Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80894.t1 | BBG97541.1 | 82.4 | 335 | 53 | 1 | 1 | 329 | 546 | 880 | 3.30E-135 | 491.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80894.t1 | P10978 | 29.8 | 339 | 215 | 7 | 7 | 329 | 5 | 336 | 2.0e-35 | 151.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80894.t1 | A0A4Y1RCM7 | 82.4 | 335 | 53 | 1 | 1 | 329 | 1 | 335 | 2.4e-135 | 491.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene80894 | 0.810873 | 9.28E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene80894 | 0.805038 | 1.62E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene80894 | 0.80353 | 3.34E-49 | -1.69E-46 |
| MS.gene052735 | MS.gene80894 | 0.81414 | 1.79E-51 | -1.69E-46 |
| MS.gene052736 | MS.gene80894 | 0.809669 | 1.69E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene80894 | 0.800235 | 1.58E-48 | -1.69E-46 |
| MS.gene05615 | MS.gene80894 | 0.82767 | 1.38E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene80894 | 0.815862 | 7.44E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80894.t1 | MTR_2g039140 | 44.444 | 153 | 53 | 1 | 31 | 183 | 151 | 271 | 4.91e-32 | 121 |
| MS.gene80894.t1 | MTR_4g036430 | 87.179 | 39 | 5 | 0 | 1 | 39 | 31 | 69 | 2.27e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80894.t1 | AT3G29785 | 57.778 | 90 | 37 | 1 | 11 | 100 | 7 | 95 | 8.31e-31 | 113 |
Find 81 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATACCAACTGAACTTAAT+TGG | 0.095422 | 6.3:+14932185 | None:intergenic |
| AATTCTTGAAGATTTCTTTC+TGG | 0.174999 | 6.3:+14931675 | None:intergenic |
| TTGAGAACTACGATGATTTC+TGG | 0.192955 | 6.3:+14931901 | None:intergenic |
| TCATCATCCTTCATCGATTC+TGG | 0.247368 | 6.3:+14932445 | None:intergenic |
| TTCGCCTCTTGATTCTTTGC+CGG | 0.288847 | 6.3:+14931812 | None:intergenic |
| ACTACGATGATTTCTGGATT+TGG | 0.314338 | 6.3:+14931907 | None:intergenic |
| TGACGCGTTGATATGTTCTT+TGG | 0.328692 | 6.3:-14931753 | MS.gene80894:CDS |
| CTCTGGTCTCTTACTCTAAC+AGG | 0.343603 | 6.3:+14930175 | None:intergenic |
| ATTCTTGAAGATTTCTTTCT+GGG | 0.357883 | 6.3:+14931676 | None:intergenic |
| ATGGTGCGGACTTTGGCTTT+TGG | 0.377376 | 6.3:-14932531 | MS.gene80894:CDS |
| GATACCAACTGAACTTAATT+GGG | 0.381678 | 6.3:+14932186 | None:intergenic |
| TCGCCTCTTGATTCTTTGCC+GGG | 0.387660 | 6.3:+14931813 | None:intergenic |
| ATTTCTGGATTTGGATCGTC+TGG | 0.389287 | 6.3:+14931916 | None:intergenic |
| TGTCTTCCCTACCAGATAGT+TGG | 0.404400 | 6.3:-14932129 | MS.gene80894:CDS |
| ACAGTAGCGCTCCAACTATC+TGG | 0.408688 | 6.3:+14932118 | None:intergenic |
| AGAAATTCAACCAGAGGAAA+TGG | 0.417568 | 6.3:-14931956 | MS.gene80894:CDS |
| TGGAAATGAACAATCTTGTA+AGG | 0.417574 | 6.3:-14931621 | MS.gene80894:CDS |
| ATCTTCAAGAATTATGTTCC+TGG | 0.432675 | 6.3:-14931665 | MS.gene80894:CDS |
| ATTTGATGATGTTCGTGATC+TGG | 0.433721 | 6.3:-14932056 | MS.gene80894:CDS |
| TGAACAATCTTGTAAGGTTG+TGG | 0.438789 | 6.3:-14931615 | MS.gene80894:CDS |
| GAGATCCGACGGAGAGAGTT+GGG | 0.442215 | 6.3:-14932022 | MS.gene80894:CDS |
| GCAAATGTTGCTTCCACCTC+AGG | 0.445655 | 6.3:-14931782 | MS.gene80894:CDS |
| GGAGAGCAAGGAAGAGTCTT+GGG | 0.448480 | 6.3:-14931732 | MS.gene80894:CDS |
| AAGTTCGATGGTGCGGACTT+TGG | 0.452497 | 6.3:-14932538 | MS.gene80894:CDS |
