Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83123.t1 | AES59867.2 | 94.5 | 914 | 28 | 1 | 6 | 919 | 93 | 984 | 0.00E+00 | 1718 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83123.t1 | F4INA9 | 59.8 | 924 | 330 | 8 | 6 | 919 | 81 | 973 | 9.1e-313 | 1073.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83123.t1 | G7I947 | 94.5 | 914 | 28 | 1 | 6 | 919 | 93 | 984 | 0.0e+00 | 1718.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049552 | MS.gene83123 | 0.809111 | 2.22E-50 | -1.69E-46 |
| MS.gene052413 | MS.gene83123 | 0.819536 | 1.10E-52 | -1.69E-46 |
| MS.gene053318 | MS.gene83123 | 0.864438 | 1.22E-64 | -1.69E-46 |
| MS.gene05601 | MS.gene83123 | 0.801047 | 1.08E-48 | -1.69E-46 |
| MS.gene056040 | MS.gene83123 | 0.810416 | 1.17E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene83123 | 0.813022 | 3.16E-51 | -1.69E-46 |
| MS.gene056346 | MS.gene83123 | 0.805205 | 1.49E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene83123 | 0.819413 | 1.18E-52 | -1.69E-46 |
| MS.gene059517 | MS.gene83123 | 0.829694 | 4.46E-55 | -1.69E-46 |
| MS.gene060187 | MS.gene83123 | -0.827868 | 1.23E-54 | -1.69E-46 |
| MS.gene060339 | MS.gene83123 | 0.812531 | 4.05E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83123.t1 | MTR_1g031140 | 94.530 | 914 | 28 | 1 | 6 | 919 | 93 | 984 | 0.0 | 1779 |
| MS.gene83123.t1 | MTR_3g079900 | 94.845 | 388 | 20 | 0 | 522 | 909 | 1 | 388 | 0.0 | 753 |
| MS.gene83123.t1 | MTR_3g079915 | 96.454 | 141 | 5 | 0 | 308 | 448 | 1 | 141 | 1.98e-90 | 284 |
| MS.gene83123.t1 | MTR_3g079925 | 66.467 | 167 | 34 | 1 | 6 | 172 | 32 | 176 | 1.09e-61 | 207 |
| MS.gene83123.t1 | MTR_3g079925 | 67.073 | 164 | 32 | 1 | 6 | 169 | 45 | 186 | 2.07e-61 | 207 |
| MS.gene83123.t1 | MTR_7g084560 | 33.902 | 410 | 223 | 8 | 464 | 864 | 267 | 637 | 4.35e-59 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83123.t1 | AT2G01440 | 60.195 | 922 | 330 | 9 | 6 | 919 | 81 | 973 | 0.0 | 1097 |
| MS.gene83123.t1 | AT3G02060 | 33.784 | 444 | 245 | 9 | 464 | 898 | 266 | 669 | 7.92e-62 | 225 |
| MS.gene83123.t1 | AT3G02060 | 33.784 | 444 | 245 | 9 | 464 | 898 | 266 | 669 | 7.92e-62 | 225 |
| MS.gene83123.t1 | AT3G02060 | 33.784 | 444 | 245 | 9 | 464 | 898 | 265 | 668 | 8.13e-62 | 225 |
Find 229 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTGTTTCAGAAATTATT+TGG | 0.134771 | 1.2:-16334115 | MS.gene83123:CDS |
| GGCCCCTGAGTTGGTGTAAT+TGG | 0.159367 | 1.2:+16323061 | None:intergenic |
| ACTTGTTCGCAATACTATTT+AGG | 0.171715 | 1.2:+16338253 | None:intergenic |
| TGCTCTGAAAGTTCGATAAT+TGG | 0.181246 | 1.2:+16323321 | None:intergenic |
| GTGATGTATGGAGGAATTTA+TGG | 0.188932 | 1.2:-16340308 | None:intergenic |
| CTTGCAGGTATTTGCTCTTA+TGG | 0.204641 | 1.2:-16340014 | MS.gene83123:intron |
| ACCCTTGCGCTTGCTTTATA+TGG | 0.228107 | 1.2:-16325850 | MS.gene83123:CDS |
