AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056338


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056338.t1 MTR_4g066020 96.852 413 13 0 1 413 1 413 0.0 829
MS.gene056338.t1 MTR_1g071300 38.312 154 79 6 263 404 138 287 1.58e-21 97.1
MS.gene056338.t1 MTR_1g071300 37.500 160 84 6 263 410 138 293 1.60e-21 97.1
MS.gene056338.t1 MTR_1g071300 37.500 160 84 6 263 410 138 293 2.26e-21 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056338.t1 AT3G20810 71.981 414 109 4 4 411 5 417 0.0 608
MS.gene056338.t1 AT3G20810 70.118 425 109 5 4 411 5 428 0.0 600
MS.gene056338.t1 AT3G20810 71.320 394 107 3 4 392 5 397 0.0 579
MS.gene056338.t1 AT3G20810 69.113 327 95 3 4 325 5 330 3.91e-160 454
MS.gene056338.t1 AT3G20810 69.565 322 92 3 4 320 5 325 8.00e-159 452
MS.gene056338.t1 AT5G19840 29.562 274 141 10 176 404 15 281 4.25e-23 101
MS.gene056338.t1 AT5G19840 29.562 274 141 10 176 404 15 281 4.38e-23 101
MS.gene056338.t1 AT3G45880 25.168 298 151 11 166 404 16 300 1.01e-11 66.2
MS.gene056338.t1 AT3G45880 25.168 298 151 11 166 404 16 300 1.15e-11 66.2

Find 117 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGATATGGGGATTATTA+TGG 0.186608 4.1:+34841054 MS.gene056338:CDS
GGCGCTTAGGGCTTTGGATA+TGG 0.208142 4.1:+34841042 MS.gene056338:CDS
TTTGAATACCTGATCAAATA+AGG 0.226160 4.1:-34844134 None:intergenic
CAGCCAGGTAATGATCTTTC+AGG 0.278024 4.1:-34842796 None:intergenic
AATGGGAGGTGTAAAGATTT+TGG 0.296847 4.1:+34841154 MS.gene056338:CDS
TCCTTGGCACTCGGTGTTGC+CGG 0.319116 4.1:+34840946 MS.gene056338:CDS
CCAGTTTATCAGTTAGCTTT+TGG 0.327040 4.1:+34845709 MS.gene056338:CDS
TAAAGAGGCGCTTAGGGCTT+TGG 0.336994 4.1:+34841036 MS.gene056338:CDS
AGGATGGTTAAGGTTGATAA+TGG 0.340561 4.1:+34841136 MS.gene056338:CDS
GGCGCGAATGTCGCCGGCGG+CGG 0.341012 4.1:-34840879 None:intergenic
TTGGATATGGGGATTATTAT+GGG 0.343770 4.1:+34841055 MS.gene056338:CDS
CCAAAAGCTAACTGATAAAC+TGG 0.357343 4.1:-34845709 None:intergenic
CTGCATCGAGTGTTGGTGTT+TGG 0.362357 4.1:-34840787 None:intergenic
AATTCCAAGTCTTGCACCTT+AGG 0.363637 4.1:-34845609 None:intergenic
GAGTTTGCTTAGGAAGGATT+TGG 0.366501 4.1:+34841081 MS.gene056338:CDS
GATTACTTGCAAAGAGTTGC+TGG 0.375148 4.1:+34842884 MS.gene056338:CDS
GTTTCACACTTCCAGGTTGT+TGG 0.378528 4.1:+34844900 MS.gene056338:intron
GCGAAGTGTTGCTATGAAAA+TGG 0.381872 4.1:+34841007 MS.gene056338:CDS
AGATCTCTCAATGCTTGGTT+TGG 0.381952 4.1:+34844319 MS.gene056338:CDS
ATGCAGTCGCTGATGATAAC+TGG 0.382618 4.1:-34842824 None:intergenic
GCGCTTAGGGCTTTGGATAT+GGG 0.383753 4.1:+34841043 MS.gene056338:CDS
GAGAGTTTAAAGAGGCGCTT+AGG 0.392198 4.1:+34841029 MS.gene056338:CDS
TTTGAAGCAAGGGACTTAAC+AGG 0.394352 4.1:-34842734 None:intergenic
AGCAGCTGCACTCCGGTCCT+TGG 0.396639 4.1:+34840930 MS.gene056338:CDS
TTCTGCTGTTGTGAAGGTTT+CGG 0.399127 4.1:+34841105 MS.gene056338:CDS
TTTCACACTTCCAGGTTGTT+GGG 0.399540 4.1:+34844901 MS.gene056338:intron
TGCTGGTGACCGCACTGTTC+CGG 0.405682 4.1:+34842901 MS.gene056338:CDS
TCAGCATCCCTTATTTGATC+AGG 0.417700 4.1:+34844126 MS.gene056338:CDS
AAAACTATTTATGTGCAGAT+TGG 0.423646 4.1:+34844020 MS.gene056338:CDS
AATGCTTGGTTTGGTCCAGC+TGG 0.430502 4.1:+34844328 MS.gene056338:CDS
TTCTGCGGCGCGAATGTCGC+CGG 0.434979 4.1:-34840885 None:intergenic
GGAGAAAGCGAGGATGGTTA+AGG 0.436189 4.1:+34841126 MS.gene056338:CDS
ACAAGAGTAATTACCTCAAC+CGG 0.440109 4.1:-34842920 None:intergenic
GGGTGGGAGTTTGCTTAGGA+AGG 0.447670 4.1:+34841075 MS.gene056338:CDS
TTGAATACCTGATCAAATAA+GGG 0.448968 4.1:-34844133 None:intergenic
TGAGATGGAGTGGAGGAGTG+TGG 0.454775 4.1:-34840816 None:intergenic
CGCTTAGGGCTTTGGATATG+GGG 0.455785 4.1:+34841044 MS.gene056338:CDS
CTTTAGATCTTATCCGATCA+AGG 0.458405 4.1:-34844072 None:intergenic
CATAGTGCCACCACTTTGGC+GGG 0.459007 4.1:-34845671 None:intergenic
AATGTCGCCGGCGGCGGCGA+GGG 0.462687 4.1:-34840873 None:intergenic
TGATAACTGGAGAGCCAGCC+AGG 0.466614 4.1:-34842811 None:intergenic
ATGTCCTCCCTCGCCGCCGC+CGG 0.467944 4.1:+34840866 MS.gene056338:CDS
GAATGTCGCCGGCGGCGGCG+AGG 0.469365 4.1:-34840874 None:intergenic
GCAAAGCATGATTTCTGAGT+AGG 0.469422 4.1:-34844973 None:intergenic
GTTTCCTAAGGTGCAAGACT+TGG 0.471641 4.1:+34845605 MS.gene056338:CDS
CTTGATCGGATAAGATCTAA+AGG 0.478631 4.1:+34844073 MS.gene056338:CDS
GTCGCCGGCGGCGGCGAGGG+AGG 0.481353 4.1:-34840870 None:intergenic
AGCTAAGATCTCTCAATGCT+TGG 0.481715 4.1:+34844314 MS.gene056338:CDS
GAAGAGATCTGCCTTGTCAC+TGG 0.484449 4.1:+34842766 MS.gene056338:CDS
TGACCGCACTGTTCCGGTTG+AGG 0.485106 4.1:+34842907 MS.gene056338:CDS
GCACTCCGGTCCTTGGCACT+CGG 0.485361 4.1:+34840937 MS.gene056338:CDS
CAAAGCATGATTTCTGAGTA+GGG 0.486239 4.1:-34844972 None:intergenic
TTATGGGTGGGAGTTTGCTT+AGG 0.488417 4.1:+34841071 MS.gene056338:CDS
GGATGGTTAAGGTTGATAAT+GGG 0.494733 4.1:+34841137 MS.gene056338:CDS
CGGCGGCGAGGGAGGACATA+CGG 0.496322 4.1:-34840862 None:intergenic
AATGGCAGATAAATGAGCTT+CGG 0.499618 4.1:+34844248 MS.gene056338:intron
GGGACTTAACAGGCAAAAGT+TGG 0.501194 4.1:-34842724 None:intergenic
TCAGCGACTGCATGGCGCAC+TGG 0.503078 4.1:+34842834 MS.gene056338:CDS
CACTACAAGCTTTGAAGCAA+GGG 0.503171 4.1:-34842744 None:intergenic
CTGAAAGATCATTACCTGGC+TGG 0.509814 4.1:+34842797 MS.gene056338:CDS
CGCAGAAGCAGTTCGTGAGA+TGG 0.510927 4.1:+34840901 MS.gene056338:CDS
CGCACATAGTGCCACCACTT+TGG 0.511097 4.1:-34845675 None:intergenic
CCACCAGTAAAACAATAGTC+AGG 0.511588 4.1:-34844286 None:intergenic
GAGATGGAGTGGAGGAGTGT+GGG 0.514149 4.1:-34840815 None:intergenic
AGTTCCTCAGACAAAGATGC+TGG 0.515281 4.1:-34844945 None:intergenic
AAGCAGTTCGTGAGATGGCG+TGG 0.524892 4.1:+34840906 MS.gene056338:CDS
