Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83228.t1 | KEH38016.1 | 99.4 | 156 | 1 | 0 | 1 | 156 | 31 | 186 | 1.20E-78 | 302.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83228.t1 | P49592 | 79.9 | 154 | 29 | 1 | 1 | 152 | 1 | 154 | 1.1e-62 | 240.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83228.t1 | A0A072V8R2 | 99.4 | 156 | 1 | 0 | 1 | 156 | 31 | 186 | 9.0e-79 | 302.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene83228.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene83228 | MS.gene82237 | PPI |
| MS.gene83228 | MS.gene77045 | PPI |
| MS.gene76728 | MS.gene83228 | PPI |
| MS.gene83228 | MS.gene42075 | PPI |
| MS.gene83228 | MS.gene48819 | PPI |
| MS.gene87743 | MS.gene83228 | PPI |
| MS.gene87064 | MS.gene83228 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83228.t1 | MTR_2g056000 | 99.359 | 156 | 1 | 0 | 1 | 156 | 31 | 186 | 8.36e-115 | 323 |
| MS.gene83228.t1 | MTR_4g112380 | 84.967 | 153 | 23 | 0 | 1 | 153 | 1 | 153 | 1.18e-97 | 278 |
| MS.gene83228.t1 | MTR_1g072790 | 35.780 | 109 | 68 | 1 | 8 | 114 | 26 | 134 | 8.97e-19 | 78.6 |
| MS.gene83228.t1 | MTR_7g061270 | 32.432 | 111 | 73 | 1 | 12 | 120 | 27 | 137 | 1.19e-17 | 75.5 |
| MS.gene83228.t1 | MTR_7g100650 | 32.432 | 111 | 73 | 1 | 12 | 120 | 27 | 137 | 1.36e-17 | 75.5 |
| MS.gene83228.t1 | MTR_4g133952 | 39.744 | 78 | 47 | 0 | 12 | 89 | 59 | 136 | 2.18e-17 | 76.3 |
| MS.gene83228.t1 | MTR_1g088860 | 37.179 | 78 | 49 | 0 | 12 | 89 | 37 | 114 | 2.77e-17 | 75.1 |
| MS.gene83228.t1 | MTR_1g083070 | 35.443 | 79 | 51 | 0 | 13 | 91 | 6 | 84 | 2.03e-16 | 71.2 |
| MS.gene83228.t1 | MTR_4g119500 | 32.955 | 88 | 59 | 0 | 12 | 99 | 23 | 110 | 3.30e-16 | 70.9 |
| MS.gene83228.t1 | MTR_3g058980 | 37.179 | 78 | 49 | 0 | 12 | 89 | 28 | 105 | 4.02e-16 | 72.0 |
| MS.gene83228.t1 | MTR_1g039040 | 30.337 | 89 | 62 | 0 | 11 | 99 | 6 | 94 | 4.28e-16 | 72.0 |
| MS.gene83228.t1 | MTR_0392s0020 | 33.333 | 105 | 64 | 1 | 12 | 110 | 19 | 123 | 5.50e-16 | 70.5 |
| MS.gene83228.t1 | MTR_5g095740 | 34.118 | 85 | 56 | 0 | 7 | 91 | 19 | 103 | 9.35e-16 | 70.9 |
| MS.gene83228.t1 | MTR_8g093920 | 30.088 | 113 | 73 | 1 | 12 | 124 | 41 | 147 | 3.41e-15 | 70.1 |
| MS.gene83228.t1 | MTR_2g026710 | 33.333 | 78 | 52 | 0 | 12 | 89 | 18 | 95 | 1.99e-14 | 67.0 |
| MS.gene83228.t1 | MTR_8g091720 | 32.143 | 84 | 57 | 0 | 5 | 88 | 22 | 105 | 2.52e-14 | 67.4 |
| MS.gene83228.t1 | MTR_4g133938 | 35.135 | 74 | 48 | 0 | 16 | 89 | 24 | 97 | 2.72e-13 | 63.5 |
| MS.gene83228.t1 | MTR_1g029070 | 26.415 | 106 | 78 | 0 | 1 | 106 | 42 | 147 | 2.57e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83228.t1 | AT5G23090 | 79.870 | 154 | 29 | 1 | 1 | 152 | 1 | 154 | 3.66e-89 | 257 |
| MS.gene83228.t1 | AT5G23090 | 79.870 | 154 | 29 | 1 | 1 | 152 | 1 | 154 | 3.66e-89 | 257 |
| MS.gene83228.t1 | AT5G23090 | 79.870 | 154 | 29 | 1 | 1 | 152 | 1 | 154 | 3.66e-89 | 257 |
| MS.gene83228.t1 | AT5G23090 | 79.221 | 154 | 29 | 2 | 1 | 152 | 1 | 153 | 1.73e-86 | 250 |
| MS.gene83228.t1 | AT5G08190 | 83.803 | 142 | 23 | 0 | 1 | 142 | 1 | 142 | 1.06e-79 | 233 |
| MS.gene83228.t1 | AT5G08190 | 83.099 | 142 | 23 | 1 | 1 | 142 | 1 | 141 | 4.63e-77 | 226 |
| MS.gene83228.t1 | AT5G23090 | 71.429 | 154 | 29 | 2 | 1 | 152 | 1 | 141 | 3.57e-75 | 221 |
| MS.gene83228.t1 | AT2G38880 | 35.484 | 93 | 58 | 1 | 12 | 102 | 22 | 114 | 2.01e-18 | 77.4 |
| MS.gene83228.t1 | AT2G38880 | 35.484 | 93 | 58 | 1 | 12 | 102 | 22 | 114 | 2.01e-18 | 77.4 |
| MS.gene83228.t1 | AT2G38880 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 3.45e-18 | 76.3 |
| MS.gene83228.t1 | AT2G38880 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 3.74e-18 | 76.3 |
