AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052322


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052322.t1 MTR_4g076520 96.260 508 19 0 1 508 60 567 0.0 1005
MS.gene052322.t1 MTR_7g011400 87.678 211 26 0 280 490 21 231 3.70e-133 386
MS.gene052322.t1 MTR_8g069840 32.812 192 118 5 22 206 79 266 8.72e-18 87.8
MS.gene052322.t1 MTR_8g069840 32.812 192 118 5 22 206 79 266 9.49e-18 87.4
MS.gene052322.t1 MTR_1g095360 25.000 300 210 10 200 488 532 827 1.29e-13 73.9
MS.gene052322.t1 MTR_1g095360 25.000 300 210 10 200 488 567 862 1.54e-13 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052322.t1 AT1G18870 55.899 517 205 5 1 502 51 559 0.0 583
MS.gene052322.t1 AT1G18870 55.899 517 205 5 1 502 1 509 0.0 582
MS.gene052322.t1 AT1G74710 54.808 520 206 5 1 498 48 560 0.0 574
MS.gene052322.t1 AT1G74710 54.440 518 207 5 1 496 48 558 0.0 566
MS.gene052322.t1 AT1G18870 52.805 517 197 6 1 502 51 535 0.0 531
MS.gene052322.t1 AT1G68890 30.952 210 132 5 8 208 67 272 1.46e-20 96.3
MS.gene052322.t1 AT2G29690 27.309 249 148 4 269 497 365 600 5.96e-14 75.1

Find 126 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTCATCCCACTCCAAGTA+TGG 0.248367 4.4:-33942326 None:intergenic
CATTTATTTGCTCAATTAAC+TGG 0.264103 4.4:+33941317 MS.gene052322:CDS
AGCAACTATTTCACAGAAAA+TGG 0.276767 4.4:+33940297 MS.gene052322:CDS
AGAAAGCATACGAAGAAAAT+TGG 0.278150 4.4:+33940549 MS.gene052322:CDS
GGAAACTTGGTTAGCATTGC+TGG 0.279230 4.4:+33937913 MS.gene052322:CDS
TCATCAGAGTGGATGGCTTT+TGG 0.282890 4.4:+33938346 MS.gene052322:CDS
CGCGTTTCTATCGTCCTAAC+TGG 0.284030 4.4:-33937670 None:intergenic
CCGATAAATGCCGGTGCATT+AGG 0.301055 4.4:-33939666 None:intergenic
CACCCAAGTCCTGCAGTTTG+TGG 0.304536 4.4:+33941477 MS.gene052322:CDS
GCTGGACCTGTTGGTTGGTT+TGG 0.311172 4.4:+33941813 MS.gene052322:CDS
GTTCACTAAGTTACTTAAAC+TGG 0.317030 4.4:+33942617 MS.gene052322:intron
AGACAAGCTAACCACGTTAG+AGG 0.324370 4.4:-33939492 None:intergenic
CTTCTTTACTAGGAATGTTA+TGG 0.328879 4.4:-33939253 None:intergenic
ATCCAATCCCAATAGGAAAA+TGG 0.334738 4.4:-33937970 None:intergenic
GCTTCAACTTGCTCCTCAAT+AGG 0.339305 4.4:-33937811 None:intergenic
CCAAAGCTTCACTAGTGATA+TGG 0.351321 4.4:-33940322 None:intergenic
GGCTATGTACAGTCTCAAAA+TGG 0.363690 4.4:+33937723 MS.gene052322:CDS
CCTAATGCACCGGCATTTAT+CGG 0.372337 4.4:+33939666 MS.gene052322:CDS
AGATTCCAATCTTCTTTACT+AGG 0.376208 4.4:-33939263 None:intergenic
GCAAATAAATGTTGGATCCT+TGG 0.384897 4.4:-33941305 None:intergenic
GCAATGCTAACCAAGTTTCC+AGG 0.385429 4.4:-33937910 None:intergenic
TGCTTACCACTACTATTGCT+TGG 0.388809 4.4:+33938777 MS.gene052322:CDS
GGACCTGTTGGTTGGTTTGG+AGG 0.393014 4.4:+33941816 MS.gene052322:CDS
ATTGGGATTGGATATCTATA+AGG 0.399903 4.4:+33937980 MS.gene052322:CDS
ATGCCAGATGAGGTACAAAA+TGG 0.404784 4.4:-33937772 None:intergenic
TGGTCCTCTAGCACGGGTTC+CGG 0.410896 4.4:-33940345 None:intergenic
GTGAGTTTGCCGTTGGCATC+AGG 0.415994 4.4:+33941847 MS.gene052322:CDS
GAAATCTTGCCCTGGAAACT+TGG 0.418146 4.4:+33937900 MS.gene052322:CDS
CAGGTCAGCATTGGTGGAAC+AGG 0.418978 4.4:+33941866 MS.gene052322:CDS
TGCCCTTTGATTCGCGCATA+TGG 0.422545 4.4:+33938292 MS.gene052322:CDS
AGCAAGTTGAAGCAATTGAT+TGG 0.422787 4.4:+33937821 MS.gene052322:CDS
CTTCCTAGATGCTACTTCTC+TGG 0.424133 4.4:+33937868 MS.gene052322:CDS
TTTCTGTGAAATAGTTGCTC+TGG 0.426610 4.4:-33940293 None:intergenic
TCAATGAATGGTTGTAAAGA+AGG 0.426979 4.4:+33937622 None:intergenic
TTTCTACTTCATGATTCCTC+AGG 0.428813 4.4:+33938372 MS.gene052322:CDS
GCTTACCACTACTATTGCTT+GGG 0.431278 4.4:+33938778 MS.gene052322:CDS
GGAAGGAAGCAACCCATACT+TGG 0.437293 4.4:+33942313 MS.gene052322:CDS
TATAGATATCCAATCCCAAT+AGG 0.437928 4.4:-33937977 None:intergenic
GTAAGTCAAGTTCAATTTGA+CGG 0.442874 4.4:-33940382 None:intergenic
CCATATCACTAGTGAAGCTT+TGG 0.446524 4.4:+33940322 MS.gene052322:CDS
GTTGAGTTTAATGAGCTTGA+AGG 0.447276 4.4:+33938746 MS.gene052322:CDS
GGATGCTACCTTTCAATGAA+TGG 0.448779 4.4:+33937610 None:intergenic
AAAACTTGTGCCTCTTCTGT+TGG 0.455039 4.4:-33941504 None:intergenic
CTTGGGATAATGATCTTTGT+TGG 0.458807 4.4:+33938795 MS.gene052322:CDS
GCTTTGATATATGCTGGAAC+TGG 0.459668 4.4:+33942284 MS.gene052322:CDS
AAGCCACAAACTGCAGGACT+TGG 0.460419 4.4:-33941480 None:intergenic
TCTTTGTTGGTCGTGGGAAA+AGG 0.461435 4.4:+33938808 MS.gene052322:CDS
GAGAGTTGAGGTTCCTATTG+AGG 0.466956 4.4:+33937798 MS.gene052322:CDS
AAAGTTCAAGAGAACCAGTT+AGG 0.471129 4.4:+33937656 MS.gene052322:CDS
AATGTTGGAGGAGCTTGCTT+AGG 0.475322 4.4:-33939218 None:intergenic
GCCATTGCAGCTGATGCTAC+TGG 0.478778 4.4:-33937703 None:intergenic
TGGCATCAGGTCAGCATTGG+TGG 0.478970 4.4:+33941860 MS.gene052322:CDS
CCTCCTCCAAACCAACCAAC+AGG 0.481639 4.4:-33941819 None:intergenic
CCTCCATATGCGCGAATCAA+AGG 0.481748 4.4:-33938295 None:intergenic
CCTGTTGGTTGGTTTGGAGG+AGG 0.487475 4.4:+33941819 MS.gene052322:CDS
ACATTCCTAGTAAAGAAGAT+TGG 0.489547 4.4:+33939258 MS.gene052322:CDS
CTAGGTGCTTTGATATATGC+TGG 0.491160 4.4:+33942278 MS.gene052322:CDS
CGTTGGCATCAGGTCAGCAT+TGG 0.491560 4.4:+33941857 MS.gene052322:CDS
GTAAACTCAATGTCGTCCTT+CGG 0.493229 4.4:-33940517 None:intergenic
TGGCTGCTTAATATCAATGT+TGG 0.498602 4.4:-33939233 None:intergenic
TTAATTGAGCAAATAAATGT+TGG 0.499910 4.4:-33941313 None:intergenic
GTTAAGAAACGAAGAGGATG+AGG 0.505866 4.4:+33941343 MS.gene052322:CDS
TTGGTTAGCATTGCTGGTGT+TGG 0.507263 4.4:+33937919 MS.gene052322:CDS
TCAAAACGATTGTAGGTTGA+AGG 0.507970 4.4:+33939612 MS.gene052322:intron