CATGCTTTGCAATTCCAGCC+AGG 0.532765 4.1:+34844986 MS.gene056338:CDS
CAACACCGAGTGCCAAGGAC+CGG 0.542861 4.1:-34840942 None:intergenic
TTTGGATTCTGCTGTTGTGA+AGG 0.548244 4.1:+34841099 MS.gene056338:CDS
GGATGCTGAGCAAGATATGT+AGG 0.548812 4.1:-34844112 None:intergenic
ACATAGTGCCACCACTTTGG+CGG 0.549361 4.1:-34845672 None:intergenic
GAATGTTATGATGTGGATCA+TGG 0.556277 4.1:-34844369 None:intergenic
AGATGAATTGAAGTTTCCTA+AGG 0.560556 4.1:+34845593 MS.gene056338:CDS
TGCGGCGCGAATGTCGCCGG+CGG 0.563097 4.1:-34840882 None:intergenic
TTATCCAGCATCTTTGTCTG+AGG 0.563839 4.1:+34844941 MS.gene056338:CDS
TGATGTGGATCATGGTGTAA+TGG 0.564342 4.1:-34844361 None:intergenic
GTGGCGTGACGCGTACTCGA+TGG 0.564597 4.1:+34840970 MS.gene056338:CDS
ATATGGGGATTATTATGGGT+GGG 0.564715 4.1:+34841059 MS.gene056338:CDS
CAGAAAACTAAATACCTGGC+TGG 0.564939 4.1:-34845000 None:intergenic
GGTTTCGGAGAAAGCGAGGA+TGG 0.569922 4.1:+34841120 MS.gene056338:CDS
CATCTCACGAACTGCTTCTG+CGG 0.572178 4.1:-34840900 None:intergenic
AGAGTTTAAAGAGGCGCTTA+GGG 0.572608 4.1:+34841030 MS.gene056338:CDS
CTTCCTGAAAGATCATTACC+TGG 0.575421 4.1:+34842793 MS.gene056338:CDS
GCAAGATATGTAGGACCACC+AGG 0.576296 4.1:-34844103 None:intergenic
TCTTGAATTTGATGTGTCAA+AGG 0.578033 4.1:+34841201 MS.gene056338:CDS
CTCCACTCCATCTCATCCCA+CGG 0.580867 4.1:+34840824 MS.gene056338:CDS
ACCGGCAACACCGAGTGCCA+AGG 0.583074 4.1:-34840947 None:intergenic
GAGAGAGTCGCTGATGGATG+AGG 0.583669 4.1:-34840765 None:intergenic
GTAGCCTCCGTGGGATGAGA+TGG 0.584469 4.1:-34840831 None:intergenic
AGTTATCATCAGCGACTGCA+TGG 0.585260 4.1:+34842826 MS.gene056338:CDS
TCACTACAAGCTTTGAAGCA+AGG 0.585461 4.1:-34842745 None:intergenic
CAGGAAGTTCTCCAGTGACA+AGG 0.586848 4.1:-34842777 None:intergenic
GATATGGGGATTATTATGGG+TGG 0.587263 4.1:+34841058 MS.gene056338:CDS
ACATCATAACATTCTAGCAC+AGG 0.591569 4.1:+34844378 MS.gene056338:CDS
GGAGATTCTGCATCGAGTGT+TGG 0.598648 4.1:-34840794 None:intergenic
GGCACTCGGTGTTGCCGGTG+TGG 0.599102 4.1:+34840951 MS.gene056338:CDS
AATGGCGTTACAGTTCCAGC+TGG 0.601305 4.1:-34844343 None:intergenic
TGAAGGTTTCGGAGAAAGCG+AGG 0.607500 4.1:+34841116 MS.gene056338:CDS
GACGTAGGCGTAGCCTCCGT+GGG 0.608040 4.1:-34840840 None:intergenic
TGAAAATGGAGAGTTTAAAG+AGG 0.609357 4.1:+34841021 MS.gene056338:CDS
TGTTTGGAGAGAGTCGCTGA+TGG 0.609707 4.1:-34840771 None:intergenic
GCGTGGGAGCAGCTGCACTC+CGG 0.612868 4.1:+34840923 MS.gene056338:CDS
TATATATCCCGCCAAAGTGG+TGG 0.622734 4.1:+34845664 MS.gene056338:CDS
AGAGTCGCTGATGGATGAGG+TGG 0.626527 4.1:-34840762 None:intergenic
AGCAGTTCGTGAGATGGCGT+GGG 0.629178 4.1:+34840907 MS.gene056338:CDS
GGACGTAGGCGTAGCCTCCG+TGG 0.630457 4.1:-34840841 None:intergenic
CGTGGGATGAGATGGAGTGG+AGG 0.638713 4.1:-34840823 None:intergenic
CTCCGTGGGATGAGATGGAG+TGG 0.638980 4.1:-34840826 None:intergenic
TGGTTAAGGTTGATAATGGG+AGG 0.642332 4.1:+34841140 MS.gene056338:CDS
AAAGCATGATTTCTGAGTAG+GGG 0.643449 4.1:-34844971 None:intergenic
AAAGTAATACGACATTAAGA+CGG 0.647553 4.1:-34845756 None:intergenic
TGTTATATATCCCGCCAAAG+TGG 0.659158 4.1:+34845661 MS.gene056338:CDS
TGTGCTAGAATGTTATGATG+TGG 0.685727 4.1:-34844376 None:intergenic
CACTCCATCTCATCCCACGG+AGG 0.717936 4.1:+34840827 MS.gene056338:CDS
GAGTACGCGTCACGCCACAC+CGG 0.723133 4.1:-34840965 None:intergenic
GAGGGAGGACATACGGACGT+AGG 0.726924 4.1:-34840855 None:intergenic
TTACCTCAACCGGAACAGTG+CGG 0.784273 4.1:-34842910 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTAAGTTCTTTTTTTT+TGG + chr4.1:34843205-34843224 MS.gene056338:intron 10.0%
!! AAATTTAGCTATTTAAAAAG+AGG - chr4.1:34843460-34843479 None:intergenic 15.0%
!! AATTTAGCTATTTAAAAAGA+GGG - chr4.1:34843459-34843478 None:intergenic 15.0%
!! ATTCTACCAAAAAAAAAAAA+AGG - chr4.1:34841667-34841686 None:intergenic 15.0%
!! GTATATTAATTGAAAAAAAG+AGG - chr4.1:34841602-34841621 None:intergenic 15.0%
!! TATAACACAATTGTAATATA+GGG - chr4.1:34844662-34844681 None:intergenic 15.0%
!! TCATTATAACATTTAAACAA+TGG + chr4.1:34842493-34842512 MS.gene056338:intron 15.0%
!! TTCTTACTTATATTAATACA+TGG + chr4.1:34841398-34841417 MS.gene056338:intron 15.0%
!!! AATAGCTAAATTTATTTCTA+CGG + chr4.1:34843467-34843486 MS.gene056338:intron 15.0%
!!! AGTGAATAAATAAATTTGTT+TGG + chr4.1:34843661-34843680 MS.gene056338:intron 15.0%
!!! TCATTTTATTGCTTTTAATT+AGG + chr4.1:34845467-34845486 MS.gene056338:intron 15.0%
!!! TGAATACCTTTTTTTTTTTT+TGG + chr4.1:34841658-34841677 MS.gene056338:intron 15.0%
!! AAGTTAATACTAATCACTAA+TGG + chr4.1:34841827-34841846 MS.gene056338:intron 20.0%
!! AATAGTATACTAGAAGAAAA+GGG + chr4.1:34843967-34843986 MS.gene056338:intron 20.0%
!! AATTAAGGAAATACTTCTAT+AGG - chr4.1:34845182-34845201 None:intergenic 20.0%
!! AGTAGTTATTAGTGAAATAA+AGG + chr4.1:34844574-34844593 MS.gene056338:intron 20.0%
!! AGTTTACCTATACAATATAT+GGG + chr4.1:34845350-34845369 MS.gene056338:intron 20.0%
!! ATAACATTTAAACAATGGAA+TGG + chr4.1:34842498-34842517 MS.gene056338:intron 20.0%
!! ATATAACATGATTTAACTCT+GGG - chr4.1:34844512-34844531 None:intergenic 20.0%
!! ATTTAGCTATTTAAAAAGAG+GGG - chr4.1:34843458-34843477 None:intergenic 20.0%
!! CAGAAAAAAAAAATTACAAG+AGG - chr4.1:34843921-34843940 None:intergenic 20.0%
!! CTATAACACAATTGTAATAT+AGG - chr4.1:34844663-34844682 None:intergenic 20.0%
!! GATATAAGATAGAAATGTTT+AGG - chr4.1:34845305-34845324 None:intergenic 20.0%
!! GATGAATTTATGATTAATTC+TGG - chr4.1:34843497-34843516 None:intergenic 20.0%
!! TAATAGTATACTAGAAGAAA+AGG + chr4.1:34843966-34843985 MS.gene056338:intron 20.0%
!! TACAAATTACAGTATAAAGA+CGG - chr4.1:34843861-34843880 None:intergenic 20.0%
!! TATATAACATGATTTAACTC+TGG - chr4.1:34844513-34844532 None:intergenic 20.0%
