AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83549

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83549.t1 MTR_2g104100 96.465 396 13 1 1 395 1 396 0.0 771
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83549.t1 AT1G52500 70.088 341 97 4 1 336 1 341 3.37e-170 481
MS.gene83549.t1 AT1G52500 73.333 285 71 2 1 284 1 281 4.43e-155 439
MS.gene83549.t1 AT1G52500 72.973 259 67 2 1 258 1 257 3.16e-142 405
MS.gene83549.t1 AT1G52500 72.973 259 67 2 1 258 1 257 3.16e-142 405
MS.gene83549.t1 AT1G52500 77.027 222 51 0 1 222 1 222 8.69e-130 372

Find 88 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACGGCGCTGACGAGAATT+TGG 0.221084 2.2:-653160 MS.gene83549:CDS
ATATTTCAGGCATTGGAAAT+TGG 0.240383 2.2:-655701 MS.gene83549:CDS
TTCTTTGAGGCTTTCCCTCT+GGG 0.288446 2.2:+653207 None:intergenic
CCTCTGCAGAGCTATATTTC+AGG 0.317206 2.2:-655714 MS.gene83549:intron
CTTTGATTGCTTCTCTCCCT+TGG 0.317683 2.2:+652963 None:intergenic
GTAGTCAATATCCCACTAAT+TGG 0.319108 2.2:-654179 MS.gene83549:CDS
TTGCTGTAACAAAGTATAAA+AGG 0.321116 2.2:-658378 MS.gene83549:intron
TTTCTTTGAGGCTTTCCCTC+TGG 0.329200 2.2:+653206 None:intergenic
AACCAGGCTCGGGGACTAAT+AGG 0.335713 2.2:-652993 MS.gene83549:CDS
ACCATCAACAAAAGCTTTGC+CGG 0.348394 2.2:+654131 None:intergenic
TATTTCAGGCATTGGAAATT+GGG 0.367779 2.2:-655700 MS.gene83549:CDS
TCACAAGTGTTAAAAGAAAC+TGG 0.374623 2.2:-653234 MS.gene83549:CDS
GAATTCGAAGCTTCCGTTGT+TGG 0.375577 2.2:-658596 MS.gene83549:CDS
CCGTTTCCCTCTTTCCAATT+CGG 0.381749 2.2:-658512 MS.gene83549:intron
ATCAGGTCCAAGCTCAGATA+TGG 0.382869 2.2:+656049 None:intergenic
ATTTCATCACCGCAGGTGGC+AGG 0.416756 2.2:-653380 MS.gene83549:CDS
CAGAGCTATATTTCAGGCAT+TGG 0.419170 2.2:-655708 MS.gene83549:CDS
AATTCGAAGCTTCCGTTGTT+GGG 0.422866 2.2:-658595 MS.gene83549:CDS
CAATCAAAGAAACGTGTTCA+AGG 0.450717 2.2:-652949 MS.gene83549:CDS
GCTGCAGCTAGACGATGGTT+TGG 0.452703 2.2:-656217 MS.gene83549:intron
ATTGTCATCGTCACTTTCCT+CGG 0.455015 2.2:+653068 None:intergenic
CAGATAGCTTCTAGCCTGTC+AGG 0.458232 2.2:-654509 MS.gene83549:CDS
TTCCTATTAGTCCCCGAGCC+TGG 0.459245 2.2:+652991 None:intergenic
GTAACTGTGTTAGGTATGGC+TGG 0.461478 2.2:-658421 MS.gene83549:intron
GCCGGAGCTACCGGAGGTAG+AGG 0.468617 2.2:-658717 MS.gene83549:CDS
CAAGAAGAAAACTGAAATCA+AGG 0.473543 2.2:-655979 MS.gene83549:CDS
GAGCACAATGCCGGAGCTAC+CGG 0.482856 2.2:-658726 None:intergenic
GAAAAGAAGAAACCAGGCTC+GGG 0.483523 2.2:-653003 MS.gene83549:CDS
GGAAAGTCTCAAATCAAAGA+AGG 0.484998 2.2:-653139 MS.gene83549:CDS