| ACCTTTGTTAACATATCTGC+AGG | 0.453202 | 6.3:+14930240 | None:intergenic |
| TGAACTTTATTTGATGCTGA+AGG | 0.474628 | 6.3:+14932292 | None:intergenic |
| TACAAGATTGTTCATTTCCA+AGG | 0.487050 | 6.3:+14931624 | None:intergenic |
| TTTACCACGTCCATTTCCTC+TGG | 0.487326 | 6.3:+14931946 | None:intergenic |
| AACCTTGGTAAAGTTTACCT+TGG | 0.487612 | 6.3:-14931641 | MS.gene80894:CDS |
| GAACAATCTTGTAAGGTTGT+GGG | 0.497160 | 6.3:-14931614 | MS.gene80894:CDS |
| TGGAGAGCAAGGAAGAGTCT+TGG | 0.501744 | 6.3:-14931733 | MS.gene80894:CDS |
| AATTATGTTCCTGGTAACCT+TGG | 0.511199 | 6.3:-14931656 | MS.gene80894:CDS |
| TCTATCGAGTGTTGGAATTG+TGG | 0.512167 | 6.3:-14931869 | MS.gene80894:CDS |
| CGCGTCACCTCCTCCTGAGG+TGG | 0.515832 | 6.3:+14931769 | None:intergenic |
| GAGTCTTGGGTGTTAGACTC+TGG | 0.518950 | 6.3:-14931719 | MS.gene80894:CDS |
| CACAGCTGTGAGTAGCTCCT+CGG | 0.527844 | 6.3:-14932095 | MS.gene80894:CDS |
| ACAGCTGTGAGTAGCTCCTC+GGG | 0.532462 | 6.3:-14932094 | MS.gene80894:CDS |
| TAGCGCTCCAACTATCTGGT+AGG | 0.539026 | 6.3:+14932122 | None:intergenic |
| AAAGAAACCAGAATCGATGA+AGG | 0.539324 | 6.3:-14932452 | MS.gene80894:CDS |
| TGTTGGAATTGTGGAAAGAC+GGG | 0.540082 | 6.3:-14931860 | MS.gene80894:CDS |
| TAAACTTTACCAAGGTTACC+AGG | 0.541196 | 6.3:+14931647 | None:intergenic |
| AGAGATCCGACGGAGAGAGT+TGG | 0.549236 | 6.3:-14932023 | MS.gene80894:CDS |
| CAAATAAAGTTCATTTGATG+AGG | 0.550433 | 6.3:-14932282 | MS.gene80894:CDS |
| ACTCGAAATCTATCGAGTGT+TGG | 0.550555 | 6.3:-14931877 | MS.gene80894:CDS |
| TCTTGTAAGGTTGTGGGCAA+AGG | 0.550702 | 6.3:-14931608 | MS.gene80894:intron |
| AACCACCGCTGGTCTTATGA+AGG | 0.557775 | 6.3:-14932338 | MS.gene80894:CDS |
| GTGAAAATTGAAAAGTTCGA+TGG | 0.563926 | 6.3:-14932550 | MS.gene80894:CDS |
| GTGTTGGAATTGTGGAAAGA+CGG | 0.567490 | 6.3:-14931861 | MS.gene80894:CDS |
| CTCTGTATGCAATACTGAAG+AGG | 0.567853 | 6.3:+14931988 | None:intergenic |
| ACAACCCAATTAAGTTCAGT+TGG | 0.568124 | 6.3:-14932190 | MS.gene80894:CDS |
| AAGTTGTGCTCAACTTCAGT+TGG | 0.568559 | 6.3:-14930198 | MS.gene80894:CDS |
| GTTGCTTCCACCTCAGGAGG+AGG | 0.568689 | 6.3:-14931776 | MS.gene80894:CDS |
| TTTACACTTCGGATGACAGA+AGG | 0.576141 | 6.3:-14932253 | MS.gene80894:CDS |
| TGCAGATATGTTAACAAAGG+TGG | 0.579513 | 6.3:-14930238 | MS.gene80894:CDS |
| GATGACAGAAGGCGCATCAG+TGG | 0.593273 | 6.3:-14932242 | MS.gene80894:CDS |
| AGCGCTCCAACTATCTGGTA+GGG | 0.594325 | 6.3:+14932123 | None:intergenic |
| AAATGGACGTGGTAAATCAA+AGG | 0.596335 | 6.3:-14931939 | MS.gene80894:CDS |
| TTCTCAGTGAAGAGATCCGA+CGG | 0.596721 | 6.3:-14932033 | MS.gene80894:CDS |
| TGAGGCGGTTGTTTACACTT+CGG | 0.598027 | 6.3:-14932264 | MS.gene80894:CDS |
| GATATGTTCTTTGGAGAGCA+AGG | 0.598084 | 6.3:-14931744 | MS.gene80894:CDS |
| ATAAAGTTCATTTGATGAGG+CGG | 0.598437 | 6.3:-14932279 | MS.gene80894:CDS |
| CTTCTCGATAGACAAGCACT+TGG | 0.601850 | 6.3:-14932415 | MS.gene80894:CDS |
| CATGGTTGCAGACGAAGGAA+AGG | 0.603913 | 6.3:-14932572 | MS.gene80894:CDS |
| AATGTTGCTTCCACCTCAGG+AGG | 0.603928 | 6.3:-14931779 | MS.gene80894:CDS |
| AATCGATGAAGGATGATGAG+TGG | 0.606445 | 6.3:-14932441 | MS.gene80894:CDS |
| AATTGAAAAGTTCGATGGTG+CGG | 0.608192 | 6.3:-14932545 | MS.gene80894:CDS |
| CAAGTGCTTGTCTATCGAGA+AGG | 0.612004 | 6.3:+14932416 | None:intergenic |