CTCCATATGCGCGAATCAAA+GGG 0.510017 4.4:-33938294 None:intergenic
GCTAGAACTCAAAACATCTC+AGG 0.519609 4.4:+33942346 MS.gene052322:CDS
TTGCCAGAGAAGTAGCATCT+AGG 0.520561 4.4:-33937871 None:intergenic
CTGCTTAATATCAATGTTGG+AGG 0.521541 4.4:-33939230 None:intergenic
ATATGCTGGAACTGGAATAG+TGG 0.522449 4.4:+33942292 MS.gene052322:CDS
ACCAGTAGCATCAGCTGCAA+TGG 0.522993 4.4:+33937702 MS.gene052322:CDS
CTAGTGATGGTCCTCTAGCA+CGG 0.525024 4.4:-33940352 None:intergenic
TTCGCAGGCAGTCTGCGAAA+AGG 0.530662 4.4:+33941247 MS.gene052322:intron
TGTATGCTGGACCTGTTGGT+TGG 0.531912 4.4:+33941808 MS.gene052322:CDS
ATAATGATCTTTGTTGGTCG+TGG 0.536372 4.4:+33938801 MS.gene052322:CDS
TAATGATCTTTGTTGGTCGT+GGG 0.538149 4.4:+33938802 MS.gene052322:CDS
GTTGGAAAGCCACAAACTGC+AGG 0.539573 4.4:-33941486 None:intergenic
TATTTGCTCAATTAACTGGA+AGG 0.540497 4.4:+33941321 MS.gene052322:CDS
AAATGGCTGTGACTGCGAAA+AGG 0.540950 4.4:-33937953 None:intergenic
CCTTCAGCCACCTAATGCAC+CGG 0.546354 4.4:+33939656 MS.gene052322:CDS
TAATGTTTCATCAGAGTGGA+TGG 0.547863 4.4:+33938339 MS.gene052322:CDS
TTGGCCGGAACCCGTGCTAG+AGG 0.556180 4.4:+33940341 MS.gene052322:CDS
GCTCATCCCACTCCAAGTAT+GGG 0.558587 4.4:-33942325 None:intergenic
TTGAACTTGACTTACTTACC+AGG 0.562261 4.4:+33940390 MS.gene052322:CDS
GGCGAGAGTGAGTTTGCCGT+TGG 0.562594 4.4:+33941840 MS.gene052322:CDS
ATCACTAGTGAAGCTTTGGC+CGG 0.564206 4.4:+33940326 MS.gene052322:CDS
TTTGATCGAGGGATGTATGC+TGG 0.570243 4.4:+33941795 MS.gene052322:CDS
AGAGGATTGATATTTACAGT+AGG 0.570825 4.4:-33939474 None:intergenic
GTTCAGAAGTGTTTGATCGA+GGG 0.574223 4.4:+33941784 MS.gene052322:intron
TAGTGATGGTCCTCTAGCAC+GGG 0.574761 4.4:-33940351 None:intergenic
TTGTGGCTTTCCAACAGAAG+AGG 0.579808 4.4:+33941494 MS.gene052322:CDS
TGTTTCTTGAAGTGCCGCGA+TGG 0.581100 4.4:-33938831 None:intergenic
AGCCACAAACTGCAGGACTT+GGG 0.581443 4.4:-33941479 None:intergenic
ACTGTGTTTCCGATAAATGC+CGG 0.585235 4.4:-33939675 None:intergenic
AAGCATACGAAGAAAATTGG+AGG 0.588895 4.4:+33940552 MS.gene052322:CDS
GCTGGAACTGGAATAGTGGA+AGG 0.595266 4.4:+33942296 MS.gene052322:CDS
AACGTGGTTAGCTTGTCTAA+AGG 0.599085 4.4:+33939497 MS.gene052322:CDS
GGGATGTATGCTGGACCTGT+TGG 0.600180 4.4:+33941804 MS.gene052322:CDS
CAATGCTAACCAAGTTTCCA+GGG 0.601314 4.4:-33937909 None:intergenic
CCTTTGATTCGCGCATATGG+AGG 0.602449 4.4:+33938295 MS.gene052322:CDS
AAACGATTGTAGGTTGAAGG+TGG 0.602926 4.4:+33939615 MS.gene052322:intron
GAAGCAACCCATACTTGGAG+TGG 0.603898 4.4:+33942318 MS.gene052322:CDS
TGTTCAGAAGTGTTTGATCG+AGG 0.604089 4.4:+33941783 MS.gene052322:intron
ATAAATGCCGGTGCATTAGG+TGG 0.604297 4.4:-33939663 None:intergenic
AGTAGCATCTAGGAAGCAGA+AGG 0.604523 4.4:-33937861 None:intergenic
GAGTTTAATGAGCTTGAAGG+AGG 0.605355 4.4:+33938749 MS.gene052322:CDS
TGTAGTTACCTTGGTAAGTG+AGG 0.606511 4.4:-33939327 None:intergenic
AAGGAACAGAAATCTTGCCC+TGG 0.617216 4.4:+33937892 MS.gene052322:CDS
GGGATTGGATATCTATAAGG+AGG 0.620357 4.4:+33937983 MS.gene052322:CDS
AGCATCTAGGAAGCAGAAGG+TGG 0.620967 4.4:-33937858 None:intergenic
AAGCAACCCATACTTGGAGT+GGG 0.621209 4.4:+33942319 MS.gene052322:CDS
CCGGTGCATTAGGTGGCTGA+AGG 0.623228 4.4:-33939656 None:intergenic
AAGCTAATGTTTCATCAGAG+TGG 0.624786 4.4:+33938335 MS.gene052322:CDS
CAATGCTGACCTGATGCCAA+CGG 0.626025 4.4:-33941856 None:intergenic
AACTCTCACTATGCCAGATG+AGG 0.629562 4.4:-33937782 None:intergenic
AAATGATTCCTCACTTACCA+AGG 0.633006 4.4:+33939319 MS.gene052322:CDS
AAACTCAGGTTGTTCTAGCG+CGG 0.633096 4.4:+33939436 MS.gene052322:intron
TTGCTTAGGAAACTTTACAA+TGG 0.633615 4.4:-33939204 None:intergenic
TGACGGTCTAGTGCTAGTGA+TGG 0.637405 4.4:-33940365 None:intergenic
TGGAAGGTTAAGAAACGAAG+AGG 0.647415 4.4:+33941337 MS.gene052322:CDS
ATCTGGCATAGTGAGAGTTG+AGG 0.648266 4.4:+33937786 MS.gene052322:CDS
TAGATGCTACTTCTCTGGCA+AGG 0.649242 4.4:+33937873 MS.gene052322:CDS
AAATGATTAGAAAACTGCCA+AGG 0.653684 4.4:+33941288 MS.gene052322:CDS
ATTATCCCAAGCAATAGTAG+TGG 0.661694 4.4:-33938783 None:intergenic
GTCGTGGGAAAAGGCCATCG+CGG 0.682263 4.4:+33938817 MS.gene052322:CDS
ATTGCAGCTGATGCTACTGG+TGG 0.696479 4.4:-33937700 None:intergenic
TAAATATCAATCCTCTAACG+TGG 0.724878 4.4:+33939481 MS.gene052322:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGTATGTTTTATAAATTT+TGG + chr4.4:33940112-33940131 MS.gene052322:intron 10.0%
!!! TTATTTTTTTTCTTTCTTTT+TGG + chr4.4:33940485-33940504 MS.gene052322:intron 10.0%
!! AAATAGTATGTAATAAGAAT+AGG - chr4.4:33940011-33940030 None:intergenic 15.0%
!! ACTTATATGATAAATGTTTA+TGG + chr4.4:33939093-33939112 MS.gene052322:intron 15.0%
!! CAAGTTCATAAAAATTAAAA+TGG - chr4.4:33940265-33940284 None:intergenic 15.0%
!! TCATAATATAGTTTCAAAAA+AGG - chr4.4:33940159-33940178 None:intergenic 15.0%
!!! AATCTTCAATTTTTTTTTAC+CGG + chr4.4:33942207-33942226 MS.gene052322:intron 15.0%
!!! ATGAATTTGTTAACTATATT+TGG + chr4.4:33938046-33938065 MS.gene052322:intron 15.0%
!!! ATTTTTATACTTTTCATTGT+TGG + chr4.4:33940582-33940601 MS.gene052322:intron 15.0%
!!! TATTTTAGAAATTCAAAATG+TGG + chr4.4:33941636-33941655 MS.gene052322:intron 15.0%
!!! TTGTAATTTTAATACATTCA+AGG + chr4.4:33938623-33938642 MS.gene052322:intron 15.0%
!! AAAATATTATCGTATCTACT+AGG + chr4.4:33942007-33942026 MS.gene052322:intron 20.0%
!! AACTAACTTCATAAATTTCA+AGG - chr4.4:33938024-33938043 None:intergenic 20.0%
!! AATTGATGTCTTCAAAAAAA+GGG - chr4.4:33940774-33940793 None:intergenic 20.0%
!! ATATCTTAAAAGTCATCATA+AGG + chr4.4:33940178-33940197 MS.gene052322:intron 20.0%
