS.gene05079 | MS.gene80479 | 0.806363 | 8.53E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene80479 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene80479 | 0.824118 | 9.60E-54 | -1.69E-46 |
| MS.gene056224 | MS.gene80479 | 0.816888 | 4.38E-52 | -1.69E-46 |
| MS.gene056857 | MS.gene80479 | 0.805002 | 1.65E-49 | -1.69E-46 |
| MS.gene057768 | MS.gene80479 | 0.806548 | 7.80E-50 | -1.69E-46 |
| MS.gene058117 | MS.gene80479 | 0.803983 | 2.69E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene80479 | 0.807817 | 4.20E-50 | -1.69E-46 |
| MS.gene058173 | MS.gene80479 | 0.808256 | 3.39E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene80479 | 0.818353 | 2.05E-52 | -1.69E-46 |
| MS.gene058603 | MS.gene80479 | 0.8283 | 9.70E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80479.t1 | MTR_8g006190 | 58.696 | 138 | 31 | 2 | 47 | 159 | 1 | 137 | 6.39e-47 | 160 |
| MS.gene80479.t1 | MTR_8g006190 | 57.627 | 118 | 24 | 2 | 67 | 159 | 13 | 129 | 3.12e-35 | 129 |
| MS.gene80479.t1 | MTR_4g123750 | 41.611 | 149 | 61 | 3 | 23 | 146 | 7 | 154 | 1.66e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80479.t1 | AT3G17380 | 42.069 | 145 | 61 | 2 | 24 | 146 | 10 | 153 | 6.93e-28 | 107 |
| MS.gene80479.t1 | AT5G26290 | 39.189 | 148 | 65 | 3 | 23 | 147 | 42 | 187 | 7.10e-26 | 102 |
| MS.gene80479.t1 | AT5G26280 | 36.242 | 149 | 70 | 3 | 22 | 147 | 48 | 194 | 5.54e-24 | 97.8 |
| MS.gene80479.t1 | AT5G26280 | 36.242 | 149 | 70 | 3 | 22 | 147 | 67 | 213 | 8.65e-24 | 97.8 |
| MS.gene80479.t1 | AT5G26300 | 37.255 | 153 | 72 | 3 | 17 | 147 | 43 | 193 | 9.21e-24 | 97.4 |
| MS.gene80479.t1 | AT5G26260 | 31.481 | 162 | 86 | 3 | 25 | 163 | 52 | 211 | 2.10e-20 | 88.2 |
| MS.gene80479.t1 | AT5G26320 | 29.070 | 172 | 95 | 4 | 17 | 163 | 43 | 212 | 5.27e-19 | 84.3 |
| MS.gene80479.t1 | AT2G04170 | 36.429 | 140 | 64 | 3 | 29 | 145 | 3 | 140 | 2.25e-18 | 82.0 |
| MS.gene80479.t1 | AT2G04170 | 36.429 | 140 | 64 | 3 | 29 | 145 | 3 | 140 | 2.25e-18 | 82.0 |
| MS.gene80479.t1 | AT2G04170 | 36.429 | 140 | 64 | 3 | 29 | 145 | 85 | 222 | 5.42e-18 | 81.6 |
| MS.gene80479.t1 | AT2G04170 | 36.429 | 140 | 64 | 3 | 29 | 145 | 125 | 262 | 6.02e-18 | 81.6 |
| MS.gene80479.t1 | AT2G04170 | 36.429 | 140 | 64 | 3 | 29 | 145 | 125 | 262 | 6.02e-18 | 81.6 |
| MS.gene80479.t1 | AT2G04170 | 36.429 | 140 | 64 | 3 | 29 | 145 | 125 | 262 | 8.88e-18 | 80.9 |
| MS.gene80479.t1 | AT2G04170 | 36.429 | 140 | 64 | 3 | 29 | 145 | 125 | 262 | 1.29e-17 | 80.1 |
| MS.gene80479.t1 | AT3G28220 | 32.051 | 156 | 81 | 4 | 29 | 159 | 76 | 231 | 2.91e-17 | 79.7 |