| GCCACTCAAGTAATTGAAAT+TGG | 0.233843 | 1.2:-16323144 | MS.gene83123:CDS |
| GACATTGATTGAGGTGTTAA+AGG | 0.244357 | 1.2:+16339653 | None:intergenic |
| AATTCCTCTCTAATGTCTTT+AGG | 0.250188 | 1.2:+16335415 | None:intergenic |
| CATAACATCCCTGATCTAAT+TGG | 0.250534 | 1.2:-16339989 | MS.gene83123:CDS |
| AAATTATTTGGGATTTAAAA+AGG | 0.251974 | 1.2:-16334103 | MS.gene83123:CDS |
| CTTGCATGCATGGAAGTTAT+TGG | 0.252844 | 1.2:-16333526 | MS.gene83123:CDS |
| AAAGACATTAGAGAGGAATT+TGG | 0.258509 | 1.2:-16335412 | MS.gene83123:CDS |
| TAAATGTTGTTCAAAATCTT+TGG | 0.281915 | 1.2:+16339796 | None:intergenic |
| TCTCTAATGTCTTTAGGAAT+TGG | 0.285234 | 1.2:+16335421 | None:intergenic |
| TGGGTTTCATCTTGCTAATA+TGG | 0.287027 | 1.2:-16322944 | MS.gene83123:CDS |
| GCAATTTCCTGCACTTAAAC+TGG | 0.298836 | 1.2:-16322088 | MS.gene83123:CDS |
| CTCAAAGACTGATGATTATA+TGG | 0.304409 | 1.2:-16325914 | MS.gene83123:CDS |
| TCGACTTCCAATCTGGTAAT+AGG | 0.310055 | 1.2:+16322856 | None:intergenic |
| AAGAAACGTTAGGGAAGTTT+AGG | 0.311725 | 1.2:-16323191 | MS.gene83123:CDS |
| GTTATCTCAGACCGGTTTCC+AGG | 0.312908 | 1.2:-16323261 | MS.gene83123:CDS |
| TACCAAGACCTTCGAGCATT+TGG | 0.317152 | 1.2:+16334273 | None:intergenic |
| TAAATCTTCAATTTCGAGTC+TGG | 0.326921 | 1.2:-16325959 | MS.gene83123:CDS |
| TCCAATGAATCGGCTACTTC+AGG | 0.327507 | 1.2:-16334075 | MS.gene83123:intron |
| CTGTCTCACCAAGAAGGTTT+TGG | 0.334829 | 1.2:-16334174 | MS.gene83123:CDS |
| TTCTGAAACAAATATCATTT+CGG | 0.340676 | 1.2:-16339822 | MS.gene83123:CDS |
| GATATTTCCATCAATTACTT+TGG | 0.341300 | 1.2:-16339888 | MS.gene83123:CDS |
| GCTTGCATTGCTTGAAAACT+TGG | 0.341803 | 1.2:-16327537 | MS.gene83123:CDS |
| AGTTATTGGCTCTGGCTATC+AGG | 0.346529 | 1.2:-16333512 | MS.gene83123:intron |
| TTTGAAGGGTAGATACAATA+TGG | 0.347129 | 1.2:+16336578 | None:intergenic |
| AAGGACCTCCAAAACCTTCT+TGG | 0.361029 | 1.2:+16334166 | None:intergenic |
| ATCAAATATAAGTCTCTTGC+GGG | 0.371310 | 1.2:+16335006 | None:intergenic |
| TTGGAGAAGTCTTATCTTCA+AGG | 0.382863 | 1.2:-16339254 | MS.gene83123:intron |
| TAGCATATGATCGTGGAAAA+TGG | 0.383067 | 1.2:+16339328 | None:intergenic |
| GGTGAAGATGTTAAACTAGA+AGG | 0.386289 | 1.2:+16339704 | None:intergenic |
| CTTCCATTTCCAATTAGATC+AGG | 0.386903 | 1.2:+16339980 | None:intergenic |
| TGACCGGAAGTAAGAGTATA+GGG | 0.389140 | 1.2:+16334143 | None:intergenic |
| GGATATTAGTGAAGCTGATC+TGG | 0.391300 | 1.2:-16335029 | MS.gene83123:CDS |
| CGATTGAAATTTCTCCGGTC+TGG | 0.391448 | 1.2:+16327334 | None:intergenic |
| ATCCCTGATCTAATTGGAAA+TGG | 0.392081 | 1.2:-16339983 | MS.gene83123:CDS |
| TAACTATTAGGCGGCTTTCA+TGG | 0.392532 | 1.2:-16327600 | MS.gene83123:intron |
| GTTTGAACCCAACATTCCTT+CGG | 0.393103 | 1.2:-16336550 | MS.gene83123:CDS |
| AAAGCAAGCGCAAGGGTCCT+TGG | 0.393595 | 1.2:+16325856 | None:intergenic |
| CGAGTTTCCTATTACCAGAT+TGG | 0.393606 | 1.2:-16322863 | MS.gene83123:CDS |