| MS.gene83228.t1 | AT2G38880 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 3.74e-18 | 76.3 |
| MS.gene83228.t1 | AT2G38880 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 3.74e-18 | 76.3 |
| MS.gene83228.t1 | AT2G38880 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 4.34e-18 | 75.1 |
| MS.gene83228.t1 | AT2G38880 | 36.471 | 85 | 52 | 1 | 12 | 94 | 22 | 106 | 5.72e-18 | 75.9 |
| MS.gene83228.t1 | AT2G38880 | 32.292 | 96 | 65 | 0 | 12 | 107 | 22 | 117 | 5.17e-17 | 73.6 |
| MS.gene83228.t1 | AT2G38880 | 32.292 | 96 | 65 | 0 | 12 | 107 | 22 | 117 | 5.17e-17 | 73.6 |
| MS.gene83228.t1 | AT2G38880 | 32.292 | 96 | 65 | 0 | 12 | 107 | 22 | 117 | 5.17e-17 | 73.6 |
| MS.gene83228.t1 | AT2G37060 | 38.750 | 80 | 49 | 0 | 12 | 91 | 31 | 110 | 5.27e-17 | 73.9 |
| MS.gene83228.t1 | AT2G37060 | 38.750 | 80 | 49 | 0 | 12 | 91 | 31 | 110 | 5.27e-17 | 73.9 |
| MS.gene83228.t1 | AT2G37060 | 38.750 | 80 | 49 | 0 | 12 | 91 | 31 | 110 | 5.27e-17 | 73.9 |
| MS.gene83228.t1 | AT3G53340 | 32.558 | 129 | 81 | 2 | 12 | 134 | 30 | 158 | 6.10e-17 | 73.9 |
| MS.gene83228.t1 | AT3G53340 | 32.558 | 129 | 81 | 2 | 12 | 134 | 30 | 158 | 6.10e-17 | 73.9 |
| MS.gene83228.t1 | AT3G53340 | 39.744 | 78 | 47 | 0 | 12 | 89 | 30 | 107 | 2.88e-16 | 70.9 |
| MS.gene83228.t1 | AT4G14540 | 31.818 | 88 | 60 | 0 | 12 | 99 | 22 | 109 | 3.64e-16 | 71.6 |
| MS.gene83228.t1 | AT5G47670 | 38.462 | 78 | 48 | 0 | 12 | 89 | 30 | 107 | 5.80e-16 | 72.0 |
| MS.gene83228.t1 | AT5G47670 | 37.500 | 80 | 50 | 0 | 12 | 91 | 59 | 138 | 9.73e-16 | 72.0 |
| MS.gene83228.t1 | AT5G47670 | 37.500 | 80 | 50 | 0 | 12 | 91 | 59 | 138 | 9.73e-16 | 72.0 |
| MS.gene83228.t1 | AT3G53340 | 34.737 | 95 | 62 | 0 | 12 | 106 | 30 | 124 | 1.06e-15 | 70.1 |
| MS.gene83228.t1 | AT3G53340 | 34.737 | 95 | 62 | 0 | 12 | 106 | 30 | 124 | 1.06e-15 | 70.1 |
| MS.gene83228.t1 | AT5G47640 | 33.735 | 83 | 55 | 0 | 7 | 89 | 23 | 105 | 4.38e-15 | 69.3 |
| MS.gene83228.t1 | AT1G21970 | 35.000 | 80 | 52 | 0 | 12 | 91 | 60 | 139 | 9.86e-15 | 69.3 |
| MS.gene83228.t1 | AT1G09030 | 33.750 | 80 | 53 | 0 | 12 | 91 | 4 | 83 | 3.08e-14 | 65.9 |
| MS.gene83228.t1 | AT2G13570 | 35.065 | 77 | 50 | 0 | 12 | 88 | 37 | 113 | 8.67e-14 | 66.2 |
| MS.gene83228.t1 | AT2G47810 | 32.895 | 76 | 51 | 0 | 12 | 87 | 52 | 127 | 3.89e-13 | 63.5 |
Find 38 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATCAGGTTCTTGGATT+TGG | 0.252299 | 2.4:+34711688 | MS.gene83228:intron |
| GAGCATGTATTGAAAGCTTT+AGG | 0.252682 | 2.4:+34710888 | MS.gene83228:CDS |
| TTATTTATATATCAGGTTCT+TGG | 0.293604 | 2.4:+34711682 | MS.gene83228:intron |
| CTGCAGCAAGACTCTATAAA+AGG | 0.346677 | 2.4:+34712656 | MS.gene83228:intron |
| AACATTCAATTAACAAATCC+TGG | 0.352577 | 2.4:-34709935 | None:intergenic |
| AGCATGTATTGAAAGCTTTA+GGG | 0.375222 | 2.4:+34710889 | MS.gene83228:CDS |
| TCTAAACTTTGGTCAGCATC+TGG | 0.377371 | 2.4:-34712794 | None:intergenic |
| TTGGTCAGCATCTGGTTGAT+TGG | 0.384189 | 2.4:-34712786 | None:intergenic |
| AAAGTTAGTTCTCTAAACTT+TGG | 0.415113 | 2.4:-34712805 | None:intergenic |
| TAATACAAAGATGGAGCCTA+TGG | 0.442593 | 2.4:+34709709 | None:intergenic |
| CTCTGCTAATGCTTGTTCCT+CGG | 0.457821 | 2.4:-34712708 | None:intergenic |
| CTCAGCTGCACCGCTCCACT+TGG | 0.465501 | 2.4:-34712681 | None:intergenic |
| AAAGCTTTCAATACATGCTC+AGG | 0.483166 | 2.4:-34710885 | None:intergenic |
| TCTCTTGCAACACGGACATC+AGG | 0.499892 | 2.4:-34709909 | None:intergenic |
| GAGGCACGTGCTAGAATGAA+TGG | 0.500006 | 2.4:+34712749 | MS.gene83228:CDS |
| TATGTAACAGAGAGGAAAGA+AGG | 0.521621 | 2.4:+34710853 | MS.gene83228:CDS |
| GAAGATGCTTCGCTACCTAA+AGG | 0.522042 | 2.4:+34709752 | MS.gene83228:CDS |
| TTGTTAATTGAATGTTGTGT+AGG | 0.530693 | 2.4:+34709942 | MS.gene83228:CDS |