| MS.gene80479.t1 | AT3G22080 | 32.051 | 156 | 79 | 4 | 26 | 154 | 12 | 167 | 6.61e-17 | 78.2 |
| MS.gene80479.t1 | AT3G20360 | 28.931 | 159 | 89 | 2 | 29 | 163 | 62 | 220 | 2.77e-16 | 76.6 |
| MS.gene80479.t1 | AT3G20370 | 30.000 | 190 | 102 | 6 | 3 | 166 | 58 | 242 | 4.32e-16 | 76.3 |
| MS.gene80479.t1 | AT3G20370 | 30.000 | 190 | 102 | 6 | 3 | 166 | 36 | 220 | 6.79e-16 | 75.5 |
| MS.gene80479.t1 | AT4G09770 | 31.973 | 147 | 72 | 5 | 24 | 147 | 26 | 167 | 8.41e-16 | 75.1 |
| MS.gene80479.t1 | AT4G09770 | 31.973 | 147 | 72 | 5 | 24 | 147 | 26 | 167 | 8.42e-16 | 74.7 |
| MS.gene80479.t1 | AT4G09770 | 32.394 | 142 | 68 | 5 | 29 | 147 | 5 | 141 | 8.96e-16 | 73.9 |
| MS.gene80479.t1 | AT4G09770 | 32.394 | 142 | 68 | 5 | 29 | 147 | 5 | 141 | 1.06e-15 | 74.3 |
| MS.gene80479.t1 | AT4G09770 | 32.394 | 142 | 68 | 5 | 29 | 147 | 5 | 141 | 1.06e-15 | 74.3 |
| MS.gene80479.t1 | AT4G09780 | 29.932 | 147 | 76 | 4 | 24 | 147 | 53 | 195 | 4.03e-15 | 73.6 |
| MS.gene80479.t1 | AT4G09780 | 29.932 | 147 | 76 | 4 | 24 | 147 | 53 | 195 | 4.43e-15 | 73.6 |
| MS.gene80479.t1 | AT2G04190 | 30.128 | 156 | 83 | 4 | 15 | 146 | 101 | 254 | 4.56e-15 | 73.6 |
| MS.gene80479.t1 | AT3G22085 | 34.328 | 134 | 76 | 4 | 29 | 154 | 14 | 143 | 4.16e-14 | 70.1 |
| MS.gene80479.t1 | AT2G15710 | 34.375 | 160 | 74 | 6 | 29 | 161 | 94 | 249 | 7.32e-14 | 69.7 |
| MS.gene80479.t1 | AT3G20380 | 26.250 | 160 | 94 | 2 | 23 | 159 | 76 | 234 | 5.47e-12 | 64.3 |
| MS.gene80479.t1 | AT5G26280 | 28.188 | 149 | 59 | 4 | 22 | 147 | 48 | 171 | 3.56e-11 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTGGCCATTCTGGAAAT+TGG | 0.215930 | 6.3:-37784304 | MS.gene80479:CDS |
| GTTCTTGTGATTGGCCATTC+TGG | 0.256792 | 6.3:-37784311 | MS.gene80479:CDS |
| CGGTGGCAAGCCTCAAATAT+TGG | 0.286140 | 6.3:-37784225 | MS.gene80479:CDS |
| TTCGATCGAGCAGAAGAAAA+TGG | 0.350125 | 6.3:-37784010 | MS.gene80479:CDS |
| ATCTGCAATAGTAAGGTATA+AGG | 0.371930 | 6.3:+37784637 | None:intergenic |
| GAAAATGCCGTTGTCTGATC+TGG | 0.401267 | 6.3:-37785345 | None:intergenic |
| AGGCTTGCCACCGCCGGTGG+AGG | 0.409343 | 6.3:+37784235 | None:intergenic |
| ATCTGGAAAGAGTTTGTATC+CGG | 0.415813 | 6.3:-37785328 | MS.gene80479:CDS |
| AAGCGTAAACGTGACTGATA+TGG | 0.415816 | 6.3:+37784049 | None:intergenic |
| GGAGCTGAAGTTCTTGTGAT+TGG | 0.415846 | 6.3:-37784320 | MS.gene80479:CDS |
| GGTGGCAAGCCTCAAATATT+GGG | 0.418440 | 6.3:-37784224 | MS.gene80479:CDS |
| GACAAGCCTCGAACAACATC+TGG | 0.423058 | 6.3:-37784260 | MS.gene80479:CDS |
| TTATATTTGTTGTAGGAAGT+TGG | 0.427408 | 6.3:-37784708 | MS.gene80479:intron |