!! ATTAGAAAATAAGTCATGTT+TGG + chr4.4:33938158-33938177 MS.gene052322:intron 20.0%
!! ATTGTCCTTACTATAAAATA+CGG + chr4.4:33941760-33941779 MS.gene052322:intron 20.0%
!! GAAATTGTGAATTTAGAAAT+GGG - chr4.4:33940839-33940858 None:intergenic 20.0%
!! GTGTTATCTTAAATAAAATG+CGG + chr4.4:33939567-33939586 MS.gene052322:intron 20.0%
!! TAAATGACAACTTAGTTATA+TGG - chr4.4:33941430-33941449 None:intergenic 20.0%
!! TAATTGATGTCTTCAAAAAA+AGG - chr4.4:33940775-33940794 None:intergenic 20.0%
!! TCAGAATATAGTTTCAAAAA+AGG - chr4.4:33940211-33940230 None:intergenic 20.0%
!! TTAATTGAGCAAATAAATGT+TGG - chr4.4:33941316-33941335 None:intergenic 20.0%
!!! AATTGGTTGATTTATAATAG+CGG + chr4.4:33942084-33942103 MS.gene052322:intron 20.0%
!!! AATTTTTAGAATTAAGCTGT+TGG + chr4.4:33941051-33941070 MS.gene052322:intron 20.0%
!!! AGTTTTCTAATCATTTTCTT+TGG - chr4.4:33941284-33941303 None:intergenic 20.0%
!!! ATATAAAAACTGCTGTTTTA+TGG + chr4.4:33940437-33940456 MS.gene052322:intron 20.0%
!!! CGATAATATTTTATACTACT+TGG - chr4.4:33941999-33942018 None:intergenic 20.0%
!!! GTACAATGATATTTGTTTTT+AGG + chr4.4:33940729-33940748 MS.gene052322:intron 20.0%
!!! GTCTTTTGTTACTAATTTTA+TGG - chr4.4:33938587-33938606 None:intergenic 20.0%
!!! GTTTTCCTTATTTACTATTT+TGG - chr4.4:33940989-33941008 None:intergenic 20.0%
!!! TACATGTACTTTTTTTTTTG+CGG - chr4.4:33942468-33942487 None:intergenic 20.0%
!!! TAGATTTTCTTTAGATTATC+AGG + chr4.4:33939125-33939144 MS.gene052322:intron 20.0%
!!! TTAATTGAGATCCTATTTTT+TGG + chr4.4:33942050-33942069 MS.gene052322:intron 20.0%
!!! TTGTGAACTATCTATATTTT+GGG - chr4.4:33938113-33938132 None:intergenic 20.0%
!!! TTTGTGAACTATCTATATTT+TGG - chr4.4:33938114-33938133 None:intergenic 20.0%
!!! TTTTGTCTATGTTCAAAAAT+GGG - chr4.4:33941713-33941732 None:intergenic 20.0%
!!! TTTTTGTCTATGTTCAAAAA+TGG - chr4.4:33941714-33941733 None:intergenic 20.0%
! AAAATATCAAATAGTAGCTG+TGG - chr4.4:33938229-33938248 None:intergenic 25.0%
! AAATAAAAATCACAAGCATC+AGG - chr4.4:33940471-33940490 None:intergenic 25.0%
! AAATAGGATCTCAATTAACT+TGG - chr4.4:33942048-33942067 None:intergenic 25.0%
! AAATGAGTAAATCATCAGTT+TGG - chr4.4:33938681-33938700 None:intergenic 25.0%
! AAATTCATCACATAGAAACA+AGG - chr4.4:33941036-33941055 None:intergenic 25.0%
! AACAAAATCTAACGTACATT+AGG - chr4.4:33940631-33940650 None:intergenic 25.0%
! AATAAAAATCACAAGCATCA+GGG - chr4.4:33940470-33940489 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr4.4:33938971-33938990 None:intergenic 25.0%
! ACATGTATCTGATTCAAATT+TGG - chr4.4:33942497-33942516 None:intergenic 25.0%
! ACTAAGGAAAGAAACATTTA+GGG - chr4.4:33938491-33938510 None:intergenic 25.0%
! AGAACAAGTAGGAAAATATT+TGG - chr4.4:33941582-33941601 None:intergenic 25.0%
! AGTAACAAAAGACATAACTA+AGG + chr4.4:33938594-33938613 MS.gene052322:intron 25.0%
! ATCATGTGAAATTCATTATG+TGG - chr4.4:33940073-33940092 None:intergenic 25.0%
! CAATATCATCGAAATGTATA+GGG - chr4.4:33940897-33940916 None:intergenic 25.0%
! CATTTATTTGCTCAATTAAC+TGG + chr4.4:33941317-33941336 MS.gene052322:CDS 25.0%
! CTTGTAATAAAGTCAAAGTT+AGG + chr4.4:33941664-33941683 MS.gene052322:intron 25.0%
! GATTTACTCATTTATAGCAT+TGG + chr4.4:33938688-33938707 MS.gene052322:intron 25.0%
! GGAAATTGTGAATTTAGAAA+TGG - chr4.4:33940840-33940859 None:intergenic 25.0%
! TAGTAAATAAGGAAAACTAG+AGG + chr4.4:33940992-33941011 MS.gene052322:intron 25.0%
! TCAATATCATCGAAATGTAT+AGG - chr4.4:33940898-33940917 None:intergenic 25.0%
! TGTTCTTTCCAAAACTAATT+TGG + chr4.4:33938406-33938425 MS.gene052322:intron 25.0%
! TTAGGTGATATTGATATGTT+TGG + chr4.4:33941682-33941701 MS.gene052322:intron 25.0%
! TTGAAATTGAAATGCTTATG+TGG + chr4.4:33940914-33940933 MS.gene052322:intron 25.0%
! TTGACGGAGAAAAAAAAAAA+AGG - chr4.4:33939539-33939558 None:intergenic 25.0%
!! AAAGCATTAACAGTTTGATT+CGG - chr4.4:33938088-33938107 None:intergenic 25.0%
!! AACATCTGTTGTTTGAAATA+CGG + chr4.4:33941967-33941986 MS.gene052322:intron 25.0%
!! ACATTTGCAAGTTTTCATAT+AGG + chr4.4:33942253-33942272 MS.gene052322:intron 25.0%
!! ATATGTTTTCTTTTGAACCA+GGG + chr4.4:33939973-33939992 MS.gene052322:intron 25.0%
!! ATGTGAATGCATACATATTT+TGG + chr4.4:33942374-33942393 MS.gene052322:intron 25.0%
!! GTTGAAAATTTTCACTTTGA+AGG + chr4.4:33938254-33938273 MS.gene052322:intron 25.0%
!! TATATGTTTTCTTTTGAACC+AGG + chr4.4:33939972-33939991 MS.gene052322:intron 25.0%
!! TTTTTACTTGAACTGTAACA+TGG - chr4.4:33941372-33941391 None:intergenic 25.0%
!!! ATCTCATGCTTTTTCTTTAT+TGG + chr4.4:33939349-33939368 MS.gene052322:intron 25.0%
!!! GAGTATTGAGATACTAATAA+TGG - chr4.4:33942182-33942201 None:intergenic 25.0%
AAACAACGATGTATGGAAAA+TGG - chr4.4:33941550-33941569 None:intergenic 30.0%
AAACACATTCAAGACTGTTT+GGG + chr4.4:33938915-33938934 MS.gene052322:intron 30.0%
AAATGATTAGAAAACTGCCA+AGG + chr4.4:33941288-33941307 MS.gene052322:CDS 30.0%
AAGCATTAACAGTTTGATTC+GGG - chr4.4:33938087-33938106 None:intergenic 30.0%
AAGTTGTATTATGTAACCCT+AGG + chr4.4:33939845-33939864 MS.gene052322:intron 30.0%
ACATTCCTAGTAAAGAAGAT+TGG + chr4.4:33939258-33939277 MS.gene052322:CDS 30.0%
ACTTTGCAAAGTAAGTGTTA+GGG + chr4.4:33938853-33938872 MS.gene052322:intron 30.0%
AGAGGATTGATATTTACAGT+AGG - chr4.4:33939477-33939496 None:intergenic 30.0%
AGATTCCAATCTTCTTTACT+AGG - chr4.4:33939266-33939285 None:intergenic 30.0%
AGCAACTATTTCACAGAAAA+TGG + chr4.4:33940297-33940316 MS.gene052322:CDS 30.0%
ATACCCGACATAAAAAGATA+AGG - chr4.4:33939744-33939763 None:intergenic 30.0%