| AGCTGTTTCAGAAATTATTT+GGG | 0.398821 | 1.2:-16334114 | MS.gene83123:CDS |
| GCCCCTGAGTTGGTGTAATT+GGG | 0.399144 | 1.2:+16323062 | None:intergenic |
| TCAGCTTCACTAATATCCTT+TGG | 0.401300 | 1.2:+16335034 | None:intergenic |
| CAAGCAAGTGTTTATAATGC+TGG | 0.403142 | 1.2:+16327555 | None:intergenic |
| GAGATAACTCATTAAGTGTA+AGG | 0.403540 | 1.2:+16339552 | None:intergenic |
| GGAGAAATTTCAATCGTCAT+TGG | 0.404798 | 1.2:-16327327 | MS.gene83123:CDS |
| CATATAATCATCAGTCTTTG+AGG | 0.409324 | 1.2:+16325915 | None:intergenic |
| GTTTGAACAGGAATCCTTCC+TGG | 0.409760 | 1.2:+16324170 | None:intergenic |
| CGCCAGGTCCACGTAATAAT+AGG | 0.412858 | 1.2:+16322920 | None:intergenic |
| ACCTGAAGTAGCCGATTCAT+TGG | 0.412932 | 1.2:+16334074 | None:intergenic |
| TTTGAACCCAACATTCCTTC+GGG | 0.416108 | 1.2:-16336549 | MS.gene83123:CDS |
| ATATAAAATTGTCACCTTGT+AGG | 0.418463 | 1.2:+16324109 | None:intergenic |
| CCTTCATCGTTTGAAAGTAC+TGG | 0.419728 | 1.2:-16322980 | MS.gene83123:CDS |
| ATCAATGTCTTCAATATATG+AGG | 0.420240 | 1.2:-16339639 | MS.gene83123:CDS |
| CCATCATACAAACCCACTTC+AGG | 0.421904 | 1.2:+16339857 | None:intergenic |
| CAGGAAATTGCTCCAGATCA+TGG | 0.427300 | 1.2:+16322100 | None:intergenic |
| CTTAAGTGCTTCCCATGATC+TGG | 0.430962 | 1.2:-16322112 | MS.gene83123:CDS |
| CGTTGCTTCTTAGTTAATCC+AGG | 0.431264 | 1.2:+16339506 | None:intergenic |
| ATATTTCCATCAATTACTTT+GGG | 0.431693 | 1.2:-16339887 | MS.gene83123:CDS |
| TTCCAAATGCTCGAAGGTCT+TGG | 0.432542 | 1.2:-16334275 | MS.gene83123:CDS |
| CATGCTCAATATCCGATTCC+CGG | 0.435529 | 1.2:+16338361 | None:intergenic |
| ACATCTGTCAATTGCTTACC+TGG | 0.436492 | 1.2:-16339524 | MS.gene83123:CDS |
| GGGCAGTATTTGATGTTTGT+TGG | 0.441166 | 1.2:-16339273 | MS.gene83123:CDS |
| TATTGTATCTACCCTTCAAA+AGG | 0.443035 | 1.2:-16336575 | MS.gene83123:CDS |
| TGATGGATGAGTTGGAAGAT+GGG | 0.443050 | 1.2:-16323365 | MS.gene83123:CDS |
| AATATTGACGTGCTTGAAGA+TGG | 0.443110 | 1.2:-16336632 | MS.gene83123:CDS |
| AGCATGTAACCGACAAAGTT+GGG | 0.443905 | 1.2:-16338344 | MS.gene83123:CDS |
| ACAACCATCATCGATGCATC+TGG | 0.444936 | 1.2:+16323111 | None:intergenic |
| ATCTCGTAGTGATCTTTAGT+AGG | 0.446993 | 1.2:+16336665 | None:intergenic |
| GCTCTGAAAGTTCGATAATT+GGG | 0.448698 | 1.2:+16323322 | None:intergenic |
| CGTGGACCTGGCGACTTGCT+TGG | 0.450019 | 1.2:-16322910 | MS.gene83123:CDS |
| AGACAGCCGCTTTGCCTGCT+AGG | 0.450136 | 1.2:-16322054 | MS.gene83123:CDS |
| CTTCCCTATACTCTTACTTC+CGG | 0.450519 | 1.2:-16334146 | MS.gene83123:CDS |
| TACAATTGTGGTTTATTACA+TGG | 0.458064 | 1.2:-16323237 | MS.gene83123:CDS |
| CCTGAAGTGGGTTTGTATGA+TGG | 0.458960 | 1.2:-16339857 | MS.gene83123:CDS |
| CACAATTGTATCCTGGAAAC+CGG | 0.460527 | 1.2:+16323250 | None:intergenic |
| TTGCTTGGCAAGAAACAATC+TGG | 0.461165 | 1.2:-16322895 | MS.gene83123:CDS |
| ATGATGGATGAGTTGGAAGA+TGG | 0.462197 | 1.2:-16323366 | MS.gene83123:CDS |