| GAAGAAGGTACATGCGTGTT+TGG | 0.433121 | 6.3:-37784341 | MS.gene80479:CDS |
| AACAATTATTTGACCATCCA+AGG | 0.454086 | 6.3:-37784545 | MS.gene80479:intron |
| TTCCTTGGCTGTGGACGAAA+AGG | 0.458291 | 6.3:-37784880 | MS.gene80479:CDS |
| AAACAAGCTTTCTCGTGGTT+GGG | 0.458923 | 6.3:-37784612 | MS.gene80479:CDS |
| GATTGGCCATTCTGGAAATT+GGG | 0.467944 | 6.3:-37784303 | MS.gene80479:CDS |
| TGTTTGTATCTGCAATAGTA+AGG | 0.468822 | 6.3:+37784630 | None:intergenic |
| GAACTCTTTGATCCATGTAA+TGG | 0.468879 | 6.3:-37784374 | MS.gene80479:CDS |
| TCTGGCTCCTCCACCGGCGG+TGG | 0.469678 | 6.3:-37784242 | MS.gene80479:CDS |
| AAGTTTCCCAATTTCCAGAA+TGG | 0.481189 | 6.3:+37784297 | None:intergenic |
| CAAACAAGCTTTCTCGTGGT+TGG | 0.484063 | 6.3:-37784613 | MS.gene80479:CDS |
| GAGTCGGAGCCCAATATTTG+AGG | 0.498105 | 6.3:+37784215 | None:intergenic |
| TCATCAACGTATCCATTACA+TGG | 0.498278 | 6.3:+37784362 | None:intergenic |
| GATGATATGTATACCTTGGA+TGG | 0.518799 | 6.3:+37784532 | None:intergenic |
| TTGGGCTCCGACTCTGTTGG+CGG | 0.528844 | 6.3:-37784206 | MS.gene80479:intron |
| TTCAAGCTGGTGGATACTCA+TGG | 0.530987 | 6.3:-37784833 | MS.gene80479:intron |
| TTGAGGCTTGCCACCGCCGG+TGG | 0.532648 | 6.3:+37784232 | None:intergenic |
| GAGGAGCCAGATGTTGTTCG+AGG | 0.537973 | 6.3:+37784254 | None:intergenic |
| ATCTTAAACAAGTAATCAGC+TGG | 0.540985 | 6.3:+37784912 | None:intergenic |
| TCAAGTGCTCGTTGTGGTGT+TGG | 0.553226 | 6.3:-37785296 | MS.gene80479:intron |
| GAAAATGGATGGATTAAAGA+CGG | 0.553351 | 6.3:-37783995 | MS.gene80479:CDS |
| CCACAGCCAAGGAAAACGAT+TGG | 0.561150 | 6.3:+37784889 | None:intergenic |
| ACAACATCTGGCTCCTCCAC+CGG | 0.561761 | 6.3:-37784248 | MS.gene80479:CDS |
| ATCGAGCAGAAGAAAATGGA+TGG | 0.566913 | 6.3:-37784006 | MS.gene80479:CDS |
| CAAGCTTTCTCGTGGTTGGG+AGG | 0.572497 | 6.3:-37784609 | MS.gene80479:CDS |
| TATTTGAGGCTTGCCACCGC+CGG | 0.573001 | 6.3:+37784229 | None:intergenic |
| GAGCACTTGAGGTTGGCTCC+CGG | 0.579399 | 6.3:+37785309 | None:intergenic |
| AAGTTGGTACTCTACCCAAA+TGG | 0.581141 | 6.3:-37784692 | MS.gene80479:CDS |
| TGTTGTTCGAGGCTTGTCAC+CGG | 0.581750 | 6.3:+37784265 | None:intergenic |
| AATGGATACGTTGATGAAGA+AGG | 0.590591 | 6.3:-37784356 | MS.gene80479:CDS |
| CCACAACGAGCACTTGAGGT+TGG | 0.599713 | 6.3:+37785302 | None:intergenic |
| GTTGCCACCGCCAACAGAGT+CGG | 0.599829 | 6.3:+37784199 | None:intergenic |
| ACATCTGGCTCCTCCACCGG+CGG | 0.606029 | 6.3:-37784245 | MS.gene80479:CDS |
| ATATTGGGCTCCGACTCTGT+TGG | 0.627268 | 6.3:-37784209 | MS.gene80479:CDS |
| TAGTAAGGTATAAGGAAACA+TGG | 0.628324 | 6.3:+37784645 | None:intergenic |
