Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82411.t1 | XP_024636938.1 | 86.5 | 517 | 35 | 3 | 1 | 501 | 50 | 547 | 2.90E-254 | 887.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82411.t1 | Q0WNP3 | 52.7 | 393 | 175 | 2 | 120 | 501 | 88 | 480 | 4.6e-123 | 443.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82411.t1 | G7JIR5 | 86.5 | 517 | 35 | 3 | 1 | 501 | 50 | 547 | 2.1e-254 | 887.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05101 | MS.gene82411 | 0.803032 | 4.23E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene82411 | 0.826253 | 3.00E-54 | -1.69E-46 |
| MS.gene052290 | MS.gene82411 | 0.802318 | 5.94E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene82411 | 0.808383 | 3.18E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene82411 | 0.809865 | 1.53E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene82411 | 0.800246 | 1.58E-48 | -1.69E-46 |
| MS.gene053209 | MS.gene82411 | 0.822033 | 2.94E-53 | -1.69E-46 |
| MS.gene055254 | MS.gene82411 | 0.810712 | 1.01E-50 | -1.69E-46 |
| MS.gene056410 | MS.gene82411 | 0.811594 | 6.48E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene82411 | 0.804409 | 2.19E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene82411 | 0.80102 | 1.10E-48 | -1.69E-46 |
| MS.gene058082 | MS.gene82411 | 0.8243 | 8.70E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene82411 | 0.808443 | 3.09E-50 | -1.69E-46 |
| MS.gene059974 | MS.gene82411 | 0.803869 | 2.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCAAACATATGCCTTTA+AGG | 0.096152 | 4.4:+29281921 | MS.gene82411:CDS |
| GAAAATAAAGCATTGAAATT+TGG | 0.105740 | 4.4:+29281483 | MS.gene82411:CDS |
| TGGATATTTAAAATATAATT+TGG | 0.149059 | 4.4:+29281068 | MS.gene82411:CDS |
| ACAATTAAGGCTTCACTAAT+TGG | 0.243245 | 4.4:+29281785 | MS.gene82411:CDS |
| AGCCAATGAGCTACTGTTTC+TGG | 0.249337 | 4.4:-29280853 | None:intergenic |
| TCATGAATTTGTGCTGTAAA+AGG | 0.253668 | 4.4:+29281166 | MS.gene82411:CDS |
| AAAATAAAGCATTGAAATTT+GGG | 0.282132 | 4.4:+29281484 | MS.gene82411:CDS |
| GATGGCTTGTGGCACAATTA+AGG | 0.292588 | 4.4:+29281772 | MS.gene82411:CDS |
| CATGAGACAACATCCCTTAA+AGG | 0.308678 | 4.4:-29281935 | None:intergenic |
| GGATACACGCGAAATGGATT+TGG | 0.331392 | 4.4:+29281672 | MS.gene82411:CDS |
| CGACGGAGGTGATGAGAAAA+TGG | 0.357396 | 4.4:+29280235 | MS.gene82411:CDS |
| ATTTGTAGCTATTTAAGATT+AGG | 0.360607 | 4.4:+29280970 | MS.gene82411:CDS |
| CCTAGCACACCCGGAGATAA+TGG | 0.364322 | 4.4:-29281963 | None:intergenic |
| TCTTCACGTCAGACGCATCT+AGG | 0.367980 | 4.4:-29280795 | None:intergenic |