| TTCCAAGGTAAACTTTACCA+AGG | 0.615217 | 6.3:+14931639 | None:intergenic |
| AGCCTTCATAAGACCAGCGG+TGG | 0.620835 | 6.3:+14932336 | None:intergenic |
| GAATCAAGAGGCGAAAGATG+AGG | 0.623736 | 6.3:-14931804 | MS.gene80894:CDS |
| GCAAAAGAGAAAACCACCGC+TGG | 0.626545 | 6.3:-14932349 | MS.gene80894:CDS |
| GGAGTCATGGTTGCAGACGA+AGG | 0.628542 | 6.3:-14932577 | None:intergenic |
| TCCTGCAGATATGTTAACAA+AGG | 0.629429 | 6.3:-14930241 | MS.gene80894:CDS |
| CAACGCGTCACCTCCTCCTG+AGG | 0.630580 | 6.3:+14931766 | None:intergenic |
| TGGTATCGAATTTGACGATG+AGG | 0.639552 | 6.3:-14932170 | MS.gene80894:CDS |
| ATTCACCCAACTCTCTCCGT+CGG | 0.641975 | 6.3:+14932017 | None:intergenic |
| AGAGGAAGAAATTCAACCAG+AGG | 0.643795 | 6.3:-14931962 | MS.gene80894:CDS |
| TCAACCAGAGGAAATGGACG+TGG | 0.665050 | 6.3:-14931950 | MS.gene80894:CDS |
| GTATTGCATACAGAGTCAAG+AGG | 0.682691 | 6.3:-14931980 | MS.gene80894:CDS |
| GCTCCCGGCAAAGAATCAAG+AGG | 0.684015 | 6.3:-14931816 | MS.gene80894:CDS |
| AAGAGCCTTCATAAGACCAG+CGG | 0.707222 | 6.3:+14932333 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTAAGATTAAGTTGAAT+GGG | - | chr6.3:14931173-14931192 | MS.gene80894:intron | 20.0% |
| !!! | CTAACATTGATTAAAATTCA+AGG | - | chr6.3:14932483-14932502 | MS.gene80894:CDS | 20.0% |
| ! | AATTCTTGAAGATTTCTTTC+TGG | + | chr6.3:14931084-14931103 | None:intergenic | 25.0% |
| ! | ATTCTTGAAGATTTCTTTCT+GGG | + | chr6.3:14931083-14931102 | None:intergenic | 25.0% |
| ! | CAAATAAAGTTCATTTGATG+AGG | - | chr6.3:14930474-14930493 | MS.gene80894:intron | 25.0% |
| ! | CAAATGAAAATCCTAATCTA+TGG | - | chr6.3:14931404-14931423 | MS.gene80894:intron | 25.0% |
| !!! | GAAGTTAAGATTAAGTTGAA+TGG | - | chr6.3:14931172-14931191 | MS.gene80894:intron | 25.0% |
| AAGGAAAACTACCAAATCTT+CGG | - | chr6.3:14931479-14931498 | MS.gene80894:intron | 30.0% | |
| ATAAAATACCAGAAGAGGTA+TGG | - | chr6.3:14932046-14932065 | MS.gene80894:CDS | 30.0% | |
| ATAAAGTTCATTTGATGAGG+CGG | - | chr6.3:14930477-14930496 | MS.gene80894:intron | 30.0% | |
| ATATGTGAAGACTGTATACT+TGG | - | chr6.3:14931517-14931536 | MS.gene80894:intron | 30.0% | |
| ATCTTCAAGAATTATGTTCC+TGG | - | chr6.3:14931091-14931110 | MS.gene80894:intron | 30.0% | |
| ATTTCTATTGACCGAAGATT+TGG | + | chr6.3:14931493-14931512 | None:intergenic | 30.0% | |
| GATACCAACTGAACTTAATT+GGG | + | chr6.3:14930573-14930592 | None:intergenic | 30.0% | |
| GATGATTGGAAGATTTCAAA+AGG | - | chr6.3:14931301-14931320 | MS.gene80894:intron | 30.0% | |
| GGATGATGAAAACAAAAAGA+TGG | - | chr6.3:14932221-14932240 | MS.gene80894:CDS | 30.0% | |
| GTAGCAAAACTTCTTGAATT+TGG | + | chr6.3:14931830-14931849 | None:intergenic | 30.0% | |
| GTGAAAATTGAAAAGTTCGA+TGG | - | chr6.3:14930206-14930225 | MS.gene80894:CDS | 30.0% | |
| TACAAGATTGTTCATTTCCA+AGG | + | chr6.3:14931135-14931154 | None:intergenic | 30.0% | |
| TGGAAATGAACAATCTTGTA+AGG | - | chr6.3:14931135-14931154 | MS.gene80894:intron | 30.0% | |
| ! | GACACTTTAAAAATCAGTGT+AGG | - | chr6.3:14930918-14930937 | MS.gene80894:intron | 30.0% |
| ! | TATTTGAAGCTTTCAAGAGA+TGG | - | chr6.3:14931728-14931747 | MS.gene80894:CDS | 30.0% |
| ! | TGAACTTTATTTGATGCTGA+AGG | + | chr6.3:14930467-14930486 | None:intergenic | 30.0% |
| AAAGAAACCAGAATCGATGA+AGG | - | chr6.3:14930304-14930323 | MS.gene80894:intron | 35.0% | |