| AACACCACAACGAGCACTTG+AGG | 0.648489 | 6.3:+37785298 | None:intergenic |
| TTAAACAAGTAATCAGCTGG+TGG | 0.648634 | 6.3:+37784915 | None:intergenic |
| TCTGGAAAGAGTTTGTATCC+GGG | 0.648666 | 6.3:-37785327 | MS.gene80479:CDS |
| GATACAAACAAGCTTTCTCG+TGG | 0.650785 | 6.3:-37784617 | MS.gene80479:CDS |
| AATGGTAAATCAAAACGAAG+TGG | 0.657504 | 6.3:-37784674 | MS.gene80479:CDS |
| CCAACCTCAAGTGCTCGTTG+TGG | 0.696181 | 6.3:-37785302 | MS.gene80479:CDS |
| TCTGCTCGATCGAATATATG+CGG | 0.705289 | 6.3:+37784019 | None:intergenic |
| ACTCTTTCCAGATCAGACAA+CGG | 0.731328 | 6.3:+37785338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTTATAAAAAAACATAA+TGG | + | chr6.3:37784165-37784184 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTTATAAGAAACA+TGG | - | chr6.3:37784167-37784186 | MS.gene80479:intron | 15.0% |
| !!! | TTTTTAAGTTGTATATTTGT+CGG | + | chr6.3:37785154-37785173 | None:intergenic | 15.0% |
| !! | ACAGAAAAAATATACAACTT+AGG | + | chr6.3:37785223-37785242 | None:intergenic | 20.0% |
| !! | TAATGAAATGAAAACTGAAT+GGG | - | chr6.3:37784904-37784923 | MS.gene80479:CDS | 20.0% |
| !! | TTAATGAAATGAAAACTGAA+TGG | - | chr6.3:37784903-37784922 | MS.gene80479:CDS | 20.0% |
| !! | TTTGAGCAATTAAATTTCAT+TGG | - | chr6.3:37784929-37784948 | MS.gene80479:CDS | 20.0% |
| ! | AATGAAATGAAAACTGAATG+GGG | - | chr6.3:37784905-37784924 | MS.gene80479:CDS | 25.0% |
| ! | TGAAATACCTGAGTTTATAT+AGG | + | chr6.3:37784375-37784394 | None:intergenic | 25.0% |
| !!! | GTTGTTGTTATATTTGTTGT+AGG | - | chr6.3:37784613-37784632 | MS.gene80479:CDS | 25.0% |
| !!! | TTATATTTGTTGTAGGAAGT+TGG | - | chr6.3:37784620-37784639 | MS.gene80479:CDS | 25.0% |
| !!! | TTCGTTTTGATTTACCATTT+GGG | + | chr6.3:37784653-37784672 | None:intergenic | 25.0% |
| AACAATTATTTGACCATCCA+AGG | - | chr6.3:37784783-37784802 | MS.gene80479:intron | 30.0% | |
| AACCATAAGGTTGTAACAAT+GGG | - | chr6.3:37784217-37784236 | MS.gene80479:CDS | 30.0% | |
| AATGGTAAATCAAAACGAAG+TGG | - | chr6.3:37784654-37784673 | MS.gene80479:CDS | 30.0% | |
| AGTAGATGATATGTATACCT+TGG | + | chr6.3:37784803-37784822 | None:intergenic | 30.0% | |
| ATCTGCAATAGTAAGGTATA+AGG | + | chr6.3:37784694-37784713 | None:intergenic | 30.0% | |
| ATCTTAAACAAGTAATCAGC+TGG | + | chr6.3:37784419-37784438 | None:intergenic | 30.0% | |
| TAGTAAGGTATAAGGAAACA+TGG | + | chr6.3:37784686-37784705 | None:intergenic | 30.0% | |
| TCATCTACCTATATAAACTC+AGG | - | chr6.3:37784365-37784384 | MS.gene80479:CDS | 30.0% | |
| TGTTTGTATCTGCAATAGTA+AGG | + | chr6.3:37784701-37784720 | None:intergenic | 30.0% | |
