AlfalfaGEDB | MS.gene049634

M. sativa cultivar XinJiangDaYe / MS.gene049634

KEGG: -
GO: -
PFAM: PF03168.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049634.t1	XP_013460530.1	96.8	252	8	0	1	252	1	252	2.30E-119	438.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049634.t1	Q8LD98	58.0	255	100	3	2	252	1	252	1.1e-61	238.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049634.t1	I3T2S7	96.8	252	8	0	1	252	1	252	1.7e-119	438.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049217	MS.gene049634	-0.821058	4.94E-53	-1.69E-46
MS.gene049222	MS.gene049634	-0.813057	3.10E-51	-1.69E-46
MS.gene049259	MS.gene049634	0.815771	7.79E-52	-1.69E-46
MS.gene049320	MS.gene049634	-0.815551	8.73E-52	-1.69E-46
MS.gene049549	MS.gene049634	0.804438	2.16E-49	-1.69E-46
MS.gene049611	MS.gene049634	0.846226	2.48E-59	-1.69E-46
MS.gene049634	MS.gene050095	0.817916	2.57E-52	-1.69E-46
MS.gene049634	MS.gene050163	-0.810218	1.29E-50	-1.69E-46
MS.gene049634	MS.gene050165	-0.813088	3.06E-51	-1.69E-46
MS.gene049634	MS.gene050173	0.805236	1.47E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049634.t1	MTR_3g063310	96.429	252	9	0	1	252	1	252	0.0	506
MS.gene049634.t1	MTR_5g076170	61.597	263	89	3	2	252	1	263	5.76e-98	287
MS.gene049634.t1	MTR_1g077560	49.606	254	121	5	2	252	1	250	1.38e-69	214
MS.gene049634.t1	MTR_5g087760	35.648	216	132	4	40	252	43	254	9.44e-36	128
MS.gene049634.t1	MTR_3g078800	38.798	183	105	3	72	250	73	252	1.34e-33	122
MS.gene049634.t1	MTR_2g012550	33.824	204	120	6	55	252	70	264	9.17e-29	110
MS.gene049634.t1	MTR_2g011350	34.437	151	92	3	80	227	35	181	8.66e-24	95.5
MS.gene049634.t1	MTR_3g104460	31.343	201	125	6	61	252	57	253	4.30e-22	92.0
MS.gene049634.t1	MTR_3g078820	30.583	206	129	5	46	246	4	200	1.91e-21	89.4
MS.gene049634.t1	MTR_2g100060	30.233	172	113	4	81	247	77	246	4.68e-21	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049634.t1	AT1G65690	57.647	255	101	3	2	252	1	252	3.33e-96	282
MS.gene049634.t1	AT5G36970	51.394	251	119	1	2	252	1	248	4.88e-85	254
MS.gene049634.t1	AT1G54540	42.629	251	132	2	2	252	1	239	1.13e-58	186
MS.gene049634.t1	AT2G27080	35.165	182	112	3	59	239	72	248	1.95e-34	124
MS.gene049634.t1	AT2G27080	35.165	182	112	3	59	239	72	248	1.95e-34	124
MS.gene049634.t1	AT2G35980	35.233	193	110	6	40	227	18	200	6.76e-24	96.3
MS.gene049634.t1	AT3G11650	29.167	216	133	6	36	237	14	223	3.29e-23	94.7
MS.gene049634.t1	AT5G06320	32.212	208	121	7	36	230	10	210	8.43e-23	93.6
MS.gene049634.t1	AT5G21130	26.396	197	143	1	56	252	86	280	3.51e-22	92.8
MS.gene049634.t1	AT2G35460	27.950	161	113	3	72	230	57	216	3.86e-17	78.6

