Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81017.t1 | XP_013459414.1 | 75.9 | 299 | 64 | 3 | 7 | 302 | 268 | 561 | 1.70E-92 | 349.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81017.t1 | Q9LKL2 | 51.9 | 154 | 57 | 7 | 162 | 298 | 439 | 592 | 8.0e-30 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81017.t1 | A0A072V5J5 | 75.9 | 299 | 64 | 3 | 7 | 302 | 268 | 561 | 1.2e-92 | 349.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene81017.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050702 | MS.gene81017 | -0.844015 | 9.82E-59 | -1.69E-46 |
| MS.gene052224 | MS.gene81017 | -0.813652 | 2.30E-51 | -1.69E-46 |
| MS.gene053401 | MS.gene81017 | 0.830366 | 3.06E-55 | -1.69E-46 |
| MS.gene056338 | MS.gene81017 | 0.815779 | 7.76E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81017.t1 | MTR_3g037390 | 86.957 | 299 | 31 | 3 | 7 | 302 | 268 | 561 | 0.0 | 538 |
| MS.gene81017.t1 | MTR_3g037390 | 86.957 | 299 | 31 | 3 | 7 | 302 | 164 | 457 | 0.0 | 537 |
| MS.gene81017.t1 | MTR_4g108880 | 57.288 | 295 | 95 | 4 | 7 | 298 | 298 | 564 | 1.80e-111 | 335 |
| MS.gene81017.t1 | MTR_4g061360 | 68.750 | 48 | 15 | 0 | 235 | 282 | 717 | 764 | 4.79e-16 | 79.0 |
| MS.gene81017.t1 | MTR_7g118260 | 60.000 | 50 | 20 | 0 | 235 | 284 | 367 | 416 | 3.36e-14 | 72.8 |
| MS.gene81017.t1 | MTR_7g118260 | 60.000 | 50 | 20 | 0 | 235 | 284 | 451 | 500 | 3.77e-14 | 73.2 |
| MS.gene81017.t1 | MTR_7g118260 | 60.000 | 50 | 20 | 0 | 235 | 284 | 537 | 586 | 6.20e-14 | 72.4 |
| MS.gene81017.t1 | MTR_7g118260 | 60.000 | 50 | 20 | 0 | 235 | 284 | 500 | 549 | 7.68e-14 | 72.0 |
| MS.gene81017.t1 | MTR_1g067110 | 61.404 | 57 | 19 | 1 | 226 | 279 | 513 | 569 | 3.27e-13 | 70.1 |
| MS.gene81017.t1 | MTR_3g092780 | 68.889 | 45 | 14 | 0 | 239 | 283 | 631 | 675 | 3.62e-13 | 70.1 |
| MS.gene81017.t1 | MTR_3g092780 | 68.889 | 45 | 14 | 0 | 239 | 283 | 630 | 674 | 3.68e-13 | 70.1 |
| MS.gene81017.t1 | MTR_3g092780 | 68.889 | 45 | 14 | 0 | 239 | 283 | 590 | 634 | 3.76e-13 | 70.1 |
| MS.gene81017.t1 | MTR_3g092780 | 68.889 | 45 | 14 | 0 | 239 | 283 | 589 | 633 | 3.86e-13 | 70.1 |
| MS.gene81017.t1 | MTR_1g067110 | 61.404 | 57 | 19 | 1 | 226 | 279 | 678 | 734 | 4.62e-13 | 70.1 |
| MS.gene81017.t1 | MTR_4g093730 | 55.357 | 56 | 25 | 0 | 225 | 280 | 94 | 149 | 7.76e-13 | 68.6 |
