AlfalfaGEDB | MS.gene81982

M. sativa cultivar XinJiangDaYe / MS.gene81982

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81982.t1	XP_013461402.1	92.8	347	25	0	1	347	1	347	1.50E-177	632.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81982.t1	Q9SUQ3	61.0	346	125	2	11	346	291	636	3.0e-113	409.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81982.t1	A0A072V0V8	92.8	347	25	0	1	347	1	347	1.1e-177	632.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene81982	0.804685	1.92E-49	-1.69E-46
MS.gene052447	MS.gene81982	0.842147	3.09E-58	-1.69E-46
MS.gene053082	MS.gene81982	0.800289	1.55E-48	-1.69E-46
MS.gene05423	MS.gene81982	0.821624	3.66E-53	-1.69E-46
MS.gene055228	MS.gene81982	0.81526	1.01E-51	-1.69E-46
MS.gene058617	MS.gene81982	0.804308	2.30E-49	-1.69E-46
MS.gene060257	MS.gene81982	0.806428	8.27E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81982.t1	MTR_3g090665	93.660	347	22	0	1	347	1	347	0.0	641
MS.gene81982.t1	MTR_3g090660	85.920	348	47	2	1	347	267	613	0.0	606
MS.gene81982.t1	MTR_1g028890	69.054	349	98	6	1	346	236	577	1.03e-167	480
MS.gene81982.t1	MTR_8g099195	65.680	338	100	3	1	328	265	596	3.37e-160	463
MS.gene81982.t1	MTR_5g009660	66.767	331	99	6	26	345	268	598	1.85e-158	457
MS.gene81982.t1	MTR_3g062500	62.654	324	112	5	30	345	328	650	3.76e-140	412
MS.gene81982.t1	MTR_3g062500	62.654	324	112	5	30	345	338	660	5.49e-140	412
MS.gene81982.t1	MTR_5g075630	57.064	361	138	6	1	345	292	651	1.30e-137	405
MS.gene81982.t1	MTR_3g093710	56.667	330	137	5	21	345	307	635	4.90e-125	373
MS.gene81982.t1	MTR_4g113100	61.745	298	109	4	30	325	321	615	5.32e-124	371

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81982.t1	AT4G23740	61.834	338	117	3	21	346	299	636	7.94e-149	434
MS.gene81982.t1	AT4G23740	61.834	338	117	3	21	346	299	636	7.94e-149	434
MS.gene81982.t1	AT5G53320	60.714	336	115	5	13	344	262	584	2.15e-141	414
MS.gene81982.t1	AT5G58300	54.494	356	138	6	4	345	302	647	1.07e-131	390
MS.gene81982.t1	AT5G58300	54.494	356	138	6	4	345	302	647	1.07e-131	390
MS.gene81982.t1	AT5G58300	54.494	356	138	6	4	345	302	647	1.07e-131	390
MS.gene81982.t1	AT3G08680	56.941	353	142	6	1	345	280	630	1.34e-129	385
MS.gene81982.t1	AT3G08680	56.941	353	142	6	1	345	280	630	1.34e-129	385
MS.gene81982.t1	AT2G26730	60.671	328	118	5	15	339	309	628	2.12e-129	385
MS.gene81982.t1	AT5G41680	53.754	333	149	4	1	331	1	330	1.58e-123	358

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Find 75 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGCAGATGGAAGTGATA+GGG	0.543756	3.2:+76567641	MS.gene81982:CDS
AACATATAAGGCTGCTTTAG+AGG	0.368286	3.2:+76567558	MS.gene81982:CDS
AACATCTTCCTCAACTCACA+AGG	0.620855	3.2:+76568549	MS.gene81982:CDS
AACCATATCCTTGTGAGTTG+AGG	0.561486	3.2:-76568557	None:intergenic
AAGAGCTTATTATTATTCAA+AGG	0.522150	3.2:+76567693	MS.gene81982:CDS
AAGAGGTTACTGTTGGGAAA+AGG	0.428311	3.2:+76567611	MS.gene81982:CDS
AAGGGAATTTGAACAGCAGA+TGG	0.557547	3.2:+76567630	MS.gene81982:CDS
AAGTATTGAGGAAGAAATGG+TGG	0.565727	3.2:+76568860	MS.gene81982:CDS
AAGTTGTGAGAATGATAGAA+GGG	0.575484	3.2:+76568946	MS.gene81982:CDS
AAGTTGTTCACTTGGTTAGA+TGG	0.339319	3.2:+76568772	MS.gene81982:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGTGAGAATGATAGAA+GGG	+	chr3.2:76568946-76568965	MS.gene81982:CDS	30.0%
ATGAGTTCAATACCATTACA+AGG	+	chr3.2:76568609-76568628	MS.gene81982:CDS	30.0%
TACGTTTGGTACAACATATA+AGG	+	chr3.2:76567546-76567565	MS.gene81982:CDS	30.0%
AAGTTGTTCACTTGGTTAGA+TGG	+	chr3.2:76568772-76568791	MS.gene81982:CDS	35.0%
AATCTGTTGTTAGAGAGGAA+TGG	+	chr3.2:76568799-76568818	MS.gene81982:CDS	35.0%
AGTGTTTCTTCCATCTTACA+TGG	+	chr3.2:76567754-76567773	MS.gene81982:CDS	35.0%
AGTTGTTCACTTGGTTAGAT+GGG	+	chr3.2:76568773-76568792	MS.gene81982:CDS	35.0%
CAATCTTGCATTTGATCTAG+AGG	+	chr3.2:76567486-76567505	MS.gene81982:CDS	35.0%
GAAGTTGTGAGAATGATAGA+AGG	+	chr3.2:76568945-76568964	MS.gene81982:CDS	35.0%
GAGTTTACGGAAACAACATA+CGG	-	chr3.2:76568125-76568144	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	76567349	76569034	76567349	ID=MS.gene81982
chr3.2	mRNA	76567349	76569034	76567349	ID=MS.gene81982.t1;Parent=MS.gene81982
chr3.2	exon	76567349	76567775	76567349	ID=MS.gene81982.t1.exon1;Parent=MS.gene81982.t1
chr3.2	CDS	76567349	76567775	76567349	ID=cds.MS.gene81982.t1;Parent=MS.gene81982.t1
chr3.2	exon	76568418	76569034	76568418	ID=MS.gene81982.t1.exon2;Parent=MS.gene81982.t1
chr3.2	CDS	76568418	76569034	76568418	ID=cds.MS.gene81982.t1;Parent=MS.gene81982.t1