| !! | GAAAATGGATGGATTAAAGA+CGG | - | chr6.3:37785333-37785352 | MS.gene80479:CDS | 30.0% |
| !!! | CTTCGTTTTGATTTACCATT+TGG | + | chr6.3:37784654-37784673 | None:intergenic | 30.0% |
| AAGTTTCCCAATTTCCAGAA+TGG | + | chr6.3:37785034-37785053 | None:intergenic | 35.0% | |
| ATCTGGAAAGAGTTTGTATC+CGG | - | chr6.3:37784000-37784019 | MS.gene80479:CDS | 35.0% | |
| CAACCATAAGGTTGTAACAA+TGG | - | chr6.3:37784216-37784235 | MS.gene80479:CDS | 35.0% | |
| CATTGTTACAACCTTATGGT+TGG | + | chr6.3:37784218-37784237 | None:intergenic | 35.0% | |
| CTTACATGTTTCCTTTCGTT+CGG | - | chr6.3:37784537-37784556 | MS.gene80479:intron | 35.0% | |
| GAACGAAAGGAAACATGTAA+GGG | + | chr6.3:37784538-37784557 | None:intergenic | 35.0% | |
| GAACTCTTTGATCCATGTAA+TGG | - | chr6.3:37784954-37784973 | MS.gene80479:intron | 35.0% | |
| GATGATATGTATACCTTGGA+TGG | + | chr6.3:37784799-37784818 | None:intergenic | 35.0% | |
| TCATCAACGTATCCATTACA+TGG | + | chr6.3:37784969-37784988 | None:intergenic | 35.0% | |
| TTAAACAAGTAATCAGCTGG+TGG | + | chr6.3:37784416-37784435 | None:intergenic | 35.0% | |
| TTGATTACTGTAGATGCTGA+TGG | - | chr6.3:37784866-37784885 | MS.gene80479:CDS | 35.0% | |
| ! | AATGGATACGTTGATGAAGA+AGG | - | chr6.3:37784972-37784991 | MS.gene80479:intron | 35.0% |
| ! | TAAGATCCAATCGTTTTCCT+TGG | - | chr6.3:37784433-37784452 | MS.gene80479:intron | 35.0% |
| !!! | GAGTCAAATGTTTTTCAAGC+TGG | - | chr6.3:37784482-37784501 | MS.gene80479:intron | 35.0% |
| !!! | TCAAATGTTTTTCAAGCTGG+TGG | - | chr6.3:37784485-37784504 | MS.gene80479:intron | 35.0% |
| AAACAAGCTTTCTCGTGGTT+GGG | - | chr6.3:37784716-37784735 | MS.gene80479:intron | 40.0% | |
| AAGCGTAAACGTGACTGATA+TGG | + | chr6.3:37785282-37785301 | None:intergenic | 40.0% | |
| ACTCTTTCCAGATCAGACAA+CGG | + | chr6.3:37783993-37784012 | None:intergenic | 40.0% | |
| ATCGAGCAGAAGAAAATGGA+TGG | - | chr6.3:37785322-37785341 | MS.gene80479:CDS | 40.0% | |
| CACCCATTGTTACAACCTTA+TGG | + | chr6.3:37784222-37784241 | None:intergenic | 40.0% | |
| CGAACGAAAGGAAACATGTA+AGG | + | chr6.3:37784539-37784558 | None:intergenic | 40.0% | |
| GATACAAACAAGCTTTCTCG+TGG | - | chr6.3:37784711-37784730 | MS.gene80479:intron | 40.0% | |
| TATCCTCACAACCAACCATA+AGG | - | chr6.3:37784204-37784223 | MS.gene80479:intron | 40.0% | |
| TCGGTCAATGTTTGGAAAGT+AGG | - | chr6.3:37784556-37784575 | MS.gene80479:CDS | 40.0% | |
| TCTGCTCGATCGAATATATG+CGG | + | chr6.3:37785312-37785331 | None:intergenic | 40.0% | |
| TCTGGAAAGAGTTTGTATCC+GGG | - | chr6.3:37784001-37784020 | MS.gene80479:CDS | 40.0% | |