!! TATATAATTCAAGCTATGAA+TGG - chr4.1:34841635-34841654 None:intergenic 20.0%
!! TTAATACACTTTGATTACAT+TGG + chr4.1:34843388-34843407 MS.gene056338:intron 20.0%
!! TTATTAGATGAAATCTATGT+GGG - chr4.1:34841791-34841810 None:intergenic 20.0%
!! TTTATTAGATGAAATCTATG+TGG - chr4.1:34841792-34841811 None:intergenic 20.0%
!!! AAGAAATACTCTATTTCTAT+TGG - chr4.1:34841383-34841402 None:intergenic 20.0%
!!! AGAGATAAAGTTTTCAAAAT+CGG + chr4.1:34843000-34843019 MS.gene056338:intron 20.0%
!!! AGTTTTGTAATTGTTAGTTA+AGG - chr4.1:34843122-34843141 None:intergenic 20.0%
!!! ATAGCTAAATTTATTTCTAC+GGG + chr4.1:34843468-34843487 MS.gene056338:intron 20.0%
!!! GTAATTTTTTTTTTCTGTGA+TGG + chr4.1:34843924-34843943 MS.gene056338:intron 20.0%
!!! GTTTTTTAATAGAAATGTCA+AGG + chr4.1:34842243-34842262 MS.gene056338:intron 20.0%
!!! TATATTATTCCAGTTTTTCT+TGG - chr4.1:34842864-34842883 None:intergenic 20.0%
!!! TATTTTGAACGAATTGATTT+AGG + chr4.1:34841930-34841949 MS.gene056338:intron 20.0%
!!! TGTATAATATTTTTACAGCT+CGG - chr4.1:34841447-34841466 None:intergenic 20.0%
!!! TTATTGCTTTTTGATATTTC+TGG + chr4.1:34845510-34845529 MS.gene056338:intron 20.0%
!!! TTCAAAATACATTTTTGCTA+TGG - chr4.1:34841919-34841938 None:intergenic 20.0%
! AAAAAACATTTCTCCGTTAA+TGG - chr4.1:34842458-34842477 None:intergenic 25.0%
! AAAACTATTTATGTGCAGAT+TGG + chr4.1:34844020-34844039 MS.gene056338:CDS 25.0%
! AAATAAGAACCATAATAGCA+AGG - chr4.1:34844538-34844557 None:intergenic 25.0%
! AATAAGAACCATAATAGCAA+GGG - chr4.1:34844537-34844556 None:intergenic 25.0%
! ACAAATTACAGTATAAAGAC+GGG - chr4.1:34843860-34843879 None:intergenic 25.0%
! ACAACTTTGTTACTAGTATT+TGG + chr4.1:34843241-34843260 MS.gene056338:intron 25.0%
! ACAGATTTCTCTTAAGATAA+GGG - chr4.1:34844769-34844788 None:intergenic 25.0%
! ACATGAGTAAAATGATTATG+GGG + chr4.1:34842639-34842658 MS.gene056338:intron 25.0%
! AGACATGAGTAAAATGATTA+TGG + chr4.1:34842637-34842656 MS.gene056338:intron 25.0%
! ATAAATACAAACAACACTTG+AGG - chr4.1:34843889-34843908 None:intergenic 25.0%
! CAACTTTGTTACTAGTATTT+GGG + chr4.1:34843242-34843261 MS.gene056338:intron 25.0%
! CAATCAGAGAGATATTTAAA+GGG - chr4.1:34843579-34843598 None:intergenic 25.0%
! CAGTTTACCTATACAATATA+TGG + chr4.1:34845349-34845368 MS.gene056338:intron 25.0%
! CATAAAATTCAAGCTATGAA+TGG - chr4.1:34841713-34841732 None:intergenic 25.0%
! CATAATAAAACTCCATTGTT+TGG + chr4.1:34842343-34842362 MS.gene056338:intron 25.0%
! CATATATTGTATAGGTAAAC+TGG - chr4.1:34845351-34845370 None:intergenic 25.0%
! CCAATTAAATAATTTCCTAG+TGG - chr4.1:34843519-34843538 None:intergenic 25.0%
! CCACTAGGAAATTATTTAAT+TGG + chr4.1:34843516-34843535 MS.gene056338:intron 25.0%
! CCATAGAATGATATATTTGA+CGG + chr4.1:34844864-34844883 MS.gene056338:intron 25.0%
! CTATAAAGTAAACGTTAGAA+GGG - chr4.1:34842685-34842704 None:intergenic 25.0%
! GACATGAGTAAAATGATTAT+GGG + chr4.1:34842638-34842657 MS.gene056338:intron 25.0%
! GTTTACCTATACAATATATG+GGG + chr4.1:34845351-34845370 MS.gene056338:intron 25.0%
! TAACAGCTAATGAACATTTA+CGG - chr4.1:34843166-34843185 None:intergenic 25.0%
! TAAGAGACTTTATGGTTTAA+GGG + chr4.1:34841529-34841548 MS.gene056338:intron 25.0%
! TAATCATAAATTCATCCACT+AGG + chr4.1:34843501-34843520 MS.gene056338:intron 25.0%
! TTAAACAATGGAATGGTAAT+TGG + chr4.1:34842505-34842524 MS.gene056338:intron 25.0%
! TTGAATACCTGATCAAATAA+GGG - chr4.1:34844136-34844155 None:intergenic 25.0%
! TTTGAATACCTGATCAAATA+AGG - chr4.1:34844137-34844156 None:intergenic 25.0%
!! AAATCAATTTTGTGCATGTT+TGG + chr4.1:34842130-34842149 MS.gene056338:intron 25.0%
!! AAATCTGTGATACAACATTT+TGG + chr4.1:34844781-34844800 MS.gene056338:intron 25.0%
!! CTACATTTTCAACAAAATCA+AGG - chr4.1:34842169-34842188 None:intergenic 25.0%
!! GAGATAAAGTTTTCAAAATC+GGG + chr4.1:34843001-34843020 MS.gene056338:intron 25.0%
!! GTTGAGGTAAATGTTTATTT+TGG + chr4.1:34841888-34841907 MS.gene056338:intron 25.0%
!! TGATTTGTAACTAAAATGCA+TGG + chr4.1:34842943-34842962 MS.gene056338:intron 25.0%
!! TTTAGTTTCTTGATTTCACA+GGG + chr4.1:34843032-34843051 MS.gene056338:intron 25.0%
!! TTTTACCATTTTACAACAGA+CGG - chr4.1:34845403-34845422 None:intergenic 25.0%
!!! TTTCTACATAGAGCATTTTT+AGG - chr4.1:34843608-34843627 None:intergenic 25.0%
AAATATCTCTCTGATTGCAT+AGG + chr4.1:34843582-34843601 MS.gene056338:intron 30.0%
AAATTAATCCACGACTTTGT+AGG - chr4.1:34841571-34841590 None:intergenic 30.0%
AAGGATTGATTGAAATACGA+GGG + chr4.1:34842366-34842385 MS.gene056338:intron 30.0%
AATTAATCCACGACTTTGTA+GGG - chr4.1:34841570-34841589 None:intergenic 30.0%
AGACTAAACAACATCTATAG+AGG + chr4.1:34842025-34842044 MS.gene056338:intron 30.0%
AGAGAAGATACGTTGAATTA+AGG - chr4.1:34845197-34845216 None:intergenic 30.0%
AGATGAATTGAAGTTTCCTA+AGG + chr4.1:34845593-34845612 MS.gene056338:CDS 30.0%
AGTTCAGAAAACTAAATACC+TGG - chr4.1:34845007-34845026 None:intergenic 30.0%
ATAAAACTCCATTGTTTGGA+AGG + chr4.1:34842347-34842366 MS.gene056338:intron 30.0%
ATAAGAACCATAATAGCAAG+GGG - chr4.1:34844536-34844555 None:intergenic 30.0%
ATATATCCAAAAACAGCCTT+AGG + chr4.1:34842579-34842598 MS.gene056338:intron 30.0%
ATGAACGCATATGAAATGAA+TGG - chr4.1:34845451-34845470 None:intergenic 30.0%
CAAATATGATACAGGATTGA+TGG + chr4.1:34842307-34842326 MS.gene056338:intron 30.0%
CACAGATTTCTCTTAAGATA+AGG - chr4.1:34844770-34844789 None:intergenic 30.0%
CATGTCATAATTACAACAGT+TGG - chr4.1:34844184-34844203 None:intergenic 30.0%
CCGTCAAATATATCATTCTA+TGG - chr4.1:34844867-34844886 None:intergenic 30.0%
CTAAATGTACACTTTATAGC+TGG + chr4.1:34844685-34844704 MS.gene056338:intron 30.0%