| AAGATTAGGTAAGTTAGTTC+AGG | 0.369917 | 4.4:+29280984 | MS.gene82411:CDS |
| ATCTCCGGGTGTGCTAGGCT+TGG | 0.380691 | 4.4:+29281968 | MS.gene82411:CDS |
| TCTCCGGGTGTGCTAGGCTT+GGG | 0.391463 | 4.4:+29281969 | MS.gene82411:CDS |
| TCGCGTGTATCCTGATATAA+TGG | 0.393623 | 4.4:-29281661 | None:intergenic |
| ACTTGGACATCCATTATATC+AGG | 0.398379 | 4.4:+29281651 | MS.gene82411:CDS |
| AAAAGGGTGGATTTAGCCTT+GGG | 0.400884 | 4.4:+29281183 | MS.gene82411:CDS |
| TTCATGTCCGAGCCCGTGTT+GGG | 0.403657 | 4.4:-29281376 | None:intergenic |
| CATCACAATCTCTAGTCATT+TGG | 0.406103 | 4.4:-29280295 | None:intergenic |
| CGAAAACCCTGTGCCGTCAT+TGG | 0.408195 | 4.4:-29280264 | None:intergenic |
| GCACATACAGTATACTCATT+AGG | 0.414591 | 4.4:-29281441 | None:intergenic |
| TGGGCTTGAAACCGAGGCCC+TGG | 0.415729 | 4.4:+29281988 | MS.gene82411:CDS |
| ACATGGACTGCTATTATAGA+TGG | 0.423052 | 4.4:+29281048 | MS.gene82411:CDS |
| TCATGGACTGCCATTATCTC+CGG | 0.425615 | 4.4:+29281953 | MS.gene82411:CDS |
| CTCGTATCTTGAAAAGCAAC+TGG | 0.426991 | 4.4:+29281220 | MS.gene82411:CDS |
| GCTCAAACATATGCCTTTAA+GGG | 0.436021 | 4.4:+29281922 | MS.gene82411:CDS |
| CTTCATGTCCGAGCCCGTGT+TGG | 0.442936 | 4.4:-29281377 | None:intergenic |
| GGAGATTGTGAGTTCTAAAA+AGG | 0.443681 | 4.4:+29281596 | MS.gene82411:CDS |
| ATATCAGGATACACGCGAAA+TGG | 0.451097 | 4.4:+29281666 | MS.gene82411:CDS |
| ATTTAGAACATTTGATCGTA+TGG | 0.453819 | 4.4:+29281308 | MS.gene82411:CDS |
| CCATTATCTCCGGGTGTGCT+AGG | 0.459128 | 4.4:+29281963 | MS.gene82411:CDS |
| CTTCACGTCAGACGCATCTA+GGG | 0.462323 | 4.4:-29280794 | None:intergenic |
| CAAAGCGAGATGTGGTTTGT+TGG | 0.471738 | 4.4:+29281331 | MS.gene82411:CDS |
| TAAAAGGGTGGATTTAGCCT+TGG | 0.473500 | 4.4:+29281182 | MS.gene82411:CDS |
| TTACGTGAAATGATGGAAGA+AGG | 0.477964 | 4.4:+29282016 | MS.gene82411:CDS |
| ATCCAGAAACAGTAGCTCAT+TGG | 0.482374 | 4.4:+29280851 | MS.gene82411:CDS |
| CATGAATTTGTGCTGTAAAA+GGG | 0.482755 | 4.4:+29281167 | MS.gene82411:CDS |
| AAAGGTCTTTGATAGAATGA+AGG | 0.486103 | 4.4:+29281614 | MS.gene82411:CDS |
| CAGACAAACATCTTACTGTT+CGG | 0.496773 | 4.4:-29281141 | None:intergenic |
| TACTGTATGTGCTTCCCTAA+AGG | 0.503858 | 4.4:+29281452 | MS.gene82411:CDS |
| ATGATGTGGAAGAAGTAGGA+AGG | 0.517997 | 4.4:+29280887 | MS.gene82411:CDS |
| AGAGATTGTGATGCACAAAC+TGG | 0.520918 | 4.4:+29280305 | MS.gene82411:CDS |
| ATGGCGGTGCTCGTGTCACA+AGG | 0.526066 | 4.4:+29280135 | MS.gene82411:CDS |
| CATGGACTGCCATTATCTCC+GGG | 0.527935 | 4.4:+29281954 | MS.gene82411:CDS |