| TTCGATCGAGCAGAAGAAAA+TGG | - | chr6.3:37785318-37785337 | MS.gene80479:CDS | 40.0% | |
| ! | GATTGGCCATTCTGGAAATT+GGG | - | chr6.3:37785025-37785044 | MS.gene80479:intron | 40.0% |
| ! | GGTTGTGAGGATATTTTGTG+TGG | + | chr6.3:37784197-37784216 | None:intergenic | 40.0% |
| ! | TGATTGGCCATTCTGGAAAT+TGG | - | chr6.3:37785024-37785043 | MS.gene80479:intron | 40.0% |
| ! | TGGGAAACTTTTGATGTGTC+CGG | - | chr6.3:37785044-37785063 | MS.gene80479:intron | 40.0% |
| !! | AAGTTGGTACTCTACCCAAA+TGG | - | chr6.3:37784636-37784655 | MS.gene80479:CDS | 40.0% |
| CAAACAAGCTTTCTCGTGGT+TGG | - | chr6.3:37784715-37784734 | MS.gene80479:intron | 45.0% | |
| CCAAACATTGACCGAACGAA+AGG | + | chr6.3:37784551-37784570 | None:intergenic | 45.0% | |
| CCTTTCGTTCGGTCAATGTT+TGG | - | chr6.3:37784548-37784567 | MS.gene80479:CDS | 45.0% | |
| GGAGCTGAAGTTCTTGTGAT+TGG | - | chr6.3:37785008-37785027 | MS.gene80479:intron | 45.0% | |
| GGTGGCAAGCCTCAAATATT+GGG | - | chr6.3:37785104-37785123 | MS.gene80479:intron | 45.0% | |
| ! | CAACCTTATGGTTGGTTGTG+AGG | + | chr6.3:37784210-37784229 | None:intergenic | 45.0% |
| ! | GAAGAAGGTACATGCGTGTT+TGG | - | chr6.3:37784987-37785006 | MS.gene80479:intron | 45.0% |
| ! | GTTCTTGTGATTGGCCATTC+TGG | - | chr6.3:37785017-37785036 | MS.gene80479:intron | 45.0% |
| ! | TTCAAGCTGGTGGATACTCA+TGG | - | chr6.3:37784495-37784514 | MS.gene80479:intron | 45.0% |
| AACACCACAACGAGCACTTG+AGG | + | chr6.3:37784033-37784052 | None:intergenic | 50.0% | |
| ATATTGGGCTCCGACTCTGT+TGG | - | chr6.3:37785119-37785138 | MS.gene80479:intron | 50.0% | |
| CCACAGCCAAGGAAAACGAT+TGG | + | chr6.3:37784442-37784461 | None:intergenic | 50.0% | |
| CGGTGGCAAGCCTCAAATAT+TGG | - | chr6.3:37785103-37785122 | MS.gene80479:intron | 50.0% | |
| GACAAGCCTCGAACAACATC+TGG | - | chr6.3:37785068-37785087 | MS.gene80479:intron | 50.0% | |
| GAGTCGGAGCCCAATATTTG+AGG | + | chr6.3:37785116-37785135 | None:intergenic | 50.0% | |
| TCAAGTGCTCGTTGTGGTGT+TGG | - | chr6.3:37784032-37784051 | MS.gene80479:CDS | 50.0% | |
| TGTTGTTCGAGGCTTGTCAC+CGG | + | chr6.3:37785066-37785085 | None:intergenic | 50.0% | |
| TTCCTTGGCTGTGGACGAAA+AGG | - | chr6.3:37784448-37784467 | MS.gene80479:intron | 50.0% | |
| ! | CCAATCGTTTTCCTTGGCTG+TGG | - | chr6.3:37784439-37784458 | MS.gene80479:intron | 50.0% |
| ! | TACTGTAGATGCTGATGGCG+TGG | - | chr6.3:37784871-37784890 | MS.gene80479:CDS | 50.0% |
| CAAGCTTTCTCGTGGTTGGG+AGG | - | chr6.3:37784719-37784738 | MS.gene80479:intron | 55.0% | |
| CACATCGCGACTAAGCGAGA+GGG | + | chr6.3:37785259-37785278 | None:intergenic | 55.0% | |