CTGTAACTTAACTCAATTGT+AGG + chr4.1:34843140-34843159 MS.gene056338:intron 30.0%
GCAATCAGAGAGATATTTAA+AGG - chr4.1:34843580-34843599 None:intergenic 30.0%
GCTATAAAGTAAACGTTAGA+AGG - chr4.1:34842686-34842705 None:intergenic 30.0%
GTAAGAGACTTTATGGTTTA+AGG + chr4.1:34841528-34841547 MS.gene056338:intron 30.0%
TAATTATGACATGCAAGTTC+AGG + chr4.1:34844191-34844210 MS.gene056338:intron 30.0%
TAGTAGAGTAAGAGACTTTA+TGG + chr4.1:34841521-34841540 MS.gene056338:intron 30.0%
TAGTATTTGGGAAAATTCAC+CGG + chr4.1:34843254-34843273 MS.gene056338:intron 30.0%
TATATCCAAAAACAGCCTTA+GGG + chr4.1:34842580-34842599 MS.gene056338:intron 30.0%
TATGCCTGTAAAGAAAAGTA+GGG + chr4.1:34843302-34843321 MS.gene056338:intron 30.0%
TCAATCCTGTATCATATTTG+AGG - chr4.1:34842307-34842326 None:intergenic 30.0%
TCTTGAATTTGATGTGTCAA+AGG + chr4.1:34841201-34841220 MS.gene056338:CDS 30.0%
TGAAAATGGAGAGTTTAAAG+AGG + chr4.1:34841021-34841040 MS.gene056338:CDS 30.0%
TTAATACATGGCAAGATGAT+TGG + chr4.1:34841410-34841429 MS.gene056338:intron 30.0%
TTAGTTTCTTGATTTCACAG+GGG + chr4.1:34843033-34843052 MS.gene056338:intron 30.0%
TTCTATAGGCTATAGTTCTT+CGG - chr4.1:34845168-34845187 None:intergenic 30.0%
TTGGATATGGGGATTATTAT+GGG + chr4.1:34841055-34841074 MS.gene056338:CDS 30.0%
TTGTTCTTCAAAGTTCAAAG+AGG - chr4.1:34842974-34842993 None:intergenic 30.0%
TTTGGATATGGGGATTATTA+TGG + chr4.1:34841054-34841073 MS.gene056338:CDS 30.0%
! ATGGTAAAATTTTATGCGCA+CGG + chr4.1:34845414-34845433 MS.gene056338:intron 30.0%
! ATTTGTAGACTGCATTTTAG+AGG + chr4.1:34845629-34845648 MS.gene056338:CDS 30.0%
! CTTTATAGCTTTTACACTGT+AGG + chr4.1:34842697-34842716 MS.gene056338:intron 30.0%
! CTTTTCTTCTCTTCCATTAA+CGG + chr4.1:34842442-34842461 MS.gene056338:intron 30.0%
! GTTTAGTTTCTTGATTTCAC+AGG + chr4.1:34843031-34843050 MS.gene056338:intron 30.0%
! TACAAAGTCGTGGATTAATT+TGG + chr4.1:34841570-34841589 MS.gene056338:intron 30.0%
!! ACTCTATTTCTATTGGACAT+CGG - chr4.1:34841376-34841395 None:intergenic 30.0%
!! ATTCCTGACTATTGTTTTAC+TGG + chr4.1:34844283-34844302 MS.gene056338:CDS 30.0%
!! GGTCATTTTCTTTTGTTTGA+AGG + chr4.1:34845554-34845573 MS.gene056338:intron 30.0%
!! TTATATACCCCTTGCTATTA+TGG + chr4.1:34844526-34844545 MS.gene056338:intron 30.0%
!!! GGCTGTTTTTGGATATATAA+CGG - chr4.1:34842577-34842596 None:intergenic 30.0%
AAAAATGCTGCGTACATTAC+CGG + chr4.1:34844837-34844856 MS.gene056338:intron 35.0%
AAAACAATTACGCGCATGTT+TGG - chr4.1:34842228-34842247 None:intergenic 35.0%
AAAGCATGATTTCTGAGTAG+GGG - chr4.1:34844974-34844993 None:intergenic 35.0%
AAAGGATCTGAGTATCAATG+GGG - chr4.1:34843085-34843104 None:intergenic 35.0%
AAGGTGAGAGTTTAATCCAA+AGG - chr4.1:34843103-34843122 None:intergenic 35.0%
AATGACAGGGTAAAAGTTCT+AGG - chr4.1:34843632-34843651 None:intergenic 35.0%
AATGGAAGAGAAGAAAAGCA+AGG - chr4.1:34842440-34842459 None:intergenic 35.0%
AATGGCAGATAAATGAGCTT+CGG + chr4.1:34844248-34844267 MS.gene056338:intron 35.0%
AATTACAGTATAAAGACGGG+AGG - chr4.1:34843857-34843876 None:intergenic 35.0%
AATTTGATGTGTCAAAGGTG+AGG + chr4.1:34841206-34841225 MS.gene056338:intron 35.0%
ACAAGAGTAATTACCTCAAC+CGG - chr4.1:34842923-34842942 None:intergenic 35.0%
ACACTGTCAATGCATAGTTA+TGG + chr4.1:34841464-34841483 MS.gene056338:intron 35.0%
ACAGGATTGATGGAATGAAA+TGG + chr4.1:34842317-34842336 MS.gene056338:intron 35.0%
ACATCATAACATTCTAGCAC+AGG + chr4.1:34844378-34844397 MS.gene056338:CDS 35.0%
ACTCTACTAAACTGTCAAGT+TGG - chr4.1:34841510-34841529 None:intergenic 35.0%
AGTATTTGGGAAAATTCACC+GGG + chr4.1:34843255-34843274 MS.gene056338:intron 35.0%
AGTGATATTCTTCCAAGCAA+AGG - chr4.1:34845123-34845142 None:intergenic 35.0%
ATATGGGGATTATTATGGGT+GGG + chr4.1:34841059-34841078 MS.gene056338:CDS 35.0%
ATTACAGTATAAAGACGGGA+GGG - chr4.1:34843856-34843875 None:intergenic 35.0%
ATTTGTTTGGTTGCAACAGT+TGG + chr4.1:34843674-34843693 MS.gene056338:intron 35.0%
CAAAGCATGATTTCTGAGTA+GGG - chr4.1:34844975-34844994 None:intergenic 35.0%
CAAAGGATCTGAGTATCAAT+GGG - chr4.1:34843086-34843105 None:intergenic 35.0%
CAATCAATCCTTCCAAACAA+TGG - chr4.1:34842358-34842377 None:intergenic 35.0%
CAATGCATAGTTATGGTAAG+TGG + chr4.1:34841471-34841490 MS.gene056338:intron 35.0%
CCAAAAGCTAACTGATAAAC+TGG - chr4.1:34845712-34845731 None:intergenic 35.0%
CCATACCCCATATATTGTAT+AGG - chr4.1:34845359-34845378 None:intergenic 35.0%
CCTATACAATATATGGGGTA+TGG + chr4.1:34845356-34845375 MS.gene056338:intron 35.0%
CTTGATCGGATAAGATCTAA+AGG + chr4.1:34844073-34844092 MS.gene056338:CDS 35.0%
CTTTAGATCTTATCCGATCA+AGG - chr4.1:34844075-34844094 None:intergenic 35.0%
GAAGGATTGATTGAAATACG+AGG + chr4.1:34842365-34842384 MS.gene056338:intron 35.0%
GAATGTTATGATGTGGATCA+TGG - chr4.1:34844372-34844391 None:intergenic 35.0%
GCAGTTTGAGCAAAAAGTAA+CGG + chr4.1:34843277-34843296 MS.gene056338:intron 35.0%
GTATGCCTGTAAAGAAAAGT+AGG + chr4.1:34843301-34843320 MS.gene056338:intron 35.0%
GTCATCCTCAAATATGATAC+AGG + chr4.1:34842299-34842318 MS.gene056338:intron 35.0%
GTTCTTCGGTCATTCAAAAT+AGG - chr4.1:34845097-34845116 None:intergenic 35.0%
TATATCATTCTATGGTGCAC+CGG - chr4.1:34844859-34844878 None:intergenic 35.0%
TCAGGATTTGTCACAGAATA+GGG - chr4.1:34843721-34843740 None:intergenic 35.0%
TGAGTAAAATGATTATGGGG+TGG + chr4.1:34842642-34842661 MS.gene056338:intron 35.0%
TGCATCTCACAACTTTATGT+GGG + chr4.1:34841764-34841783 MS.gene056338:intron 35.0%
TGTAAAGAAAAGTAGGGTGA+GGG + chr4.1:34843308-34843327 MS.gene056338:intron 35.0%
TGTGCTAGAATGTTATGATG+TGG - chr4.1:34844379-34844398 None:intergenic 35.0%
TGTTGAACTGAAACTGGAAA+TGG + chr4.1:34843765-34843784 MS.gene056338:intron 35.0%