ATTGGGATTGGATATCTATA+AGG + chr4.4:33937980-33937999 MS.gene052322:CDS 30.0%
CACTAAGGAAAGAAACATTT+AGG - chr4.4:33938492-33938511 None:intergenic 30.0%
CTCATAGTTTACTGATAAGT+GGG + chr4.4:33939774-33939793 MS.gene052322:intron 30.0%
CTTAAATAAAATGCGGTAGA+AGG + chr4.4:33939574-33939593 MS.gene052322:intron 30.0%
CTTCTTTACTAGGAATGTTA+TGG - chr4.4:33939256-33939275 None:intergenic 30.0%
CTTGTTTGTCTCCAAAAAAT+AGG - chr4.4:33942064-33942083 None:intergenic 30.0%
GAAAATAAGTCATGTTTGGT+TGG + chr4.4:33938162-33938181 MS.gene052322:intron 30.0%
GAAGAAAATGAGCTTTCAAA+TGG - chr4.4:33939405-33939424 None:intergenic 30.0%
GGATTATACATAATAGCATG+AGG - chr4.4:33941077-33941096 None:intergenic 30.0%
GTAAGTCAAGTTCAATTTGA+CGG - chr4.4:33940385-33940404 None:intergenic 30.0%
GTATACATCAAAACGATTGT+AGG + chr4.4:33939605-33939624 MS.gene052322:intron 30.0%
GTATTAGAAACAACGATGTA+TGG - chr4.4:33941557-33941576 None:intergenic 30.0%
GTTCACTAAGTTACTTAAAC+TGG + chr4.4:33942617-33942636 MS.gene052322:intron 30.0%
TAAACACATTCAAGACTGTT+TGG + chr4.4:33938914-33938933 MS.gene052322:intron 30.0%
TAAATATCAATCCTCTAACG+TGG + chr4.4:33939481-33939500 MS.gene052322:CDS 30.0%
TACCCGACATAAAAAGATAA+GGG - chr4.4:33939743-33939762 None:intergenic 30.0%
TATAATAGGCATGCAATAGA+TGG + chr4.4:33940686-33940705 MS.gene052322:intron 30.0%
TATAGATATCCAATCCCAAT+AGG - chr4.4:33937980-33937999 None:intergenic 30.0%
TATTTGCTCAATTAACTGGA+AGG + chr4.4:33941321-33941340 MS.gene052322:CDS 30.0%
TCAAAAAAGTCAATCCAAAC+AGG - chr4.4:33938879-33938898 None:intergenic 30.0%
TCATAAATTTCAAGGAACCA+AGG - chr4.4:33938016-33938035 None:intergenic 30.0%
TCCTTGGATACTGATATAAT+AGG + chr4.4:33940672-33940691 MS.gene052322:intron 30.0%
TCTTAAAAGTCATCATAAGG+AGG + chr4.4:33940181-33940200 MS.gene052322:intron 30.0%
TTGCTTAGGAAACTTTACAA+TGG - chr4.4:33939207-33939226 None:intergenic 30.0%
! ACACCCTTATCTTTTTATGT+CGG + chr4.4:33939737-33939756 MS.gene052322:intron 30.0%
! AGAAAGCATACGAAGAAAAT+TGG + chr4.4:33940549-33940568 MS.gene052322:CDS 30.0%
! ATTTTCTATTATCCAAGCCT+AGG - chr4.4:33939865-33939884 None:intergenic 30.0%
! CAAGTTTTCATATAGGAACT+AGG + chr4.4:33942260-33942279 MS.gene052322:intron 30.0%
! CTCATTTTCTTCTTCCATAT+TGG + chr4.4:33939413-33939432 MS.gene052322:intron 30.0%
! CTTTGTCTCAATCACAATTT+TGG + chr4.4:33940810-33940829 MS.gene052322:intron 30.0%
! GAACACCGTATTTTATAGTA+AGG - chr4.4:33941768-33941787 None:intergenic 30.0%
! GTGTCTTTTGTTAGTTAGTT+TGG + chr4.4:33938528-33938547 MS.gene052322:intron 30.0%
! TATCTTTTTATGTCGGGTAT+GGG + chr4.4:33939744-33939763 MS.gene052322:intron 30.0%
! TCCATCCACAATTTTCAAAA+TGG + chr4.4:33940857-33940876 MS.gene052322:intron 30.0%
! TTAGGCTTGAATCACAATTT+TGG + chr4.4:33940747-33940766 MS.gene052322:intron 30.0%
! TTATCTTTTTATGTCGGGTA+TGG + chr4.4:33939743-33939762 MS.gene052322:intron 30.0%
! TTTTCCTACTTGTTCTTGAA+AGG + chr4.4:33941586-33941605 MS.gene052322:intron 30.0%
! TTTTCTATTATCCAAGCCTA+GGG - chr4.4:33939864-33939883 None:intergenic 30.0%
!! AAGTAAACTCTGAAATTTCC+AGG + chr4.4:33942144-33942163 MS.gene052322:intron 30.0%
!! AGAACACTCAAATTTTAGCA+TGG - chr4.4:33939935-33939954 None:intergenic 30.0%
!! GTCATCCATTTTGAAAATTG+TGG - chr4.4:33940865-33940884 None:intergenic 30.0%
!! TAATGGATTACTGAAATTCC+TGG - chr4.4:33942165-33942184 None:intergenic 30.0%
!! TCCATTTTGAAAATTGTGGA+TGG - chr4.4:33940861-33940880 None:intergenic 30.0%
!! TTGAAGGACCAAATTAGTTT+TGG - chr4.4:33938417-33938436 None:intergenic 30.0%
!! TTTTGGAGACAAACAAGAAT+TGG + chr4.4:33942067-33942086 MS.gene052322:intron 30.0%
!!! ATGTTTTTTCCTCAAATCCT+TGG + chr4.4:33940656-33940675 MS.gene052322:intron 30.0%
!!! ATTAGTTTTGGAAAGAACAC+AGG - chr4.4:33938405-33938424 None:intergenic 30.0%
!!! CATTAGCTTTTGCATTGAAA+CGG - chr4.4:33938324-33938343 None:intergenic 30.0%
!!! TCAACCTGTCAATTTTTTCT+CGG - chr4.4:33938731-33938750 None:intergenic 30.0%
!!! TTAGTTTTGGAAAGAACACA+GGG - chr4.4:33938404-33938423 None:intergenic 30.0%
AAAGTTCAAGAGAACCAGTT+AGG + chr4.4:33937656-33937675 MS.gene052322:CDS 35.0%
AAATGATTCCTCACTTACCA+AGG + chr4.4:33939319-33939338 MS.gene052322:CDS 35.0%
AACAACCTGAGTTTCCAATA+TGG - chr4.4:33939430-33939449 None:intergenic 35.0%
AAGCATACGAAGAAAATTGG+AGG + chr4.4:33940552-33940571 MS.gene052322:CDS 35.0%
AAGCTAATGTTTCATCAGAG+TGG + chr4.4:33938335-33938354 MS.gene052322:CDS 35.0%
AAGTCCTTTCAAGAACAAGT+AGG - chr4.4:33941593-33941612 None:intergenic 35.0%
AATCTTCCTAGTCACATACA+TGG - chr4.4:33939708-33939727 None:intergenic 35.0%
ACTATGCATCTTTGTATTGC+AGG + chr4.4:33939172-33939191 MS.gene052322:intron 35.0%
ACTTCCAAAGTTCCAATCTA+GGG - chr4.4:33941102-33941121 None:intergenic 35.0%
AGGGGCCAAAATAGTAAATA+AGG + chr4.4:33940981-33941000 MS.gene052322:intron 35.0%
AGTTTACTGATAAGTGGGTA+TGG + chr4.4:33939779-33939798 MS.gene052322:intron 35.0%
ATAATGATCTTTGTTGGTCG+TGG + chr4.4:33938801-33938820 MS.gene052322:CDS 35.0%
ATCATCGAAATGTATAGGGT+GGG - chr4.4:33940893-33940912 None:intergenic 35.0%
ATCCAATCCCAATAGGAAAA+TGG - chr4.4:33937973-33937992 None:intergenic 35.0%
ATGATTGTAAGCAGATGCAA+TGG - chr4.4:33941174-33941193 None:intergenic 35.0%
ATGTCACATTCAGTTTGCAT+AGG + chr4.4:33941911-33941930 MS.gene052322:intron 35.0%
ATTATCCCAAGCAATAGTAG+TGG - chr4.4:33938786-33938805 None:intergenic 35.0%
ATTCATCATCCTGTTAACCT+AGG - chr4.4:33941207-33941226 None:intergenic 35.0%
ATTCGTGGTAAAAAACAGTC+CGG - chr4.4:33942229-33942248 None:intergenic 35.0%
CACTTTGCAAAGTAAGTGTT+AGG + chr4.4:33938852-33938871 MS.gene052322:intron 35.0%