| AAGCATTAGCAGAGCAGCAA+AGG | 0.547129 | 2.4:+34712717 | MS.gene83228:CDS |
| GATTTAGCAACAATATCCAT+AGG | 0.550892 | 2.4:-34709725 | None:intergenic |
| CATTTGACTCTGATGAGACG+AGG | 0.555057 | 2.4:-34710827 | None:intergenic |
| ATCTGGTTGATTGGAAGTAA+CGG | 0.576071 | 2.4:-34712777 | None:intergenic |
| TGGATTTGGCGAGTACATTG+AGG | 0.592411 | 2.4:+34711702 | MS.gene83228:CDS |
| GGATATTGTTGCTAAATCAA+AGG | 0.593602 | 2.4:+34709730 | MS.gene83228:CDS |
| ACATTCAATTAACAAATCCT+GGG | 0.595298 | 2.4:-34709934 | None:intergenic |
| GCATGTATTGAAAGCTTTAG+GGG | 0.617694 | 2.4:+34710890 | MS.gene83228:CDS |
| AGCATATGAACAGCACAAGA+TGG | 0.618530 | 2.4:+34711735 | MS.gene83228:CDS |
| CCTGGGTATCTCTTGCAACA+CGG | 0.619026 | 2.4:-34709917 | None:intergenic |
| CCGTGTTGCAAGAGATACCC+AGG | 0.621479 | 2.4:+34709917 | MS.gene83228:CDS |
| CTTGCAACACGGACATCAGG+TGG | 0.632584 | 2.4:-34709906 | None:intergenic |
| GCAGCAAAGGATGTTTGCAG+AGG | 0.645184 | 2.4:+34712730 | MS.gene83228:CDS |
| ACTCTATAAAAGGTGCCAAG+TGG | 0.646573 | 2.4:+34712666 | MS.gene83228:CDS |
| ATAAAAGGTGCCAAGTGGAG+CGG | 0.655175 | 2.4:+34712671 | MS.gene83228:CDS |
| GCACGTGCTAGAATGAATGG+AGG | 0.666011 | 2.4:+34712752 | MS.gene83228:CDS |
| CACGTGCTAGAATGAATGGA+GGG | 0.684842 | 2.4:+34712753 | MS.gene83228:CDS |
| AAATGAAGTATGTAACAGAG+AGG | 0.704349 | 2.4:+34710845 | MS.gene83228:CDS |
| CGGTGCAGCTGAGATGACCG+AGG | 0.707136 | 2.4:+34712691 | MS.gene83228:CDS |
| ACAGCACAAGATGGAGACAG+TGG | 0.723145 | 2.4:+34711744 | MS.gene83228:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTTAAAATAAA+GGG | + | chr2.4:34711259-34711278 | MS.gene83228:intron | 0.0% |
| !!! | TTTATTTTTTTTTAAAATAA+AGG | + | chr2.4:34711258-34711277 | MS.gene83228:intron | 0.0% |
| !! | AAAATAAAAATTATACCTTT+AGG | - | chr2.4:34709770-34709789 | None:intergenic | 10.0% |
| !! | CATATTATTAATTAATTAAC+TGG | + | chr2.4:34712551-34712570 | MS.gene83228:intron | 10.0% |
| !! | AAAACAAATGATAGTTAATA+TGG | - | chr2.4:34711148-34711167 | None:intergenic | 15.0% |
| !! | AAATAATAGATAAATTATGC+AGG | - | chr2.4:34710276-34710295 | None:intergenic | 15.0% |
| !! | ATTGAAATCTTTATGATTTA+TGG | + | chr2.4:34712355-34712374 | MS.gene83228:intron | 15.0% |
| !! | CAATCAAATTAAAATTGAAA+AGG | - | chr2.4:34710964-34710983 | None:intergenic | 15.0% |
| !! | GTCATATTTATTTATATATC+AGG | + | chr2.4:34711675-34711694 | MS.gene83228:intron | 15.0% |
| !!! | TTATTTTCAAATAATACTAG+TGG | + | chr2.4:34712066-34712085 | MS.gene83228:intron | 15.0% |
| !!! | TTTTTTTTAAAATAAAGGGA+GGG | + | chr2.4:34711263-34711282 | MS.gene83228:intron | 15.0% |
| !!! | TTTTTTTTTAAAATAAAGGG+AGG | + | chr2.4:34711262-34711281 | MS.gene83228:intron | 15.0% |
| !! | AATTATGGCTTCATTAATTA+TGG | - | chr2.4:34710134-34710153 | None:intergenic | 20.0% |
| !! | ATATTGTAATCAATTGTCAA+TGG | - | chr2.4:34711445-34711464 | None:intergenic | 20.0% |
| !! | ATCAAAATTTGGAGATAAAA+GGG | - | chr2.4:34710935-34710954 | None:intergenic | 20.0% |
| !! | TTATTTATATATCAGGTTCT+TGG | + | chr2.4:34711682-34711701 | MS.gene83228:intron | 20.0% |
| !!! | ATTGATAACTCAAACAATTT+GGG | - | chr2.4:34711992-34712011 | None:intergenic | 20.0% |
| !!! | GTTTAGAATTTTGCAATAAA+AGG | + | chr2.4:34711522-34711541 | MS.gene83228:intron | 20.0% |
| !!! | TATTGATAACTCAAACAATT+TGG | - | chr2.4:34711993-34712012 | None:intergenic | 20.0% |
| ! | AACATTCAATTAACAAATCC+TGG | - | chr2.4:34709938-34709957 | None:intergenic | 25.0% |
| ! | ACATTCAATTAACAAATCCT+GGG | - | chr2.4:34709937-34709956 | None:intergenic | 25.0% |
| ! | AGAGATGAATTCTGTTAATT+GGG | + | chr2.4:34711953-34711972 | MS.gene83228:intron | 25.0% |
| ! | AGATAACATGACATAATTTG+TGG | + | chr2.4:34711820-34711839 | MS.gene83228:intron | 25.0% |