| MS.gene81017.t1 | MTR_8g024260 | 66.667 | 45 | 15 | 0 | 238 | 282 | 583 | 627 | 1.95e-12 | 68.2 |
| MS.gene81017.t1 | MTR_3g100040 | 57.143 | 49 | 21 | 0 | 231 | 279 | 19 | 67 | 4.56e-12 | 65.5 |
| MS.gene81017.t1 | MTR_3g100040 | 53.704 | 54 | 25 | 0 | 226 | 279 | 118 | 171 | 5.84e-12 | 65.9 |
| MS.gene81017.t1 | MTR_5g066510 | 56.000 | 50 | 20 | 1 | 239 | 286 | 135 | 184 | 2.28e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81017.t1 | AT5G61380 | 43.320 | 247 | 80 | 10 | 68 | 300 | 394 | 594 | 1.77e-44 | 160 |
| MS.gene81017.t1 | AT5G02810 | 63.793 | 58 | 21 | 0 | 231 | 288 | 517 | 574 | 8.69e-17 | 80.9 |
| MS.gene81017.t1 | AT5G02810 | 63.793 | 58 | 21 | 0 | 231 | 288 | 661 | 718 | 1.30e-16 | 80.5 |
| MS.gene81017.t1 | AT2G46670 | 71.111 | 45 | 13 | 0 | 239 | 283 | 132 | 176 | 2.55e-16 | 75.9 |
| MS.gene81017.t1 | AT2G46790 | 69.565 | 46 | 14 | 0 | 238 | 283 | 259 | 304 | 1.17e-15 | 76.3 |
| MS.gene81017.t1 | AT2G46790 | 69.565 | 46 | 14 | 0 | 238 | 283 | 259 | 304 | 1.17e-15 | 76.3 |
| MS.gene81017.t1 | AT2G46790 | 69.565 | 46 | 14 | 0 | 238 | 283 | 299 | 344 | 2.33e-15 | 75.9 |
| MS.gene81017.t1 | AT2G46790 | 69.565 | 46 | 14 | 0 | 238 | 283 | 416 | 461 | 3.29e-15 | 76.3 |
| MS.gene81017.t1 | AT5G24470 | 55.357 | 56 | 25 | 0 | 227 | 282 | 497 | 552 | 2.38e-13 | 70.9 |
| MS.gene81017.t1 | AT5G60100 | 65.217 | 46 | 16 | 0 | 238 | 283 | 441 | 486 | 2.40e-13 | 70.5 |
| MS.gene81017.t1 | AT5G60100 | 65.217 | 46 | 16 | 0 | 238 | 283 | 441 | 486 | 2.40e-13 | 70.5 |
| MS.gene81017.t1 | AT5G60100 | 65.217 | 46 | 16 | 0 | 238 | 283 | 441 | 486 | 2.40e-13 | 70.5 |
| MS.gene81017.t1 | AT5G60100 | 68.182 | 44 | 14 | 0 | 238 | 281 | 468 | 511 | 3.25e-13 | 70.1 |
Find 68 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATATTCATTGGGTAATA+GGG | 0.232593 | 3.4:-29962039 | None:intergenic |
| GCACATATTCATTGGGTAAT+AGG | 0.254453 | 3.4:-29962040 | None:intergenic |
| GAACAATAGGTCCCATTTCT+TGG | 0.266361 | 3.4:-29961730 | None:intergenic |
| GGACAATGAACCCCATTTCT+TGG | 0.284413 | 3.4:-29961811 | None:intergenic |
| TTGTACTCCACCTGCATCTT+TGG | 0.287125 | 3.4:+29961648 | MS.gene81017:CDS |
| ACTCCCGATGACAAATAATA+TGG | 0.320119 | 3.4:-29961874 | None:intergenic |
| GGTTGTAAGCACATATTCAT+TGG | 0.352891 | 3.4:-29962048 | None:intergenic |
| AGTCTTATACATCCAAGAAA+TGG | 0.355720 | 3.4:+29961718 | MS.gene81017:CDS |