| AAAGAGTGATGTACAAAGAC+AGG | - | chr6.3:14932271-14932290 | MS.gene80894:CDS | 35.0% | |
| AAAGTGCACTTCTTGGATTT+GGG | + | chr6.3:14932162-14932181 | None:intergenic | 35.0% | |
| AAATGGACGTGGTAAATCAA+AGG | - | chr6.3:14930817-14930836 | MS.gene80894:intron | 35.0% | |
| AACCTTGGTAAAGTTTACCT+TGG | - | chr6.3:14931115-14931134 | MS.gene80894:intron | 35.0% | |
| AATCTATGGCACAAGAGATT+AGG | - | chr6.3:14931418-14931437 | MS.gene80894:intron | 35.0% | |
| AATCTCTTGTGCCATAGATT+AGG | + | chr6.3:14931418-14931437 | None:intergenic | 35.0% | |
| AATTATGTTCCTGGTAACCT+TGG | - | chr6.3:14931100-14931119 | MS.gene80894:intron | 35.0% | |
| AATTGAAAAGTTCGATGGTG+CGG | - | chr6.3:14930211-14930230 | MS.gene80894:CDS | 35.0% | |
| ACAACCCAATTAAGTTCAGT+TGG | - | chr6.3:14930566-14930585 | MS.gene80894:intron | 35.0% | |
| ACCTTTGTTAACATATCTGC+AGG | + | chr6.3:14932519-14932538 | None:intergenic | 35.0% | |
| ACGAAAAACTTAATCTCCGT+AGG | - | chr6.3:14931238-14931257 | MS.gene80894:intron | 35.0% | |
| AGAAATTCAACCAGAGGAAA+TGG | - | chr6.3:14930800-14930819 | MS.gene80894:intron | 35.0% | |
| ATGAAGGTTATGCACTCAAA+AGG | - | chr6.3:14931460-14931479 | MS.gene80894:intron | 35.0% | |
| ATTAGGCCATATGAGTGAAA+AGG | - | chr6.3:14931435-14931454 | MS.gene80894:intron | 35.0% | |
| CGATACCAACTGAACTTAAT+TGG | + | chr6.3:14930574-14930593 | None:intergenic | 35.0% | |
| CTTCATTAGATCTCTTCTTG+AGG | - | chr6.3:14932452-14932471 | MS.gene80894:CDS | 35.0% | |
| GAACAATCTTGTAAGGTTGT+GGG | - | chr6.3:14931142-14931161 | MS.gene80894:intron | 35.0% | |
| TAAACTTTACCAAGGTTACC+AGG | + | chr6.3:14931112-14931131 | None:intergenic | 35.0% | |
| TATGTGCACATTAGTGATCA+AGG | - | chr6.3:14932120-14932139 | MS.gene80894:CDS | 35.0% | |
| TCAACTTACTTAATCAACCG+AGG | - | chr6.3:14932003-14932022 | MS.gene80894:CDS | 35.0% | |
| TCCTGCAGATATGTTAACAA+AGG | - | chr6.3:14932515-14932534 | MS.gene80894:CDS | 35.0% | |
| TGAACAATCTTGTAAGGTTG+TGG | - | chr6.3:14931141-14931160 | MS.gene80894:intron | 35.0% | |
| TGCAGATATGTTAACAAAGG+TGG | - | chr6.3:14932518-14932537 | MS.gene80894:CDS | 35.0% | |
| TTAGGCCATATGAGTGAAAA+GGG | - | chr6.3:14931436-14931455 | MS.gene80894:intron | 35.0% | |
| TTCATATTCACCACCATTGT+CGG | + | chr6.3:14931803-14931822 | None:intergenic | 35.0% | |
| TTCCAAGGTAAACTTTACCA+AGG | + | chr6.3:14931120-14931139 | None:intergenic | 35.0% | |
| TTGAGAACTACGATGATTTC+TGG | + | chr6.3:14930858-14930877 | None:intergenic | 35.0% | |
| TTGTTGCAACTGCAATCAAA+TGG | + | chr6.3:14931387-14931406 | None:intergenic | 35.0% | |
| ! | AAGTGCACTTTCATTGGTTA+TGG | - | chr6.3:14932171-14932190 | MS.gene80894:CDS | 35.0% |
| ! | ACTACGATGATTTCTGGATT+TGG | + | chr6.3:14930852-14930871 | None:intergenic | 35.0% |
| ! | ATTAAGTTTTTCGTGAGGTC+GGG | + | chr6.3:14931232-14931251 | None:intergenic | 35.0% |
| ! | CTCTCACATCTTAGAGTTTT+TGG | - | chr6.3:14932087-14932106 | MS.gene80894:CDS | 35.0% |
| ! | CTTTTATCGATGATCACTCT+AGG | - | chr6.3:14931668-14931687 | MS.gene80894:CDS | 35.0% |
| ! | GATTAAGTTTTTCGTGAGGT+CGG | + | chr6.3:14931233-14931252 | None:intergenic | 35.0% |
| ! | TAAGTTGAATGGGTCTGTAT+GGG | - | chr6.3:14931183-14931202 | MS.gene80894:intron | 35.0% |
| ! | TCTGGTATTTTATGCTCCAA+TGG | + | chr6.3:14932039-14932058 | None:intergenic | 35.0% |