| ! | ATCCATTGTGGATATATTAT+AGG | + | chr2.4:34711903-34711922 | MS.gene83228:intron | 25.0% |
| ! | CAGTTTCAATATATGATTCA+TGG | + | chr2.4:34710741-34710760 | MS.gene83228:intron | 25.0% |
| ! | CATCAAAATTTGGAGATAAA+AGG | - | chr2.4:34710936-34710955 | None:intergenic | 25.0% |
| ! | CATGAATCATATATTGAAAC+TGG | - | chr2.4:34710743-34710762 | None:intergenic | 25.0% |
| ! | GAAGTATATCATATCATCTA+AGG | + | chr2.4:34710581-34710600 | MS.gene83228:intron | 25.0% |
| ! | TAGAGATGAATTCTGTTAAT+TGG | + | chr2.4:34711952-34711971 | MS.gene83228:intron | 25.0% |
| ! | TCAAACAAAATGGATGTATT+TGG | + | chr2.4:34710493-34710512 | MS.gene83228:intron | 25.0% |
| ! | TCTATATCTCAACTATAATG+AGG | + | chr2.4:34710691-34710710 | MS.gene83228:intron | 25.0% |
| ! | TGTATTTCGAAAACTTAAAC+TGG | - | chr2.4:34711563-34711582 | None:intergenic | 25.0% |
| ! | TTGTTAATTGAATGTTGTGT+AGG | + | chr2.4:34709942-34709961 | MS.gene83228:CDS | 25.0% |
| ! | TTTATGATTTATGGATCTCT+GGG | + | chr2.4:34712364-34712383 | MS.gene83228:intron | 25.0% |
| !! | AAAAAATCTGAAACAAACCA+AGG | - | chr2.4:34710088-34710107 | None:intergenic | 25.0% |
| !! | AAAAATCTGAAACAAACCAA+GGG | - | chr2.4:34710087-34710106 | None:intergenic | 25.0% |
| !! | CTTTCTGAATACTGTTTTAT+GGG | - | chr2.4:34712272-34712291 | None:intergenic | 25.0% |
| !! | CTTTTGCGTATATTTTGTAA+CGG | + | chr2.4:34710556-34710575 | MS.gene83228:intron | 25.0% |
| !! | GATCTAAAACAACACATTTA+TGG | - | chr2.4:34710721-34710740 | None:intergenic | 25.0% |
| !! | GATGTATTTGGTTCAAAATT+TGG | + | chr2.4:34710505-34710524 | MS.gene83228:intron | 25.0% |
| !!! | ATGTTTTATTTTGTTGTGTC+TGG | + | chr2.4:34711493-34711512 | MS.gene83228:intron | 25.0% |
| !!! | ATTTTTTTTTAAACCCACCA+CGG | + | chr2.4:34711414-34711433 | MS.gene83228:intron | 25.0% |
| !!! | GAAAATATTAAAAGTACCCT+TGG | + | chr2.4:34712017-34712036 | MS.gene83228:intron | 25.0% |
| !!! | TCAAAGAAAGTTGATGTATT+TGG | - | chr2.4:34710532-34710551 | None:intergenic | 25.0% |
| !!! | TGTTTTATTTTGTTGTGTCT+GGG | + | chr2.4:34711494-34711513 | MS.gene83228:intron | 25.0% |
| !!! | TTTATCTCCAAATTTTGATG+TGG | + | chr2.4:34710936-34710955 | MS.gene83228:intron | 25.0% |
| AAAGGATCCACATCAAAATT+TGG | - | chr2.4:34710946-34710965 | None:intergenic | 30.0% | |
| AAATGAAGTATGTAACAGAG+AGG | + | chr2.4:34710845-34710864 | MS.gene83228:CDS | 30.0% | |
| AATTCATCTCTAACAATGCA+AGG | - | chr2.4:34711944-34711963 | None:intergenic | 30.0% | |
| AATTTGGAGATAAAAGGGTT+TGG | - | chr2.4:34710930-34710949 | None:intergenic | 30.0% | |
| ACGAATGCTTATATAACACA+AGG | - | chr2.4:34711600-34711619 | None:intergenic | 30.0% | |
| AGCATGTATTGAAAGCTTTA+GGG | + | chr2.4:34710889-34710908 | MS.gene83228:CDS | 30.0% | |
| ATATATCAGGTTCTTGGATT+TGG | + | chr2.4:34711688-34711707 | MS.gene83228:intron | 30.0% | |
| ATCTTAATGATACGATGTAG+CGG | + | chr2.4:34711174-34711193 | MS.gene83228:intron | 30.0% | |
| ATTCATCTCTAACAATGCAA+GGG | - | chr2.4:34711943-34711962 | None:intergenic | 30.0% | |
| ATTGATCTCAAAACATGTGA+CGG | - | chr2.4:34710352-34710371 | None:intergenic | 30.0% | |
| CAAGAATAACACCATTGAAA+AGG | - | chr2.4:34711050-34711069 | None:intergenic | 30.0% | |
| CTTTATGATTTATGGATCTC+TGG | + | chr2.4:34712363-34712382 | MS.gene83228:intron | 30.0% | |
| GATTTAGCAACAATATCCAT+AGG | - | chr2.4:34709728-34709747 | None:intergenic | 30.0% | |
| GGATATTGTTGCTAAATCAA+AGG | + | chr2.4:34709730-34709749 | MS.gene83228:CDS | 30.0% | |
| TAGTGATTAATAATTGCCCT+TGG | + | chr2.4:34710068-34710087 | MS.gene83228:intron | 30.0% | |
| TATTCAGAAAGCAAATAGAC+TGG | + | chr2.4:34712281-34712300 | MS.gene83228:intron | 30.0% | |
| TGCATTGTAGTTAGGTTTAA+TGG | + | chr2.4:34711079-34711098 | MS.gene83228:intron | 30.0% | |