| GGCTTCACTAATTGGAAGAG+AGG | 0.529352 | 4.4:+29281793 | MS.gene82411:CDS |
| GATGATACCAATGACGGCAC+AGG | 0.532642 | 4.4:+29280257 | MS.gene82411:CDS |
| CAGGCTCGTAAAGTGTTTGA+CGG | 0.535167 | 4.4:+29281003 | MS.gene82411:CDS |
| GCTTGTTCCCAACACGGGCT+CGG | 0.543620 | 4.4:+29281369 | MS.gene82411:CDS |
| TTCATGGTTCAATTAAGCAC+GGG | 0.543956 | 4.4:+29281112 | MS.gene82411:CDS |
| AAGCCCAAGCCTAGCACACC+CGG | 0.546471 | 4.4:-29281972 | None:intergenic |
| TGTTATGATGTGGAAGAAGT+AGG | 0.547569 | 4.4:+29280883 | MS.gene82411:CDS |
| TTGATATGTATGCAAAATGT+GGG | 0.548000 | 4.4:+29281574 | MS.gene82411:CDS |
| TGTTTGACGGCATGTCAAGA+AGG | 0.554879 | 4.4:+29281016 | MS.gene82411:CDS |
| ACATAGAAAGCACTTTGGTA+TGG | 0.554897 | 4.4:+29281858 | MS.gene82411:CDS |
| TTTCATGGTTCAATTAAGCA+CGG | 0.558837 | 4.4:+29281111 | MS.gene82411:CDS |
| AGGTTAGAAATACAGCTACT+TGG | 0.566883 | 4.4:+29281634 | MS.gene82411:CDS |
| CAAGAAGGGATACAGTTACA+TGG | 0.567569 | 4.4:+29281031 | MS.gene82411:CDS |
| ATTACTGCTTGTTCCCAACA+CGG | 0.572570 | 4.4:+29281363 | MS.gene82411:CDS |
| AGCGTGGATTTGTTTCCCCA+AGG | 0.577364 | 4.4:-29281199 | None:intergenic |
| AAACAGTAGCTCATTGGCTG+CGG | 0.579283 | 4.4:+29280857 | MS.gene82411:CDS |
| CATGTACATAGAAAGCACTT+TGG | 0.581031 | 4.4:+29281853 | MS.gene82411:CDS |
| GACGCTTGTATGTGTCATGA+TGG | 0.581312 | 4.4:+29281754 | MS.gene82411:CDS |
| TCAAAACACATGCTCGGCTG+CGG | 0.582318 | 4.4:+29280708 | MS.gene82411:CDS |
| TTATTGTTGTCACAAATGCT+AGG | 0.588440 | 4.4:+29281405 | MS.gene82411:CDS |
| AAAACTTCAAAACACATGCT+CGG | 0.589492 | 4.4:+29280702 | MS.gene82411:CDS |
| TGTGCTTCCCTAAAGGCTTG+TGG | 0.593359 | 4.4:+29281459 | MS.gene82411:CDS |
| GTTTGACGGCATGTCAAGAA+GGG | 0.599540 | 4.4:+29281017 | MS.gene82411:CDS |
| TTACTGCTTGTTCCCAACAC+GGG | 0.600045 | 4.4:+29281364 | MS.gene82411:CDS |
| TAGGCTTGGGCTTGAAACCG+AGG | 0.603405 | 4.4:+29281982 | MS.gene82411:CDS |
| GTATGTGTCATGATGGCTTG+TGG | 0.603667 | 4.4:+29281761 | MS.gene82411:CDS |
| TTTGATGATGATTCCGACGG+AGG | 0.604133 | 4.4:+29280221 | MS.gene82411:CDS |
| TGATGTGGAAGAAGTAGGAA+GGG | 0.605255 | 4.4:+29280888 | MS.gene82411:CDS |
| TTGTCACAAATGCTAGGTGA+TGG | 0.605766 | 4.4:+29281411 | MS.gene82411:CDS |
| CTTTAAGGGATGTTGTCTCA+TGG | 0.606526 | 4.4:+29281936 | MS.gene82411:CDS |
| GCTGCGGTTGTGTTATGATG+TGG | 0.619842 | 4.4:+29280873 | MS.gene82411:CDS |
| ATTGATATGTATGCAAAATG+TGG | 0.625022 | 4.4:+29281573 | MS.gene82411:CDS |
| TCGTATGGCAAAGCGAGATG+TGG | 0.628222 | 4.4:+29281323 | MS.gene82411:CDS |
| ATGATACCAATGACGGCACA+GGG | 0.634599 | 4.4:+29280258 | MS.gene82411:CDS |