| !! | ATTTGATGATGTTCGTGATC+TGG | - | chr6.3:14930700-14930719 | MS.gene80894:intron | 35.0% |
| !! | TTAAGTTGAATGGGTCTGTA+TGG | - | chr6.3:14931182-14931201 | MS.gene80894:intron | 35.0% |
| !!! | TTTTGTTTTCATCATCCCAG+AGG | + | chr6.3:14932218-14932237 | None:intergenic | 35.0% |
| AAAAAGCTCAGAACCGACAA+TGG | - | chr6.3:14931787-14931806 | MS.gene80894:CDS | 40.0% | |
| AAATCTTCCAATCATCACCG+TGG | + | chr6.3:14931297-14931316 | None:intergenic | 40.0% | |
| AAGTTGTGCTCAACTTCAGT+TGG | - | chr6.3:14932558-14932577 | MS.gene80894:CDS | 40.0% | |
| AATCGATGAAGGATGATGAG+TGG | - | chr6.3:14930315-14930334 | MS.gene80894:intron | 40.0% | |
| ACTCGAAATCTATCGAGTGT+TGG | - | chr6.3:14930879-14930898 | MS.gene80894:intron | 40.0% | |
| AGAGGAAGAAATTCAACCAG+AGG | - | chr6.3:14930794-14930813 | MS.gene80894:intron | 40.0% | |
| AGCTCAAGTTTCTCCTTCTT+TGG | + | chr6.3:14931583-14931602 | None:intergenic | 40.0% | |
| AGGCTTACCAAAGAACTTCT+GGG | - | chr6.3:14931963-14931982 | MS.gene80894:CDS | 40.0% | |
| CATTCGAGAACAAAGCACAT+AGG | - | chr6.3:14932417-14932436 | MS.gene80894:CDS | 40.0% | |
| CTCAAGTTTCTCCTTCTTTG+GGG | + | chr6.3:14931581-14931600 | None:intergenic | 40.0% | |
| CTCTGTATGCAATACTGAAG+AGG | + | chr6.3:14930771-14930790 | None:intergenic | 40.0% | |
| CTTGTTCACTCTGATGTTTG+GGG | - | chr6.3:14931601-14931620 | MS.gene80894:intron | 40.0% | |
| CTTTGCCAAATCTTCTGACT+GGG | + | chr6.3:14932385-14932404 | None:intergenic | 40.0% | |
| GCTCAAGTTTCTCCTTCTTT+GGG | + | chr6.3:14931582-14931601 | None:intergenic | 40.0% | |
| GCTTGTTCACTCTGATGTTT+GGG | - | chr6.3:14931600-14931619 | MS.gene80894:intron | 40.0% | |
| GGAGCATAAAATACCAGAAG+AGG | - | chr6.3:14932041-14932060 | MS.gene80894:CDS | 40.0% | |
| GGTTATGGTGAAGATGAGTT+TGG | - | chr6.3:14932186-14932205 | MS.gene80894:CDS | 40.0% | |
| GTATTGCATACAGAGTCAAG+AGG | - | chr6.3:14930776-14930795 | MS.gene80894:intron | 40.0% | |
| GTGTTGGAATTGTGGAAAGA+CGG | - | chr6.3:14930895-14930914 | MS.gene80894:intron | 40.0% | |
| TAAAAATCAGTGTAGGCTCC+CGG | - | chr6.3:14930925-14930944 | MS.gene80894:intron | 40.0% | |
| TAGATCTCTTCTTGAGGATG+AGG | - | chr6.3:14932458-14932477 | MS.gene80894:CDS | 40.0% | |
| TAGGCCATATGAGTGAAAAG+GGG | - | chr6.3:14931437-14931456 | MS.gene80894:intron | 40.0% | |
| TATGAGTGAAAAGGGGATGA+AGG | - | chr6.3:14931444-14931463 | MS.gene80894:intron | 40.0% | |
| TCGTCCATCTCTACATAAAC+AGG | + | chr6.3:14932333-14932352 | None:intergenic | 40.0% | |
| TCTTTGCCAAATCTTCTGAC+TGG | + | chr6.3:14932386-14932405 | None:intergenic | 40.0% | |
| TGTTGGAATTGTGGAAAGAC+GGG | - | chr6.3:14930896-14930915 | MS.gene80894:intron | 40.0% | |
| TTTACACTTCGGATGACAGA+AGG | - | chr6.3:14930503-14930522 | MS.gene80894:intron | 40.0% | |
| TTTCAAGAGATGGAAAGCCA+TGG | - | chr6.3:14931738-14931757 | MS.gene80894:CDS | 40.0% | |
| TTTGCCAAATCTTCTGACTG+GGG | + | chr6.3:14932384-14932403 | None:intergenic | 40.0% | |
| ! | AAGAAGTTTTGCTACGAGCA+CGG | - | chr6.3:14931835-14931854 | MS.gene80894:CDS | 40.0% |
| ! | ACCAATGAAAGTGCACTTCT+TGG | + | chr6.3:14932169-14932188 | None:intergenic | 40.0% |
| ! | ACTTGTCTCATTTTCCACCA+TGG | + | chr6.3:14931758-14931777 | None:intergenic | 40.0% |
| ! | AGCTTGTTCACTCTGATGTT+TGG | - | chr6.3:14931599-14931618 | MS.gene80894:intron | 40.0% |