TTCTTCAAAGTTCAAAGAGG+AGG - chr4.1:34842971-34842990 None:intergenic 35.0%
TTGATTGAAATACGAGGGAA+AGG + chr4.1:34842371-34842390 MS.gene056338:intron 35.0%
TTGTTGGGAAAAAATACGTC+AGG + chr4.1:34844916-34844935 MS.gene056338:CDS 35.0%
! ATTTTTACAGCTCGGACTAA+TGG - chr4.1:34841439-34841458 None:intergenic 35.0%
! CGGTTTCTGACATTTTTGAA+TGG + chr4.1:34844230-34844249 MS.gene056338:intron 35.0%
! GTAAAACTAGTTTACACCCA+CGG - chr4.1:34841352-34841371 None:intergenic 35.0%
! TTATTCCAGTTTTTCTTGGC+TGG - chr4.1:34842860-34842879 None:intergenic 35.0%
! TTTCTTTCTCTACTCTGAGA+TGG - chr4.1:34841321-34841340 None:intergenic 35.0%
! TTTGTGCATGTTTGGAATCA+CGG + chr4.1:34842138-34842157 MS.gene056338:intron 35.0%
!! AATGGGAGGTGTAAAGATTT+TGG + chr4.1:34841154-34841173 MS.gene056338:CDS 35.0%
!! ACTATTGTTTTACTGGTGGA+GGG + chr4.1:34844290-34844309 MS.gene056338:CDS 35.0%
!! AGGATGGTTAAGGTTGATAA+TGG + chr4.1:34841136-34841155 MS.gene056338:CDS 35.0%
!! GGATGGTTAAGGTTGATAAT+GGG + chr4.1:34841137-34841156 MS.gene056338:CDS 35.0%
!! TGTGTAAAGTGCTGTGAAAT+AGG + chr4.1:34841254-34841273 MS.gene056338:intron 35.0%
!!! ATGTTTTGACCACAGAGTTT+GGG - chr4.1:34842269-34842288 None:intergenic 35.0%
!!! CCAGTTTATCAGTTAGCTTT+TGG + chr4.1:34845709-34845728 MS.gene056338:CDS 35.0%
!!! GTTTATCAGTTAGCTTTTGG+TGG + chr4.1:34845712-34845731 MS.gene056338:CDS 35.0%
!!! TATGTTTTGACCACAGAGTT+TGG - chr4.1:34842270-34842289 None:intergenic 35.0%
AACATGATTTAACTCTGGGC+AGG - chr4.1:34844508-34844527 None:intergenic 40.0%
AATTCCAAGTCTTGCACCTT+AGG - chr4.1:34845612-34845631 None:intergenic 40.0%
ACATGATTTAACTCTGGGCA+GGG - chr4.1:34844507-34844526 None:intergenic 40.0%
AGAAAGAAAGATGTACACCG+TGG + chr4.1:34841332-34841351 MS.gene056338:intron 40.0%
AGATCTCTCAATGCTTGGTT+TGG + chr4.1:34844319-34844338 MS.gene056338:CDS 40.0%
AGCGATATTCTTCCAAGCAA+AGG - chr4.1:34845066-34845085 None:intergenic 40.0%
AGCTAAGATCTCTCAATGCT+TGG + chr4.1:34844314-34844333 MS.gene056338:CDS 40.0%
AGGATTTGTCACAGAATAGG+GGG - chr4.1:34843719-34843738 None:intergenic 40.0%
ATGGCACTACAAGTCTACAA+CGG + chr4.1:34841846-34841865 MS.gene056338:intron 40.0%
CACTTGACAGATGAATGACA+GGG - chr4.1:34843645-34843664 None:intergenic 40.0%
CAGAAAACTAAATACCTGGC+TGG - chr4.1:34845003-34845022 None:intergenic 40.0%
CAGGATTTGTCACAGAATAG+GGG - chr4.1:34843720-34843739 None:intergenic 40.0%
CCAAAGGATCTGAGTATCAA+TGG - chr4.1:34843087-34843106 None:intergenic 40.0%
CCAAGTTGTTGAACTGAAAC+TGG + chr4.1:34843759-34843778 MS.gene056338:intron 40.0%
CCACCAGTAAAACAATAGTC+AGG - chr4.1:34844289-34844308 None:intergenic 40.0%
CCAGTTTCAGTTCAACAACT+TGG - chr4.1:34843762-34843781 None:intergenic 40.0%
CCATTGATACTCAGATCCTT+TGG + chr4.1:34843084-34843103 MS.gene056338:intron 40.0%
CGGTGAGTTTCAGAAAATCA+CGG - chr4.1:34842200-34842219 None:intergenic 40.0%
CTGAACGAAAGGGGATTTAT+TGG - chr4.1:34842545-34842564 None:intergenic 40.0%
CTGACATCTGAATGAAGTTG+AGG + chr4.1:34841872-34841891 MS.gene056338:intron 40.0%
CTGTAAAGAAAAGTAGGGTG+AGG + chr4.1:34843307-34843326 MS.gene056338:intron 40.0%
CTTCCTGAAAGATCATTACC+TGG + chr4.1:34842793-34842812 MS.gene056338:CDS 40.0%
GAAAGAAAGATGTACACCGT+GGG + chr4.1:34841333-34841352 MS.gene056338:intron 40.0%
GATATGGGGATTATTATGGG+TGG + chr4.1:34841058-34841077 MS.gene056338:CDS 40.0%
GATTACTTGCAAAGAGTTGC+TGG + chr4.1:34842884-34842903 MS.gene056338:CDS 40.0%
GCAAAGCATGATTTCTGAGT+AGG - chr4.1:34844976-34844995 None:intergenic 40.0%
GTCAGGATTTGTCACAGAAT+AGG - chr4.1:34843722-34843741 None:intergenic 40.0%
GTGCATCTCACAACTTTATG+TGG + chr4.1:34841763-34841782 MS.gene056338:intron 40.0%
GTTTCAGTTCAACAACTTGG+TGG - chr4.1:34843759-34843778 None:intergenic 40.0%
TCACTTGACAGATGAATGAC+AGG - chr4.1:34843646-34843665 None:intergenic 40.0%
TGATGTGGATCATGGTGTAA+TGG - chr4.1:34844364-34844383 None:intergenic 40.0%
TGGCTAAAACAGAATCTGTC+AGG - chr4.1:34843739-34843758 None:intergenic 40.0%
TGTTATATATCCCGCCAAAG+TGG + chr4.1:34845661-34845680 MS.gene056338:CDS 40.0%
TTACACACCTATACATGCAG+AGG - chr4.1:34845269-34845288 None:intergenic 40.0%
TTACAGTATAAAGACGGGAG+GGG - chr4.1:34843855-34843874 None:intergenic 40.0%
TTATCCAGCATCTTTGTCTG+AGG + chr4.1:34844941-34844960 MS.gene056338:CDS 40.0%
TTCTGCTGTTGTGAAGGTTT+CGG + chr4.1:34841105-34841124 MS.gene056338:CDS 40.0%
TTTCACACTTCCAGGTTGTT+GGG + chr4.1:34844901-34844920 MS.gene056338:intron 40.0%
TTTCTCTCCTCTGCATGTAT+AGG + chr4.1:34845259-34845278 MS.gene056338:intron 40.0%
TTTGGATTCTGCTGTTGTGA+AGG + chr4.1:34841099-34841118 MS.gene056338:CDS 40.0%
! AAATCTGTCTTCGTGTTGAC+TGG + chr4.1:34845533-34845552 MS.gene056338:intron 40.0%
! AGATCTAAAGGCTTTTCTCC+TGG + chr4.1:34844085-34844104 MS.gene056338:CDS 40.0%
! ATAGGGAAGAAGCATGAATC+TGG - chr4.1:34844645-34844664 None:intergenic 40.0%
! CAGGACTTTTACTGCTCTTT+CGG + chr4.1:34844210-34844229 MS.gene056338:intron 40.0%
! CGTTTTCTGAGTTCCTTGAT+CGG + chr4.1:34844059-34844078 MS.gene056338:CDS 40.0%
! GAGTTTGCTTAGGAAGGATT+TGG + chr4.1:34841081-34841100 MS.gene056338:CDS 40.0%
! TCAGCATCCCTTATTTGATC+AGG + chr4.1:34844126-34844145 MS.gene056338:CDS 40.0%
! TTTGAAGCAAGGGACTTAAC+AGG - chr4.1:34842737-34842756 None:intergenic 40.0%
!! AGAGTTTAAAGAGGCGCTTA+GGG + chr4.1:34841030-34841049 MS.gene056338:CDS 40.0%
!! ATGTCTTGTTTCACACTTCC+AGG + chr4.1:34844893-34844912 MS.gene056338:intron 40.0%
!! CACTACAAGCTTTGAAGCAA+GGG - chr4.1:34842747-34842766 None:intergenic 40.0%
!! CCTGACTATTGTTTTACTGG+TGG + chr4.1:34844286-34844305 MS.gene056338:CDS 40.0%
!! CTATTGTTTTACTGGTGGAG+GGG + chr4.1:34844291-34844310 MS.gene056338:CDS 40.0%