| GAATTTGTGCTGTAAAAGGG+TGG | 0.657860 | 4.4:+29281170 | MS.gene82411:CDS |
| AAATTTGGGACACAGCTACA+CGG | 0.658738 | 4.4:+29281498 | MS.gene82411:CDS |
| CGGTGCTCGTGTCACAAGGG+TGG | 0.662381 | 4.4:+29280139 | MS.gene82411:CDS |
| GTATCTTGAAAAGCAACTGG+AGG | 0.665994 | 4.4:+29281223 | MS.gene82411:CDS |
| TTCACGTCAGACGCATCTAG+GGG | 0.668383 | 4.4:-29280793 | None:intergenic |
| AAAATGGATGATACCAATGA+CGG | 0.675623 | 4.4:+29280251 | MS.gene82411:CDS |
| TCATGGTTCAATTAAGCACG+GGG | 0.677100 | 4.4:+29281113 | MS.gene82411:CDS |
| TGGCGGTGCTCGTGTCACAA+GGG | 0.677789 | 4.4:+29280136 | MS.gene82411:CDS |
| AGGGTGGTGCTGAATCGCGT+TGG | 0.679547 | 4.4:+29280155 | MS.gene82411:CDS |
| AAAGGGTGGATTTAGCCTTG+GGG | 0.697500 | 4.4:+29281184 | MS.gene82411:CDS |
| TGATATGTATGCAAAATGTG+GGG | 0.736622 | 4.4:+29281575 | MS.gene82411:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGATATTTAAAATATAATT+TGG | + | chr4.4:29281068-29281087 | MS.gene82411:CDS | 10.0% |
| !!! | AAAATAAAGCATTGAAATTT+GGG | + | chr4.4:29281484-29281503 | MS.gene82411:CDS | 15.0% |
| !!! | TTATCTAGGTTAATTTTAAA+TGG | + | chr4.4:29280586-29280605 | MS.gene82411:intron | 15.0% |
| !! | ATCTTATGGTGAATATAAAA+AGG | - | chr4.4:29280502-29280521 | None:intergenic | 20.0% |
| !!! | ATTTGTAGCTATTTAAGATT+AGG | + | chr4.4:29280970-29280989 | MS.gene82411:CDS | 20.0% |
| !!! | GAAAATAAAGCATTGAAATT+TGG | + | chr4.4:29281483-29281502 | MS.gene82411:CDS | 20.0% |
| !!! | GTTAATTTTTATTCGAAATG+TGG | + | chr4.4:29281270-29281289 | MS.gene82411:CDS | 20.0% |
| !!! | TAGTCAAGTTTTCTATAATT+AGG | + | chr4.4:29280357-29280376 | MS.gene82411:intron | 20.0% |
| ! | AAAACTTGACTAAGAATTGA+AGG | - | chr4.4:29280349-29280368 | None:intergenic | 25.0% |
| ! | ATTGATATGTATGCAAAATG+TGG | + | chr4.4:29281573-29281592 | MS.gene82411:CDS | 25.0% |
| ! | TATGTTTATGTCACAAGATT+TGG | + | chr4.4:29280678-29280697 | MS.gene82411:intron | 25.0% |
| ! | TTGATATGTATGCAAAATGT+GGG | + | chr4.4:29281574-29281593 | MS.gene82411:CDS | 25.0% |
| !! | ATTTAGAACATTTGATCGTA+TGG | + | chr4.4:29281308-29281327 | MS.gene82411:CDS | 25.0% |
| !! | CTTGCAGATTTTCTTTATTA+TGG | - | chr4.4:29281526-29281545 | None:intergenic | 25.0% |
| !!! | ACTTTTTTCGATTAATGAAG+AGG | + | chr4.4:29281708-29281727 | MS.gene82411:intron | 25.0% |
| !!! | ATTGTCTTGAAATGTTTTAG+AGG | + | chr4.4:29280919-29280938 | MS.gene82411:CDS | 25.0% |
| !!! | GAAGCTTTTAAGTTATTTCA+TGG | + | chr4.4:29281096-29281115 | MS.gene82411:CDS | 25.0% |
| AAAACTTCAAAACACATGCT+CGG | + | chr4.4:29280702-29280721 | MS.gene82411:CDS | 30.0% | |