CATTCCCGTGAAAAGAAGCC+CGG 0.485250 2.2:-654150 MS.gene83549:CDS
GCCTCTACCTCCGGTAGCTC+CGG 0.498178 2.2:+658716 None:intergenic
GGAATGAAATATCCAATTAG+TGG 0.507785 2.2:+654167 None:intergenic
TTGAGCAGCTTTCTCCTGAC+AGG 0.509313 2.2:+654495 None:intergenic
CTGTAAATGACGAGGATGAA+TGG 0.513522 2.2:-657699 MS.gene83549:CDS
CTTCTCGCCGCCTCTACCTC+CGG 0.514260 2.2:+658707 None:intergenic
TCTATATAAGTGCATTAAAG+AGG 0.514418 2.2:-654471 MS.gene83549:intron
AGTAAACTCGTCAAGTGTCA+TGG 0.514613 2.2:+656013 None:intergenic
CCATCAACAAAAGCTTTGCC+GGG 0.519750 2.2:+654132 None:intergenic
TCAGGTCCAAGCTCAGATAT+GGG 0.520534 2.2:+656050 None:intergenic
GGCTGGTGCTGTATACATCA+AGG 0.525973 2.2:-658404 MS.gene83549:CDS
GAAAGTCTCAAATCAAAGAA+GGG 0.526412 2.2:-653138 MS.gene83549:CDS
CGGTGGAAGAGAACTGTATC+GGG 0.530121 2.2:-658682 MS.gene83549:CDS
GATATGGGAGGCACTGATGA+TGG 0.533171 2.2:+656065 None:intergenic
ATGATTGATTTCATCACCGC+AGG 0.534683 2.2:-653387 MS.gene83549:CDS
GAGAGTACCGAATTGGAAAG+AGG 0.538227 2.2:+658505 None:intergenic
GTGCCTCCCATATCTGAGCT+TGG 0.543407 2.2:-656056 MS.gene83549:CDS
TTGTTGCAGCTCGTCGGAAG+GGG 0.544764 2.2:-658565 MS.gene83549:CDS
GCGGTGGAAGAGAACTGTAT+CGG 0.546118 2.2:-658683 MS.gene83549:CDS
GTCGATGACTTTGTCATCAT+CGG 0.552732 2.2:+658634 None:intergenic
GATTGTTGCAGCTCGTCGGA+AGG 0.555315 2.2:-658567 MS.gene83549:CDS
GTAAACTCGTCAAGTGTCAT+GGG 0.556504 2.2:+656014 None:intergenic
AGAGGCGGCGAGAAGAGCGG+TGG 0.561155 2.2:-658699 MS.gene83549:CDS
GTCACAATACATCTTTGAGC+AGG 0.563180 2.2:+656154 None:intergenic
GTCGGAAGGGGAAGAATATG+TGG 0.563477 2.2:-658553 MS.gene83549:CDS
CCAGAGTTGCAAAAGCTAAG+TGG 0.563520 2.2:-653258 MS.gene83549:CDS
GAATGAAATATCCAATTAGT+GGG 0.570260 2.2:+654168 None:intergenic
AAGAAACTGGCAAGCCCAGA+GGG 0.571679 2.2:-653221 MS.gene83549:CDS
TGAAAAGAAGAAACCAGGCT+CGG 0.576111 2.2:-653004 MS.gene83549:CDS
GATGACAATGATGGTGATGC+TGG 0.577086 2.2:-653054 MS.gene83549:CDS
AGAGTACCGAATTGGAAAGA+GGG 0.583270 2.2:+658506 None:intergenic
ATCAAAGTAGTAGAAGTACT+AGG 0.585884 2.2:-652924 MS.gene83549:CDS
ATTGTTGCAGCTCGTCGGAA+GGG 0.588802 2.2:-658566 MS.gene83549:CDS
TTTCATCACCGCAGGTGGCA+GGG 0.589885 2.2:-653379 MS.gene83549:intron
ATTGATTTCATCACCGCAGG+TGG 0.594789 2.2:-653384 MS.gene83549:CDS
AGACGATTGTTGCAGCTCGT+CGG 0.595174 2.2:-658571 MS.gene83549:CDS
TCCAGGCAAGGATTCATCCA+CGG 0.599987 2.2:-654532 MS.gene83549:intron
CAAGTTGAAAAGAAGAAACC+AGG 0.602633 2.2:-653009 MS.gene83549:CDS
ATGGCATACCCTGCCACCTG+CGG 0.606176 2.2:+653371 None:intergenic