| CAACCAGGTCAGATTCCTTC+AGG | 0.363330 | 3.4:+29962066 | MS.gene81017:CDS |
| CAAAATTAAGTAAAGTTGAT+AGG | 0.368608 | 3.4:+29962124 | MS.gene81017:CDS |
| TGTCTGATGCATCCAAGAAA+TGG | 0.381220 | 3.4:+29961799 | MS.gene81017:CDS |
| GTCTGATGCATCCAAGAAAT+GGG | 0.388638 | 3.4:+29961800 | MS.gene81017:CDS |
| GGTGTTAATGTGGATCTTAA+TGG | 0.393979 | 3.4:+29962282 | MS.gene81017:CDS |
| CAGCATGAAACAATCCTTCA+AGG | 0.394565 | 3.4:-29961459 | None:intergenic |
| CTTATCGAGCTCAGAACAAT+AGG | 0.397465 | 3.4:-29961743 | None:intergenic |
| TATCCATATTATTTGTCATC+GGG | 0.404835 | 3.4:+29961871 | MS.gene81017:CDS |
| ACCAGGTATACTATTGCTGC+TGG | 0.455033 | 3.4:-29961605 | None:intergenic |
| GTTGTAAGCACATATTCATT+GGG | 0.463517 | 3.4:-29962047 | None:intergenic |
| AACTTCCATCCTCACATGTA+AGG | 0.465807 | 3.4:-29961491 | None:intergenic |
| CATGCTAAAAGAAACCTTGA+AGG | 0.470407 | 3.4:+29961445 | MS.gene81017:CDS |
| TGATACATTTGCGCCGATGA+AGG | 0.476546 | 3.4:-29961913 | None:intergenic |
| CCCAGCAGCAATAGTATACC+TGG | 0.477013 | 3.4:+29961604 | MS.gene81017:CDS |
| ATTGAATATGATGAAAATGA+AGG | 0.483324 | 3.4:+29962318 | MS.gene81017:CDS |
| GTCTTATACATCCAAGAAAT+GGG | 0.483992 | 3.4:+29961719 | MS.gene81017:CDS |
| ATGTTAGATCTTTCACGCTC+AGG | 0.497470 | 3.4:-29961832 | None:intergenic |
| CTCTCAATAGATAAAGAACC+AGG | 0.507067 | 3.4:-29961622 | None:intergenic |
| GGTCAGTCATGGCCATCCTT+CGG | 0.511134 | 3.4:+29962087 | MS.gene81017:CDS |
| TGTGAGGCTTCCAAAGATGC+AGG | 0.515634 | 3.4:-29961658 | None:intergenic |
| TCATGTTATGATGCCTTCAT+CGG | 0.517737 | 3.4:+29961900 | MS.gene81017:CDS |
| AGAAAATTAGGTATGTCAAT+CGG | 0.521151 | 3.4:+29962202 | MS.gene81017:CDS |
| CAGCATGATTCTGCAGGTCG+TGG | 0.521808 | 3.4:-29961945 | None:intergenic |
| GACATCATTCCGGTGGTATG+AGG | 0.533530 | 3.4:-29962012 | None:intergenic |
| CATGAAGCATGTGCTCAACA+AGG | 0.536975 | 3.4:+29961517 | MS.gene81017:CDS |
| TTATCCATATTATTTGTCAT+CGG | 0.538736 | 3.4:+29961870 | MS.gene81017:CDS |
| ATAGGGGTAGGACATCATTC+CGG | 0.544576 | 3.4:-29962022 | None:intergenic |
| CCAGGTATACTATTGCTGCT+GGG | 0.549234 | 3.4:-29961604 | None:intergenic |
| ATGAATATGTGCTTACAACC+AGG | 0.553880 | 3.4:+29962051 | MS.gene81017:CDS |
| TTGAATATGATGAAAATGAA+GGG | 0.559631 | 3.4:+29962319 | MS.gene81017:CDS |
| ATGTACCAGCATGATTCTGC+AGG | 0.560138 | 3.4:-29961951 | None:intergenic |
| CACGACCTGCAGAATCATGC+TGG | 0.560739 | 3.4:+29961946 | MS.gene81017:CDS |