| AAAATGGATGATACCAATGA+CGG | + | chr4.4:29280251-29280270 | MS.gene82411:CDS | 30.0% | |
| AAAGCACACTAACATTCAAA+CGG | - | chr4.4:29280426-29280445 | None:intergenic | 30.0% | |
| AAAGGTCTTTGATAGAATGA+AGG | + | chr4.4:29281614-29281633 | MS.gene82411:CDS | 30.0% | |
| AAGATTAGGTAAGTTAGTTC+AGG | + | chr4.4:29280984-29281003 | MS.gene82411:CDS | 30.0% | |
| ACAATTAAGGCTTCACTAAT+TGG | + | chr4.4:29281785-29281804 | MS.gene82411:CDS | 30.0% | |
| AGTTCATCTCGAATTTATCT+AGG | + | chr4.4:29280572-29280591 | MS.gene82411:intron | 30.0% | |
| CATGAATTTGTGCTGTAAAA+GGG | + | chr4.4:29281167-29281186 | MS.gene82411:CDS | 30.0% | |
| GAAAATGGAATACGATCTTA+TGG | - | chr4.4:29280516-29280535 | None:intergenic | 30.0% | |
| TCATGAATTTGTGCTGTAAA+AGG | + | chr4.4:29281166-29281185 | MS.gene82411:CDS | 30.0% | |
| TGATATGTATGCAAAATGTG+GGG | + | chr4.4:29281575-29281594 | MS.gene82411:CDS | 30.0% | |
| TGTTTCAAATGACGAATCTT+CGG | - | chr4.4:29280549-29280568 | None:intergenic | 30.0% | |
| TTATTGTTGTCACAAATGCT+AGG | + | chr4.4:29281405-29281424 | MS.gene82411:CDS | 30.0% | |
| TTTCATGGTTCAATTAAGCA+CGG | + | chr4.4:29281111-29281130 | MS.gene82411:CDS | 30.0% | |
| ! | ATAGACAATTTTGCTGAGAA+AGG | + | chr4.4:29280817-29280836 | MS.gene82411:CDS | 30.0% |
| !! | TGCAAGAGTGATGTTTTTAT+AGG | + | chr4.4:29281540-29281559 | MS.gene82411:CDS | 30.0% |
| ACTTGGACATCCATTATATC+AGG | + | chr4.4:29281651-29281670 | MS.gene82411:CDS | 35.0% | |
| AGGTTAGAAATACAGCTACT+TGG | + | chr4.4:29281634-29281653 | MS.gene82411:CDS | 35.0% | |
| CAGACAAACATCTTACTGTT+CGG | - | chr4.4:29281144-29281163 | None:intergenic | 35.0% | |
| CATCACAATCTCTAGTCATT+TGG | - | chr4.4:29280298-29280317 | None:intergenic | 35.0% | |
| CATTTCACGTAAAAACTCCA+GGG | - | chr4.4:29282008-29282027 | None:intergenic | 35.0% | |
| GCACATACAGTATACTCATT+AGG | - | chr4.4:29281444-29281463 | None:intergenic | 35.0% | |
| GCTCAAACATATGCCTTTAA+GGG | + | chr4.4:29281922-29281941 | MS.gene82411:CDS | 35.0% | |
| GTACTACTTGTCACATTTAC+TGG | + | chr4.4:29280608-29280627 | MS.gene82411:intron | 35.0% | |
| TCATTTCACGTAAAAACTCC+AGG | - | chr4.4:29282009-29282028 | None:intergenic | 35.0% | |
| TGCTCAAACATATGCCTTTA+AGG | + | chr4.4:29281921-29281940 | MS.gene82411:CDS | 35.0% | |
| TGTTATGATGTGGAAGAAGT+AGG | + | chr4.4:29280883-29280902 | MS.gene82411:CDS | 35.0% | |
| TTCATGGTTCAATTAAGCAC+GGG | + | chr4.4:29281112-29281131 | MS.gene82411:CDS | 35.0% | |
| TTCGGATATGTGGATGAAAA+TGG | - | chr4.4:29280531-29280550 | None:intergenic | 35.0% | |