CCGAATTGGAAAGAGGGAAA+CGG 0.607478 2.2:+658512 None:intergenic
GGTAGAGGCGGCGAGAAGAG+CGG 0.609449 2.2:-658702 MS.gene83549:CDS
AGGCTAGAAGCTATCTGCCG+TGG 0.612330 2.2:+654515 None:intergenic
CAAATCAAAGAAGGGGACGA+AGG 0.629764 2.2:-653130 MS.gene83549:CDS
GCTGGTGCTGTATACATCAA+GGG 0.640257 2.2:-658403 MS.gene83549:CDS
GAAAGTGACGATGACAATGA+TGG 0.640739 2.2:-653063 MS.gene83549:CDS
AAAAGAAGAAACCAGGCTCG+GGG 0.641315 2.2:-653002 MS.gene83549:CDS
GTAGATGATGATAACAATGA+CGG 0.642794 2.2:-653177 MS.gene83549:CDS
GGAGCTACCGGAGGTAGAGG+CGG 0.644715 2.2:-658714 MS.gene83549:CDS
GACTAATAGGAAACAGACCA+AGG 0.648390 2.2:-652980 MS.gene83549:CDS
ACATTGCTGCAGCTAGACGA+TGG 0.648396 2.2:-656222 MS.gene83549:intron
CAGGTCTGCTGTAAATGACG+AGG 0.648999 2.2:-657707 MS.gene83549:CDS
AAAGTCTCAAATCAAAGAAG+GGG 0.649563 2.2:-653137 MS.gene83549:CDS
CACAATGCCGGAGCTACCGG+AGG 0.654051 2.2:-658723 None:intergenic
AACAATCGTCTTCCCAACAA+CGG 0.658793 2.2:+658583 None:intergenic
AAAGAAACTGGCAAGCCCAG+AGG 0.666706 2.2:-653222 MS.gene83549:CDS
GATGATGACAAAGTCATCGA+CGG 0.687773 2.2:-658632 MS.gene83549:CDS
AATTGGAAAGAGGGAAACGG+AGG 0.705743 2.2:+658515 None:intergenic
ACTAATAGGAAACAGACCAA+GGG 0.706167 2.2:-652979 MS.gene83549:CDS
GGTCCAAGCTCAGATATGGG+AGG 0.706462 2.2:+656053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTAATTATTTATTATT+AGG - chr2.2:656901-656920 MS.gene83549:intron 0.0%
!! TTATTTATTATTAGGAATTA+AGG - chr2.2:656909-656928 MS.gene83549:intron 10.0%
!! AAATTATAAATGTTTGGATT+TGG + chr2.2:658202-658221 None:intergenic 15.0%
!! AATAAAAAACTTTGAATACT+TGG + chr2.2:653959-653978 None:intergenic 15.0%
!! ACATGAAAATTATAAATGTT+TGG + chr2.2:658208-658227 None:intergenic 15.0%
!! CTATAATATAATCAATTTCT+TGG - chr2.2:658106-658125 MS.gene83549:intron 15.0%
!! CTGTAAAATAAATTTATTTG+TGG + chr2.2:657395-657414 None:intergenic 15.0%
!! TAGAAATAAATAAAAGATGA+TGG + chr2.2:658311-658330 None:intergenic 15.0%
!! TTAACTATATGATGATATAA+TGG - chr2.2:656118-656137 MS.gene83549:intron 15.0%
!! TTTAACATTATTGAGAAAAT+GGG - chr2.2:654359-654378 MS.gene83549:intron 15.0%
!! TTTCAATTCTATATCAAAAA+AGG + chr2.2:656668-656687 None:intergenic 15.0%
!!! AATCAATTTACTACAATTTT+AGG + chr2.2:657639-657658 None:intergenic 15.0%
!!! ATCAATTTACTACAATTTTA+GGG + chr2.2:657638-657657 None:intergenic 15.0%
!!! CACAAATAAATTTATTTTAC+AGG - chr2.2:657393-657412 MS.gene83549:intron 15.0%
!!! CTAGATTTTTATAATTCAAT+TGG - chr2.2:656733-656752 MS.gene83549:intron 15.0%