| TCGGATGAACTTCCGAAGGA+TGG | 0.565075 | 3.4:-29962099 | None:intergenic |
| TGAAAGACGGCCTCGTGTGA+GGG | 0.569464 | 3.4:+29962236 | MS.gene81017:CDS |
| TGCTTCGGATGAACTTCCGA+AGG | 0.577350 | 3.4:-29962103 | None:intergenic |
| ATTCATTGGGTAATAGGGGT+AGG | 0.578636 | 3.4:-29962034 | None:intergenic |
| AGATTCCTTCAGGTCAGTCA+TGG | 0.579147 | 3.4:+29962076 | MS.gene81017:CDS |
| CAGTTTGTCAGTAAGATGAA+TGG | 0.579522 | 3.4:+29962261 | MS.gene81017:CDS |
| CAGGTATACTATTGCTGCTG+GGG | 0.581806 | 3.4:-29961603 | None:intergenic |
| GGAAACAACTTGCTGAAAGA+CGG | 0.584344 | 3.4:+29962223 | MS.gene81017:CDS |
| CTGAAAGACGGCCTCGTGTG+AGG | 0.586756 | 3.4:+29962235 | MS.gene81017:CDS |
| GAAAGACGGCCTCGTGTGAG+GGG | 0.590286 | 3.4:+29962237 | MS.gene81017:CDS |
| TGCCGCCTTACATGTGAGGA+TGG | 0.593042 | 3.4:+29961486 | MS.gene81017:CDS |
| GATGGCCATGACTGACCTGA+AGG | 0.597115 | 3.4:-29962081 | None:intergenic |
| ACATATTCATTGGGTAATAG+GGG | 0.603859 | 3.4:-29962038 | None:intergenic |
| ATGAAGCATGTGCTCAACAA+GGG | 0.604325 | 3.4:+29961518 | MS.gene81017:CDS |
| TCATCATATTCAATGGAAGG+AGG | 0.605016 | 3.4:-29962309 | None:intergenic |
| TAAGATGAATGGTGTTAATG+TGG | 0.608624 | 3.4:+29962272 | MS.gene81017:CDS |
| CAAGGCGGTCCTCATACCAC+CGG | 0.623009 | 3.4:+29962003 | MS.gene81017:CDS |
| CACTACAATCATGTTCCACA+AGG | 0.630620 | 3.4:+29961985 | MS.gene81017:CDS |
| GTGGTATGAGGACCGCCTTG+TGG | 0.638168 | 3.4:-29962000 | None:intergenic |
| TGACCTGAAGGAATCTGACC+TGG | 0.642802 | 3.4:-29962069 | None:intergenic |
| GAGGCTTCCAAAGATGCAGG+TGG | 0.655405 | 3.4:-29961655 | None:intergenic |
| TTCCATCCTCACATGTAAGG+CGG | 0.658020 | 3.4:-29961488 | None:intergenic |
| ACAAACTGTCCCCTCACACG+AGG | 0.662346 | 3.4:-29962246 | None:intergenic |
| TGAAGCATGTGCTCAACAAG+GGG | 0.671878 | 3.4:+29961519 | MS.gene81017:CDS |
| TACAATCATGTTCCACAAGG+CGG | 0.678482 | 3.4:+29961988 | MS.gene81017:CDS |
| GGGGTAGGACATCATTCCGG+TGG | 0.679136 | 3.4:-29962019 | None:intergenic |
| TCTGATGCATCCAAGAAATG+GGG | 0.684504 | 3.4:+29961801 | MS.gene81017:CDS |
| ACAATGCCGCCTTACATGTG+AGG | 0.719839 | 3.4:+29961482 | MS.gene81017:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATATGATGAAAATGA+AGG | + | chr3.4:29962318-29962337 | MS.gene81017:CDS | 20.0% |
| !! | TTATCCATATTATTTGTCAT+CGG | + | chr3.4:29961870-29961889 | MS.gene81017:CDS | 20.0% |