| GCACTACCCAAAGTAATTGA+TGG | 0.462197 | 1.2:+16339881 | None:intergenic |
| GTCCAACTCGGCCCCTGAGT+TGG | 0.463318 | 1.2:+16323052 | None:intergenic |
| CAAAACCTTCTTGGTGAGAC+AGG | 0.464022 | 1.2:+16334175 | None:intergenic |
| AAGAGGAAGATTTAACAGTA+AGG | 0.469294 | 1.2:-16327217 | MS.gene83123:intron |
| TTGACCGGAAGTAAGAGTAT+AGG | 0.470071 | 1.2:+16334142 | None:intergenic |
| TCGATGGTATATGTTTGAAC+AGG | 0.470456 | 1.2:+16324158 | None:intergenic |
| TGCATGGAAGTTATTGGCTC+TGG | 0.472938 | 1.2:-16333520 | MS.gene83123:CDS |
| TGATGTCCCGAAGGAATGTT+GGG | 0.475017 | 1.2:+16336543 | None:intergenic |
| ATTGCCGTCGACTTCCAATC+TGG | 0.478317 | 1.2:+16322849 | None:intergenic |
| AAATGAAATCTAAAATGAAT+CGG | 0.481089 | 1.2:-16339952 | MS.gene83123:CDS |
| ATTGTATCTACCCTTCAAAA+GGG | 0.481958 | 1.2:-16336574 | MS.gene83123:CDS |
| AAGCAAGCGCAAGGGTCCTT+GGG | 0.483118 | 1.2:+16325857 | None:intergenic |
| TGGCCTCTCTTTAGCGCAAA+GGG | 0.484083 | 1.2:+16336598 | None:intergenic |
| TCTTGGTACACAAGTAGAAA+AGG | 0.485150 | 1.2:-16334258 | MS.gene83123:CDS |
| CTGAAGTGGGTTTGTATGAT+GGG | 0.485329 | 1.2:-16339856 | MS.gene83123:CDS |
| AGCGCAAGGGTCCTTGGGAT+GGG | 0.485659 | 1.2:+16325862 | None:intergenic |
| CAATCTGGTAATAGGAAACT+CGG | 0.485660 | 1.2:+16322864 | None:intergenic |
| AAGCGCAAGGGTCCTTGGGA+TGG | 0.488030 | 1.2:+16325861 | None:intergenic |
| ACCAATTTCAATTACTTGAG+TGG | 0.489380 | 1.2:+16323143 | None:intergenic |
| TCCTTTGTCACTTCCCTCGA+TGG | 0.489814 | 1.2:+16324142 | None:intergenic |
| TTTGGGTAGTGCTCCTGAAG+TGG | 0.490514 | 1.2:-16339870 | MS.gene83123:CDS |
| GGAATTGGATCAACAATGAC+TGG | 0.492228 | 1.2:+16335436 | None:intergenic |
| CGCTGTCTGCAAACAAACTG+TGG | 0.492730 | 1.2:+16327301 | None:intergenic |
| AAAGGCCGGTTCCAATGAAT+CGG | 0.493622 | 1.2:-16334085 | MS.gene83123:CDS |
| TGAAACAGCTTGCAGTTGAC+CGG | 0.494944 | 1.2:+16334127 | None:intergenic |
| GGGAAGTGACAAAGGATTTG+AGG | 0.495742 | 1.2:-16324135 | MS.gene83123:CDS |
| AGTAGCCGATTCATTGGAAC+CGG | 0.496130 | 1.2:+16334080 | None:intergenic |
| TCATTACTTGAGGTGATTGT+TGG | 0.496922 | 1.2:-16338399 | MS.gene83123:CDS |
| TTTCATGGTTCCAACTGAGT+TGG | 0.497308 | 1.2:-16327585 | MS.gene83123:CDS |
| GTGATGAATTCTGAGAGGTT+TGG | 0.497651 | 1.2:-16323090 | MS.gene83123:CDS |
| TTGGGTAGTGCTCCTGAAGT+GGG | 0.500045 | 1.2:-16339869 | MS.gene83123:CDS |
| GAGCATGTAACCGACAAAGT+TGG | 0.500156 | 1.2:-16338345 | MS.gene83123:CDS |
| TATATTGAAGACATTGATTG+AGG | 0.503798 | 1.2:+16339644 | None:intergenic |
| GCACACGGGGACATTTATGA+TGG | 0.504771 | 1.2:-16339294 | MS.gene83123:CDS |
| TTGTTCAATTTCATTACTTG+AGG | 0.510057 | 1.2:-16338409 | MS.gene83123:CDS |
| TCAGATTGAAGACCGGGAAT+CGG | 0.510417 | 1.2:-16338373 | MS.gene83123:CDS |
| AGACGCACATGTTGCTGCAC+TGG | 0.511644 | 1.2:-16322818 | MS.gene83123:intron |
| TGACACTTTCAGGGTGATGT+TGG | 0.512220 | 1.2:-16333574 | MS.gene83123:intron |