| CCAACCTCAAGTGCTCGTTG+TGG | - | chr6.3:37784026-37784045 | MS.gene80479:CDS | 55.0% | |
| CCACAACGAGCACTTGAGGT+TGG | + | chr6.3:37784029-37784048 | None:intergenic | 55.0% | |
| GAGGAGCCAGATGTTGTTCG+AGG | + | chr6.3:37785077-37785096 | None:intergenic | 55.0% | |
| ! | ACAACATCTGGCTCCTCCAC+CGG | - | chr6.3:37785080-37785099 | MS.gene80479:intron | 55.0% |
| ! | CACCTTTTCGTCCACAGCCA+AGG | + | chr6.3:37784453-37784472 | None:intergenic | 55.0% |
| ! | TATTTGAGGCTTGCCACCGC+CGG | + | chr6.3:37785102-37785121 | None:intergenic | 55.0% |
| GCACATCGCGACTAAGCGAG+AGG | + | chr6.3:37785260-37785279 | None:intergenic | 60.0% | |
| GTTGCCACCGCCAACAGAGT+CGG | + | chr6.3:37785132-37785151 | None:intergenic | 60.0% | |
| TTGGGCTCCGACTCTGTTGG+CGG | - | chr6.3:37785122-37785141 | MS.gene80479:intron | 60.0% | |
| ! | GAGCACTTGAGGTTGGCTCC+CGG | + | chr6.3:37784022-37784041 | None:intergenic | 60.0% |
| ! | ACATCTGGCTCCTCCACCGG+CGG | - | chr6.3:37785083-37785102 | MS.gene80479:intron | 65.0% |
| GGCTCCGACTCTGTTGGCGG+TGG | - | chr6.3:37785125-37785144 | MS.gene80479:intron | 70.0% | |
| TTGAGGCTTGCCACCGCCGG+TGG | + | chr6.3:37785099-37785118 | None:intergenic | 70.0% | |
| AGGCTTGCCACCGCCGGTGG+AGG | + | chr6.3:37785096-37785115 | None:intergenic | 75.0% | |
| ! | TCTGGCTCCTCCACCGGCGG+TGG | - | chr6.3:37785086-37785105 | MS.gene80479:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 37783987 | 37785363 | 37783987 | ID=MS.gene80479 |
| chr6.3 | mRNA | 37783987 | 37785363 | 37783987 | ID=MS.gene80479.t1;Parent=MS.gene80479 |
| chr6.3 | exon | 37785297 | 37785363 | 37785297 | ID=MS.gene80479.t1.exon1;Parent=MS.gene80479.t1 |
| chr6.3 | CDS | 37785297 | 37785363 | 37785297 | ID=cds.MS.gene80479.t1;Parent=MS.gene80479.t1 |
| chr6.3 | exon | 37784834 | 37784963 | 37784834 | ID=MS.gene80479.t1.exon2;Parent=MS.gene80479.t1 |
| chr6.3 | CDS | 37784834 | 37784963 | 37784834 | ID=cds.MS.gene80479.t1;Parent=MS.gene80479.t1 |
| chr6.3 | exon | 37784546 | 37784715 | 37784546 | ID=MS.gene80479.t1.exon3;Parent=MS.gene80479.t1 |
| chr6.3 | CDS | 37784546 | 37784715 | 37784546 | ID=cds.MS.gene80479.t1;Parent=MS.gene80479.t1 |
| chr6.3 | exon | 37784207 | 37784395 | 37784207 | ID=MS.gene80479.t1.exon4;Parent=MS.gene80479.t1 |
| chr6.3 | CDS | 37784207 | 37784395 | 37784207 | ID=cds.MS.gene80479.t1;Parent=MS.gene80479.t1 |
| chr6.3 | exon | 37783987 | 37784081 | 37783987 | ID=MS.gene80479.t1.exon5;Parent=MS.gene80479.t1 |
| chr6.3 | CDS | 37783987 | 37784081 | 37783987 | ID=cds.MS.gene80479.t1;Parent=MS.gene80479.t1 |
| Gene Sequence |
| Protein sequence |