Gene Sequence

>MS.gene81982

ATGGTTTTGTGCTGCTGTGACCATGCTGCAGGTGTAAAGGAACCTGTGAAGAAATCCAAGAAAAAAGAAGTATCTATGAAAGCAGAATCTTGTGCTAGTGATCAAGATAAAAACAAAATAGTCTTTTTTGAGGATTGCAATCTTGCATTTGATCTAGAGGACCTTCTGAGAGCTTCTGCTCAGATTCTTGGAAAAGGTACGTTTGGTACAACATATAAGGCTGCTTTAGAGGATGTAACCACGGTGGCGGTGAAGAGGTTGAAAGAGGTTACTGTTGGGAAAAGGGAATTTGAACAGCAGATGGAAGTGATAGGGAAAATTAAGCATGAAAATGTGGATGCATTAAGAGCTTATTATTATTCAAAGGATGAGAAATTAGTAGTTTCTGATTATTATCAACAAGGCAGTGTTTCTTCCATCTTACATGGTATGTTCAACCTTTTCTCTTGTATATCCAAAAAAATTCAGTTACATTATCTCTAGCTTCTCTAATTTTTTCTCAGAAGCTTACAGAATGAAATATCAGTTTTCTGCAATCACATAACAAGTATTATTTTTTCAGCATGTCCAACTCTTAACCACAAGTCATGTGGTGCACTTACAATGATATGTTTTGTGTAGTGTCTCACATGTCACAACTCAATCTAACTTAGGCACTGTTTGGATAAGTGCTTATATATAAGTTATTTCTATAACTCAAGATAAATCATATTAGTTATCACGATGAGTTTATGAAGAAAGAAAAAACTGAAAAAAAAAACTTATGGACGTGTCCGTATGTTGTTTCCGTAAACTCTTTGAAAATATAAATTGTCTCACGAGTGCTTATATTAATAGATAAAATCAAATAAGTCAATCCAAACATGCCCCTAGTAGATATTAGAGCCTAAAATTAACATTGTTTGATCCGGTTCACCACTAAGTTGAAGTTTATATCTCATTTATATTCAAAATCTCAAGACACAAATATAAAGGTCACTTTTTTATATTATCTTGATTTACTTGATCAATTTTCCAACATATGGAAGTGGCTAATGGAAACGTGATTTCTTTTATCTAAATCATGAAGGAAAAAGAAGGGAACGAAGAACTCTAGACTGGGACGGCCGTTTAAGGATCGCAATTGGTACAGCAAGAGGCATTGCTCACATCCATGTTCAACAAGGAGGGAAACTTGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCACAAGGATATGGTTGTGTATCTGACATAGGTTTGGCAACTTTGATGAGTTCAATACCATTACAAGGAACAAGAGCAACAGGATACCGCGCACCAGAAGTAATCGACACGCGTAAAGCAACACATTCATCTGATGTATACAGTTTTGGTGTTCTACTACTTGAGCTTCTAACTGGGAAACCACCTTTATACTCTAAAGAAGGAGAACAAGTTGTTCACTTGGTTAGATGGGTGAAATCTGTTGTTAGAGAGGAATGGACTGCAGAGGTTTTCGATGCGGAGCTTTTGAGGTATTCAAGTATTGAGGAAGAAATGGTGGAGATGCTTCAAATTGGGATGGCTTGTGCATCAAGAATGCCAGATCAGAGACCAAAAATGGCTGAAGTTGTGAGAATGATAGAAGGGATTCGTCCTGAAAATCGACTATCGTCTACCGAGTCTGGATCACAAGTTTCTACTCCAACAGTTTAG

Protein sequence

>MS.gene81982.t1

MVLCCCDHAAGVKEPVKKSKKKEVSMKAESCASDQDKNKIVFFEDCNLAFDLEDLLRASAQILGKGTFGTTYKAALEDVTTVAVKRLKEVTVGKREFEQQMEVIGKIKHENVDALRAYYYSKDEKLVVSDYYQQGSVSSILHGKRRERRTLDWDGRLRIAIGTARGIAHIHVQQGGKLVHGNIKASNIFLNSQGYGCVSDIGLATLMSSIPLQGTRATGYRAPEVIDTRKATHSSDVYSFGVLLLELLTGKPPLYSKEGEQVVHLVRWVKSVVREEWTAEVFDAELLRYSSIEEEMVEMLQIGMACASRMPDQRPKMAEVVRMIEGIRPENRLSSTESGSQVSTPTV