| ! | ACATGGACTGCTATTATAGA+TGG | + | chr4.4:29281048-29281067 | MS.gene82411:CDS | 35.0% |
| ! | ATTTTCTCCACAAGCCTTTA+GGG | - | chr4.4:29281469-29281488 | None:intergenic | 35.0% |
| ! | GGAGTTTTTACGTGAAATGA+TGG | + | chr4.4:29282009-29282028 | MS.gene82411:CDS | 35.0% |
| ! | TATTTTCTCCACAAGCCTTT+AGG | - | chr4.4:29281470-29281489 | None:intergenic | 35.0% |
| !! | ACATAGAAAGCACTTTGGTA+TGG | + | chr4.4:29281858-29281877 | MS.gene82411:CDS | 35.0% |
| !! | CATGTACATAGAAAGCACTT+TGG | + | chr4.4:29281853-29281872 | MS.gene82411:CDS | 35.0% |
| !! | GGAGATTGTGAGTTCTAAAA+AGG | + | chr4.4:29281596-29281615 | MS.gene82411:CDS | 35.0% |
| !!! | TCTTTTGATGATGATTCCGA+CGG | + | chr4.4:29280218-29280237 | MS.gene82411:CDS | 35.0% |
| AGAGATTGTGATGCACAAAC+TGG | + | chr4.4:29280305-29280324 | MS.gene82411:CDS | 40.0% | |
| ATATCAGGATACACGCGAAA+TGG | + | chr4.4:29281666-29281685 | MS.gene82411:CDS | 40.0% | |
| ATCCAGAAACAGTAGCTCAT+TGG | + | chr4.4:29280851-29280870 | MS.gene82411:CDS | 40.0% | |
| ATGACGAATCTTCGGATATG+TGG | - | chr4.4:29280541-29280560 | None:intergenic | 40.0% | |
| ATGATGTGGAAGAAGTAGGA+AGG | + | chr4.4:29280887-29280906 | MS.gene82411:CDS | 40.0% | |
| ATTACTGCTTGTTCCCAACA+CGG | + | chr4.4:29281363-29281382 | MS.gene82411:CDS | 40.0% | |
| CAAGAAGGGATACAGTTACA+TGG | + | chr4.4:29281031-29281050 | MS.gene82411:CDS | 40.0% | |
| CATGAGACAACATCCCTTAA+AGG | - | chr4.4:29281938-29281957 | None:intergenic | 40.0% | |
| CTCGTATCTTGAAAAGCAAC+TGG | + | chr4.4:29281220-29281239 | MS.gene82411:CDS | 40.0% | |
| GAATTTGTGCTGTAAAAGGG+TGG | + | chr4.4:29281170-29281189 | MS.gene82411:CDS | 40.0% | |
| GTATCTTGAAAAGCAACTGG+AGG | + | chr4.4:29281223-29281242 | MS.gene82411:CDS | 40.0% | |
| TACTGTATGTGCTTCCCTAA+AGG | + | chr4.4:29281452-29281471 | MS.gene82411:CDS | 40.0% | |
| TCATGGTTCAATTAAGCACG+GGG | + | chr4.4:29281113-29281132 | MS.gene82411:CDS | 40.0% | |
| TCGCGTGTATCCTGATATAA+TGG | - | chr4.4:29281664-29281683 | None:intergenic | 40.0% | |
| TGATGTGGAAGAAGTAGGAA+GGG | + | chr4.4:29280888-29280907 | MS.gene82411:CDS | 40.0% | |
| TTGTCACAAATGCTAGGTGA+TGG | + | chr4.4:29281411-29281430 | MS.gene82411:CDS | 40.0% | |
| ! | AAAAGGGTGGATTTAGCCTT+GGG | + | chr4.4:29281183-29281202 | MS.gene82411:CDS | 40.0% |
| ! | AAATTTGGGACACAGCTACA+CGG | + | chr4.4:29281498-29281517 | MS.gene82411:CDS | 40.0% |
| ! | CTTTAAGGGATGTTGTCTCA+TGG | + | chr4.4:29281936-29281955 | MS.gene82411:CDS | 40.0% |
| ! | TAAAAGGGTGGATTTAGCCT+TGG | + | chr4.4:29281182-29281201 | MS.gene82411:CDS | 40.0% |