!!! TTTATTTTTAACTCAAAGTA+GGG + chr2.2:657529-657548 None:intergenic 15.0%
!!! TTTTAACATTATTGAGAAAA+TGG - chr2.2:654358-654377 MS.gene83549:intron 15.0%
!!! TTTTATTTTTAACTCAAAGT+AGG + chr2.2:657530-657549 None:intergenic 15.0%
!!! TTTTGATATAGAATTGAAAT+CGG - chr2.2:656669-656688 MS.gene83549:intron 15.0%
!! AAAATACATGGAAAATATCA+AGG + chr2.2:656013-656032 None:intergenic 20.0%
!! AAATCTAATGACTTCAAATT+TGG + chr2.2:655147-655166 None:intergenic 20.0%
!! AATGGCATACATATAATAAA+AGG - chr2.2:656484-656503 MS.gene83549:intron 20.0%
!! AATTGAACATAATTCACATT+TGG + chr2.2:653358-653377 None:intergenic 20.0%
!! ACAGAAATCAAAAATGTAAA+GGG + chr2.2:655828-655847 None:intergenic 20.0%
!! ATAGACTAATATCATATACT+TGG - chr2.2:656199-656218 MS.gene83549:CDS 20.0%
!! ATATCAAACTCTTATTAGTA+TGG + chr2.2:655519-655538 None:intergenic 20.0%
!! ATGGCATACATATAATAAAA+GGG - chr2.2:656485-656504 MS.gene83549:intron 20.0%
!! CATTTGTTCATATAATATGT+AGG + chr2.2:658162-658181 None:intergenic 20.0%
!! GTGTTCTTAACTTATTATTT+GGG - chr2.2:656627-656646 MS.gene83549:intron 20.0%
!! TAAAAGAAAAGAAACCAATA+TGG + chr2.2:656270-656289 None:intergenic 20.0%
!! TCAAATAAAAAACATAGCAT+CGG + chr2.2:654065-654084 None:intergenic 20.0%
!! TGTAAATTTAAATACGCAAA+TGG - chr2.2:653613-653632 MS.gene83549:intron 20.0%
!! TGTGTTCTTAACTTATTATT+TGG - chr2.2:656626-656645 MS.gene83549:intron 20.0%
!! TTAACATTATTGAGAAAATG+GGG - chr2.2:654360-654379 MS.gene83549:intron 20.0%
!! TTTATTATTAGGAATTAAGG+AGG - chr2.2:656912-656931 MS.gene83549:intron 20.0%
!!! AACTTTAAGTGTTTTCATTA+GGG - chr2.2:653734-653753 MS.gene83549:intron 20.0%
!!! AGTTTGTTGGATATTATTTT+GGG - chr2.2:654895-654914 MS.gene83549:intron 20.0%
!!! ATTTACATTTTCATACTACA+CGG + chr2.2:653600-653619 None:intergenic 20.0%
!!! GTATTCAAAGTTTTTTATTC+AGG - chr2.2:653960-653979 MS.gene83549:intron 20.0%
!!! TAACGAAGTTTTAATATTTG+TGG - chr2.2:657811-657830 MS.gene83549:intron 20.0%
!!! TAACTTTAAGTGTTTTCATT+AGG - chr2.2:653733-653752 MS.gene83549:intron 20.0%
!!! TATTTTAACAATATCTCCAA+CGG + chr2.2:655060-655079 None:intergenic 20.0%
!!! TTTAGCCTCTATATTTTTTA+TGG + chr2.2:657234-657253 None:intergenic 20.0%
!!! TTTTAATTCTCATCTAAACT+TGG - chr2.2:656082-656101 MS.gene83549:intron 20.0%
! AAAAACTTTGAATACTTGGA+AGG + chr2.2:653955-653974 None:intergenic 25.0%
! AAAATGAAATAACCACTCAA+GGG + chr2.2:657311-657330 None:intergenic 25.0%
! AAGTATCTATTTGTTCAATC+TGG + chr2.2:656302-656321 None:intergenic 25.0%