| !! | TTGAATATGATGAAAATGAA+GGG | + | chr3.4:29962319-29962338 | MS.gene81017:CDS | 20.0% |
| !!! | AACTTTACTTAATTTTGCTT+CGG | - | chr3.4:29962121-29962140 | None:intergenic | 20.0% |
| !!! | CAAAATTAAGTAAAGTTGAT+AGG | + | chr3.4:29962124-29962143 | MS.gene81017:CDS | 20.0% |
| !!! | TTCATTTTCATCATATTCAA+TGG | - | chr3.4:29962319-29962338 | None:intergenic | 20.0% |
| ! | AGAAAATTAGGTATGTCAAT+CGG | + | chr3.4:29962202-29962221 | MS.gene81017:CDS | 25.0% |
| ! | TATCCATATTATTTGTCATC+GGG | + | chr3.4:29961871-29961890 | MS.gene81017:CDS | 25.0% |
| !! | TTTTCATCATATTCAATGGA+AGG | - | chr3.4:29962315-29962334 | None:intergenic | 25.0% |
| !!! | GCTGTTTTGATAAGAAAATT+AGG | + | chr3.4:29962190-29962209 | MS.gene81017:CDS | 25.0% |
| ACATATTCATTGGGTAATAG+GGG | - | chr3.4:29962041-29962060 | None:intergenic | 30.0% | |
| CACATATTCATTGGGTAATA+GGG | - | chr3.4:29962042-29962061 | None:intergenic | 30.0% | |
| GTCTTATACATCCAAGAAAT+GGG | + | chr3.4:29961719-29961738 | MS.gene81017:CDS | 30.0% | |
| GTTGTAAGCACATATTCATT+GGG | - | chr3.4:29962050-29962069 | None:intergenic | 30.0% | |
| ! | AGTCTTATACATCCAAGAAA+TGG | + | chr3.4:29961718-29961737 | MS.gene81017:CDS | 30.0% |
| ! | GCAAATTTTCTTCTTCGTAA+CGG | - | chr3.4:29961690-29961709 | None:intergenic | 30.0% |
| ! | TAAGATGAATGGTGTTAATG+TGG | + | chr3.4:29962272-29962291 | MS.gene81017:CDS | 30.0% |
| ACTCCCGATGACAAATAATA+TGG | - | chr3.4:29961877-29961896 | None:intergenic | 35.0% | |
| ATGAATATGTGCTTACAACC+AGG | + | chr3.4:29962051-29962070 | MS.gene81017:CDS | 35.0% | |
| CAGTTTGTCAGTAAGATGAA+TGG | + | chr3.4:29962261-29962280 | MS.gene81017:CDS | 35.0% | |
| CATGCTAAAAGAAACCTTGA+AGG | + | chr3.4:29961445-29961464 | MS.gene81017:CDS | 35.0% | |
| CTCTCAATAGATAAAGAACC+AGG | - | chr3.4:29961625-29961644 | None:intergenic | 35.0% | |
| GATCTCGAAGTATGCAAAAA+TGG | + | chr3.4:29961547-29961566 | MS.gene81017:CDS | 35.0% | |
| GCACATATTCATTGGGTAAT+AGG | - | chr3.4:29962043-29962062 | None:intergenic | 35.0% | |
| GGTGTTAATGTGGATCTTAA+TGG | + | chr3.4:29962282-29962301 | MS.gene81017:CDS | 35.0% | |
| GGTTGTAAGCACATATTCAT+TGG | - | chr3.4:29962051-29962070 | None:intergenic | 35.0% | |
| TCATCATATTCAATGGAAGG+AGG | - | chr3.4:29962312-29962331 | None:intergenic | 35.0% | |
| TCATGTTATGATGCCTTCAT+CGG | + | chr3.4:29961900-29961919 | MS.gene81017:CDS | 35.0% | |