| AGCCAATGAGCTACTGTTTC+TGG | - | chr4.4:29280856-29280875 | None:intergenic | 45.0% | |
| ATGATACCAATGACGGCACA+GGG | + | chr4.4:29280258-29280277 | MS.gene82411:CDS | 45.0% | |
| GACGCTTGTATGTGTCATGA+TGG | + | chr4.4:29281754-29281773 | MS.gene82411:CDS | 45.0% | |
| GGCTTCACTAATTGGAAGAG+AGG | + | chr4.4:29281793-29281812 | MS.gene82411:CDS | 45.0% | |
| GTATGTGTCATGATGGCTTG+TGG | + | chr4.4:29281761-29281780 | MS.gene82411:CDS | 45.0% | |
| GTTTGACGGCATGTCAAGAA+GGG | + | chr4.4:29281017-29281036 | MS.gene82411:CDS | 45.0% | |
| TGTTTGACGGCATGTCAAGA+AGG | + | chr4.4:29281016-29281035 | MS.gene82411:CDS | 45.0% | |
| TTACTGCTTGTTCCCAACAC+GGG | + | chr4.4:29281364-29281383 | MS.gene82411:CDS | 45.0% | |
| ! | AAACAGTAGCTCATTGGCTG+CGG | + | chr4.4:29280857-29280876 | MS.gene82411:CDS | 45.0% |
| ! | CAAAGCGAGATGTGGTTTGT+TGG | + | chr4.4:29281331-29281350 | MS.gene82411:CDS | 45.0% |
| ! | CAGGCTCGTAAAGTGTTTGA+CGG | + | chr4.4:29281003-29281022 | MS.gene82411:CDS | 45.0% |
| ! | CATTTTCTCATCACCTCCGT+CGG | - | chr4.4:29280237-29280256 | None:intergenic | 45.0% |
| ! | GATGGCTTGTGGCACAATTA+AGG | + | chr4.4:29281772-29281791 | MS.gene82411:CDS | 45.0% |
| ! | GGATACACGCGAAATGGATT+TGG | + | chr4.4:29281672-29281691 | MS.gene82411:CDS | 45.0% |
| ! | TCATGGACTGCCATTATCTC+CGG | + | chr4.4:29281953-29281972 | MS.gene82411:CDS | 45.0% |
| !! | AAAGGGTGGATTTAGCCTTG+GGG | + | chr4.4:29281184-29281203 | MS.gene82411:CDS | 45.0% |
| !! | TGCTTTTCAAGATACGAGCG+TGG | - | chr4.4:29281218-29281237 | None:intergenic | 45.0% |
| !! | TTTGATGATGATTCCGACGG+AGG | + | chr4.4:29280221-29280240 | MS.gene82411:CDS | 45.0% |
| ACGTAAAAACTCCAGGGCCT+CGG | - | chr4.4:29282002-29282021 | None:intergenic | 50.0% | |
| CGACGGAGGTGATGAGAAAA+TGG | + | chr4.4:29280235-29280254 | MS.gene82411:CDS | 50.0% | |
| CTTCACGTCAGACGCATCTA+GGG | - | chr4.4:29280797-29280816 | None:intergenic | 50.0% | |
| GATGATACCAATGACGGCAC+AGG | + | chr4.4:29280257-29280276 | MS.gene82411:CDS | 50.0% | |
| GCTGCGGTTGTGTTATGATG+TGG | + | chr4.4:29280873-29280892 | MS.gene82411:CDS | 50.0% | |
| TCAAAACACATGCTCGGCTG+CGG | + | chr4.4:29280708-29280727 | MS.gene82411:CDS | 50.0% | |
| TCGTATGGCAAAGCGAGATG+TGG | + | chr4.4:29281323-29281342 | MS.gene82411:CDS | 50.0% | |
| TCTTCACGTCAGACGCATCT+AGG | - | chr4.4:29280798-29280817 | None:intergenic | 50.0% | |
| TGTGCTTCCCTAAAGGCTTG+TGG | + | chr4.4:29281459-29281478 | MS.gene82411:CDS | 50.0% | |
| TTCACGTCAGACGCATCTAG+GGG | - | chr4.4:29280796-29280815 | None:intergenic | 50.0% | |