| ! | ATGATCACTCTAGGAAGGTA+TGG | - | chr6.3:14931677-14931696 | MS.gene80894:CDS | 40.0% |
| ! | ATTTCTGGATTTGGATCGTC+TGG | + | chr6.3:14930843-14930862 | None:intergenic | 40.0% |
| ! | CGGAGATTAAGTTTTTCGTG+AGG | + | chr6.3:14931237-14931256 | None:intergenic | 40.0% |
| ! | GAAAGTGCACTTCTTGGATT+TGG | + | chr6.3:14932163-14932182 | None:intergenic | 40.0% |
| ! | GATATGTTCTTTGGAGAGCA+AGG | - | chr6.3:14931012-14931031 | MS.gene80894:intron | 40.0% |
| ! | TATCGATGATCACTCTAGGA+AGG | - | chr6.3:14931672-14931691 | MS.gene80894:CDS | 40.0% |
| ! | TCATCCCCTTTTCACTCATA+TGG | + | chr6.3:14931444-14931463 | None:intergenic | 40.0% |
| ! | TCCAAGAAGTGCACTTTCAT+TGG | - | chr6.3:14932165-14932184 | MS.gene80894:CDS | 40.0% |
| ! | TGACGCGTTGATATGTTCTT+TGG | - | chr6.3:14931003-14931022 | MS.gene80894:intron | 40.0% |
| ! | TGATCACTCTAGGAAGGTAT+GGG | - | chr6.3:14931678-14931697 | MS.gene80894:CDS | 40.0% |
| ! | TGGTATCGAATTTGACGATG+AGG | - | chr6.3:14930586-14930605 | MS.gene80894:intron | 40.0% |
| ! | TTTCATCTTTTTGCTTCCCG+AGG | + | chr6.3:14930681-14930700 | None:intergenic | 40.0% |
| !! | TCATCATCCTTCATCGATTC+TGG | + | chr6.3:14930314-14930333 | None:intergenic | 40.0% |
| !! | TCTATCGAGTGTTGGAATTG+TGG | - | chr6.3:14930887-14930906 | MS.gene80894:intron | 40.0% |
| !! | TCTGGTTTCTTTTCTGTGAG+AGG | + | chr6.3:14930296-14930315 | None:intergenic | 40.0% |
| AAGAGCCTTCATAAGACCAG+CGG | + | chr6.3:14930426-14930445 | None:intergenic | 45.0% | |
| AAGTGGAAGAACCCCAAAGA+AGG | - | chr6.3:14931567-14931586 | MS.gene80894:intron | 45.0% | |
| ACAACTGTCTCATCCATTGG+TGG | - | chr6.3:14931628-14931647 | MS.gene80894:CDS | 45.0% | |
| AGAGTCAGCTTTCAGACAAG+TGG | - | chr6.3:14931550-14931569 | MS.gene80894:intron | 45.0% | |
| ATAGCTCGCGGTAAAAAGAG+TGG | - | chr6.3:14931334-14931353 | MS.gene80894:intron | 45.0% | |
| CAACTGTCTCATCCATTGGT+GGG | - | chr6.3:14931629-14931648 | MS.gene80894:CDS | 45.0% | |
| CAAGTGCTTGTCTATCGAGA+AGG | + | chr6.3:14930343-14930362 | None:intergenic | 45.0% | |
| CAGGCTTACCAAAGAACTTC+TGG | - | chr6.3:14931962-14931981 | MS.gene80894:CDS | 45.0% | |
| CCAACAACTGTCTCATCCAT+TGG | - | chr6.3:14931625-14931644 | MS.gene80894:CDS | 45.0% | |
| CCAATGGATGAGACAGTTGT+TGG | + | chr6.3:14931628-14931647 | None:intergenic | 45.0% | |
| CGAGCCTGTTTATGTAGAGA+TGG | - | chr6.3:14932326-14932345 | MS.gene80894:CDS | 45.0% | |
| CTCAGCTACACCATTGTGTT+GGG | + | chr6.3:14931893-14931912 | None:intergenic | 45.0% | |
| CTGGCACAGTTCTTTCCATT+CGG | + | chr6.3:14931864-14931883 | None:intergenic | 45.0% | |
| CTTAATCAACCGAGGTCCAT+CGG | - | chr6.3:14932011-14932030 | MS.gene80894:CDS | 45.0% | |
| CTTAATCTCCGTAGGCCAAT+TGG | - | chr6.3:14931246-14931265 | MS.gene80894:intron | 45.0% | |
| CTTCTCGATAGACAAGCACT+TGG | - | chr6.3:14930341-14930360 | MS.gene80894:intron | 45.0% | |
| GAAGTAATGCTTCCCACCAA+TGG | + | chr6.3:14931644-14931663 | None:intergenic | 45.0% | |
| GAATCAAGAGGCGAAAGATG+AGG | - | chr6.3:14930952-14930971 | MS.gene80894:intron | 45.0% | |
| GATTCCCCAGTCAGAAGATT+TGG | - | chr6.3:14932377-14932396 | MS.gene80894:CDS | 45.0% | |
| GGTACTCTTTACAAGACAGC+TGG | - | chr6.3:14931355-14931374 | MS.gene80894:intron | 45.0% | |