| AACTTCCATCCTCACATGTA+AGG | - | chr3.4:29961494-29961513 | None:intergenic | 40.0% | |
| ATGAAGCATGTGCTCAACAA+GGG | + | chr3.4:29961518-29961537 | MS.gene81017:CDS | 40.0% | |
| ATGTTAGATCTTTCACGCTC+AGG | - | chr3.4:29961835-29961854 | None:intergenic | 40.0% | |
| ATTCATTGGGTAATAGGGGT+AGG | - | chr3.4:29962037-29962056 | None:intergenic | 40.0% | |
| CACTACAATCATGTTCCACA+AGG | + | chr3.4:29961985-29962004 | MS.gene81017:CDS | 40.0% | |
| CAGCATGAAACAATCCTTCA+AGG | - | chr3.4:29961462-29961481 | None:intergenic | 40.0% | |
| CTTATCGAGCTCAGAACAAT+AGG | - | chr3.4:29961746-29961765 | None:intergenic | 40.0% | |
| GAACAATAGGTCCCATTTCT+TGG | - | chr3.4:29961733-29961752 | None:intergenic | 40.0% | |
| GTCTGATGCATCCAAGAAAT+GGG | + | chr3.4:29961800-29961819 | MS.gene81017:CDS | 40.0% | |
| TACAATCATGTTCCACAAGG+CGG | + | chr3.4:29961988-29962007 | MS.gene81017:CDS | 40.0% | |
| TCTGATGCATCCAAGAAATG+GGG | + | chr3.4:29961801-29961820 | MS.gene81017:CDS | 40.0% | |
| TGTCTGATGCATCCAAGAAA+TGG | + | chr3.4:29961799-29961818 | MS.gene81017:CDS | 40.0% | |
| ! | TTCGTAACGGTTTTTCTGTG+AGG | - | chr3.4:29961677-29961696 | None:intergenic | 40.0% |
| ! | TTGTGATGCAAATTTTGCGC+AGG | - | chr3.4:29961778-29961797 | None:intergenic | 40.0% |
| !! | GGAAACAACTTGCTGAAAGA+CGG | + | chr3.4:29962223-29962242 | MS.gene81017:CDS | 40.0% |
| ACCAGGTATACTATTGCTGC+TGG | - | chr3.4:29961608-29961627 | None:intergenic | 45.0% | |
| AGATTCCTTCAGGTCAGTCA+TGG | + | chr3.4:29962076-29962095 | MS.gene81017:CDS | 45.0% | |
| ATAGGGGTAGGACATCATTC+CGG | - | chr3.4:29962025-29962044 | None:intergenic | 45.0% | |
| ATGTACCAGCATGATTCTGC+AGG | - | chr3.4:29961954-29961973 | None:intergenic | 45.0% | |
| CAGGTATACTATTGCTGCTG+GGG | - | chr3.4:29961606-29961625 | None:intergenic | 45.0% | |
| CATGAAGCATGTGCTCAACA+AGG | + | chr3.4:29961517-29961536 | MS.gene81017:CDS | 45.0% | |
| CCAGGTATACTATTGCTGCT+GGG | - | chr3.4:29961607-29961626 | None:intergenic | 45.0% | |
| GGACAATGAACCCCATTTCT+TGG | - | chr3.4:29961814-29961833 | None:intergenic | 45.0% | |
| TGAAGCATGTGCTCAACAAG+GGG | + | chr3.4:29961519-29961538 | MS.gene81017:CDS | 45.0% | |
| TTCCATCCTCACATGTAAGG+CGG | - | chr3.4:29961491-29961510 | None:intergenic | 45.0% | |
| TTGTACTCCACCTGCATCTT+TGG | + | chr3.4:29961648-29961667 | MS.gene81017:CDS | 45.0% | |