CATTCTGCAGTTGGATATAT+AGG + chr4.4:33939894-33939913 MS.gene052322:intron 35.0%
CTATATATCCAACTGCAGAA+TGG - chr4.4:33939896-33939915 None:intergenic 35.0%
CTGCTTAATATCAATGTTGG+AGG - chr4.4:33939233-33939252 None:intergenic 35.0%
CTTGCAAATGTTATGATTCG+TGG - chr4.4:33942244-33942263 None:intergenic 35.0%
CTTGGGATAATGATCTTTGT+TGG + chr4.4:33938795-33938814 MS.gene052322:CDS 35.0%
GATAACACTGCTGAATTTGA+CGG - chr4.4:33939555-33939574 None:intergenic 35.0%
GCAAATAAATGTTGGATCCT+TGG - chr4.4:33941308-33941327 None:intergenic 35.0%
GCCTATTATATCAGTATCCA+AGG - chr4.4:33940676-33940695 None:intergenic 35.0%
GCTCATAGTTTACTGATAAG+TGG + chr4.4:33939773-33939792 MS.gene052322:intron 35.0%
GTTGAGTTTAATGAGCTTGA+AGG + chr4.4:33938746-33938765 MS.gene052322:CDS 35.0%
GTTTCTTTCCTTAGTGAGTT+TGG + chr4.4:33938496-33938515 MS.gene052322:intron 35.0%
TAACACGTTTGACACATTGA+AGG - chr4.4:33938433-33938452 None:intergenic 35.0%
TAATGATCTTTGTTGGTCGT+GGG + chr4.4:33938802-33938821 MS.gene052322:CDS 35.0%
TAATGTTTCATCAGAGTGGA+TGG + chr4.4:33938339-33938358 MS.gene052322:CDS 35.0%
TATAAGGAGGTAATTCACCT+TGG + chr4.4:33937996-33938015 MS.gene052322:intron 35.0%
TATCAAAGTCCTAAGCAACA+AGG - chr4.4:33940420-33940439 None:intergenic 35.0%
TATCAGTATCCAAGGATTTG+AGG - chr4.4:33940668-33940687 None:intergenic 35.0%
TATCATCGAAATGTATAGGG+TGG - chr4.4:33940894-33940913 None:intergenic 35.0%
TCTTTAGATTATCAGGACTC+AGG + chr4.4:33939132-33939151 MS.gene052322:intron 35.0%
TGAAATAGCATGTTGAGTGT+TGG - chr4.4:33941139-33941158 None:intergenic 35.0%
TGGCTGCTTAATATCAATGT+TGG - chr4.4:33939236-33939255 None:intergenic 35.0%
TGTATAATCCAACCCTAGAT+TGG + chr4.4:33941087-33941106 MS.gene052322:intron 35.0%
TTCAAAGACCAAACTCACTA+AGG - chr4.4:33938507-33938526 None:intergenic 35.0%
TTCTTCCATATTGGAAACTC+AGG + chr4.4:33939422-33939441 MS.gene052322:intron 35.0%
TTGAACTTGACTTACTTACC+AGG + chr4.4:33940390-33940409 MS.gene052322:CDS 35.0%
TTTCTACTTCATGATTCCTC+AGG + chr4.4:33938372-33938391 MS.gene052322:CDS 35.0%
TTTCTGTGAAATAGTTGCTC+TGG - chr4.4:33940296-33940315 None:intergenic 35.0%
! AGCAAGTTGAAGCAATTGAT+TGG + chr4.4:33937821-33937840 MS.gene052322:CDS 35.0%
! AGCAATCTTTTTGCAGTGAA+TGG - chr4.4:33942412-33942431 None:intergenic 35.0%
! CAATCATTTTAGACCTTCCT+AGG + chr4.4:33941187-33941206 MS.gene052322:intron 35.0%
! CACCCTTATCTTTTTATGTC+GGG + chr4.4:33939738-33939757 MS.gene052322:intron 35.0%
! TCAAAACGATTGTAGGTTGA+AGG + chr4.4:33939612-33939631 MS.gene052322:intron 35.0%
!!! AGAGGCACAAGTTTTAATTG+CGG + chr4.4:33941512-33941531 MS.gene052322:CDS 35.0%
!!! CAAGTTTTAATTGCGGAAAC+AGG + chr4.4:33941519-33941538 MS.gene052322:CDS 35.0%
!!! CAATCTACTTTTTGTCTCAG+AGG - chr4.4:33942648-33942667 None:intergenic 35.0%
!!! TTTTTGGTTATACAGTCCGA+AGG + chr4.4:33940501-33940520 MS.gene052322:intron 35.0%
AAAACTTGTGCCTCTTCTGT+TGG - chr4.4:33941507-33941526 None:intergenic 40.0%
AATAGTAGCTGTGGCATAGA+AGG - chr4.4:33938220-33938239 None:intergenic 40.0%
ACTGTGTTTCCGATAAATGC+CGG - chr4.4:33939678-33939697 None:intergenic 40.0%
ACTGTTTGGGAGAGCTTAAT+TGG + chr4.4:33938928-33938947 MS.gene052322:intron 40.0%
AGCATGAGATGTAGTTACCT+TGG - chr4.4:33939339-33939358 None:intergenic 40.0%
AGTATGCCATGTATGTGACT+AGG + chr4.4:33939699-33939718 MS.gene052322:intron 40.0%
ATAGGCATGCAATAGATGGA+AGG + chr4.4:33940690-33940709 MS.gene052322:intron 40.0%
ATAGGTTAGAACAACAACCC+TGG - chr4.4:33939993-33940012 None:intergenic 40.0%
ATATGCTGGAACTGGAATAG+TGG + chr4.4:33942292-33942311 MS.gene052322:CDS 40.0%
ATCATCCTGTTAACCTAGGA+AGG - chr4.4:33941203-33941222 None:intergenic 40.0%
ATGCCAGATGAGGTACAAAA+TGG - chr4.4:33937775-33937794 None:intergenic 40.0%
CAATGCTAACCAAGTTTCCA+GGG - chr4.4:33937912-33937931 None:intergenic 40.0%
CCAAAGCTTCACTAGTGATA+TGG - chr4.4:33940325-33940344 None:intergenic 40.0%
CCATATCACTAGTGAAGCTT+TGG + chr4.4:33940322-33940341 MS.gene052322:CDS 40.0%
CCGATAGTGTTGTCAAATAG+CGG + chr4.4:33942563-33942582 MS.gene052322:intron 40.0%
CCGCTATTTGACAACACTAT+CGG - chr4.4:33942566-33942585 None:intergenic 40.0%
CTAGCCGAGAAAAAATTGAC+AGG + chr4.4:33938724-33938743 MS.gene052322:intron 40.0%
CTAGGTGCTTTGATATATGC+TGG + chr4.4:33942278-33942297 MS.gene052322:CDS 40.0%
GAAAACAAGCGCGTAGTTAA+AGG - chr4.4:33941230-33941249 None:intergenic 40.0%
GACACTACCTCACACATTTA+GGG + chr4.4:33938654-33938673 MS.gene052322:intron 40.0%
GACTTCCAAAGTTCCAATCT+AGG - chr4.4:33941103-33941122 None:intergenic 40.0%
GAGTTTAATGAGCTTGAAGG+AGG + chr4.4:33938749-33938768 MS.gene052322:CDS 40.0%
GCTAGAACTCAAAACATCTC+AGG + chr4.4:33942346-33942365 MS.gene052322:CDS 40.0%
GCTTACCACTACTATTGCTT+GGG + chr4.4:33938778-33938797 MS.gene052322:CDS 40.0%
GCTTTGATATATGCTGGAAC+TGG + chr4.4:33942284-33942303 MS.gene052322:CDS 40.0%
GGCTATGTACAGTCTCAAAA+TGG + chr4.4:33937723-33937742 MS.gene052322:CDS 40.0%
GGGATTGGATATCTATAAGG+AGG + chr4.4:33937983-33938002 MS.gene052322:CDS 40.0%
GTAAACTCAATGTCGTCCTT+CGG - chr4.4:33940520-33940539 None:intergenic 40.0%
GTATTATGTAACCCTAGGCT+TGG + chr4.4:33939850-33939869 MS.gene052322:intron 40.0%
GTTAAGAAACGAAGAGGATG+AGG + chr4.4:33941343-33941362 MS.gene052322:CDS 40.0%
TAGGTGGCTGAAGGAAAAAT+TGG - chr4.4:33939650-33939669 None:intergenic 40.0%
TCTAGGCAGATTCTCACTTA+GGG + chr4.4:33940962-33940981 MS.gene052322:intron 40.0%
TGACACTACCTCACACATTT+AGG + chr4.4:33938653-33938672 MS.gene052322:intron 40.0%