| AATGACGATTGAAATTTCTC+CGG | 0.513924 | 1.2:+16327329 | None:intergenic |
| CCAGATGATGATGGATGAGT+TGG | 0.516635 | 1.2:-16323373 | MS.gene83123:intron |
| CACCAACTCAGGGGCCGAGT+TGG | 0.517789 | 1.2:-16323054 | MS.gene83123:CDS |
| CCTGCACTTAAACTGGAGCT+TGG | 0.519333 | 1.2:-16322081 | MS.gene83123:CDS |
| AATAAACCACAATTGTATCC+TGG | 0.525067 | 1.2:+16323243 | None:intergenic |
| GCCTTGTTCCGCGTCCAACT+CGG | 0.525727 | 1.2:+16323040 | None:intergenic |
| GGAAGATTCTCAAAAGAAAG+TGG | 0.525817 | 1.2:-16339594 | MS.gene83123:CDS |
| TGGCCCAATTACACCAACTC+AGG | 0.527566 | 1.2:-16323065 | MS.gene83123:CDS |
| CGCTTTGGTGTGATTCAAAG+AGG | 0.530319 | 1.2:-16327234 | MS.gene83123:CDS |
| TTGGTTGTCAGATTGAAGAC+CGG | 0.536375 | 1.2:-16338380 | MS.gene83123:CDS |
| AAAATTGGATCAAGTTACTA+GGG | 0.539797 | 1.2:-16339615 | MS.gene83123:CDS |
| ACAATTGTGGTTTATTACAT+GGG | 0.540012 | 1.2:-16323236 | MS.gene83123:CDS |
| TGGAAATATCCTACACATCA+AGG | 0.540440 | 1.2:+16339901 | None:intergenic |
| CAGATAACCGACTTACCACC+AGG | 0.541332 | 1.2:-16324188 | MS.gene83123:CDS |
| AGGAAATTGCTCCAGATCAT+GGG | 0.542959 | 1.2:+16322101 | None:intergenic |
| AGGATTTGAGGATGCCTACA+AGG | 0.545223 | 1.2:-16324123 | MS.gene83123:intron |
| GACTTGATCAATCACCTAGC+AGG | 0.546791 | 1.2:+16322040 | None:intergenic |
| TTCCATTTCCAATTAGATCA+GGG | 0.547110 | 1.2:+16339981 | None:intergenic |
| GTGGATGAGCAGCATCGCTT+TGG | 0.547311 | 1.2:-16327249 | MS.gene83123:CDS |
| TTTCAGGGTGATGTTGGATG+TGG | 0.549338 | 1.2:-16333568 | MS.gene83123:intron |
| ATCTCAAAGTTATCTCAGAC+CGG | 0.549467 | 1.2:-16323269 | MS.gene83123:CDS |
| CGGTTTCCAGGATACAATTG+TGG | 0.550814 | 1.2:-16323249 | MS.gene83123:CDS |
| GAAGATTCTCAAAAGAAAGT+GGG | 0.551057 | 1.2:-16339593 | MS.gene83123:CDS |
| CACCATATAAAGCAAGCGCA+AGG | 0.551892 | 1.2:+16325848 | None:intergenic |
| CTCAGGGGCCGAGTTGGACG+CGG | 0.553537 | 1.2:-16323048 | MS.gene83123:CDS |
| TGGTTGTCAGATTGAAGACC+GGG | 0.553730 | 1.2:-16338379 | MS.gene83123:CDS |
| ATGATGTCCCGAAGGAATGT+TGG | 0.554639 | 1.2:+16336542 | None:intergenic |
| CCAAGCTCCAGTTTAAGTGC+AGG | 0.555098 | 1.2:+16322081 | None:intergenic |
| ATGTTGCAGGGTATCCAGAC+CGG | 0.555872 | 1.2:-16327348 | MS.gene83123:intron |
| CTCAGCCTTACGTATTGCTG+TGG | 0.556450 | 1.2:-16327271 | MS.gene83123:CDS |
| TGTTCCAGATGCATCGATGA+TGG | 0.557877 | 1.2:-16323115 | MS.gene83123:CDS |
| CATCAAATATAAGTCTCTTG+CGG | 0.558668 | 1.2:+16335005 | None:intergenic |
| ACGTTAGGGAAGTTTAGGAC+TGG | 0.563325 | 1.2:-16323186 | MS.gene83123:CDS |
| CCAGTACTTTCAAACGATGA+AGG | 0.564004 | 1.2:+16322980 | None:intergenic |
| TTCTTGCCAAGCAAGTCGCC+AGG | 0.565276 | 1.2:+16322904 | None:intergenic |
| GCCGAGTTGGACGCGGAACA+AGG | 0.565761 | 1.2:-16323041 | MS.gene83123:CDS |
| GGTACACAAGTAGAAAAGGA+TGG | 0.572043 | 1.2:-16334254 | MS.gene83123:CDS |
| GATGGATGAGTTGGAAGATG+GGG | 0.572787 | 1.2:-16323364 | MS.gene83123:CDS |
| TGTATCTACCCTTCAAAAGG+GGG | 0.574846 | 1.2:-16336572 | MS.gene83123:CDS |
| CCAACTGTCGCTCTACTCAC+TGG | 0.577014 | 1.2:-16327497 | MS.gene83123:CDS |
| TATCCCTTTGCGCTAAAGAG+AGG | 0.577247 | 1.2:-16336601 | MS.gene83123:CDS |
| ATGGCCTCTCTTTAGCGCAA+AGG | 0.577278 | 1.2:+16336597 | None:intergenic |
| ACACTTTGTGTACAAAGGAA+TGG | 0.577675 | 1.2:-16334199 | MS.gene83123:CDS |
| ACGACATCTCCTTGATGTGT+AGG | 0.579277 | 1.2:-16339910 | MS.gene83123:CDS |
| AGCCTTACGTATTGCTGTGG+TGG | 0.579907 | 1.2:-16327268 | MS.gene83123:CDS |
| TACTGGAGCAATCATCAGAT+GGG | 0.589389 | 1.2:-16322963 | MS.gene83123:CDS |
| CATAGCATGTGTGAGTGGTA+AGG | 0.591020 | 1.2:-16338217 | MS.gene83123:intron |
| TGGATCAACAATGACTGGCA+AGG | 0.594831 | 1.2:+16335441 | None:intergenic |
| ATCTTCAATTTCGAGTCTGG+AGG | 0.595795 | 1.2:-16325956 | MS.gene83123:CDS |
| GCAGACATGGCAAGAACATG+TGG | 0.598690 | 1.2:+16325889 | None:intergenic |
| ATGGTCCTGTCTCACCAAGA+AGG | 0.599941 | 1.2:-16334180 | MS.gene83123:CDS |
| TCCTTCGGGACATCATTGCA+AGG | 0.600821 | 1.2:-16336535 | MS.gene83123:intron |
| GATTGAGGTGTTAAAGGACA+AGG | 0.601011 | 1.2:+16339659 | None:intergenic |
| GAAGGATTGACATACAAAGA+AGG | 0.601579 | 1.2:+16339722 | None:intergenic |
| TTGTATCTACCCTTCAAAAG+GGG | 0.603929 | 1.2:-16336573 | MS.gene83123:CDS |
| GGCCCAATTACACCAACTCA+GGG | 0.604595 | 1.2:-16323064 | MS.gene83123:CDS |
| GTACACAAGTAGAAAAGGAT+GGG | 0.605428 | 1.2:-16334253 | MS.gene83123:CDS |
| GTACTGGAGCAATCATCAGA+TGG | 0.606977 | 1.2:-16322964 | MS.gene83123:CDS |
| TAAAAGTAAAACGTGTGCCA+CGG | 0.607986 | 1.2:+16338283 | None:intergenic |
| ACCATATAAAGCAAGCGCAA+GGG | 0.608898 | 1.2:+16325849 | None:intergenic |
| ACAAGCGCGGATTATTCGCA+AGG | 0.610496 | 1.2:-16327459 | MS.gene83123:intron |
| GTTCAAACATATACCATCGA+GGG | 0.613078 | 1.2:-16324155 | MS.gene83123:CDS |
| ACCATCGAGGGAAGTGACAA+AGG | 0.613822 | 1.2:-16324143 | MS.gene83123:CDS |
| ATCCACCACAGCAATACGTA+AGG | 0.614437 | 1.2:+16327266 | None:intergenic |
| TGGATTGCAACCAACTCAGT+TGG | 0.614757 | 1.2:+16327575 | None:intergenic |
| AATCTGGTAATAGGAAACTC+GGG | 0.616903 | 1.2:+16322865 | None:intergenic |
| AATCCTTCCTGGTGGTAAGT+CGG | 0.617389 | 1.2:+16324181 | None:intergenic |
| ATTGCTTGAAAACTTGGACG+AGG | 0.618005 | 1.2:-16327531 | MS.gene83123:CDS |
| ATGGATGAGTTGGAAGATGG+GGG | 0.618804 | 1.2:-16323363 | MS.gene83123:CDS |
| GACCTATTATTACGTGGACC+TGG | 0.622422 | 1.2:-16322922 | MS.gene83123:CDS |
| GCTGTCTGCAAACAAACTGT+GGG | 0.622441 | 1.2:+16327302 | None:intergenic |
| CGATTCTTCAGAGGTAAGAG+AGG | 0.624675 | 1.2:-16339771 | MS.gene83123:CDS |
| TGGGATGGGAGTAGCAGACA+TGG | 0.625483 | 1.2:+16325876 | None:intergenic |
| AAATAACACTTTGTGTACAA+AGG | 0.626230 | 1.2:-16334204 | MS.gene83123:CDS |
| TTCAGGGTGATGTTGGATGT+GGG | 0.626703 | 1.2:-16333567 | MS.gene83123:intron |
| ACCTTGCAATGATGTCCCGA+AGG | 0.628557 | 1.2:+16336534 | None:intergenic |
| TGGTGATATGTCACTGACAC+AGG | 0.629735 | 1.2:-16325830 | MS.gene83123:intron |
| GAATTCTGAGAGGTTTGGAA+TGG | 0.632033 | 1.2:-16323085 | MS.gene83123:CDS |
| TTTCAAACGATGAAGGCCAC+TGG | 0.635677 | 1.2:+16322987 | None:intergenic |
| ACATTTATACGATTCTTCAG+AGG | 0.636619 | 1.2:-16339780 | MS.gene83123:CDS |
| CCAGTGAGTAGAGCGACAGT+TGG | 0.636762 | 1.2:+16327497 | None:intergenic |
| CTAATCTACAGAATGCACAC+GGG | 0.637931 | 1.2:-16339308 | MS.gene83123:CDS |
| GCAGAAGCAGCACGAAGCTG+AGG | 0.639554 | 1.2:+16323294 | None:intergenic |
| ATTACCAGATTGGAAGTCGA+CGG | 0.641804 | 1.2:-16322853 | MS.gene83123:CDS |
| CGGAAGTAAGAGTATAGGGA+AGG | 0.642955 | 1.2:+16334147 | None:intergenic |
| CACACGGGGACATTTATGAT+GGG | 0.644132 | 1.2:-16339293 | MS.gene83123:CDS |
| ATTTGTTTCAGAATATGTTG+TGG | 0.648943 | 1.2:+16339832 | None:intergenic |
| CAATTATTCCAAATGCTCGA+AGG | 0.649656 | 1.2:-16334281 | MS.gene83123:CDS |
| AGATAACTGTGGGTTTCACA+CGG | 0.649674 | 1.2:-16339474 | MS.gene83123:intron |
| TTAATATCATCAACTGCCAG+TGG | 0.651291 | 1.2:-16323003 | MS.gene83123:CDS |
| GTGAGCAACTAGATAACTGT+GGG | 0.657830 | 1.2:-16339484 | MS.gene83123:CDS |
| AGAAGGTGATGCTTCAGAGA+CGG | 0.667800 | 1.2:+16339739 | None:intergenic |
| TGTCTGCTACTCCCATCCCA+AGG | 0.667833 | 1.2:-16325873 | MS.gene83123:CDS |
| GCTAATCTACAGAATGCACA+CGG | 0.668201 | 1.2:-16339309 | MS.gene83123:CDS |
| CGTGAGCAACTAGATAACTG+TGG | 0.671660 | 1.2:-16339485 | MS.gene83123:CDS |
| AAGATTCTCAAAAGAAAGTG+GGG | 0.672414 | 1.2:-16339592 | MS.gene83123:CDS |
| TAACCGACTTACCACCAGGA+AGG | 0.674759 | 1.2:-16324184 | MS.gene83123:CDS |
| AATATGGACCTATTATTACG+TGG | 0.675630 | 1.2:-16322928 | MS.gene83123:CDS |
| TGTAGATTAGCATATGATCG+TGG | 0.678884 | 1.2:+16339321 | None:intergenic |
| AATTCCTAAAGACATTAGAG+AGG | 0.682353 | 1.2:-16335419 | MS.gene83123:CDS |
| AGAGACATAGCATGTGTGAG+TGG | 0.690882 | 1.2:-16338222 | MS.gene83123:CDS |
| CAATCACCTAGCAGGCAAAG+CGG | 0.695432 | 1.2:+16322048 | None:intergenic |
| TGAACAGGAATCCTTCCTGG+TGG | 0.697461 | 1.2:+16324173 | None:intergenic |
| CAACCCCACTAAAACAAGCG+CGG | 0.702736 | 1.2:-16327472 | MS.gene83123:CDS |
| TGTTCAAACATATACCATCG+AGG | 0.717968 | 1.2:-16324156 | MS.gene83123:CDS |
| TAATCTACAGAATGCACACG+GGG | 0.721253 | 1.2:-16339307 | MS.gene83123:CDS |
| TGGTTGTGATGAATTCTGAG+AGG | 0.736566 | 1.2:-16323095 | MS.gene83123:CDS |
| GCCCAATTACACCAACTCAG+GGG | 0.737840 | 1.2:-16323063 | MS.gene83123:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 16322047 | 16340323 | 16322047 | ID=MS.gene83123 |
| chr1.2 | mRNA | 16322047 | 16340323 | 16322047 | ID=MS.gene83123.t1;Parent=MS.gene83123 |
| chr1.2 | exon | 16340309 | 16340323 | 16340309 | ID=MS.gene83123.t1.exon1;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16340309 | 16340323 | 16340309 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16339475 | 16340029 | 16339475 | ID=MS.gene83123.t1.exon2;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16339475 | 16340029 | 16339475 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16339255 | 16339367 | 16339255 | ID=MS.gene83123.t1.exon3;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16339255 | 16339367 | 16339255 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16338218 | 16338446 | 16338218 | ID=MS.gene83123.t1.exon4;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16338218 | 16338446 | 16338218 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16336536 | 16336699 | 16336536 | ID=MS.gene83123.t1.exon5;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16336536 | 16336699 | 16336536 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16335393 | 16335474 | 16335393 | ID=MS.gene83123.t1.exon6;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16335393 | 16335474 | 16335393 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16334988 | 16335077 | 16334988 | ID=MS.gene83123.t1.exon7;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16334988 | 16335077 | 16334988 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16334076 | 16334309 | 16334076 | ID=MS.gene83123.t1.exon8;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16334076 | 16334309 | 16334076 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16333513 | 16333584 | 16333513 | ID=MS.gene83123.t1.exon9;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16333513 | 16333584 | 16333513 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16327460 | 16327612 | 16327460 | ID=MS.gene83123.t1.exon10;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16327460 | 16327612 | 16327460 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16327218 | 16327361 | 16327218 | ID=MS.gene83123.t1.exon11;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16327218 | 16327361 | 16327218 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16325831 | 16325989 | 16325831 | ID=MS.gene83123.t1.exon12;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16325831 | 16325989 | 16325831 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16324124 | 16324207 | 16324124 | ID=MS.gene83123.t1.exon13;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16324124 | 16324207 | 16324124 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16322819 | 16323391 | 16322819 | ID=MS.gene83123.t1.exon14;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16322819 | 16323391 | 16322819 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| chr1.2 | exon | 16322047 | 16322139 | 16322047 | ID=MS.gene83123.t1.exon15;Parent=MS.gene83123.t1 |
| chr1.2 | CDS | 16322047 | 16322139 | 16322047 | ID=cds.MS.gene83123.t1;Parent=MS.gene83123.t1 |
| Gene Sequence |
| Protein sequence |