| TGCCTATAATATATCCACAA+TGG | - | chr2.4:34711908-34711927 | None:intergenic | 30.0% | |
| TTATGAACACCACCAAAAAT+CGG | - | chr2.4:34710207-34710226 | None:intergenic | 30.0% | |
| ! | AGATTAGCTAGTATCCTTTA+GGG | + | chr2.4:34711120-34711139 | MS.gene83228:intron | 30.0% |
| ! | CAGTTCAATTCTGTTGTTTA+TGG | + | chr2.4:34712591-34712610 | MS.gene83228:intron | 30.0% |
| ! | CATATCATCTAAGGTGTAAA+TGG | + | chr2.4:34710590-34710609 | MS.gene83228:intron | 30.0% |
| ! | GCTTTCTGAATACTGTTTTA+TGG | - | chr2.4:34712273-34712292 | None:intergenic | 30.0% |
| ! | TAGATTAGCTAGTATCCTTT+AGG | + | chr2.4:34711119-34711138 | MS.gene83228:intron | 30.0% |
| ! | TGATTTGTATCTTTCTCATG+TGG | + | chr2.4:34711022-34711041 | MS.gene83228:intron | 30.0% |
| ! | TGTTGTTTATGGATTGACTT+TGG | + | chr2.4:34712602-34712621 | MS.gene83228:intron | 30.0% |
| ! | TTTAAAATAAAGGGAGGGAA+AGG | + | chr2.4:34711268-34711287 | MS.gene83228:intron | 30.0% |
| ! | TTTTTCTCTGCATTGTAGTT+AGG | + | chr2.4:34711071-34711090 | MS.gene83228:intron | 30.0% |
| !! | AAGCCATAATTGATTTTGTG+CGG | + | chr2.4:34710143-34710162 | MS.gene83228:intron | 30.0% |
| !! | ATCAGATAAAAGCATTGAAC+TGG | - | chr2.4:34712047-34712066 | None:intergenic | 30.0% |
| !!! | AATGCTGTTTTAACCAGTTT+AGG | + | chr2.4:34712135-34712154 | MS.gene83228:intron | 30.0% |
| !!! | TTTTGGTGGTGTTCATAATT+CGG | + | chr2.4:34710209-34710228 | MS.gene83228:intron | 30.0% |
| AAACACCTAAATGCAAAGAG+TGG | - | chr2.4:34711241-34711260 | None:intergenic | 35.0% | |
| AAAGCTTTCAATACATGCTC+AGG | - | chr2.4:34710888-34710907 | None:intergenic | 35.0% | |
| AAAGTGCAGGTCAAACAAAA+TGG | + | chr2.4:34710483-34710502 | MS.gene83228:intron | 35.0% | |
| AACAACATACTAATCCCTCT+AGG | + | chr2.4:34711339-34711358 | MS.gene83228:intron | 35.0% | |
| AACACCTAAATGCAAAGAGT+GGG | - | chr2.4:34711240-34711259 | None:intergenic | 35.0% | |
| AATTGAATGTTGTGTAGGTC+AGG | + | chr2.4:34709947-34709966 | MS.gene83228:intron | 35.0% | |
| ATCTGGTTGATTGGAAGTAA+CGG | - | chr2.4:34712780-34712799 | None:intergenic | 35.0% | |
| ATGCCAAGTTGCTTACAATA+TGG | - | chr2.4:34712164-34712183 | None:intergenic | 35.0% | |
| ATGTTGTTAATGCACCTAGA+GGG | - | chr2.4:34711327-34711346 | None:intergenic | 35.0% | |
| CAAGCAATTCAAAATGCACA+TGG | - | chr2.4:34711791-34711810 | None:intergenic | 35.0% | |
| GAGCATGTATTGAAAGCTTT+AGG | + | chr2.4:34710888-34710907 | MS.gene83228:CDS | 35.0% | |
| GTCATTAGGTCAACCTTTAT+CGG | - | chr2.4:34710438-34710457 | None:intergenic | 35.0% | |
| GTGATCATATCCATTGTAGA+AGG | + | chr2.4:34712245-34712264 | MS.gene83228:intron | 35.0% | |
| GTGGATATATTATAGGCACT+AGG | + | chr2.4:34711910-34711929 | MS.gene83228:intron | 35.0% | |
| TACAAAGACCTCTCAATTTG+AGG | + | chr2.4:34711867-34711886 | MS.gene83228:intron | 35.0% | |
| TACAATATGGGAACCTAAAC+TGG | - | chr2.4:34712151-34712170 | None:intergenic | 35.0% | |
| TAGGATCTATGTCTGTCTAA+GGG | + | chr2.4:34712101-34712120 | MS.gene83228:intron | 35.0% | |
| TAGTTAATATGGCTCCCTAA+AGG | - | chr2.4:34711137-34711156 | None:intergenic | 35.0% | |
| TATGTAACAGAGAGGAAAGA+AGG | + | chr2.4:34710853-34710872 | MS.gene83228:CDS | 35.0% | |
| TATGTTGTTAATGCACCTAG+AGG | - | chr2.4:34711328-34711347 | None:intergenic | 35.0% | |
| TGAGAGGTCTTTGTATCTTA+AGG | - | chr2.4:34711862-34711881 | None:intergenic | 35.0% | |
| TGCCAAGTTGCTTACAATAT+GGG | - | chr2.4:34712163-34712182 | None:intergenic | 35.0% | |
| TGGCATAAATTATGTCCTGT+GGG | + | chr2.4:34712178-34712197 | MS.gene83228:intron | 35.0% | |
| TTCCCATATTGTAAGCAACT+TGG | + | chr2.4:34712158-34712177 | MS.gene83228:intron | 35.0% | |
| TTGATCTCAAAACATGTGAC+GGG | - | chr2.4:34710351-34710370 | None:intergenic | 35.0% | |
| TTGGCATAAATTATGTCCTG+TGG | + | chr2.4:34712177-34712196 | MS.gene83228:intron | 35.0% | |