TGATAAGTGGGTATGGTTCA+GGG + chr4.4:33939786-33939805 MS.gene052322:intron 40.0%
TGCTTACCACTACTATTGCT+TGG + chr4.4:33938777-33938796 MS.gene052322:CDS 40.0%
TGGAAGGTTAAGAAACGAAG+AGG + chr4.4:33941337-33941356 MS.gene052322:CDS 40.0%
TGTAGTTACCTTGGTAAGTG+AGG - chr4.4:33939330-33939349 None:intergenic 40.0%
TTAGACCTTCCTAGGTTAAC+AGG + chr4.4:33941195-33941214 MS.gene052322:intron 40.0%
TTAGATTATCAGGACTCAGG+AGG + chr4.4:33939135-33939154 MS.gene052322:intron 40.0%
! AAACGATTGTAGGTTGAAGG+TGG + chr4.4:33939615-33939634 MS.gene052322:intron 40.0%
! CTTATTTCCACAAGCTCTGA+AGG + chr4.4:33938985-33939004 MS.gene052322:intron 40.0%
! GTTTTCACTTCAACTCGCTT+TGG + chr4.4:33941734-33941753 MS.gene052322:intron 40.0%
! TCTCCATTTTGTACCTCATC+TGG + chr4.4:33937769-33937788 MS.gene052322:CDS 40.0%
!! AACGTGGTTAGCTTGTCTAA+AGG + chr4.4:33939497-33939516 MS.gene052322:CDS 40.0%
!! AGCCATTTTCCTATTGGGAT+TGG + chr4.4:33937968-33937987 MS.gene052322:CDS 40.0%
!! AGTCACAGCCATTTTCCTAT+TGG + chr4.4:33937962-33937981 MS.gene052322:CDS 40.0%
!! GTCACAGCCATTTTCCTATT+GGG + chr4.4:33937963-33937982 MS.gene052322:CDS 40.0%
!! GTTAGCTTGTCTAAAGGTAC+TGG + chr4.4:33939503-33939522 MS.gene052322:intron 40.0%
!! GTTCAGAAGTGTTTGATCGA+GGG + chr4.4:33941784-33941803 MS.gene052322:intron 40.0%
!! TGTTCAGAAGTGTTTGATCG+AGG + chr4.4:33941783-33941802 MS.gene052322:intron 40.0%
AAATGGCTGTGACTGCGAAA+AGG - chr4.4:33937956-33937975 None:intergenic 45.0%
AACTCTCACTATGCCAGATG+AGG - chr4.4:33937785-33937804 None:intergenic 45.0%
AAGCAACCCATACTTGGAGT+GGG + chr4.4:33942319-33942338 MS.gene052322:CDS 45.0%
AAGCTATCCTTCAGAGCTTG+TGG - chr4.4:33938995-33939014 None:intergenic 45.0%
AAGGAACAGAAATCTTGCCC+TGG + chr4.4:33937892-33937911 MS.gene052322:CDS 45.0%
AGACAAGCTAACCACGTTAG+AGG - chr4.4:33939495-33939514 None:intergenic 45.0%
AGTAAGTGTTAGGGCCTGTT+TGG + chr4.4:33938862-33938881 MS.gene052322:intron 45.0%
AGTAGCATCTAGGAAGCAGA+AGG - chr4.4:33937864-33937883 None:intergenic 45.0%
ATAAATGCCGGTGCATTAGG+TGG - chr4.4:33939666-33939685 None:intergenic 45.0%
ATAAGTGGGTATGGTTCAGG+GGG + chr4.4:33939788-33939807 MS.gene052322:intron 45.0%
ATCTGGCATAGTGAGAGTTG+AGG + chr4.4:33937786-33937805 MS.gene052322:CDS 45.0%
CCAACCCTAGATTGGAACTT+TGG + chr4.4:33941095-33941114 MS.gene052322:intron 45.0%
CCTAAGCAACAAGGTAAACC+TGG - chr4.4:33940411-33940430 None:intergenic 45.0%
CTAGGCAGATTCTCACTTAG+GGG + chr4.4:33940963-33940982 MS.gene052322:intron 45.0%
CTCCATATGCGCGAATCAAA+GGG - chr4.4:33938297-33938316 None:intergenic 45.0%
CTGATAAGTGGGTATGGTTC+AGG + chr4.4:33939785-33939804 MS.gene052322:intron 45.0%
GAAATCTTGCCCTGGAAACT+TGG + chr4.4:33937900-33937919 MS.gene052322:CDS 45.0%
GAGAGTTGAGGTTCCTATTG+AGG + chr4.4:33937798-33937817 MS.gene052322:CDS 45.0%
GATAAGTGGGTATGGTTCAG+GGG + chr4.4:33939787-33939806 MS.gene052322:intron 45.0%
GCAATGCTAACCAAGTTTCC+AGG - chr4.4:33937913-33937932 None:intergenic 45.0%
GGAAACTTGGTTAGCATTGC+TGG + chr4.4:33937913-33937932 MS.gene052322:CDS 45.0%
GTCTAGGCAGATTCTCACTT+AGG + chr4.4:33940961-33940980 MS.gene052322:intron 45.0%
GTTTGGTCCCTAAATGTGTG+AGG - chr4.4:33938664-33938683 None:intergenic 45.0%
TACTGCAACCATTCTGCAGT+TGG + chr4.4:33939885-33939904 MS.gene052322:intron 45.0%
TCGATGATGTGACACTGTCT+AGG + chr4.4:33940945-33940964 MS.gene052322:intron 45.0%
TCTTTGTTGGTCGTGGGAAA+AGG + chr4.4:33938808-33938827 MS.gene052322:CDS 45.0%
TTGCCAGAGAAGTAGCATCT+AGG - chr4.4:33937874-33937893 None:intergenic 45.0%
TTGGTTAGCATTGCTGGTGT+TGG + chr4.4:33937919-33937938 MS.gene052322:CDS 45.0%
TTGTGGCTTTCCAACAGAAG+AGG + chr4.4:33941494-33941513 MS.gene052322:CDS 45.0%
TTTGATCGAGGGATGTATGC+TGG + chr4.4:33941795-33941814 MS.gene052322:CDS 45.0%
! AAACTCAGGTTGTTCTAGCG+CGG + chr4.4:33939436-33939455 MS.gene052322:intron 45.0%
! AATGTTGGAGGAGCTTGCTT+AGG - chr4.4:33939221-33939240 None:intergenic 45.0%
! ATCACTAGTGAAGCTTTGGC+CGG + chr4.4:33940326-33940345 MS.gene052322:CDS 45.0%
! CCAAAGTTCCAATCTAGGGT+TGG - chr4.4:33941098-33941117 None:intergenic 45.0%
! CCAGGTTTACCTTGTTGCTT+AGG + chr4.4:33940408-33940427 MS.gene052322:intron 45.0%
! CCTAATGCACCGGCATTTAT+CGG + chr4.4:33939666-33939685 MS.gene052322:CDS 45.0%
! CTTCCTAGATGCTACTTCTC+TGG + chr4.4:33937868-33937887 MS.gene052322:CDS 45.0%
! GCTTCAACTTGCTCCTCAAT+AGG - chr4.4:33937814-33937833 None:intergenic 45.0%
! TAGATGCTACTTCTCTGGCA+AGG + chr4.4:33937873-33937892 MS.gene052322:CDS 45.0%
! TCATCAGAGTGGATGGCTTT+TGG + chr4.4:33938346-33938365 MS.gene052322:CDS 45.0%
! TGTGTGAGGTAGTGTCACTA+TGG - chr4.4:33938650-33938669 None:intergenic 45.0%
AAGCCACAAACTGCAGGACT+TGG - chr4.4:33941483-33941502 None:intergenic 50.0%
ACCAGTAGCATCAGCTGCAA+TGG + chr4.4:33937702-33937721 MS.gene052322:CDS 50.0%
AGCATCTAGGAAGCAGAAGG+TGG - chr4.4:33937861-33937880 None:intergenic 50.0%
AGCCACAAACTGCAGGACTT+GGG - chr4.4:33941482-33941501 None:intergenic 50.0%
AGCTCATCCCACTCCAAGTA+TGG - chr4.4:33942329-33942348 None:intergenic 50.0%
ATTGCAGCTGATGCTACTGG+TGG - chr4.4:33937703-33937722 None:intergenic 50.0%
CAATGCTGACCTGATGCCAA+CGG - chr4.4:33941859-33941878 None:intergenic 50.0%
CCGATAAATGCCGGTGCATT+AGG - chr4.4:33939669-33939688 None:intergenic 50.0%
CCTCCATATGCGCGAATCAA+AGG - chr4.4:33938298-33938317 None:intergenic 50.0%
CGCGTTTCTATCGTCCTAAC+TGG - chr4.4:33937673-33937692 None:intergenic 50.0%
CTAGTGATGGTCCTCTAGCA+CGG - chr4.4:33940355-33940374 None:intergenic 50.0%
GAAGCAACCCATACTTGGAG+TGG + chr4.4:33942318-33942337 MS.gene052322:CDS 50.0%