| ! | AGCGTGGATTTGTTTCCCCA+AGG | - | chr4.4:29281202-29281221 | None:intergenic | 50.0% |
| ! | CAATGACGGCACAGGGTTTT+CGG | + | chr4.4:29280265-29280284 | MS.gene82411:CDS | 50.0% |
| ! | CATGGACTGCCATTATCTCC+GGG | + | chr4.4:29281954-29281973 | MS.gene82411:CDS | 50.0% |
| ! | GCGAAATGGATTTGGCGAAG+TGG | + | chr4.4:29281680-29281699 | MS.gene82411:intron | 50.0% |
| CCATTATCTCCGGGTGTGCT+AGG | + | chr4.4:29281963-29281982 | MS.gene82411:CDS | 55.0% | |
| CCTAGCACACCCGGAGATAA+TGG | - | chr4.4:29281966-29281985 | None:intergenic | 55.0% | |
| CGAAAACCCTGTGCCGTCAT+TGG | - | chr4.4:29280267-29280286 | None:intergenic | 55.0% | |
| TAGGCTTGGGCTTGAAACCG+AGG | + | chr4.4:29281982-29282001 | MS.gene82411:CDS | 55.0% | |
| TTCATGTCCGAGCCCGTGTT+GGG | - | chr4.4:29281379-29281398 | None:intergenic | 55.0% | |
| AAGCCCAAGCCTAGCACACC+CGG | - | chr4.4:29281975-29281994 | None:intergenic | 60.0% | |
| ATCTCCGGGTGTGCTAGGCT+TGG | + | chr4.4:29281968-29281987 | MS.gene82411:CDS | 60.0% | |
| ATGGCGGTGCTCGTGTCACA+AGG | + | chr4.4:29280135-29280154 | MS.gene82411:CDS | 60.0% | |
| CTTCATGTCCGAGCCCGTGT+TGG | - | chr4.4:29281380-29281399 | None:intergenic | 60.0% | |
| GCTTGTTCCCAACACGGGCT+CGG | + | chr4.4:29281369-29281388 | MS.gene82411:CDS | 60.0% | |
| TCTCCGGGTGTGCTAGGCTT+GGG | + | chr4.4:29281969-29281988 | MS.gene82411:CDS | 60.0% | |
| TGGCGGTGCTCGTGTCACAA+GGG | + | chr4.4:29280136-29280155 | MS.gene82411:CDS | 60.0% | |
| ! | AGGGTGGTGCTGAATCGCGT+TGG | + | chr4.4:29280155-29280174 | MS.gene82411:CDS | 60.0% |
| CGGTGCTCGTGTCACAAGGG+TGG | + | chr4.4:29280139-29280158 | MS.gene82411:CDS | 65.0% | |
| TGGGCTTGAAACCGAGGCCC+TGG | + | chr4.4:29281988-29282007 | MS.gene82411:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 29280135 | 29282037 | 29280135 | ID=MS.gene82411 |
| chr4.4 | mRNA | 29280135 | 29282037 | 29280135 | ID=MS.gene82411.t1;Parent=MS.gene82411 |
| chr4.4 | exon | 29280135 | 29280326 | 29280135 | ID=MS.gene82411.t1.exon1;Parent=MS.gene82411.t1 |
| chr4.4 | CDS | 29280135 | 29280326 | 29280135 | ID=cds.MS.gene82411.t1;Parent=MS.gene82411.t1 |
| chr4.4 | exon | 29280695 | 29281698 | 29280695 | ID=MS.gene82411.t1.exon2;Parent=MS.gene82411.t1 |
| chr4.4 | CDS | 29280695 | 29281698 | 29280695 | ID=cds.MS.gene82411.t1;Parent=MS.gene82411.t1 |
| chr4.4 | exon | 29281728 | 29282037 | 29281728 | ID=MS.gene82411.t1.exon3;Parent=MS.gene82411.t1 |
| chr4.4 | CDS | 29281728 | 29282037 | 29281728 | ID=cds.MS.gene82411.t1;Parent=MS.gene82411.t1 |
| Gene Sequence |
| Protein sequence |