| ! | GAAAATGTAAGCAAAAGTGC+AGG | + | chr2.4:34710470-34710489 | MS.gene83228:intron | 35.0% |
| ! | GCATGTATTGAAAGCTTTAG+GGG | + | chr2.4:34710890-34710909 | MS.gene83228:CDS | 35.0% |
| ! | TCTTGATTTGAAGCCGATAA+AGG | + | chr2.4:34710422-34710441 | MS.gene83228:intron | 35.0% |
| ! | TTGCGTATATTTTGTAACGG+AGG | + | chr2.4:34710559-34710578 | MS.gene83228:intron | 35.0% |
| ! | TTTTATAGAGTCTTGCTGCA+GGG | - | chr2.4:34712657-34712676 | None:intergenic | 35.0% |
| ! | TTTTATGGGTCCTTCTACAA+TGG | - | chr2.4:34712258-34712277 | None:intergenic | 35.0% |
| !! | TATGGTGTTATCACCTATGT+TGG | - | chr2.4:34710169-34710188 | None:intergenic | 35.0% |
| !!! | TTATCGCATTTGCCGATTTT+TGG | + | chr2.4:34710192-34710211 | MS.gene83228:intron | 35.0% |
| AGAAAGCAAATAGACTGGAC+AGG | + | chr2.4:34712286-34712305 | MS.gene83228:intron | 40.0% | |
| AGCATATGAACAGCACAAGA+TGG | + | chr2.4:34711735-34711754 | MS.gene83228:CDS | 40.0% | |
| ATCAATGCACAGAACTTCCA+AGG | - | chr2.4:34711006-34711025 | None:intergenic | 40.0% | |
| ATTGACTATGATGCACCTAG+AGG | - | chr2.4:34711357-34711376 | None:intergenic | 40.0% | |
| CAATCAAAGAACCCACAGTA+AGG | - | chr2.4:34712330-34712349 | None:intergenic | 40.0% | |
| CGGCAAATGCGATAAACTTA+TGG | - | chr2.4:34710187-34710206 | None:intergenic | 40.0% | |
| CTAGGATCTATGTCTGTCTA+AGG | + | chr2.4:34712100-34712119 | MS.gene83228:intron | 40.0% | |
| CTAGTGGAAGCTGAATTTCT+AGG | + | chr2.4:34712082-34712101 | MS.gene83228:intron | 40.0% | |
| CTGCAGCAAGACTCTATAAA+AGG | + | chr2.4:34712656-34712675 | MS.gene83228:intron | 40.0% | |
| CTTACTGTGGGTTCTTTGAT+TGG | + | chr2.4:34712328-34712347 | MS.gene83228:intron | 40.0% | |
| GAATCCCACTCTTTGCATTT+AGG | + | chr2.4:34711233-34711252 | MS.gene83228:intron | 40.0% | |
| TAAATTATGTCCTGTGGGCA+AGG | + | chr2.4:34712183-34712202 | MS.gene83228:intron | 40.0% | |
| TATATTATTTGCCCTCCCCT+TGG | + | chr2.4:34710986-34711005 | MS.gene83228:intron | 40.0% | |
| TCAATGCACAGAACTTCCAA+GGG | - | chr2.4:34711005-34711024 | None:intergenic | 40.0% | |
| TCTAAACTTTGGTCAGCATC+TGG | - | chr2.4:34712797-34712816 | None:intergenic | 40.0% | |
| TGAGAGGTCTCTGTATCTTT+AGG | - | chr2.4:34712212-34712231 | None:intergenic | 40.0% | |
| TGGCCGCACAAAATCAATTA+TGG | - | chr2.4:34710149-34710168 | None:intergenic | 40.0% | |
| TGTTGTTAATGCACCTAGAG+GGG | - | chr2.4:34711326-34711345 | None:intergenic | 40.0% | |
| TTGACTATGATGCACCTAGA+GGG | - | chr2.4:34711356-34711375 | None:intergenic | 40.0% | |
| ! | ATGACATAATTTGTGGCCTG+TGG | + | chr2.4:34711827-34711846 | MS.gene83228:intron | 40.0% |
| ! | CTCATGTGGATCCTTTTCAA+TGG | + | chr2.4:34711036-34711055 | MS.gene83228:intron | 40.0% |
| ! | CTTTTATAGAGTCTTGCTGC+AGG | - | chr2.4:34712658-34712677 | None:intergenic | 40.0% |
| ! | GCTTACATTTTCGTAACCGA+GGG | - | chr2.4:34710462-34710481 | None:intergenic | 40.0% |
| ! | TGACATAATTTGTGGCCTGT+GGG | + | chr2.4:34711828-34711847 | MS.gene83228:intron | 40.0% |
| ! | TGCTTACATTTTCGTAACCG+AGG | - | chr2.4:34710463-34710482 | None:intergenic | 40.0% |
| !! | ACTCTATAAAAGGTGCCAAG+TGG | + | chr2.4:34712666-34712685 | MS.gene83228:CDS | 40.0% |
| !!! | TTTTTTTAAACCCACCACGG+AGG | + | chr2.4:34711417-34711436 | MS.gene83228:intron | 40.0% |
| AAGCATTAGCAGAGCAGCAA+AGG | + | chr2.4:34712717-34712736 | MS.gene83228:CDS | 45.0% | |
| ACAAACACTATTGCGAGAGC+AGG | + | chr2.4:34711205-34711224 | MS.gene83228:intron | 45.0% | |
| AGTCAATCATGAACCCCTCT+AGG | + | chr2.4:34711310-34711329 | MS.gene83228:intron | 45.0% | |
| CAAACACTATTGCGAGAGCA+GGG | + | chr2.4:34711206-34711225 | MS.gene83228:intron | 45.0% | |
| CAATGCACAGAACTTCCAAG+GGG | - | chr2.4:34711004-34711023 | None:intergenic | 45.0% | |