!! CTCACCCTACTTTTCTTTAC+AGG - chr4.1:34843309-34843328 None:intergenic 40.0%
!! GACTATTGTTTTACTGGTGG+AGG + chr4.1:34844289-34844308 MS.gene056338:CDS 40.0%
!! GCGAAGTGTTGCTATGAAAA+TGG + chr4.1:34841007-34841026 MS.gene056338:CDS 40.0%
!! GTAGACTGCATTTTAGAGGA+AGG + chr4.1:34845633-34845652 MS.gene056338:CDS 40.0%
!! TACTTTTTGCTCAAACTGCC+CGG - chr4.1:34843276-34843295 None:intergenic 40.0%
!! TCACTACAAGCTTTGAAGCA+AGG - chr4.1:34842748-34842767 None:intergenic 40.0%
!! TGGTTAAGGTTGATAATGGG+AGG + chr4.1:34841140-34841159 MS.gene056338:CDS 40.0%
!!! CGTATTTTTTCCCAACAACC+TGG - chr4.1:34844914-34844933 None:intergenic 40.0%
AAGTTGGACTCATGGGAGTA+TGG - chr4.1:34844602-34844621 None:intergenic 45.0%
ACACTTTATAGCTGGCAACC+TGG + chr4.1:34844693-34844712 MS.gene056338:intron 45.0%
ACAGGGGAAAACAGATAGCT+GGG + chr4.1:34843049-34843068 MS.gene056338:intron 45.0%
AGAGTGAAGCTGAACGAAAG+GGG - chr4.1:34842554-34842573 None:intergenic 45.0%
AGTTATCATCAGCGACTGCA+TGG + chr4.1:34842826-34842845 MS.gene056338:CDS 45.0%
AGTTCCTCAGACAAAGATGC+TGG - chr4.1:34844948-34844967 None:intergenic 45.0%
ATGCAGTCGCTGATGATAAC+TGG - chr4.1:34842827-34842846 None:intergenic 45.0%
ATTTGTCACAGAATAGGGGG+AGG - chr4.1:34843716-34843735 None:intergenic 45.0%
CAAGCAAAGGCTTAAGCAGA+CGG - chr4.1:34845053-34845072 None:intergenic 45.0%
CAGCCAGGTAATGATCTTTC+AGG - chr4.1:34842799-34842818 None:intergenic 45.0%
CGAAAGGGGATTTATTGGAG+TGG - chr4.1:34842540-34842559 None:intergenic 45.0%
CGACTCCGTCTGTTGTAAAA+TGG + chr4.1:34845395-34845414 MS.gene056338:intron 45.0%
CTGAAAGATCATTACCTGGC+TGG + chr4.1:34842797-34842816 MS.gene056338:CDS 45.0%
GAAATACGAGGGAAAGGAGT+GGG + chr4.1:34842377-34842396 MS.gene056338:intron 45.0%
GAGAGTGAAGCTGAACGAAA+GGG - chr4.1:34842555-34842574 None:intergenic 45.0%
GGATGCTGAGCAAGATATGT+AGG - chr4.1:34844115-34844134 None:intergenic 45.0%
GGGACTTAACAGGCAAAAGT+TGG - chr4.1:34842727-34842746 None:intergenic 45.0%
GTAACAGTACTTGCCGAAGT+TGG - chr4.1:34844618-34844637 None:intergenic 45.0%
GTTTCACACTTCCAGGTTGT+TGG + chr4.1:34844900-34844919 MS.gene056338:intron 45.0%
GTTTCCTAAGGTGCAAGACT+TGG + chr4.1:34845605-34845624 MS.gene056338:CDS 45.0%
TACATCAACTATGCCATGCC+AGG - chr4.1:34844714-34844733 None:intergenic 45.0%
TACGCGCATGTTTGGATTTG+CGG - chr4.1:34842220-34842239 None:intergenic 45.0%
TACTCCCATGAGTCCAACTT+CGG + chr4.1:34844602-34844621 MS.gene056338:intron 45.0%
TATATATCCCGCCAAAGTGG+TGG + chr4.1:34845664-34845683 MS.gene056338:CDS 45.0%
TGAAATACGAGGGAAAGGAG+TGG + chr4.1:34842376-34842395 MS.gene056338:intron 45.0%
TTCCCAACCTGCAAAGAATG+CGG - chr4.1:34844001-34844020 None:intergenic 45.0%
TTTGTCACAGAATAGGGGGA+GGG - chr4.1:34843715-34843734 None:intergenic 45.0%
! AGTTGGACTCATGGGAGTAT+GGG - chr4.1:34844601-34844620 None:intergenic 45.0%
! CCAAGCAAAGGCTTGTTCTT+CGG - chr4.1:34845111-34845130 None:intergenic 45.0%
! GAAGAAGCATGAATCTGGCT+CGG - chr4.1:34844640-34844659 None:intergenic 45.0%
! TCTAAAGGCTTTTCTCCTGG+TGG + chr4.1:34844088-34844107 MS.gene056338:CDS 45.0%
! TTATGGGTGGGAGTTTGCTT+AGG + chr4.1:34841071-34841090 MS.gene056338:CDS 45.0%
! TTTTACAACAGACGGAGTCG+TGG - chr4.1:34845395-34845414 None:intergenic 45.0%
!! GAGAGTTTAAAGAGGCGCTT+AGG + chr4.1:34841029-34841048 MS.gene056338:CDS 45.0%
!! GGGAGGTGTAAAGATTTTGG+TGG + chr4.1:34841157-34841176 MS.gene056338:CDS 45.0%
!!! AGTTAGCTTTTGGTGGAGTG+AGG + chr4.1:34845719-34845738 MS.gene056338:CDS 45.0%
!!! GTTAGCTTTTGGTGGAGTGA+GGG + chr4.1:34845720-34845739 MS.gene056338:CDS 45.0%
AAGTGTGCCGCATTCTTTGC+AGG + chr4.1:34843991-34844010 MS.gene056338:intron 50.0%
AATGGCGTTACAGTTCCAGC+TGG - chr4.1:34844346-34844365 None:intergenic 50.0%
ACATAGTGCCACCACTTTGG+CGG - chr4.1:34845675-34845694 None:intergenic 50.0%
ACTGGCCAGCCAAGAAAAAC+TGG + chr4.1:34842852-34842871 MS.gene056338:CDS 50.0%
ACTTGCCGAAGTTGGACTCA+TGG - chr4.1:34844610-34844629 None:intergenic 50.0%
ATGTCAAGGCCCAAACTCTG+TGG + chr4.1:34842257-34842276 MS.gene056338:intron 50.0%
CACAGGGGAAAACAGATAGC+TGG + chr4.1:34843048-34843067 MS.gene056338:intron 50.0%
CAGGAAGTTCTCCAGTGACA+AGG - chr4.1:34842780-34842799 None:intergenic 50.0%
CATCTCACGAACTGCTTCTG+CGG - chr4.1:34840903-34840922 None:intergenic 50.0%
CATGCTTTGCAATTCCAGCC+AGG + chr4.1:34844986-34845005 MS.gene056338:CDS 50.0%
CCGAAGAACAAGCCTTTGCT+TGG + chr4.1:34845108-34845127 MS.gene056338:intron 50.0%
CGTCTGCTTAAGCCTTTGCT+TGG + chr4.1:34845051-34845070 MS.gene056338:intron 50.0%
CTTGCCGAAGTTGGACTCAT+GGG - chr4.1:34844609-34844628 None:intergenic 50.0%
GAAGAGATCTGCCTTGTCAC+TGG + chr4.1:34842766-34842785 MS.gene056338:CDS 50.0%
GCAAGATATGTAGGACCACC+AGG - chr4.1:34844106-34844125 None:intergenic 50.0%
GGAGAAAGCGAGGATGGTTA+AGG + chr4.1:34841126-34841145 MS.gene056338:CDS 50.0%
GGAGAGTGAAGCTGAACGAA+AGG - chr4.1:34842556-34842575 None:intergenic 50.0%
GGAGATTCTGCATCGAGTGT+TGG - chr4.1:34840797-34840816 None:intergenic 50.0%
GGGAAAGGAGTGGGATATGA+TGG + chr4.1:34842386-34842405 MS.gene056338:intron 50.0%
TGAAGGTTTCGGAGAAAGCG+AGG + chr4.1:34841116-34841135 MS.gene056338:CDS 50.0%
TGCCGCATTCTTTGCAGGTT+GGG + chr4.1:34843996-34844015 MS.gene056338:intron 50.0%
TGTTTGGAGAGAGTCGCTGA+TGG - chr4.1:34840774-34840793 None:intergenic 50.0%
TTAAACACTCACCTCGCCCT+AGG + chr4.1:34844481-34844500 MS.gene056338:intron 50.0%
TTACCTCAACCGGAACAGTG+CGG - chr4.1:34842913-34842932 None:intergenic 50.0%
TTATAGCTGGCAACCTGGCA+TGG + chr4.1:34844698-34844717 MS.gene056338:intron 50.0%
TTGTCACAGAATAGGGGGAG+GGG - chr4.1:34843714-34843733 None:intergenic 50.0%