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Find 58 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAACAGGACTGTGTGA+AGG	0.583033	3.2:+59270896	MS.gene049634:CDS
AACAAAGAGACTGTTGTCGT+CGG	0.621599	3.2:-59270786	None:intergenic
AAGAAACAGGACTGTGTGAA+GGG	0.543431	3.2:+59270897	MS.gene049634:CDS
AAGAATCAGCAATATGGTGA+AGG	0.607184	3.2:-59270660	None:intergenic
AAGTGGCGTTTCGGAAGAGG+TGG	0.610030	3.2:-59270572	None:intergenic
AATTATAAGAATCAGCAATA+TGG	0.406684	3.2:-59270666	None:intergenic
AATTCACCCTGCTAATGATT+TGG	0.334946	3.2:+59270475	MS.gene049634:CDS
ACGGAGTATTTGGGAAGCTT+TGG	0.388916	3.2:-59270731	None:intergenic
AGAAAAGAAGTTGCTGCTGC+AGG	0.502944	3.2:+59270624	MS.gene049634:CDS
AGAAACCCAAACAAGAAAAT+TGG	0.271660	3.2:+59270833	MS.gene049634:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAACCCAAACAAGAAAAT+TGG	+	chr3.2:59270833-59270852	MS.gene049634:CDS	30.0%
CTGCAACGTATTAAATAAAC+CGG	-	chr3.2:59271002-59271021	None:intergenic	30.0%
TAAGGTTAATCAGAATGTGA+GGG	+	chr3.2:59271060-59271079	MS.gene049634:CDS	30.0%
TAATATCATTATCAGCACCA+AGG	-	chr3.2:59271153-59271172	None:intergenic	30.0%
TGTTATTCTTAGTCTGTCTA+CGG	-	chr3.2:59270753-59270772	None:intergenic	30.0%
TTAAGGTTAATCAGAATGTG+AGG	+	chr3.2:59271059-59271078	MS.gene049634:CDS	30.0%
AAGAATCAGCAATATGGTGA+AGG	-	chr3.2:59270663-59270682	None:intergenic	35.0%
AATTCACCCTGCTAATGATT+TGG	+	chr3.2:59270475-59270494	MS.gene049634:CDS	35.0%
AGTGCTTGGTATAAAGAAAC+AGG	+	chr3.2:59270884-59270903	MS.gene049634:CDS	35.0%
CAGATAGTAGATGTAAGTTC+AGG	+	chr3.2:59271179-59271198	MS.gene049634:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	59270455	59271213	59270455	ID=MS.gene049634
chr3.2	mRNA	59270455	59271213	59270455	ID=MS.gene049634.t1;Parent=MS.gene049634
chr3.2	exon	59270455	59271213	59270455	ID=MS.gene049634.t1.exon1;Parent=MS.gene049634.t1
chr3.2	CDS	59270455	59271213	59270455	ID=cds.MS.gene049634.t1;Parent=MS.gene049634.t1

Gene Sequence

>MS.gene049634

ATGATGACAGATCATCAGAGAATTCACCCTGCTAATGATTTGGAGGCACAAAACAAACCTACAGCTCCTTTGTTTCCTCGAAACACTTCAAAATCCGATCGACGCAGTCCTTCACATCCACCTCTTCCGAAACGCCACTTTCCAGTGAGGCACACTCATCCACCAAAGAAGAAAAGAAGTTGCTGCTGCAGGTTCTTGTGTTGTACCTTCACCATATTGCTGATTCTTATAATTGCAATTGGCATCACTGTTGGGGCACTCTACCTTGCTTTTAGGCCAAAGCTTCCCAAATACTCCGTAGACAGACTAAGAATAACACAGTTCAATCTTTCCGACGACAACAGTCTCTTTGTTACCTTCAATGTAACAGTAACTGCAAGAAACCCAAACAAGAAAATTGGAATATACTATGTAAGTGGAAGTCATGTAAGTGCTTGGTATAAAGAAACAGGACTGTGTGAAGGGTCTCTGCCGAAATTCTATCAGGGTCATCGGAATACAACCGTGCTTAATCTGCCTTTAACAGGTCAAACACAGGATGCAACCGGTTTATTTAATACGTTGCAGCAGCAGCTTCAAGAAGCAGGTAATATACCACTTGATATTAAGGTTAATCAGAATGTGAGGGTTAAGCTTGGTAAGTTGAAGATCTTTAGAGTCAAGTTTCGTGTTAGGTGCAGCCTTAAGGTGGATAGCCTTGGTGCTGATAATGATATTAGCATTTCAGATAGTAGATGTAAGTTCAGGCTCAGGCTATGA

Protein sequence

>MS.gene049634.t1

MMTDHQRIHPANDLEAQNKPTAPLFPRNTSKSDRRSPSHPPLPKRHFPVRHTHPPKKKRSCCCRFLCCTFTILLILIIAIGITVGALYLAFRPKLPKYSVDRLRITQFNLSDDNSLFVTFNVTVTARNPNKKIGIYYVSGSHVSAWYKETGLCEGSLPKFYQGHRNTTVLNLPLTGQTQDATGLFNTLQQQLQEAGNIPLDIKVNQNVRVKLGKLKIFRVKFRVRCSLKVDSLGADNDISISDSRCKFRLRL