! AATGATAGTTTATTAGTCAC+TGG + chr2.2:657008-657027 None:intergenic 25.0%
! AGACTCCATAAAAAATATAG+AGG - chr2.2:657226-657245 MS.gene83549:intron 25.0%
! ATAAACTATCATTCTAGCAT+TGG - chr2.2:657015-657034 MS.gene83549:intron 25.0%
! ATACAATAAGTTATAAGGCA+TGG + chr2.2:657066-657085 None:intergenic 25.0%
! ATTCAATTGGTCAAACAATT+AGG - chr2.2:656746-656765 MS.gene83549:intron 25.0%
! CAAAATAATATCCAACAAAC+TGG + chr2.2:654896-654915 None:intergenic 25.0%
! CAATTCTATATCAAAAAAGG+TGG + chr2.2:656665-656684 None:intergenic 25.0%
! CACAGAAATCAAAAATGTAA+AGG + chr2.2:655829-655848 None:intergenic 25.0%
! GAAACATGATATTGTAAAAC+TGG + chr2.2:653549-653568 None:intergenic 25.0%
! GAATGAAATATCCAATTAGT+GGG + chr2.2:657463-657482 None:intergenic 25.0%
! GGGAAATACAATAAGTTATA+AGG + chr2.2:657071-657090 None:intergenic 25.0%
! GTAAATATAAACTTCTTCAC+AGG - chr2.2:653902-653921 MS.gene83549:intron 25.0%
! TAAATAAAGGTTAGATGTCA+TGG + chr2.2:654456-654475 None:intergenic 25.0%
! TAATACCTTCAAAACAATCA+AGG + chr2.2:657866-657885 None:intergenic 25.0%
! TAATATATAGTAGTCACAGA+TGG + chr2.2:654196-654215 None:intergenic 25.0%
! TACTTTCATGTTACATACTA+TGG - chr2.2:654971-654990 MS.gene83549:intron 25.0%
! TATGATGATATAATGGCTAA+TGG - chr2.2:656125-656144 MS.gene83549:intron 25.0%
! TCCATAGTTAACAAAATACA+TGG + chr2.2:656025-656044 None:intergenic 25.0%
! TCTATATAAGTGCATTAAAG+AGG - chr2.2:657157-657176 MS.gene83549:intron 25.0%
! TCTTCACTTTAACATGTATA+CGG - chr2.2:654713-654732 MS.gene83549:intron 25.0%
! TGGCATACATATAATAAAAG+GGG - chr2.2:656486-656505 MS.gene83549:intron 25.0%
! TTATGCTCTTATGTATGAAA+TGG + chr2.2:655231-655250 None:intergenic 25.0%
! TTGCTGTAACAAAGTATAAA+AGG - chr2.2:653250-653269 MS.gene83549:CDS 25.0%
! TTGGTGTGATTTACTATTAT+TGG - chr2.2:657727-657746 MS.gene83549:intron 25.0%
! TTTGTTCAGAAGAAATGTAT+TGG - chr2.2:656393-656412 MS.gene83549:intron 25.0%
!! AACTTGAACATTCAAAGTTT+TGG + chr2.2:654338-654357 None:intergenic 25.0%
!! ATAATTTTCATGTGATTGCA+GGG - chr2.2:658215-658234 MS.gene83549:intron 25.0%
!! TACTTTTCTTGTCAATTACA+AGG - chr2.2:654268-654287 MS.gene83549:intron 25.0%
!! TATAATTTTCATGTGATTGC+AGG - chr2.2:658214-658233 MS.gene83549:intron 25.0%
!! TCAAACAATTAGGAACATTT+TGG - chr2.2:656756-656775 MS.gene83549:intron 25.0%
!! TCAAGGATTTAAAATCATTG+AGG + chr2.2:655996-656015 None:intergenic 25.0%
!! TCCATGTATTTTGTTAACTA+TGG - chr2.2:656021-656040 MS.gene83549:CDS 25.0%
!! TTCATACATAAGAGCATAAT+CGG - chr2.2:655232-655251 MS.gene83549:intron 25.0%