| TCAGCTACACCATTGTGTTG+GGG | + | chr6.3:14931892-14931911 | None:intergenic | 45.0% | |
| TCTTGTAAGGTTGTGGGCAA+AGG | - | chr6.3:14931148-14931167 | MS.gene80894:intron | 45.0% | |
| TGAGGCGGTTGTTTACACTT+CGG | - | chr6.3:14930492-14930511 | MS.gene80894:intron | 45.0% | |
| TGTCTTCCCTACCAGATAGT+TGG | - | chr6.3:14930627-14930646 | MS.gene80894:intron | 45.0% | |
| TTCGCCTCTTGATTCTTTGC+CGG | + | chr6.3:14930947-14930966 | None:intergenic | 45.0% | |
| TTCTCAGTGAAGAGATCCGA+CGG | - | chr6.3:14930723-14930742 | MS.gene80894:intron | 45.0% | |
| TTTACCACGTCCATTTCCTC+TGG | + | chr6.3:14930813-14930832 | None:intergenic | 45.0% | |
| TTTCCACTCCATACCTCTTC+TGG | + | chr6.3:14932057-14932076 | None:intergenic | 45.0% | |
| ! | AGAAGTTTTGCTACGAGCAC+GGG | - | chr6.3:14931836-14931855 | MS.gene80894:CDS | 45.0% |
| ! | AGAGGTATGGAGTGGAAAAG+AGG | - | chr6.3:14932059-14932078 | MS.gene80894:CDS | 45.0% |
| ! | ATACCAGAAGAGGTATGGAG+TGG | - | chr6.3:14932051-14932070 | MS.gene80894:CDS | 45.0% |
| ! | TGTTTTCATCATCCCAGAGG+CGG | + | chr6.3:14932215-14932234 | None:intergenic | 45.0% |
| AACACAACCACCAACGACTC+AGG | - | chr6.3:14932297-14932316 | MS.gene80894:CDS | 50.0% | |
| AAGCTCAGAACCGACAATGG+TGG | - | chr6.3:14931790-14931809 | MS.gene80894:CDS | 50.0% | |
| AAGTTCGATGGTGCGGACTT+TGG | - | chr6.3:14930218-14930237 | MS.gene80894:CDS | 50.0% | |
| ACAGTAGCGCTCCAACTATC+TGG | + | chr6.3:14930641-14930660 | None:intergenic | 50.0% | |
| AGCGCTCCAACTATCTGGTA+GGG | + | chr6.3:14930636-14930655 | None:intergenic | 50.0% | |
| ATCTCATCTGTGGGACTTCC+TGG | + | chr6.3:14932360-14932379 | None:intergenic | 50.0% | |
| ATTCACCCAACTCTCTCCGT+CGG | + | chr6.3:14930742-14930761 | None:intergenic | 50.0% | |
| CAAGAGATGGAAAGCCATGG+TGG | - | chr6.3:14931741-14931760 | MS.gene80894:CDS | 50.0% | |
| CAGTCTTCCACGGTGATGAT+TGG | - | chr6.3:14931287-14931306 | MS.gene80894:intron | 50.0% | |
| CGAATGGAAAGAACTGTGCC+AGG | - | chr6.3:14931862-14931881 | MS.gene80894:CDS | 50.0% | |
| GACTGGGGAATCTCATCTGT+GGG | + | chr6.3:14932369-14932388 | None:intergenic | 50.0% | |
| GAGTCTTGGGTGTTAGACTC+TGG | - | chr6.3:14931037-14931056 | MS.gene80894:intron | 50.0% | |
| GCAAAAGAGAAAACCACCGC+TGG | - | chr6.3:14930407-14930426 | MS.gene80894:intron | 50.0% | |
| GCTCAGCTACACCATTGTGT+TGG | + | chr6.3:14931894-14931913 | None:intergenic | 50.0% | |
| GCTTCTGCCCAGAAGTTCTT+TGG | + | chr6.3:14931973-14931992 | None:intergenic | 50.0% | |
| GGAGAGCAAGGAAGAGTCTT+GGG | - | chr6.3:14931024-14931043 | MS.gene80894:intron | 50.0% | |
| GGCTACACAACAGTCTTCCA+CGG | - | chr6.3:14931277-14931296 | MS.gene80894:intron | 50.0% | |
| GTAGAGATGGACGATGTTCC+AGG | - | chr6.3:14932339-14932358 | MS.gene80894:CDS | 50.0% | |
| TAGCGCTCCAACTATCTGGT+AGG | + | chr6.3:14930637-14930656 | None:intergenic | 50.0% | |
| TCAACCAGAGGAAATGGACG+TGG | - | chr6.3:14930806-14930825 | MS.gene80894:intron | 50.0% | |
| TCGCCTCTTGATTCTTTGCC+GGG | + | chr6.3:14930946-14930965 | None:intergenic | 50.0% | |
| TGACTGGGGAATCTCATCTG+TGG | + | chr6.3:14932370-14932389 | None:intergenic | 50.0% | |
| TGGAGAGCAAGGAAGAGTCT+TGG | - | chr6.3:14931023-14931042 | MS.gene80894:intron | 50.0% | |
| TGTAGCCTTCGTCAGCCAAT+TGG | + | chr6.3:14931264-14931283 | None:intergenic | 50.0% | |