GCTCATCCCACTCCAAGTAT+GGG - chr4.4:33942328-33942347 None:intergenic 50.0%
GGAAGGAAGCAACCCATACT+TGG + chr4.4:33942313-33942332 MS.gene052322:CDS 50.0%
GTTGGAAAGCCACAAACTGC+AGG - chr4.4:33941489-33941508 None:intergenic 50.0%
TAGCTGTGGCATAGAAGGCA+GGG - chr4.4:33938215-33938234 None:intergenic 50.0%
TAGTGATGGTCCTCTAGCAC+GGG - chr4.4:33940354-33940373 None:intergenic 50.0%
TGACGGTCTAGTGCTAGTGA+TGG - chr4.4:33940368-33940387 None:intergenic 50.0%
TGTATGCTGGACCTGTTGGT+TGG + chr4.4:33941808-33941827 MS.gene052322:CDS 50.0%
TTATGTCGGGTATGGGCGTA+TGG + chr4.4:33939751-33939770 MS.gene052322:intron 50.0%
! CCTTTGATTCGCGCATATGG+AGG + chr4.4:33938295-33938314 MS.gene052322:CDS 50.0%
! GCTGGAACTGGAATAGTGGA+AGG + chr4.4:33942296-33942315 MS.gene052322:CDS 50.0%
! TGCCCTTTGATTCGCGCATA+TGG + chr4.4:33938292-33938311 MS.gene052322:CDS 50.0%
!! AACTACGCGCTTGTTTTCGC+AGG + chr4.4:33941232-33941251 MS.gene052322:intron 50.0%
!! TGTTTCTTGAAGTGCCGCGA+TGG - chr4.4:33938834-33938853 None:intergenic 50.0%
CACCCAAGTCCTGCAGTTTG+TGG + chr4.4:33941477-33941496 MS.gene052322:CDS 55.0%
CCTCCTCCAAACCAACCAAC+AGG - chr4.4:33941822-33941841 None:intergenic 55.0%
CCTTCAGCCACCTAATGCAC+CGG + chr4.4:33939656-33939675 MS.gene052322:CDS 55.0%
CGTTGGCATCAGGTCAGCAT+TGG + chr4.4:33941857-33941876 MS.gene052322:CDS 55.0%
GAACACAGGGTATGCACCTG+AGG - chr4.4:33938391-33938410 None:intergenic 55.0%
GCCATTGCAGCTGATGCTAC+TGG - chr4.4:33937706-33937725 None:intergenic 55.0%
GGGATGTATGCTGGACCTGT+TGG + chr4.4:33941804-33941823 MS.gene052322:CDS 55.0%
GTAGCTGTGGCATAGAAGGC+AGG - chr4.4:33938216-33938235 None:intergenic 55.0%
GTGAGTTTGCCGTTGGCATC+AGG + chr4.4:33941847-33941866 MS.gene052322:CDS 55.0%
TAGAAGGCAGGGTGCAGAAG+AGG - chr4.4:33938204-33938223 None:intergenic 55.0%
TTCGCAGGCAGTCTGCGAAA+AGG + chr4.4:33941247-33941266 MS.gene052322:intron 55.0%
! GCTGGACCTGTTGGTTGGTT+TGG + chr4.4:33941813-33941832 MS.gene052322:CDS 55.0%
! TGGCATCAGGTCAGCATTGG+TGG + chr4.4:33941860-33941879 MS.gene052322:CDS 55.0%
!! CAGGTCAGCATTGGTGGAAC+AGG + chr4.4:33941866-33941885 MS.gene052322:CDS 55.0%
!! CCTGTTGGTTGGTTTGGAGG+AGG + chr4.4:33941819-33941838 MS.gene052322:CDS 55.0%
!! GGACCTGTTGGTTGGTTTGG+AGG + chr4.4:33941816-33941835 MS.gene052322:CDS 55.0%
CCGGTGCATTAGGTGGCTGA+AGG - chr4.4:33939659-33939678 None:intergenic 60.0%
GGCGAGAGTGAGTTTGCCGT+TGG + chr4.4:33941840-33941859 MS.gene052322:CDS 60.0%
GTCGTGGGAAAAGGCCATCG+CGG + chr4.4:33938817-33938836 MS.gene052322:CDS 60.0%
TGGTCCTCTAGCACGGGTTC+CGG - chr4.4:33940348-33940367 None:intergenic 60.0%
TTGGCCGGAACCCGTGCTAG+AGG + chr4.4:33940341-33940360 MS.gene052322:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 33937625 33942674 33937625 ID=MS.gene052322
chr4.4 mRNA 33937625 33942674 33937625 ID=MS.gene052322.t1;Parent=MS.gene052322
chr4.4 exon 33937625 33938004 33937625 ID=MS.gene052322.t1.exon1;Parent=MS.gene052322.t1
chr4.4 CDS 33937625 33938004 33937625 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33938276 33938393 33938276 ID=MS.gene052322.t1.exon2;Parent=MS.gene052322.t1
chr4.4 CDS 33938276 33938393 33938276 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33938746 33938862 33938746 ID=MS.gene052322.t1.exon3;Parent=MS.gene052322.t1
chr4.4 CDS 33938746 33938862 33938746 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33939194 33939340 33939194 ID=MS.gene052322.t1.exon4;Parent=MS.gene052322.t1
chr4.4 CDS 33939194 33939340 33939194 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33939444 33939518 33939444 ID=MS.gene052322.t1.exon5;Parent=MS.gene052322.t1
chr4.4 CDS 33939444 33939518 33939444 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33939627 33939695 33939627 ID=MS.gene052322.t1.exon6;Parent=MS.gene052322.t1
chr4.4 CDS 33939627 33939695 33939627 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33940293 33940411 33940293 ID=MS.gene052322.t1.exon7;Parent=MS.gene052322.t1
chr4.4 CDS 33940293 33940411 33940293 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33940516 33940573 33940516 ID=MS.gene052322.t1.exon8;Parent=MS.gene052322.t1
chr4.4 CDS 33940516 33940573 33940516 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33941254 33941364 33941254 ID=MS.gene052322.t1.exon9;Parent=MS.gene052322.t1
chr4.4 CDS 33941254 33941364 33941254 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33941456 33941540 33941456 ID=MS.gene052322.t1.exon10;Parent=MS.gene052322.t1
chr4.4 CDS 33941456 33941540 33941456 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33941790 33941887 33941790 ID=MS.gene052322.t1.exon11;Parent=MS.gene052322.t1
chr4.4 CDS 33941790 33941887 33941790 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33942275 33942367 33942275 ID=MS.gene052322.t1.exon12;Parent=MS.gene052322.t1
chr4.4 CDS 33942275 33942367 33942275 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
chr4.4 exon 33942618 33942674 33942618 ID=MS.gene052322.t1.exon13;Parent=MS.gene052322.t1
chr4.4 CDS 33942618 33942674 33942618 ID=cds.MS.gene052322.t1;Parent=MS.gene052322.t1
Gene Sequence

>MS.gene052322