!!! ATTTTAACAATATCTCCAAC+GGG + chr2.2:655059-655078 None:intergenic 25.0%
!!! CAGTTTGTTGGATATTATTT+TGG - chr2.2:654894-654913 MS.gene83549:intron 25.0%
!!! CTTTTTTGTCAAGATTTTGT+TGG - chr2.2:653568-653587 MS.gene83549:intron 25.0%
!!! GTTTGTTGGATATTATTTTG+GGG - chr2.2:654896-654915 MS.gene83549:intron 25.0%
!!! TTATACCTTGATTGTTTTGA+AGG - chr2.2:657858-657877 MS.gene83549:intron 25.0%
!!! TTTTTGCTGTAAAATAGCTA+TGG - chr2.2:654811-654830 MS.gene83549:intron 25.0%
AAAAAGCCTGGAAAAATAAG+TGG - chr2.2:657340-657359 MS.gene83549:intron 30.0%
AAAGTCTCAAATCAAAGAAG+GGG - chr2.2:658491-658510 MS.gene83549:intron 30.0%
AAATGAAATAACCACTCAAG+GGG + chr2.2:657310-657329 None:intergenic 30.0%
AAGAAAAGAAACCAATATGG+AGG + chr2.2:656267-656286 None:intergenic 30.0%
AAGAAGAAACGTGAACAATT+TGG + chr2.2:656522-656541 None:intergenic 30.0%
AATAAGAGCAATGTTCAGAA+TGG + chr2.2:658279-658298 None:intergenic 30.0%
AATATTCCCCTTATAAGACT+TGG - chr2.2:655076-655095 MS.gene83549:intron 30.0%
ACAGATATTGTCCAAAATGT+AGG - chr2.2:654293-654312 MS.gene83549:intron 30.0%
AGCTCAATACCATAGTAAAA+GGG + chr2.2:657587-657606 None:intergenic 30.0%
AGTTACAAGCATAAATCGTA+AGG + chr2.2:653193-653212 None:intergenic 30.0%
ATAAGTGCATTAAAGAGGTA+GGG - chr2.2:657162-657181 MS.gene83549:intron 30.0%
ATCATTCCCCAATAATATGA+AGG + chr2.2:657783-657802 None:intergenic 30.0%
ATCTTCACAATGCTTTCAAA+AGG - chr2.2:657999-658018 MS.gene83549:intron 30.0%
ATGACATTGTTTGATTCATG+AGG - chr2.2:656822-656841 MS.gene83549:intron 30.0%
ATGTATAAAGTTCAAACTGC+AGG + chr2.2:655178-655197 None:intergenic 30.0%
ATTCACTAAAAGCTCTTTAG+AGG - chr2.2:654418-654437 MS.gene83549:intron 30.0%
ATTCGTCTATTTGATCTTCA+AGG + chr2.2:654650-654669 None:intergenic 30.0%
CAAACTCAGATGTAAAGTTA+TGG - chr2.2:653685-653704 MS.gene83549:intron 30.0%
CAAGAAGAAAACTGAAATCA+AGG - chr2.2:655649-655668 MS.gene83549:intron 30.0%
CAATCAAGAATGCAAGTTTA+GGG + chr2.2:657710-657729 None:intergenic 30.0%
CATAACTTTACATCTGAGTT+TGG + chr2.2:653687-653706 None:intergenic 30.0%
CTTCACTTTAACATGTATAC+GGG - chr2.2:654714-654733 MS.gene83549:intron 30.0%
GAAAATGAAATAACCACTCA+AGG + chr2.2:657312-657331 None:intergenic 30.0%
GAAAGTCTCAAATCAAAGAA+GGG - chr2.2:658490-658509 MS.gene83549:intron 30.0%
GGAATGAAATATCCAATTAG+TGG + chr2.2:657464-657483 None:intergenic 30.0%
GTAACAAAGTATAAAAGGTG+AGG - chr2.2:653255-653274 MS.gene83549:CDS 30.0%
GTAAGATTCTGATTACATTC+AGG - chr2.2:654775-654794 MS.gene83549:intron 30.0%
GTAGATGATGATAACAATGA+CGG - chr2.2:658451-658470 MS.gene83549:intron 30.0%