| ! | TGATACATTTGCGCCGATGA+AGG | - | chr3.4:29961916-29961935 | None:intergenic | 45.0% |
| ACAATGCCGCCTTACATGTG+AGG | + | chr3.4:29961482-29961501 | MS.gene81017:CDS | 50.0% | |
| CAACCAGGTCAGATTCCTTC+AGG | + | chr3.4:29962066-29962085 | MS.gene81017:CDS | 50.0% | |
| CCCAGCAGCAATAGTATACC+TGG | + | chr3.4:29961604-29961623 | MS.gene81017:CDS | 50.0% | |
| GACATCATTCCGGTGGTATG+AGG | - | chr3.4:29962015-29962034 | None:intergenic | 50.0% | |
| TCGGATGAACTTCCGAAGGA+TGG | - | chr3.4:29962102-29962121 | None:intergenic | 50.0% | |
| TGACCTGAAGGAATCTGACC+TGG | - | chr3.4:29962072-29962091 | None:intergenic | 50.0% | |
| TGCTTCGGATGAACTTCCGA+AGG | - | chr3.4:29962106-29962125 | None:intergenic | 50.0% | |
| TGTGAGGCTTCCAAAGATGC+AGG | - | chr3.4:29961661-29961680 | None:intergenic | 50.0% | |
| ACAAACTGTCCCCTCACACG+AGG | - | chr3.4:29962249-29962268 | None:intergenic | 55.0% | |
| CACGACCTGCAGAATCATGC+TGG | + | chr3.4:29961946-29961965 | MS.gene81017:CDS | 55.0% | |
| CAGCATGATTCTGCAGGTCG+TGG | - | chr3.4:29961948-29961967 | None:intergenic | 55.0% | |
| GAGGCTTCCAAAGATGCAGG+TGG | - | chr3.4:29961658-29961677 | None:intergenic | 55.0% | |
| GATGGCCATGACTGACCTGA+AGG | - | chr3.4:29962084-29962103 | None:intergenic | 55.0% | |
| GGTCAGTCATGGCCATCCTT+CGG | + | chr3.4:29962087-29962106 | MS.gene81017:CDS | 55.0% | |
| TGAAAGACGGCCTCGTGTGA+GGG | + | chr3.4:29962236-29962255 | MS.gene81017:CDS | 55.0% | |
| TGCCGCCTTACATGTGAGGA+TGG | + | chr3.4:29961486-29961505 | MS.gene81017:CDS | 55.0% | |
| CAAGGCGGTCCTCATACCAC+CGG | + | chr3.4:29962003-29962022 | MS.gene81017:CDS | 60.0% | |
| CTGAAAGACGGCCTCGTGTG+AGG | + | chr3.4:29962235-29962254 | MS.gene81017:CDS | 60.0% | |
| GAAAGACGGCCTCGTGTGAG+GGG | + | chr3.4:29962237-29962256 | MS.gene81017:CDS | 60.0% | |
| GGGGTAGGACATCATTCCGG+TGG | - | chr3.4:29962022-29962041 | None:intergenic | 60.0% | |
| GTGGTATGAGGACCGCCTTG+TGG | - | chr3.4:29962003-29962022 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 29961433 | 29962347 | 29961433 | ID=MS.gene81017 |
| chr3.4 | mRNA | 29961433 | 29962347 | 29961433 | ID=MS.gene81017.t1;Parent=MS.gene81017 |
| chr3.4 | exon | 29961433 | 29962347 | 29961433 | ID=MS.gene81017.t1.exon1;Parent=MS.gene81017.t1 |
| chr3.4 | CDS | 29961433 | 29962347 | 29961433 | ID=cds.MS.gene81017.t1;Parent=MS.gene81017.t1 |
| Gene Sequence |
| Protein sequence |