ATGAATGGTTGTAAAGAAGGAGAAATAAATAAAAGTTCAAGAGAACCAGTTAGGACGATAGAAACGCGAACATTGCCACCAGTAGCATCAGCTGCAATGGCTATGTACAGTCTCAAAATGGCTATTTCAGAGCTAAAAGAAATCTCTCCATTTTGTACCTCATCTGGCATAGTGAGAGTTGAGGTTCCTATTGAGGAGCAAGTTGAAGCAATTGATTGGCTTCATTCACAAAACCACCTTCTGCTTCCTAGATGCTACTTCTCTGGCAAGGAACAGAAATCTTGCCCTGGAAACTTGGTTAGCATTGCTGGTGTTGGTTCTGCTGTTTCCTTTTCGCAGTCACAGCCATTTTCCTATTGGGATTGGATATCTATAAGGAGGTAATTCACCTTGGTTCCTTGAAATTTATGAAGTTAGTTTTATGAATTTGTTAACTATATTTGGTTTTGCTAACTTCTTCCCGAATCAAACTGTTAATGCTTTGTCCCAAAATATAGATAGTTCACAAACTGAACTGATAGTTGAAATTAATAATTAGAAAATAAGTCATGTTTGGTTGGCATGATAGCTGATAATCCTCTTCTGCACCCTGCCTTCTATGCCACAGCTACTATTTGATATTTTTTGTTGTTGAAAATTTTCACTTTGAAGGTTTCTTTCTGAGAGCTGCCCTTTGATTCGCGCATATGGAGGTATCCGTTTCAATGCAAAAGCTAATGTTTCATCAGAGTGGATGGCTTTTGGTTCTTTCTACTTCATGATTCCTCAGGTGCATACCCTGTGTTCTTTCCAAAACTAATTTGGTCCTTCAATGTGTCAAACGTGTTATTATAGTCTTTGAATGTATGAAATTATAAAAACATCCCTAAATGTTTCTTTCCTTAGTGAGTTTGGTCTTTGAATGTGTCTTTTGTTAGTTAGTTTGGTCATCGAATATCTCTTTCATCAATGAGTTTAGTCCATAAAATTAGTAACAAAAGACATAACTAAGGATGTTTTTGTAATTTTAATACATTCAAGGACCATAGTGACACTACCTCACACATTTAGGGACCAAACTGATGATTTACTCATTTATAGCATTGGCAGTCAGAGATATCTAGCCGAGAAAAAATTGACAGGTTGAGTTTAATGAGCTTGAAGGAGGATCAATGCTTACCACTACTATTGCTTGGGATAATGATCTTTGTTGGTCGTGGGAAAAGGCCATCGCGGCACTTCAAGAAACACTTTGCAAAGTAAGTGTTAGGGCCTGTTTGGATTGACTTTTTTGAGTTTATCTACTAGCATAAACACATTCAAGACTGTTTGGGAGAGCTTAATTGGAACAGCTTATGACATGTCCATAAGTTGTTTTCAGCTTATTTCCACAAGCTCTGAAGGATAGCTTATGAAAAAAACTTATCGCTTATTTCAAAACACTTCATTTCATTTTATCTTTTGTTAGAGAAATAGCTTATAGATAAGCACTTATATGATAAATGTTTATGGCTGCTTAAGTAGATTTTCTTTAGATTATCAGGACTCAGGAGGAAGACTTTGTTGAAACTATGCATCTTTGTATTGCAGGTTTCTACTTCCATTGTAAAGTTTCCTAAGCAAGCTCCTCCAACATTGATATTAAGCAGCCATAACATTCCTAGTAAAGAAGATTGGAATCTTGCTGTTAATAGAGCTTTGCAGATGATAGAGCAAAATGATTCCTCACTTACCAAGGTAACTACATCTCATGCTTTTTCTTTATTGGATTTTGAATCATTTCTTGAGTTGCAAGAAACCATTTGAAAGCTCATTTTCTTCTTCCATATTGGAAACTCAGGTTGTTCTAGCGCGGAGCACTAGAGTAGTGCCTACTGTAAATATCAATCCTCTAACGTGGTTAGCTTGTCTAAAGGTACTGGAGTTTTCTTTCCTTTTTTTTTTTTCTCCGTCAAATTCAGCAGTGTTATCTTAAATAAAATGCGGTAGAAGGTTTCTTACGTATACATCAAAACGATTGTAGGTTGAAGGTGGAAATGCTTACCAATTTTTCCTTCAGCCACCTAATGCACCGGCATTTATCGGAAACACAGTAAGTATGCCATGTATGTGACTAGGAAGATTTATATATTCACACCCTTATCTTTTTATGTCGGGTATGGGCGTATGGCTCATAGTTTACTGATAAGTGGGTATGGTTCAGGGGGTAAACTTGTAAACTGAACTATAGTTTTAAAACACAAGTTGTATTATGTAACCCTAGGCTTGGATAATAGAAAATTACTGCAACCATTCTGCAGTTGGATATATAGGTATAATTGCTGATTTCCATGCTAAAATTTGAGTGTTCTTTGTTTGCATTCTTTTATATATGTTTTCTTTTGAACCAGGGTTGTTGTTCTAACCTATTCTTATTACATACTATTTCAAATTTTCAAGATATGCTGAAATTTCTACAAAATATATCCACATAATGAATTTCACATGATATCTTAAGTTACATTCTAATTAGTATGTTTTATAAATTTTGGTCAATAGCATAATTTTGTTTACCTTTTTTGAAACTATATTATGATATCTTAAAAGTCATCATAAGGAGGACAACCTTTTTTGAAACTATATTCTGAATTGAATGAGTAATGATACATTTTTATGTTTCCATTTTAATTTTTATGAACTTGATGAATAGCCAGAGCAACTATTTCACAGAAAATGGCTCCATATCACTAGTGAAGCTTTGGCCGGAACCCGTGCTAGAGGACCATCACTAGCACTAGACCGTCAAATTGAACTTGACTTACTTACCAGGTTTACCTTGTTGCTTAGGACTTTGATATAAAAACTGCTGTTTTATGGATGTTTTCCCTGATGCTTGTGATTTTTATTTTTTTTCTTTCTTTTTGGTTATACAGTCCGAAGGACGACATTGAGTTTACTATAGTAAGAGAAAGCATACGAAGAAAATTGGAGGTATGTTTATTTTTATACTTTTCATTGTTGGCGCTTTTGCTAAAGTACACATTTCCTAATGTACGTTAGATTTTGTTTCTAAATGTTTTTTCCTCAAATCCTTGGATACTGATATAATAGGCATGCAATAGATGGAAGGAAGAGATTCAGTTTCTGTACAATGATATTTGTTTTTAGGCTTGAATCACAATTTTGGTCCCTTTTTTTGAAGACATCAATTATGTTTTTGAATACAACTTTGTCTCAATCACAATTTTGGTCGCCCATTTCTAAATTCACAATTTCCATCCACAATTTTCAAAATGGATGACTTTTTCCCACCCTATACATTTCGATGATATTGAAATTGAAATGCTTATGTGGCAAGTAGATCGATGATGTGACACTGTCTAGGCAGATTCTCACTTAGGGGCCAAAATAGTAAATAAGGAAAACTAGAGGAACTAAATTTTATTTAAGCCTTGTTTCTATGTGATGAATTTTTAGAATTAAGCTGTTGGCCTCATGCTATTATGTATAATCCAACCCTAGATTGGAACTTTGGAAGTCTGAACTGTATAATCCAACACTCAACATGCTATTTCATTTTGCATAATACCATTGCATCTGCTTACAATCATTTTAGACCTTCCTAGGTTAACAGGATGATGAATCCTTTAACTACGCGCTTGTTTTCGCAGGCAGTCTGCGAAAAGGTTATAATCGAGCCAAAGAAAATGATTAGAAAACTGCCAAGGATCCAACATTTATTTGCTCAATTAACTGGAAGGTTAAGAAACGAAGAGGATGAGGTAACCATGTTACAGTTCAAGTAAAAATCTTTATTAATGAAAGTAACTTTATTTAATTCACACCATATAACTAAGTTGTCATTTATTTTAGTTTGAAATTTTGTCATCACTTCACCCAAGTCCTGCAGTTTGTGGCTTTCCAACAGAAGAGGCACAAGTTTTAATTGCGGAAACAGGTATATCCATTTTCCATACATCGTTGTTTCTAATACAACCAAATATTTTCCTACTTGTTCTTGAAAGGACTTTTAGCCTAAGCATATATGTTTTTTATTTTAGAAATTCAAAATGTGGTATAACTTGTAATAAAGTCAAAGTTAGGTGATATTGATATGTTTGGTAAAACCCATTTTTGAACATAGACAAAAAGTTTTCACTTCAACTCGCTTTGGTAAATTGTCCTTACTATAAAATACGGTGTTCAGAAGTGTTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGGCGAGAGTGAGTTTGCCGTTGGCATCAGGTCAGCATTGGTGGAACAGGTTAGCTATATAATCTTTTTTCAATGTCACATTCAGTTTGCATAGGTTGACATTTTCATAATATCACGTTCATGTTTCTAACATCTGTTGTTTGAAATACGGTTTTCGCCAAGTAGTATAAAATATTATCGTATCTACTAGGAGCAGTCAAGAATTACCAAGTTAATTGAGATCCTATTTTTTGGAGACAAACAAGAATTGGTTGATTTATAATAGCGGAAGCGAGAACAATAACAAATATTTGAAAATTATGCAAAAGTAAACTCTGAAATTTCCAGGAATTTCAGTAATCCATTATTAGTATCTCAATACTCACTTTAATCTTCAATTTTTTTTTACCGGACTGTTTTTTACCACGAATCATAACATTTGCAAGTTTTCATATAGGAACTAGGTGCTTTGATATATGCTGGAACTGGAATAGTGGAAGGAAGCAACCCATACTTGGAGTGGGATGAGCTAGAACTCAAAACATCTCAGGTGTGTATGTGAATGCATACATATTTTGGCATACATACATTCCATTCACTGCAAAAAGATTGCTTGCAAGTTTGTTACTTCTTCTAAAATGAAATATCCGCAAAAAAAAAAGTACATGTATCTAGTCCAAATTTGAATCAGATACATGTACTTGTTCGTTTATATTTCATTCTAGAGTTGTACTTCATTTTATTTCCGATAGTGTTGTCAAATAGCGGCACTTTTATATGTACGTTGATTTGTTTTGCAGTTCACTAAGTTACTTAAACTGGACTTGCCTCTGAGACAAAAAGTAGATTGTAAATGA

Protein sequence

>MS.gene052322.t1

MNGCKEGEINKSSREPVRTIETRTLPPVASAAMAMYSLKMAISELKEISPFCTSSGIVRVEVPIEEQVEAIDWLHSQNHLLLPRCYFSGKEQKSCPGNLVSIAGVGSAVSFSQSQPFSYWDWISIRRFLSESCPLIRAYGGIRFNAKANVSSEWMAFGSFYFMIPQVEFNELEGGSMLTTTIAWDNDLCWSWEKAIAALQETLCKVSTSIVKFPKQAPPTLILSSHNIPSKEDWNLAVNRALQMIEQNDSSLTKVVLARSTRVVPTVNINPLTWLACLKVEGGNAYQFFLQPPNAPAFIGNTPEQLFHRKWLHITSEALAGTRARGPSLALDRQIELDLLTSPKDDIEFTIVRESIRRKLEAVCEKVIIEPKKMIRKLPRIQHLFAQLTGRLRNEEDEFEILSSLHPSPAVCGFPTEEAQVLIAETEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEQELGALIYAGTGIVEGSNPYLEWDELELKTSQFTKLLKLDLPLRQKVDCK