! GTGCATGTTTGGAATCACGG+TGG + chr4.1:34842141-34842160 MS.gene056338:intron 50.0%
!! AAGCACAGAAGAGCACCCTA+AGG - chr4.1:34842598-34842617 None:intergenic 50.0%
!! AATGCTTGGTTTGGTCCAGC+TGG + chr4.1:34844328-34844347 MS.gene056338:CDS 50.0%
!! CGCTTAGGGCTTTGGATATG+GGG + chr4.1:34841044-34841063 MS.gene056338:CDS 50.0%
!! CTGCATCGAGTGTTGGTGTT+TGG - chr4.1:34840790-34840809 None:intergenic 50.0%
!! GAGAGTACCCTACAAAGTCG+TGG + chr4.1:34841560-34841579 MS.gene056338:intron 50.0%
!! GAGCACCCTAAGGCTGTTTT+TGG - chr4.1:34842588-34842607 None:intergenic 50.0%
!! GCGCTTAGGGCTTTGGATAT+GGG + chr4.1:34841043-34841062 MS.gene056338:CDS 50.0%
!! TAAAGAGGCGCTTAGGGCTT+TGG + chr4.1:34841036-34841055 MS.gene056338:CDS 50.0%
AAGCAGTTCGTGAGATGGCG+TGG + chr4.1:34840906-34840925 MS.gene056338:CDS 55.0%
AGCAGTTCGTGAGATGGCGT+GGG + chr4.1:34840907-34840926 MS.gene056338:CDS 55.0%
CAGTATAAAGACGGGAGGGG+AGG - chr4.1:34843852-34843871 None:intergenic 55.0%
CATAGTGCCACCACTTTGGC+GGG - chr4.1:34845674-34845693 None:intergenic 55.0%
CGCACATAGTGCCACCACTT+TGG - chr4.1:34845678-34845697 None:intergenic 55.0%
CGCAGAAGCAGTTCGTGAGA+TGG + chr4.1:34840901-34840920 MS.gene056338:CDS 55.0%
CTCCACTCCATCTCATCCCA+CGG + chr4.1:34840824-34840843 MS.gene056338:CDS 55.0%
GGTTTCGGAGAAAGCGAGGA+TGG + chr4.1:34841120-34841139 MS.gene056338:CDS 55.0%
GTGCCGCATTCTTTGCAGGT+TGG + chr4.1:34843995-34844014 MS.gene056338:intron 55.0%
TGAGATGGAGTGGAGGAGTG+TGG - chr4.1:34840819-34840838 None:intergenic 55.0%
TGATAACTGGAGAGCCAGCC+AGG - chr4.1:34842814-34842833 None:intergenic 55.0%
TTAACTCTGGGCAGGGCCTA+GGG - chr4.1:34844500-34844519 None:intergenic 55.0%
TTTAACTCTGGGCAGGGCCT+AGG - chr4.1:34844501-34844520 None:intergenic 55.0%
! AGAGTCGCTGATGGATGAGG+TGG - chr4.1:34840765-34840784 None:intergenic 55.0%
! GAGAGAGTCGCTGATGGATG+AGG - chr4.1:34840768-34840787 None:intergenic 55.0%
! GAGATGGAGTGGAGGAGTGT+GGG - chr4.1:34840818-34840837 None:intergenic 55.0%
! GGGTGGGAGTTTGCTTAGGA+AGG + chr4.1:34841075-34841094 MS.gene056338:CDS 55.0%
!! GGCGCTTAGGGCTTTGGATA+TGG + chr4.1:34841042-34841061 MS.gene056338:CDS 55.0%
CAACACCGAGTGCCAAGGAC+CGG - chr4.1:34840945-34840964 None:intergenic 60.0%
CACTCCATCTCATCCCACGG+AGG + chr4.1:34840827-34840846 MS.gene056338:CDS 60.0%
CGTGGGATGAGATGGAGTGG+AGG - chr4.1:34840826-34840845 None:intergenic 60.0%
CTCCGTGGGATGAGATGGAG+TGG - chr4.1:34840829-34840848 None:intergenic 60.0%
GAGGGAGGACATACGGACGT+AGG - chr4.1:34840858-34840877 None:intergenic 60.0%
GTAGCCTCCGTGGGATGAGA+TGG - chr4.1:34840834-34840853 None:intergenic 60.0%
TGACCGCACTGTTCCGGTTG+AGG + chr4.1:34842907-34842926 MS.gene056338:CDS 60.0%
TGCTGGTGACCGCACTGTTC+CGG + chr4.1:34842901-34842920 MS.gene056338:CDS 60.0%
!! TCCTTGGCACTCGGTGTTGC+CGG + chr4.1:34840946-34840965 MS.gene056338:CDS 60.0%
ACCGGCAACACCGAGTGCCA+AGG - chr4.1:34840950-34840969 None:intergenic 65.0%
AGCAGCTGCACTCCGGTCCT+TGG + chr4.1:34840930-34840949 MS.gene056338:CDS 65.0%
GACGTAGGCGTAGCCTCCGT+GGG - chr4.1:34840843-34840862 None:intergenic 65.0%
GAGTACGCGTCACGCCACAC+CGG - chr4.1:34840968-34840987 None:intergenic 65.0%
GCACTCCGGTCCTTGGCACT+CGG + chr4.1:34840937-34840956 MS.gene056338:CDS 65.0%
GTGGCGTGACGCGTACTCGA+TGG + chr4.1:34840970-34840989 MS.gene056338:CDS 65.0%
TCAGCGACTGCATGGCGCAC+TGG + chr4.1:34842834-34842853 MS.gene056338:CDS 65.0%
TTCTGCGGCGCGAATGTCGC+CGG - chr4.1:34840888-34840907 None:intergenic 65.0%
CGGCGGCGAGGGAGGACATA+CGG - chr4.1:34840865-34840884 None:intergenic 70.0%
GCGTGGGAGCAGCTGCACTC+CGG + chr4.1:34840923-34840942 MS.gene056338:CDS 70.0%
GGACGTAGGCGTAGCCTCCG+TGG - chr4.1:34840844-34840863 None:intergenic 70.0%
!! GGCACTCGGTGTTGCCGGTG+TGG + chr4.1:34840951-34840970 MS.gene056338:CDS 70.0%
AATGTCGCCGGCGGCGGCGA+GGG - chr4.1:34840876-34840895 None:intergenic 75.0%
ATGTCCTCCCTCGCCGCCGC+CGG + chr4.1:34840866-34840885 MS.gene056338:CDS 75.0%
TCTGGGCAGGGCCTAGGGCG+AGG - chr4.1:34844495-34844514 None:intergenic 75.0%
TGCGGCGCGAATGTCGCCGG+CGG - chr4.1:34840885-34840904 None:intergenic 75.0%
! GAATGTCGCCGGCGGCGGCG+AGG - chr4.1:34840877-34840896 None:intergenic 80.0%
! GGCGCGAATGTCGCCGGCGG+CGG - chr4.1:34840882-34840901 None:intergenic 80.0%
! GTCGCCGGCGGCGGCGAGGG+AGG - chr4.1:34840873-34840892 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 34840752 34845764 34840752 ID=MS.gene056338
chr4.1 mRNA 34840752 34845764 34840752 ID=MS.gene056338.t1;Parent=MS.gene056338
chr4.1 exon 34840752 34841222 34840752 ID=MS.gene056338.t1.exon1;Parent=MS.gene056338.t1
chr4.1 CDS 34840752 34841222 34840752 ID=cds.MS.gene056338.t1;Parent=MS.gene056338.t1
chr4.1 exon 34842719 34842928 34842719 ID=MS.gene056338.t1.exon2;Parent=MS.gene056338.t1
chr4.1 CDS 34842719 34842928 34842719 ID=cds.MS.gene056338.t1;Parent=MS.gene056338.t1
chr4.1 exon 34844013 34844147 34844013 ID=MS.gene056338.t1.exon3;Parent=MS.gene056338.t1
chr4.1 CDS 34844013 34844147 34844013 ID=cds.MS.gene056338.t1;Parent=MS.gene056338.t1
chr4.1 exon 34844256 34844399 34844256 ID=MS.gene056338.t1.exon4;Parent=MS.gene056338.t1
chr4.1 CDS 34844256 34844399 34844256 ID=cds.MS.gene056338.t1;Parent=MS.gene056338.t1
chr4.1 exon 34844915 34845007 34844915 ID=MS.gene056338.t1.exon5;Parent=MS.gene056338.t1
chr4.1 CDS 34844915 34845007 34844915 ID=cds.MS.gene056338.t1;Parent=MS.gene056338.t1
chr4.1 exon 34845576 34845764 34845576 ID=MS.gene056338.t1.exon6;Parent=MS.gene056338.t1
chr4.1 CDS 34845576 34845764 34845576 ID=cds.MS.gene056338.t1;Parent=MS.gene056338.t1
Gene Sequence

>MS.gene056338