| ! | AATGTTGCTTCCACCTCAGG+AGG | - | chr6.3:14930977-14930996 | MS.gene80894:intron | 50.0% |
| ! | GCAAATGTTGCTTCCACCTC+AGG | - | chr6.3:14930974-14930993 | MS.gene80894:intron | 50.0% |
| ! | TTATGCTCCAATGGCACCGA+TGG | + | chr6.3:14932030-14932049 | None:intergenic | 50.0% |
| ! | TTCGTCAGCCAATTGGCCTA+CGG | + | chr6.3:14931257-14931276 | None:intergenic | 50.0% |
| !! | AACCACCGCTGGTCTTATGA+AGG | - | chr6.3:14930418-14930437 | MS.gene80894:intron | 50.0% |
| !!! | ATGGTGCGGACTTTGGCTTT+TGG | - | chr6.3:14930225-14930244 | MS.gene80894:CDS | 50.0% |
| ACAGCTGTGAGTAGCTCCTC+GGG | - | chr6.3:14930662-14930681 | MS.gene80894:intron | 55.0% | |
| AGAAGCTTGCGTGTGCAGTC+AGG | - | chr6.3:14931943-14931962 | MS.gene80894:CDS | 55.0% | |
| AGAGATCCGACGGAGAGAGT+TGG | - | chr6.3:14930733-14930752 | MS.gene80894:intron | 55.0% | |
| AGCCTTCATAAGACCAGCGG+TGG | + | chr6.3:14930423-14930442 | None:intergenic | 55.0% | |
| ATGAGTTTGGCTACCGCCTC+TGG | - | chr6.3:14932199-14932218 | MS.gene80894:CDS | 55.0% | |
| CACAGCTGTGAGTAGCTCCT+CGG | - | chr6.3:14930661-14930680 | MS.gene80894:intron | 55.0% | |
| CCAGGTACTCCCCAACACAA+TGG | - | chr6.3:14931880-14931899 | MS.gene80894:CDS | 55.0% | |
| CTCGCTCAATCCTGAGTCGT+TGG | + | chr6.3:14932310-14932329 | None:intergenic | 55.0% | |
| GAGATCCGACGGAGAGAGTT+GGG | - | chr6.3:14930734-14930753 | MS.gene80894:intron | 55.0% | |
| GCTCAATCCTGAGTCGTTGG+TGG | + | chr6.3:14932307-14932326 | None:intergenic | 55.0% | |
| GCTCCCGGCAAAGAATCAAG+AGG | - | chr6.3:14930940-14930959 | MS.gene80894:intron | 55.0% | |
| GGTGCAATGACGATAGCTCG+CGG | - | chr6.3:14931322-14931341 | MS.gene80894:intron | 55.0% | |
| GTAGGCCAATTGGCTGACGA+AGG | - | chr6.3:14931256-14931275 | MS.gene80894:intron | 55.0% | |
| TGACTGCACACGCAAGCTTC+TGG | + | chr6.3:14931944-14931963 | None:intergenic | 55.0% | |
| TGAGTTTGGCTACCGCCTCT+GGG | - | chr6.3:14932200-14932219 | MS.gene80894:CDS | 55.0% | |
| ! | GATGACAGAAGGCGCATCAG+TGG | - | chr6.3:14930514-14930533 | MS.gene80894:intron | 55.0% |
| !! | CCATTGTGTTGGGGAGTACC+TGG | + | chr6.3:14931883-14931902 | None:intergenic | 55.0% |
| CTACGAGCACGGGATCCGAA+TGG | - | chr6.3:14931846-14931865 | MS.gene80894:CDS | 60.0% | |
| GTTGCTTCCACCTCAGGAGG+AGG | - | chr6.3:14930980-14930999 | MS.gene80894:intron | 60.0% | |
| !! | CCAATGGCACCGATGGACCT+CGG | + | chr6.3:14932023-14932042 | None:intergenic | 60.0% |
| CAACGCGTCACCTCCTCCTG+AGG | + | chr6.3:14930993-14931012 | None:intergenic | 65.0% | |
| !! | CCGAGGTCCATCGGTGCCAT+TGG | - | chr6.3:14932020-14932039 | MS.gene80894:CDS | 65.0% |
| CGCGTCACCTCCTCCTGAGG+TGG | + | chr6.3:14930990-14931009 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 14930185 | 14932593 | 14930185 | ID=MS.gene80894 |
| chr6.3 | mRNA | 14930185 | 14932593 | 14930185 | ID=MS.gene80894.t1;Parent=MS.gene80894 |
| chr6.3 | exon | 14931609 | 14932593 | 14931609 | ID=MS.gene80894.t1.exon1;Parent=MS.gene80894.t1 |
| chr6.3 | CDS | 14931609 | 14932593 | 14931609 | ID=cds.MS.gene80894.t1;Parent=MS.gene80894.t1 |
| chr6.3 | exon | 14930185 | 14930273 | 14930185 | ID=MS.gene80894.t1.exon2;Parent=MS.gene80894.t1 |
| chr6.3 | CDS | 14930185 | 14930273 | 14930185 | ID=cds.MS.gene80894.t1;Parent=MS.gene80894.t1 |
| Gene Sequence |
| Protein sequence |