| CACGTGCTAGAATGAATGGA+GGG | + | chr2.4:34712753-34712772 | MS.gene83228:CDS | 45.0% | |
| CATTCTGAATGCACCTAGAG+GGG | - | chr2.4:34711386-34711405 | None:intergenic | 45.0% | |
| CATTTGACTCTGATGAGACG+AGG | - | chr2.4:34710830-34710849 | None:intergenic | 45.0% | |
| CCATTCTGAATGCACCTAGA+GGG | - | chr2.4:34711387-34711406 | None:intergenic | 45.0% | |
| CTCTGCTAATGCTTGTTCCT+CGG | - | chr2.4:34712711-34712730 | None:intergenic | 45.0% | |
| CTTCTTGTTCCTGGAAGACA+CGG | + | chr2.4:34710396-34710415 | MS.gene83228:intron | 45.0% | |
| GAAGATGCTTCGCTACCTAA+AGG | + | chr2.4:34709752-34709771 | MS.gene83228:CDS | 45.0% | |
| GTAAGGTTAAGCCGCTCATT+AGG | - | chr2.4:34712313-34712332 | None:intergenic | 45.0% | |
| TGGATTTGGCGAGTACATTG+AGG | + | chr2.4:34711702-34711721 | MS.gene83228:CDS | 45.0% | |
| TTGGTCAGCATCTGGTTGAT+TGG | - | chr2.4:34712789-34712808 | None:intergenic | 45.0% | |
| TTTAATGGCCATCTGTGCAG+TGG | + | chr2.4:34711094-34711113 | MS.gene83228:intron | 45.0% | |
| ! | AATATGAGCCCTGCTGCTTA+TGG | - | chr2.4:34712537-34712556 | None:intergenic | 45.0% |
| ! | ACCTCTCAATTTGAGGTCCA+GGG | + | chr2.4:34711874-34711893 | MS.gene83228:intron | 45.0% |
| ! | AGCATTGAACTGGTTCACCA+AGG | - | chr2.4:34712037-34712056 | None:intergenic | 45.0% |
| ! | ATATGAGCCCTGCTGCTTAT+GGG | - | chr2.4:34712536-34712555 | None:intergenic | 45.0% |
| ! | GCATTGAACTGGTTCACCAA+GGG | - | chr2.4:34712036-34712055 | None:intergenic | 45.0% |
| ! | TGATTTTGTGCGGCCAACAT+AGG | + | chr2.4:34710153-34710172 | MS.gene83228:intron | 45.0% |
| ! | TGGATCTCTGGGAGTTTGTA+TGG | + | chr2.4:34712375-34712394 | MS.gene83228:intron | 45.0% |
| !! | ATAAAAGGTGCCAAGTGGAG+CGG | + | chr2.4:34712671-34712690 | MS.gene83228:CDS | 45.0% |
| !!! | TCGCATTTGCCGATTTTTGG+TGG | + | chr2.4:34710195-34710214 | MS.gene83228:intron | 45.0% |
| !!! | TTTTATTTTTTTTAATTTGA+TGG | + | chr2.4:34709979-34709998 | MS.gene83228:intron | 5.0% |
| AATCTACGCCACTGCACAGA+TGG | - | chr2.4:34711105-34711124 | None:intergenic | 50.0% | |
| AATTGTCAATGGTGCCTCCG+TGG | - | chr2.4:34711434-34711453 | None:intergenic | 50.0% | |
| ACAGCACAAGATGGAGACAG+TGG | + | chr2.4:34711744-34711763 | MS.gene83228:CDS | 50.0% | |
| ACTGGACAGGTCCTAATGAG+CGG | + | chr2.4:34712299-34712318 | MS.gene83228:intron | 50.0% | |
| AGTGATGAGCATGCACACAC+AGG | + | chr2.4:34712472-34712491 | MS.gene83228:intron | 50.0% | |
| CCACAATGGATATGATCCCC+TGG | - | chr2.4:34711894-34711913 | None:intergenic | 50.0% | |
| CCAGGGGATCATATCCATTG+TGG | + | chr2.4:34711891-34711910 | MS.gene83228:intron | 50.0% | |
| CCCTCTAGGTGCATTCAGAA+TGG | + | chr2.4:34711384-34711403 | MS.gene83228:intron | 50.0% | |
| CCTGGGTATCTCTTGCAACA+CGG | - | chr2.4:34709920-34709939 | None:intergenic | 50.0% | |
| GAGCGGCTTAACCTTACTGT+GGG | + | chr2.4:34712316-34712335 | MS.gene83228:intron | 50.0% | |
| GAGGCACGTGCTAGAATGAA+TGG | + | chr2.4:34712749-34712768 | MS.gene83228:CDS | 50.0% | |
| GCACGTGCTAGAATGAATGG+AGG | + | chr2.4:34712752-34712771 | MS.gene83228:CDS | 50.0% | |
| GCAGCAAAGGATGTTTGCAG+AGG | + | chr2.4:34712730-34712749 | MS.gene83228:CDS | 50.0% | |
| GCCATTCTGAATGCACCTAG+AGG | - | chr2.4:34711388-34711407 | None:intergenic | 50.0% | |
| GGTTGACCTAATGACTCCCT+CGG | + | chr2.4:34710443-34710462 | MS.gene83228:intron | 50.0% | |
| GTGATGAGCATGCACACACA+GGG | + | chr2.4:34712473-34712492 | MS.gene83228:intron | 50.0% | |
| TACAGAGACCTCTCAGTGTG+AGG | + | chr2.4:34712217-34712236 | MS.gene83228:intron | 50.0% | |
| TCAAGACATCCGTGTCTTCC+AGG | - | chr2.4:34710408-34710427 | None:intergenic | 50.0% | |
| TCGTAACCGAGGGAGTCATT+AGG | - | chr2.4:34710452-34710471 | None:intergenic | 50.0% | |
| TCTCTTGCAACACGGACATC+AGG | - | chr2.4:34709912-34709931 | None:intergenic | 50.0% | |