ATGTCAAAAACCACCTCATCCATCAGCGACTCTCTCCAAACACCAACACTCGATGCAGAATCTCCCACACTCCTCCACTCCATCTCATCCCACGGAGGCTACGCCTACGTCCGTATGTCCTCCCTCGCCGCCGCCGGCGACATTCGCGCCGCAGAAGCAGTTCGTGAGATGGCGTGGGAGCAGCTGCACTCCGGTCCTTGGCACTCGGTGTTGCCGGTGTGGCGTGACGCGTACTCGATGGCGTGTTTGCAAGTTGCGAAGTGTTGCTATGAAAATGGAGAGTTTAAAGAGGCGCTTAGGGCTTTGGATATGGGGATTATTATGGGTGGGAGTTTGCTTAGGAAGGATTTGGATTCTGCTGTTGTGAAGGTTTCGGAGAAAGCGAGGATGGTTAAGGTTGATAATGGGAGGTGTAAAGATTTTGGTGGCTCTGAGCATTTACTTGTTGATCTTGAATTTGATGTGTCAAAGGTGAGGTTCGTTTCTCTTTTTCATAGTTGACTGTGTAAAGTGCTGTGAAATAGGTCGCTAAGATTATGAATATTTCAAATTTTATTTATATTAATCCATCTCAGAGTAGAGAAAGAAAGATGTACACCGTGGGTGTAAACTAGTTTTACACCGATGTCCAATAGAAATAGAGTATTTCTTACTTATATTAATACATGGCAAGATGATTGGTTTCCATTAGTCCGAGCTGTAAAAATATTATACACTGTCAATGCATAGTTATGGTAAGTGGTTAAATATAGAGACCAACTTGACAGTTTAGTAGAGTAAGAGACTTTATGGTTTAAGGGACTTATTTGAGAGTACCCTACAAAGTCGTGGATTAATTTGGTGATTTCCTCTTTTTTTCAATTAATATACTTTGATCAATCCATTCATAGCTTGAATTATATACTTTGAATACCTTTTTTTTTTTTTGGTAGAATATACTTTGAATACTTTGATCAATCCATTCATAGCTTGAATTTTATGAACATTGCTTTTTCATTGAGTATAATCTTTGTGCATCTCACAACTTTATGTGGGACCCACATAGATTTCATCTAATAAAAGAGTGAGCGTTGTAAAGTTAATACTAATCACTAATGGCACTACAAGTCTACAACGGAATCTGACATCTGAATGAAGTTGAGGTAAATGTTTATTTTGGTTATGCCATAGCAAAAATGTATTTTGAACGAATTGATTTAGGTCAAAAAAATTGAAAGTAAATTTATTTATATTTTGATGCATTTATGTGAAAGTAAGTTGAACAAAAACTTTGAGACTAAACAACATCTATAGAGGCAAAAGCTACGAATCTCAGTTTCAAGTTAAAATTCATTTAATAGCTAAAAGCAATTCTATTAGAAAACACACAAATATGTCAAAATCAATTTTGTGCATGTTTGGAATCACGGTGGCACCTTGATTTTGTTGAAAATGTAGCTTTTGCACCGTGATTTTCTGAAACTCACCGCAAATCCAAACATGCGCGTAATTGTTTTTTAATAGAAATGTCAAGGCCCAAACTCTGTGGTCAAAACATATGATTGCGTGTCATCCTCAAATATGATACAGGATTGATGGAATGAAATGGATTCATAATAAAACTCCATTGTTTGGAAGGATTGATTGAAATACGAGGGAAAGGAGTGGGATATGATGGAATGCATTTCGTTGCATTCTATTTAATACCTTGCTTTTCTTCTCTTCCATTAACGGAGAAATGTTTTTTTTTTTTTTGTCAATATCATTATAACATTTAAACAATGGAATGGTAATTGGTAAGCTACTCCACTCCAATAAATCCCCTTTCGTTCAGCTTCACTCTCCGTTATATATCCAAAAACAGCCTTAGGGTGCTCTTCTGTGCTTCTTTCGCGCTTGTGAAGTCAGACATGAGTAAAATGATTATGGGGTGGCTGCATTTGTTTAATGTCCCTTCTAACGTTTACTTTATAGCTTTTACACTGTAGGTGCTCCAACTTTTGCCTGTTAAGTCCCTTGCTTCAAAGCTTGTAGTGAAGAGATCTGCCTTGTCACTGGAGAACTTCCTGAAAGATCATTACCTGGCTGGCTCTCCAGTTATCATCAGCGACTGCATGGCGCACTGGCCAGCCAAGAAAAACTGGAATAATATAGATTACTTGCAAAGAGTTGCTGGTGACCGCACTGTTCCGGTTGAGGTAATTACTCTTGTTGATTTGTAACTAAAATGCATGGCACCTCCTCTTTGAACTTTGAAGAACAAATTTATAGAGATAAAGTTTTCAAAATCGGGTGCATGTGTTTAGTTTCTTGATTTCACAGGGGAAAACAGATAGCTGGGTGACAATTTTCCCCATTGATACTCAGATCCTTTGGATTAAACTCTCACCTTAACTAACAATTACAAAACTGTAACTTAACTCAATTGTAGGCCGTAAATGTTCATTAGCTGTTAGATTTAAAGCTATATTCTGAAATTTAAGTTCTTTTTTTTTGGTAATCATTCTTAAACAACTTTGTTACTAGTATTTGGGAAAATTCACCGGGCAGTTTGAGCAAAAAGTAACGGTGTATGCCTGTAAAGAAAAGTAGGGTGAGGGAAATTCAAGTGAAAACGTGAAAACTTTGCATTGAACACTTAAGTGACAAACTTAAACTTAATACACTTTGATTACATTGGCAACATGATTATTATCTATCTTCTAATTATAACTTATTTCTCATCCCCTCTTTTTAAATAGCTAAATTTATTTCTACGGGCAACCAGAATTAATCATAAATTCATCCACTAGGAAATTATTTAATTGGAACATACTTCAATGCAATCTCTTGCATTGCGTGCATTCCCTTTAAATATCTCTCTGATTGCATAGGCCTAAAAATGCTCTATGTAGAAATCCTAGAACTTTTACCCTGTCATTCATCTGTCAAGTGAATAAATAAATTTGTTTGGTTGCAACAGTTGGTTATTGAAGACTCACCCCTCCCCCTATTCTGTGACAAATCCTGACAGATTCTGTTTTAGCCACCAAGTTGTTGAACTGAAACTGGAAATGGATGCGATAAAAGTTGAAAGATTTGCTTCATGTGATTGTAAATGTTAATTGTAATTGCAGTACCTCCCCTCCCGTCTTTATACTGTAATTTGTATTTTACCTCAAGTGTTGTTTGTATTTATGTCACGTTACCTCTTGTAATTTTTTTTTTCTGTGATGGCGAAGTCGTTGAATTTGTATAATAGTATACTAGAAGAAAAGGGTAAGTGTGCCGCATTCTTTGCAGGTTGGGAAAAACTATTTATGTGCAGATTGGAAGCAAGAGCTAGTTACGTTTTCTGAGTTCCTTGATCGGATAAGATCTAAAGGCTTTTCTCCTGGTGGTCCTACATATCTTGCTCAGCATCCCTTATTTGATCAGGTATTCAAAGTTTAGTTTATTTTTTCTACAATTCCAACTGTTGTAATTATGACATGCAAGTTCAGGACTTTTACTGCTCTTTCGGTTTCTGACATTTTTGAATGGCAGATAAATGAGCTTCGGAGAGATATCTTTATTCCTGACTATTGTTTTACTGGTGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACTGTAACGCCATTACACCATGATCCACATCATAACATTCTAGCACAGGTATTTCAGTTGTATACTTGTATAGTTTCTCTTTGAATAATTGTAGACTTGTATTGAACAATTTCAAATTAAAGCTGCTTGTTAAACACTCACCTCGCCCTAGGCCCTGCCCAGAGTTAAATCATGTTATATACCCCTTGCTATTATGGTTCTTATTTGTTTTGAGCACTTGTAAGTAGTTATTAGTGAAATAAAGGTCCCATACTCCCATGAGTCCAACTTCGGCAAGTACTGTTACCGAGCCAGATTCATGCTTCTTCCCTATATTACAATTGTGTTATAGTTCTAAATGTACACTTTATAGCTGGCAACCTGGCATGGCATAGTTGATGTACTTCCAGCAATACAAAGTTCAGATTTTTCTGTCCCTTATCTTAAGAGAAATCTGTGATACAACATTTTGGTTTATATAATATTCTAGTTATTTAAATTGTTTAAAAAATGCTGCGTACATTACCGGTGCACCATAGAATGATATATTTGACGGAGATTAATGTCTTGTTTCACACTTCCAGGTTGTTGGGAAAAAATACGTCAGGCTTTATCCAGCATCTTTGTCTGAGGAACTTTTCCCCTACTCAGAAATCATGCTTTGCAATTCCAGCCAGGTATTTAGTTTTCTGAACTGTATAATTGAATAATTTTGTGTGCCGTCTGCTTAAGCCTTTGCTTGGAAGAATATCGCTCACTGCAACCTATTTTGAATGACCGAAGAACAAGCCTTTGCTTGGAAGAATATCACTCACTGCAACCTATTTTGAATGACCGAAGAACTATAGCCTATAGAAGTATTTCCTTAATTCAACGTATCTTCTCTGTCGTCTTTTCTTTCTCTACTCTGTATGTGTCTTGTCTTTTCTTTCTCTCCTCTGCATGTATAGGTGTGTAATTTTTATCACAAACCTAAACATTTCTATCTTATATCTGTTTTACTATCAGAATATTTTTCCAGTTTACCTATACAATATATGGGGTATGGAATAGTTTTAAATCCACGACTCCGTCTGTTGTAAAATGGTAAAATTTTATGCGCACGGAATAAGACGTGCCATTCATTTCATATGCGTTCATTTTATTGCTTTTAATTAGGTGATTGTTTCATTTGTATTATTATTGCTTTTTGATATTTCTGGAAATCTGTCTTCGTGTTGACTGGTCATTTTCTTTTGTTTGAAGGTTGATTTAGATGACGTAGATGAATTGAAGTTTCCTAAGGTGCAAGACTTGGAATTTGTAGACTGCATTTTAGAGGAAGGTGAAATGTTATATATCCCGCCAAAGTGGTGGCACTATGTGCGTTCTTTAACTACCAGTTTATCAGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCATCTCCGTCTTAA

Protein sequence

>MS.gene056338.t1

MSKTTSSISDSLQTPTLDAESPTLLHSISSHGGYAYVRMSSLAAAGDIRAAEAVREMAWEQLHSGPWHSVLPVWRDAYSMACLQVAKCCYENGEFKEALRALDMGIIMGGSLLRKDLDSAVVKVSEKARMVKVDNGRCKDFGGSEHLLVDLEFDVSKVLQLLPVKSLASKLVVKRSALSLENFLKDHYLAGSPVIISDCMAHWPAKKNWNNIDYLQRVAGDRTVPVEVGKNYLCADWKQELVTFSEFLDRIRSKGFSPGGPTYLAQHPLFDQINELRRDIFIPDYCFTGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYVRLYPASLSEELFPYSEIMLCNSSQVDLDDVDELKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSSPS