AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83190.t1 MTR_6g015830 93.952 463 27 1 1 462 1 463 0.0 895
MS.gene83190.t1 MTR_6g015850 90.043 462 44 1 1 462 1 460 0.0 854
MS.gene83190.t1 MTR_6g015815 77.322 463 104 1 1 462 1 463 0.0 740
MS.gene83190.t1 MTR_6g015315 57.541 431 172 7 38 462 30 455 2.36e-168 481
MS.gene83190.t1 MTR_6g015320 53.518 469 199 8 1 462 1 457 2.01e-163 469
MS.gene83190.t1 MTR_7g014250 45.923 466 229 10 9 461 3 458 3.28e-139 407
MS.gene83190.t1 MTR_7g014230 46.253 467 228 10 9 462 5 461 3.82e-139 407
MS.gene83190.t1 MTR_7g014330 45.494 466 231 10 9 461 3 458 2.03e-138 405
MS.gene83190.t1 MTR_7g014200 41.319 455 230 13 30 459 26 468 5.02e-103 315
MS.gene83190.t1 MTR_7g014360 43.077 390 191 9 80 461 22 388 5.19e-99 302
MS.gene83190.t1 MTR_7g014160 38.496 452 252 10 30 459 26 473 8.07e-98 302
MS.gene83190.t1 MTR_6g015310 46.779 357 139 7 84 437 25 333 6.40e-97 295
MS.gene83190.t1 MTR_7g014610 39.912 456 243 14 30 459 25 475 2.45e-95 296
MS.gene83190.t1 MTR_7g013850 38.901 455 244 12 35 459 30 480 1.25e-91 286
MS.gene83190.t1 MTR_2g089765 35.234 491 271 15 4 462 10 485 1.11e-80 258
MS.gene83190.t1 MTR_7g014620 36.281 441 251 9 30 459 11 432 1.57e-78 251
MS.gene83190.t1 MTR_3g028210 33.264 478 276 14 9 462 9 467 6.76e-77 248
MS.gene83190.t1 MTR_2g089670 34.812 451 265 10 30 462 41 480 5.82e-73 238
MS.gene83190.t1 MTR_8g012750 34.764 466 263 10 28 462 20 475 9.14e-71 232
MS.gene83190.t1 MTR_2g089735 35.000 440 248 13 47 462 39 464 4.64e-67 222
MS.gene83190.t1 MTR_2g089755 33.624 458 259 14 34 462 37 478 9.23e-67 221
MS.gene83190.t1 MTR_2g089650 33.404 470 259 16 25 462 19 466 2.64e-66 220
MS.gene83190.t1 MTR_3g087640 34.979 466 255 13 27 460 24 473 1.18e-64 216
MS.gene83190.t1 MTR_7g015860 32.075 477 276 11 5 455 2 456 1.81e-63 213
MS.gene83190.t1 MTR_7g014310 37.500 328 148 8 117 440 30 304 1.05e-60 201
MS.gene83190.t1 MTR_7g014630 39.179 268 147 9 16 271 11 274 1.60e-50 176
MS.gene83190.t1 MTR_7g014180 51.656 151 69 2 30 176 24 174 1.59e-44 154
MS.gene83190.t1 MTR_7g014670 38.674 181 106 3 284 459 79 259 1.62e-34 130
MS.gene83190.t1 MTR_3g435300 34.470 264 149 6 30 280 20 272 6.03e-33 126
MS.gene83190.t1 MTR_2g089665 41.477 176 91 4 9 175 3 175 4.22e-29 117
MS.gene83190.t1 MTR_8g075610 27.488 422 254 17 50 454 30 416 1.47e-27 114
MS.gene83190.t1 MTR_7g014205 43.511 131 59 3 300 427 2 120 6.30e-26 102
MS.gene83190.t1 MTR_2g064495 25.721 416 274 11 50 455 39 429 2.17e-23 102
MS.gene83190.t1 MTR_7g014210 44.828 116 59 3 318 429 24 138 2.21e-23 96.7
MS.gene83190.t1 MTR_2g105330 25.481 416 275 11 50 455 39 429 1.65e-22 99.8
MS.gene83190.t1 MTR_4g094842 24.814 403 259 11 67 450 59 436 8.21e-21 95.1
MS.gene83190.t1 MTR_7g014340 55.556 72 30 1 9 80 3 72 1.21e-20 87.0
MS.gene83190.t1 MTR_3g088420 23.702 443 285 14 25 450 15 421 2.02e-19 90.5
MS.gene83190.t1 MTR_4g015180 23.385 449 269 14 55 448 45 473 3.16e-19 90.5
MS.gene83190.t1 MTR_5g081960 23.965 459 242 18 63 451 54 475 7.39e-19 89.4
MS.gene83190.t1 MTR_3g435290 38.525 122 67 4 344 462 4 120 9.33e-19 82.4
MS.gene83190.t1 MTR_8g041770 24.270 445 283 17 31 462 27 430 3.46e-18 87.0
MS.gene83190.t1 MTR_8g096530 25.515 388 261 10 70 452 59 423 6.55e-17 83.2
MS.gene83190.t1 MTR_6g045553 24.944 449 281 18 34 448 35 461 7.20e-17 83.2
MS.gene83190.t1 MTR_4g022800 24.183 459 281 16 21 450 10 430 1.10e-16 82.4
MS.gene83190.t1 MTR_3g070170 24.641 418 259 18 65 448 61 456 1.98e-16 81.6
MS.gene83190.t1 MTR_7g026860 25.607 453 267 16 27 451 17 427 3.36e-16 80.9
MS.gene83190.t1 MTR_4g094835 23.557 433 273 15 46 451 34 435 4.73e-16 80.5
MS.gene83190.t1 MTR_7g084940 24.691 405 253 16 70 455 69 440 5.52e-16 80.5
MS.gene83190.t1 MTR_7g085990 24.439 446 265 17 57 462 47 460 9.40e-16 79.7
MS.gene83190.t1 MTR_0190s0020 25.432 405 247 15 67 450 60 430 1.10e-15 79.3
MS.gene83190.t1 MTR_3g026950 23.364 428 264 14 64 455 48 447 1.21e-15 79.3
MS.gene83190.t1 MTR_4g022720 23.953 430 272 15 46 451 26 424 1.42e-15 79.0
MS.gene83190.t1 MTR_7g014220 64.151 53 19 0 28 80 12 64 1.88e-15 71.6
MS.gene83190.t1 MTR_7g085930 24.550 444 267 17 57 462 51 464 1.92e-15 79.0
MS.gene83190.t1 MTR_4g094828 23.261 417 254 14 27 414 22 401 6.13e-15 77.0
MS.gene83190.t1 MTR_3g049150 24.255 470 293 17 22 459 9 447 2.50e-14 75.1
MS.gene83190.t1 MTR_4g022670 24.940 417 259 15 21 414 10 395 3.76e-14 74.7
MS.gene83190.t1 MTR_4g127650 21.444 457 301 15 32 459 29 456 3.68e-13 71.6
MS.gene83190.t1 MTR_7g084910 24.581 358 208 15 70 412 70 380 4.48e-13 71.2
MS.gene83190.t1 MTR_3g026310 22.757 457 296 17 21 450 10 436 1.24e-12 70.1
MS.gene83190.t1 MTR_3g102010 23.415 410 280 15 58 453 53 442 2.88e-12 68.9
MS.gene83190.t1 MTR_2g089745 45.714 70 38 0 393 462 11 80 3.20e-12 62.8
MS.gene83190.t1 MTR_8g467580 26.698 427 229 24 20 411 8 385 1.09e-11 67.0
MS.gene83190.t1 MTR_3g101960 23.060 464 309 14 7 451 5 439 3.09e-11 65.5
MS.gene83190.t1 MTR_3g098980 23.210 405 256 16 70 456 66 433 4.28e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83190.t1 AT3G29635 37.124 466 273 10 7 462 2 457 3.77e-94 292
MS.gene83190.t1 AT5G39090 37.642 441 255 12 27 460 21 448 2.58e-87 274
MS.gene83190.t1 AT3G29670 37.241 435 258 10 32 461 27 451 4.81e-85 268
MS.gene83190.t1 AT5G39080 35.332 467 271 15 7 455 4 457 1.08e-83 265
MS.gene83190.t1 AT5G39050 36.345 476 273 16 3 460 5 468 1.45e-80 257
MS.gene83190.t1 AT3G29680 36.161 448 251 13 29 460 20 448 3.60e-80 256
MS.gene83190.t1 AT3G29590 33.817 482 264 13 1 460 1 449 1.89e-78 251
MS.gene83190.t1 AT5G61160 32.484 471 278 13 7 459 2 450 3.61e-78 251
MS.gene83190.t1 AT1G03940 31.622 487 284 15 1 460 1 465 2.38e-64 215
MS.gene83190.t1 AT1G03495 31.844 358 198 13 1 335 1 335 9.75e-39 144
MS.gene83190.t1 AT3G29720 35.122 205 113 9 107 303 26 218 2.22e-23 98.6
MS.gene83190.t1 AT5G07850 25.591 465 297 15 9 453 9 444 6.88e-20 92.4
MS.gene83190.t1 AT2G39980 25.000 424 274 14 65 453 57 471 1.46e-19 91.7
MS.gene83190.t1 AT5G48930 25.000 420 277 16 50 457 39 432 1.41e-18 88.2
MS.gene83190.t1 AT5G67150 25.459 436 282 14 34 453 29 437 4.29e-18 86.7
MS.gene83190.t1 AT5G42830 24.096 415 258 15 64 453 58 440 8.57e-18 85.9
MS.gene83190.t1 AT3G29690 33.121 157 94 4 309 461 31 180 1.48e-17 80.9
MS.gene83190.t1 AT2G19070 23.356 441 284 15 47 459 37 451 1.03e-14 76.6
MS.gene83190.t1 AT3G50270 24.396 455 272 18 27 455 22 430 1.65e-14 75.9
MS.gene83190.t1 AT5G57840 23.158 475 301 19 9 459 4 438 2.29e-14 75.5
MS.gene83190.t1 AT3G26040 26.407 462 257 19 21 451 9 418 2.45e-14 75.1
MS.gene83190.t1 AT5G67160 23.131 428 261 15 5 411 2 382 4.02e-11 65.1

Find 56 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAACTTTGAAACTTTAAA+TGG 0.189685 6.3:-10597946 None:intergenic
AAGATCTTTGAAACTTTCTT+TGG 0.225581 6.3:-10596905 None:intergenic
TCGATTTCTACTATGTATAT+TGG 0.237479 6.3:+10597534 MS.gene83190:CDS
TGTTAAATGGAGCTGAAAAT+TGG 0.251450 6.3:+10597676 MS.gene83190:CDS
TAATTCCAATTCCATTATTA+TGG 0.255026 6.3:-10597209 None:intergenic
ATTCAAGTCCTTGAACAAAA+AGG 0.268365 6.3:-10597923 None:intergenic
GGATTTGTAAATGCTTTAGA+AGG 0.320887 6.3:+10597615 MS.gene83190:CDS
AGTTACAAGTGCTTATGTTT+TGG 0.325752 6.3:+10597428 MS.gene83190:CDS
GAAAGTGAGTGTTTAAGATT+TGG 0.326553 6.3:-10596766 None:intergenic
CAAGACCATAATAATGGAAT+TGG 0.332443 6.3:+10597204 MS.gene83190:CDS
TATATTGGAAATTGTATTGC+AGG 0.334002 6.3:+10597549 MS.gene83190:CDS
AAAGATGTTGGAGTGTTAAA+TGG 0.336474 6.3:+10597663 MS.gene83190:CDS
GGTAAAATTTACTCTATTGC+TGG 0.339239 6.3:+10597726 MS.gene83190:CDS
CAATACTTTCTCCCTCTTGC+TGG 0.346664 6.3:+10596799 MS.gene83190:CDS
TATGGATTGTAGATCAAGAT+TGG 0.348320 6.3:+10597506 MS.gene83190:CDS
TTGATACAAGACCATAATAA+TGG 0.367593 6.3:+10597198 MS.gene83190:CDS
CCCTTGACATAGTTTATGAT+TGG 0.367882 6.3:-10596853 None:intergenic
AACAATGGTGGAATTGAGAT+TGG 0.373662 6.3:+10597861 MS.gene83190:CDS
AGTGAAGTTGGTGATGAAAA+AGG 0.373809 6.3:-10596637 None:intergenic
TTAACTACATCATGTTTCAT+TGG 0.375298 6.3:-10597309 None:intergenic
ACACACCATGCTGCTTTAGA+TGG 0.377821 6.3:+10597060 MS.gene83190:CDS
GTTAAATGGAGCTGAAAATT+GGG 0.387315 6.3:+10597677 MS.gene83190:CDS
TTTGAAAATTTCTCATGAAA+AGG 0.401565 6.3:+10596975 MS.gene83190:CDS
CTCTTGCTGGTAACATAACT+TGG 0.407662 6.3:+10596812 MS.gene83190:CDS
GACATAGTTTATGATTGGTT+TGG 0.421691 6.3:-10596848 None:intergenic
TGGGTTTCTAATATGTATAG+TGG 0.431498 6.3:+10597696 MS.gene83190:CDS
GATTGGTTTGGCTTTAAGTA+AGG 0.439820 6.3:+10597878 MS.gene83190:CDS
ATGACTTCAACTGATAAAAC+AGG 0.450314 6.3:+10597810 MS.gene83190:CDS
GTACTATAAAACTCAAACCT+TGG 0.458161 6.3:-10597753 None:intergenic
TTGAATAGTGTGAAAGATGT+TGG 0.459417 6.3:+10597651 MS.gene83190:CDS
AATATGTATAGTGGAATTGA+AGG 0.478268 6.3:+10597705 MS.gene83190:CDS
TAGAAGAAGAGAAGTTCAAC+TGG 0.490649 6.3:-10596700 None:intergenic
AAAGTGAGTGGAAGTGAAGT+TGG 0.513468 6.3:-10596649 None:intergenic
TTTGAGACAAAGAACTTGGT+TGG 0.518680 6.3:+10597585 MS.gene83190:CDS
TGGTGGAATTGAGATTGGTT+TGG 0.519435 6.3:+10597866 MS.gene83190:CDS
ACCAATCATAAACTATGTCA+AGG 0.533719 6.3:+10596852 MS.gene83190:CDS
AGCAAAAGCAGAACAACCTA+AGG 0.533952 6.3:+10597458 MS.gene83190:CDS
GATTTGTAAATGCTTTAGAA+GGG 0.534694 6.3:+10597616 MS.gene83190:CDS
TGATTCTTCATGTTGTGCCA+TGG 0.547919 6.3:-10596563 None:intergenic
GTTACTTTGTTTCCAAACAA+TGG 0.552487 6.3:+10597018 MS.gene83190:CDS
GAAAGTAGGAATAACAATGG+TGG 0.573498 6.3:+10597849 MS.gene83190:CDS
GGCTTTAAGTAAGGAAGACA+TGG 0.574320 6.3:+10597887 MS.gene83190:CDS
ATTCAAAAGCTTAAAGAACA+TGG 0.580692 6.3:+10597360 MS.gene83190:CDS
TGTGTTTGAGACAAAGAACT+TGG 0.581075 6.3:+10597581 MS.gene83190:CDS
AAAAGATCAAAGAAAGTGAG+TGG 0.584138 6.3:-10596661 None:intergenic
CAAGTTATGTTACCAGCAAG+AGG 0.592702 6.3:-10596811 None:intergenic
ACTCTATTGCTGGATCTCCA+AGG 0.593370 6.3:+10597736 MS.gene83190:CDS
CCAATCATAAACTATGTCAA+GGG 0.603092 6.3:+10596853 MS.gene83190:CDS
GTTGTTGATTTGTTGAAACA+TGG 0.605909 6.3:+10597243 MS.gene83190:CDS
TATACATAGTAGAAATCGAA+GGG 0.614271 6.3:-10597530 None:intergenic
AAGAAGAGAAGTTCAACTGG+TGG 0.614324 6.3:-10596697 None:intergenic
AGAATTAGAACATGCAACAC+AGG 0.622767 6.3:-10597115 None:intergenic
GGTGAAAGTAGGAATAACAA+TGG 0.647980 6.3:+10597846 MS.gene83190:CDS
GTTGATTTGTTGAAACATGG+TGG 0.651372 6.3:+10597246 MS.gene83190:CDS
AAGTTATGTTACCAGCAAGA+GGG 0.663928 6.3:-10596810 None:intergenic
ATATACATAGTAGAAATCGA+AGG 0.672339 6.3:-10597531 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAATATGAAAATGA+AGG + chr6.3:10597383-10597402 MS.gene83190:CDS 10.0%
!! ATCAATGATCTATCAAAAAA+AGG - chr6.3:10597183-10597202 None:intergenic 20.0%
!! ATGATAAAAAAGATGAATCA+AGG - chr6.3:10597143-10597162 None:intergenic 20.0%
!! TAATTCCAATTCCATTATTA+TGG - chr6.3:10597212-10597231 None:intergenic 20.0%
!! TTTGAAAATTTCTCATGAAA+AGG + chr6.3:10596975-10596994 MS.gene83190:CDS 20.0%
!!! TAAGTACTTTTATGAAATCA+TGG + chr6.3:10597091-10597110 MS.gene83190:CDS 20.0%
!!! TTAAGCTTTTGAATATTTGA+AGG - chr6.3:10597354-10597373 None:intergenic 20.0%
! ATATACATAGTAGAAATCGA+AGG - chr6.3:10597534-10597553 None:intergenic 25.0%
! ATTCAAAAGCTTAAAGAACA+TGG + chr6.3:10597360-10597379 MS.gene83190:CDS 25.0%
! CAGAAAAATTCATAATCTTG+AGG - chr6.3:10597287-10597306 None:intergenic 25.0%
! TATACATAGTAGAAATCGAA+GGG - chr6.3:10597533-10597552 None:intergenic 25.0%
! TATATTGGAAATTGTATTGC+AGG + chr6.3:10597549-10597568 MS.gene83190:CDS 25.0%
! TCGATTTCTACTATGTATAT+TGG + chr6.3:10597534-10597553 MS.gene83190:CDS 25.0%
! TTAACTACATCATGTTTCAT+TGG - chr6.3:10597312-10597331 None:intergenic 25.0%
! TTGATACAAGACCATAATAA+TGG + chr6.3:10597198-10597217 MS.gene83190:CDS 25.0%
!! AATATGTATAGTGGAATTGA+AGG + chr6.3:10597705-10597724 MS.gene83190:CDS 25.0%
!! AGTGGTTTTCATAATTTCTA+TGG + chr6.3:10597488-10597507 MS.gene83190:CDS 25.0%
!! CTCAAGATTATGAATTTTTC+TGG + chr6.3:10597285-10597304 MS.gene83190:CDS 25.0%
!! TCACTTTCTTTGATCTTTTA+TGG + chr6.3:10596665-10596684 MS.gene83190:CDS 25.0%
!! TCATGAGAAATTTTCAAATG+TGG - chr6.3:10596973-10596992 None:intergenic 25.0%
!!! AAAAAAGGTGTTAGATTTTC+AGG - chr6.3:10597168-10597187 None:intergenic 25.0%
!!! AAGATCTTTGAAACTTTCTT+TGG - chr6.3:10596908-10596927 None:intergenic 25.0%
!!! GAAGTCATATCAACTTTTTT+TGG - chr6.3:10597798-10597817 None:intergenic 25.0%
!!! GAGTTTTATAGTACTGATTT+TGG + chr6.3:10597762-10597781 MS.gene83190:CDS 25.0%
!!! GATTTGTAAATGCTTTAGAA+GGG + chr6.3:10597616-10597635 MS.gene83190:CDS 25.0%
!!! TATAGTACTGATTTTGGATT+TGG + chr6.3:10597768-10597787 MS.gene83190:CDS 25.0%
AAAAGATCAAAGAAAGTGAG+TGG - chr6.3:10596664-10596683 None:intergenic 30.0%
AAGAACTTGGTTGGAAAAAA+TGG + chr6.3:10597594-10597613 MS.gene83190:CDS 30.0%
ACCAATCATAAACTATGTCA+AGG + chr6.3:10596852-10596871 MS.gene83190:CDS 30.0%
ATGACTTCAACTGATAAAAC+AGG + chr6.3:10597810-10597829 MS.gene83190:CDS 30.0%
ATTCAAGTCCTTGAACAAAA+AGG - chr6.3:10597926-10597945 None:intergenic 30.0%
CCAATCATAAACTATGTCAA+GGG + chr6.3:10596853-10596872 MS.gene83190:CDS 30.0%
GGTAAAATTTACTCTATTGC+TGG + chr6.3:10597726-10597745 MS.gene83190:CDS 30.0%
GTACTATAAAACTCAAACCT+TGG - chr6.3:10597756-10597775 None:intergenic 30.0%
GTTAAATGGAGCTGAAAATT+GGG + chr6.3:10597677-10597696 MS.gene83190:CDS 30.0%
TGGGTTTCTAATATGTATAG+TGG + chr6.3:10597696-10597715 MS.gene83190:CDS 30.0%
TGTTAAATGGAGCTGAAAAT+TGG + chr6.3:10597676-10597695 MS.gene83190:CDS 30.0%
TTCAAGTCCTTGAACAAAAA+GGG - chr6.3:10597925-10597944 None:intergenic 30.0%
TTGAATAGTGTGAAAGATGT+TGG + chr6.3:10597651-10597670 MS.gene83190:CDS 30.0%
! AAAGATGTTGGAGTGTTAAA+TGG + chr6.3:10597663-10597682 MS.gene83190:CDS 30.0%
! AGTTACAAGTGCTTATGTTT+TGG + chr6.3:10597428-10597447 MS.gene83190:CDS 30.0%
! ATCTTGAGGCTTTTATTATC+TGG - chr6.3:10597273-10597292 None:intergenic 30.0%
! CAAGACCATAATAATGGAAT+TGG + chr6.3:10597204-10597223 MS.gene83190:CDS 30.0%
! GAAAGTGAGTGTTTAAGATT+TGG - chr6.3:10596769-10596788 None:intergenic 30.0%
! GACATAGTTTATGATTGGTT+TGG - chr6.3:10596851-10596870 None:intergenic 30.0%
! GGATTTGTAAATGCTTTAGA+AGG + chr6.3:10597615-10597634 MS.gene83190:CDS 30.0%
! GTTACTTTGTTTCCAAACAA+TGG + chr6.3:10597018-10597037 MS.gene83190:CDS 30.0%
! TATGGATTGTAGATCAAGAT+TGG + chr6.3:10597506-10597525 MS.gene83190:CDS 30.0%
! TTTTCTACCCTTTTTGTTCA+AGG + chr6.3:10597915-10597934 MS.gene83190:CDS 30.0%
!! GTTGTTGATTTGTTGAAACA+TGG + chr6.3:10597243-10597262 MS.gene83190:CDS 30.0%
!!! AAAACCACTTTTTCAACCTT+AGG - chr6.3:10597477-10597496 None:intergenic 30.0%
AAGTTATGTTACCAGCAAGA+GGG - chr6.3:10596813-10596832 None:intergenic 35.0%
ACAACCTAAGGTTGAAAAAG+TGG + chr6.3:10597470-10597489 MS.gene83190:CDS 35.0%
AGAATTAGAACATGCAACAC+AGG - chr6.3:10597118-10597137 None:intergenic 35.0%
CCAATGCAAAAACCATTGTT+TGG - chr6.3:10597033-10597052 None:intergenic 35.0%
CCCTTGACATAGTTTATGAT+TGG - chr6.3:10596856-10596875 None:intergenic 35.0%
GAAAGTAGGAATAACAATGG+TGG + chr6.3:10597849-10597868 MS.gene83190:CDS 35.0%
GGTGAAAGTAGGAATAACAA+TGG + chr6.3:10597846-10597865 MS.gene83190:CDS 35.0%
TAGAAGAAGAGAAGTTCAAC+TGG - chr6.3:10596703-10596722 None:intergenic 35.0%
! AACAATGGTGGAATTGAGAT+TGG + chr6.3:10597861-10597880 MS.gene83190:CDS 35.0%
! CATTTTCTCTTGGTGAAAGT+AGG + chr6.3:10597835-10597854 MS.gene83190:CDS 35.0%
! CCAAACAATGGTTTTTGCAT+TGG + chr6.3:10597030-10597049 MS.gene83190:CDS 35.0%
! TGTGTTTGAGACAAAGAACT+TGG + chr6.3:10597581-10597600 MS.gene83190:CDS 35.0%
! TTTGAGACAAAGAACTTGGT+TGG + chr6.3:10597585-10597604 MS.gene83190:CDS 35.0%
!! AGTGAAGTTGGTGATGAAAA+AGG - chr6.3:10596640-10596659 None:intergenic 35.0%
!! ATTTTCCATCTAAAGCAGCA+TGG - chr6.3:10597068-10597087 None:intergenic 35.0%
!! GATTGGTTTGGCTTTAAGTA+AGG + chr6.3:10597878-10597897 MS.gene83190:CDS 35.0%
!! GTTGATTTGTTGAAACATGG+TGG + chr6.3:10597246-10597265 MS.gene83190:CDS 35.0%
!!! AAAACAGGAGCATTTTCTCT+TGG + chr6.3:10597825-10597844 MS.gene83190:CDS 35.0%
!!! AGGTTTTGTTGTGTCAAGAT+AGG - chr6.3:10596620-10596639 None:intergenic 35.0%
!!! GGTTTTGTTGTGTCAAGATA+GGG - chr6.3:10596619-10596638 None:intergenic 35.0%
AAAGTGAGTGGAAGTGAAGT+TGG - chr6.3:10596652-10596671 None:intergenic 40.0%
AAGAAGAGAAGTTCAACTGG+TGG - chr6.3:10596700-10596719 None:intergenic 40.0%
AGCAAAAGCAGAACAACCTA+AGG + chr6.3:10597458-10597477 MS.gene83190:CDS 40.0%
CAAGTTATGTTACCAGCAAG+AGG - chr6.3:10596814-10596833 None:intergenic 40.0%
CTCTTGCTGGTAACATAACT+TGG + chr6.3:10596812-10596831 MS.gene83190:CDS 40.0%
! TGGTGGAATTGAGATTGGTT+TGG + chr6.3:10597866-10597885 MS.gene83190:CDS 40.0%
!! GGCTTTAAGTAAGGAAGACA+TGG + chr6.3:10597887-10597906 MS.gene83190:CDS 40.0%
ACTCTATTGCTGGATCTCCA+AGG + chr6.3:10597736-10597755 MS.gene83190:CDS 45.0%
CAATACTTTCTCCCTCTTGC+TGG + chr6.3:10596799-10596818 MS.gene83190:CDS 45.0%
!! ACACACCATGCTGCTTTAGA+TGG + chr6.3:10597060-10597079 MS.gene83190:CDS 45.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 10596565 10597953 10596565 ID=MS.gene83190
chr6.3 mRNA 10596565 10597953 10596565 ID=MS.gene83190.t1;Parent=MS.gene83190
chr6.3 exon 10596565 10597953 10596565 ID=MS.gene83190.t1.exon1;Parent=MS.gene83190.t1
chr6.3 CDS 10596565 10597953 10596565 ID=cds.MS.gene83190.t1;Parent=MS.gene83190.t1
Gene Sequence

>MS.gene83190

ATGGCACAACATGAAGAATCATTCAAAGTTGTTCAAGTTTGCGATGTTGAACCCTATCTTGACACAACAAAACCTTTTTCATCACCAACTTCACTTCCACTCACTTTCTTTGATCTTTTATGGTTAAGATTTCCACCAGTTGAACTTCTCTTCTTCTATGAACTCACAAACACAACAACTTTTTTCTATGACACTCTTCTTCCAAATCTTAAACACTCACTTTCACTCACACTTCAATACTTTCTCCCTCTTGCTGGTAACATAACTTGGTCTAGTGATTCATCCAAACCAATCATAAACTATGTCAAGGGAGATTCTATTTCTTTCAATGTTGTTGAGTCCAAAGAAAGTTTCAAAGATCTTTCTTCTCATCATTGTGAAGCTTCAAAAAGACATCATTTGATACCACATTTGAAAATTTCTCATGAAAAGGCTTCTTTGCTTGCAATACAAGTTACTTTGTTTCCAAACAATGGTTTTTGCATTGGAATAACAACACACCATGCTGCTTTAGATGGAAAATCTTTAAGTACTTTTATGAAATCATGGTCCTGTGTTGCATGTTCTAATTCTAACCTTGATTCATCTTTTTTATCATTACCTGAAAATCTAACACCTTTTTTTGATAGATCATTGATACAAGACCATAATAATGGAATTGGAATTAGTGAAGCATATGTTGTTGATTTGTTGAAACATGGTGGACCAGATAATAAAAGCCTCAAGATTATGAATTTTTCTGGTCCAATGAAACATGATGTAGTTAAAAGTTTGTATGAATTGACACCTTCAAATATTCAAAAGCTTAAAGAACATGGAAAAAATAATATGAAAATGAAGGTTATAAATTTGTCAACTTTTTTAGTTACAAGTGCTTATGTTTTGGCATGTTTAGCAAAAGCAGAACAACCTAAGGTTGAAAAAGTGGTTTTCATAATTTCTATGGATTGTAGATCAAGATTGGACCCTTCGATTTCTACTATGTATATTGGAAATTGTATTGCAGGACAAAAGATTGTGTTTGAGACAAAGAACTTGGTTGGAAAAAATGGATTTGTAAATGCTTTAGAAGGGATAAATAAAGCTTTGAATAGTGTGAAAGATGTTGGAGTGTTAAATGGAGCTGAAAATTGGGTTTCTAATATGTATAGTGGAATTGAAGGTAAAATTTACTCTATTGCTGGATCTCCAAGGTTTGAGTTTTATAGTACTGATTTTGGATTTGGAAAGCCAAAAAAAGTTGATATGACTTCAACTGATAAAACAGGAGCATTTTCTCTTGGTGAAAGTAGGAATAACAATGGTGGAATTGAGATTGGTTTGGCTTTAAGTAAGGAAGACATGGAAGCTTTTTCTACCCTTTTTGTTCAAGGACTTGAATCCATTTAA
Protein sequence

>MS.gene83190.t1

MAQHEESFKVVQVCDVEPYLDTTKPFSSPTSLPLTFFDLLWLRFPPVELLFFYELTNTTTFFYDTLLPNLKHSLSLTLQYFLPLAGNITWSSDSSKPIINYVKGDSISFNVVESKESFKDLSSHHCEASKRHHLIPHLKISHEKASLLAIQVTLFPNNGFCIGITTHHAALDGKSLSTFMKSWSCVACSNSNLDSSFLSLPENLTPFFDRSLIQDHNNGIGISEAYVVDLLKHGGPDNKSLKIMNFSGPMKHDVVKSLYELTPSNIQKLKEHGKNNMKMKVINLSTFLVTSAYVLACLAKAEQPKVEKVVFIISMDCRSRLDPSISTMYIGNCIAGQKIVFETKNLVGKNGFVNALEGINKALNSVKDVGVLNGAENWVSNMYSGIEGKIYSIAGSPRFEFYSTDFGFGKPKKVDMTSTDKTGAFSLGESRNNNGGIEIGLALSKEDMEAFSTLFVQGLESI