| TGAGCGGCTTAACCTTACTG+TGG | + | chr2.4:34712315-34712334 | MS.gene83228:intron | 50.0% | |
| TGCTAGTCGCTTCTTGTTCC+TGG | + | chr2.4:34710387-34710406 | MS.gene83228:intron | 50.0% | |
| ! | CCTCTCAATTTGAGGTCCAG+GGG | + | chr2.4:34711875-34711894 | MS.gene83228:intron | 50.0% |
| ! | GACCTCTCAATTTGAGGTCC+AGG | + | chr2.4:34711873-34711892 | MS.gene83228:intron | 50.0% |
| ! | TAATTTGTGGCCTGTGGGCA+TGG | + | chr2.4:34711833-34711852 | MS.gene83228:intron | 50.0% |
| !! | TCTCAAAACATGTGACGGGC+AGG | - | chr2.4:34710347-34710366 | None:intergenic | 50.0% |
| CACCTTGACCTCACACTGAG+AGG | - | chr2.4:34712228-34712247 | None:intergenic | 55.0% | |
| CAGGAAACCACACGGCACAA+GGG | - | chr2.4:34710328-34710347 | None:intergenic | 55.0% | |
| CCCCTGGACCTCAAATTGAG+AGG | - | chr2.4:34711878-34711897 | None:intergenic | 55.0% | |
| CCGCAATCCCATAAGCAGCA+GGG | + | chr2.4:34712526-34712545 | MS.gene83228:intron | 55.0% | |
| CCGTGTTGCAAGAGATACCC+AGG | + | chr2.4:34709917-34709936 | MS.gene83228:CDS | 55.0% | |
| CTTGCAACACGGACATCAGG+TGG | - | chr2.4:34709909-34709928 | None:intergenic | 55.0% | |
| GACCTCTCAGTGTGAGGTCA+AGG | + | chr2.4:34712223-34712242 | MS.gene83228:intron | 55.0% | |
| GCACAGAACTTCCAAGGGGA+GGG | - | chr2.4:34711000-34711019 | None:intergenic | 55.0% | |
| GGATTGCGGCTCTCAAGCAT+TGG | - | chr2.4:34712515-34712534 | None:intergenic | 55.0% | |
| TGCACAGAACTTCCAAGGGG+AGG | - | chr2.4:34711001-34711020 | None:intergenic | 55.0% | |
| ! | CCCTGCTGCTTATGGGATTG+CGG | - | chr2.4:34712529-34712548 | None:intergenic | 55.0% |
| !! | CTTTAGGTTGCCTTGCCCAC+AGG | - | chr2.4:34712196-34712215 | None:intergenic | 55.0% |
| ACGATGACCCTTGTGCCGTG+TGG | + | chr2.4:34710318-34710337 | MS.gene83228:intron | 60.0% | |
| CTTAAGGCTGCCATGCCCAC+AGG | - | chr2.4:34711846-34711865 | None:intergenic | 60.0% | |
| GCAGGAAACCACACGGCACA+AGG | - | chr2.4:34710329-34710348 | None:intergenic | 60.0% | |
| GCCGCAATCCCATAAGCAGC+AGG | + | chr2.4:34712525-34712544 | MS.gene83228:intron | 60.0% | |
| GTCAATGGTGCCTCCGTGGT+GGG | - | chr2.4:34711430-34711449 | None:intergenic | 60.0% | |
| TGTCAATGGTGCCTCCGTGG+TGG | - | chr2.4:34711431-34711450 | None:intergenic | 60.0% | |
| !! | GTGACGGGCAGGAAACCACA+CGG | - | chr2.4:34710336-34710355 | None:intergenic | 60.0% |
| CGGTGCAGCTGAGATGACCG+AGG | + | chr2.4:34712691-34712710 | MS.gene83228:CDS | 65.0% | |
| CTCAGCTGCACCGCTCCACT+TGG | - | chr2.4:34712684-34712703 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 34709719 | 34712823 | 34709719 | ID=MS.gene83228 |
| chr2.4 | mRNA | 34709719 | 34712823 | 34709719 | ID=MS.gene83228.t1;Parent=MS.gene83228 |
| chr2.4 | exon | 34709719 | 34709773 | 34709719 | ID=MS.gene83228.t1.exon1;Parent=MS.gene83228.t1 |
| chr2.4 | CDS | 34709719 | 34709773 | 34709719 | ID=cds.MS.gene83228.t1;Parent=MS.gene83228.t1 |
| chr2.4 | exon | 34709874 | 34709963 | 34709874 | ID=MS.gene83228.t1.exon2;Parent=MS.gene83228.t1 |
| chr2.4 | CDS | 34709874 | 34709963 | 34709874 | ID=cds.MS.gene83228.t1;Parent=MS.gene83228.t1 |
| chr2.4 | exon | 34710817 | 34710911 | 34710817 | ID=MS.gene83228.t1.exon3;Parent=MS.gene83228.t1 |
| chr2.4 | CDS | 34710817 | 34710911 | 34710817 | ID=cds.MS.gene83228.t1;Parent=MS.gene83228.t1 |
| chr2.4 | exon | 34711697 | 34711765 | 34711697 | ID=MS.gene83228.t1.exon4;Parent=MS.gene83228.t1 |
| chr2.4 | CDS | 34711697 | 34711765 | 34711697 | ID=cds.MS.gene83228.t1;Parent=MS.gene83228.t1 |
| chr2.4 | exon | 34712662 | 34712823 | 34712662 | ID=MS.gene83228.t1.exon5;Parent=MS.gene83228.t1 |
| chr2.4 | CDS | 34712662 | 34712823 | 34712662 | ID=cds.MS.gene83228.t1;Parent=MS.gene83228.t1 |
| Gene Sequence |
| Protein sequence |