GTTAAAAAAAGTCAAATGCG+AGG + chr2.2:655205-655224 None:intergenic 30.0%
TAATAGTTGCTAACAGCTTA+TGG + chr2.2:656706-656725 None:intergenic 30.0%
TACATCCATACATGATTTCA+TGG - chr2.2:654232-654251 MS.gene83549:intron 30.0%
TATAAGTGCATTAAAGAGGT+AGG - chr2.2:657161-657180 MS.gene83549:intron 30.0%
TATATTTCCTTCTGTGTAGT+GGG - chr2.2:653765-653784 MS.gene83549:intron 30.0%
TATTGATCCTATAACACATC+TGG + chr2.2:658064-658083 None:intergenic 30.0%
TCACAAGTGTTAAAAGAAAC+TGG - chr2.2:658394-658413 MS.gene83549:CDS 30.0%
TCCTGGTGTACTATAAATAA+AGG + chr2.2:654469-654488 None:intergenic 30.0%
TCTTCACAATGCTTTCAAAA+GGG - chr2.2:658000-658019 MS.gene83549:intron 30.0%
TTATATTTCCTTCTGTGTAG+TGG - chr2.2:653764-653783 MS.gene83549:intron 30.0%
TTCAAAAAGAAAAAAGACCG+AGG - chr2.2:658543-658562 MS.gene83549:CDS 30.0%
TTTATGCTTGTAACTGTGTT+AGG - chr2.2:653198-653217 MS.gene83549:CDS 30.0%
! ACCTTTATTTATAGTACACC+AGG - chr2.2:654465-654484 MS.gene83549:intron 30.0%
! ATTGTATTTCCCTTATTTCC+AGG - chr2.2:657079-657098 MS.gene83549:intron 30.0%
! CTTTAAGAGATTTGATCGTT+AGG - chr2.2:656539-656558 MS.gene83549:intron 30.0%
! GTTTTATCATGAATCTTGTC+CGG + chr2.2:656799-656818 None:intergenic 30.0%
! TAGAAGGTATAGAACAAACT+AGG - chr2.2:654523-654542 MS.gene83549:CDS 30.0%
! TATATTTCTGTGAAGCAGAA+GGG - chr2.2:654751-654770 MS.gene83549:intron 30.0%
! TTTTATCTAGTCCTCCATAT+TGG - chr2.2:656253-656272 MS.gene83549:intron 30.0%
! TTTTTGTTAGAGTTGACGAA+TGG - chr2.2:654687-654706 MS.gene83549:intron 30.0%
!! AGTGGTTATTTCATTTTCGA+TGG - chr2.2:657314-657333 MS.gene83549:intron 30.0%
!! ATATTTCAGGCATTGGAAAT+TGG - chr2.2:655927-655946 MS.gene83549:intron 30.0%
!! ATCAAAGTAGTAGAAGTACT+AGG - chr2.2:658704-658723 MS.gene83549:CDS 30.0%
!! ATCTACACTTGTTTTCTTTG+AGG + chr2.2:658437-658456 None:intergenic 30.0%
!! GTGGTTATTTCATTTTCGAT+GGG - chr2.2:657315-657334 MS.gene83549:intron 30.0%
!! TACATTCAGGTTGTAAGTTT+AGG - chr2.2:654788-654807 MS.gene83549:intron 30.0%
!! TATTTCAGGCATTGGAAATT+GGG - chr2.2:655928-655947 MS.gene83549:intron 30.0%
!! TGGTTATTTCATTTTCGATG+GGG - chr2.2:657316-657335 MS.gene83549:intron 30.0%
!! TTGATCTTCAAGGTATTGTA+TGG + chr2.2:654640-654659 None:intergenic 30.0%
!! TTTGAAAGCATTGTGAAGAT+TGG + chr2.2:657999-658018 None:intergenic 30.0%
!! TTTTGGAAATAGCATTTCAC+TGG - chr2.2:656949-656968 MS.gene83549:intron 30.0%
!!! AGGAACATTTTGGAATCAAA+TGG - chr2.2:656766-656785 MS.gene83549:intron 30.0%
!!! ATTTATTTTGTGTCTGTGTG+TGG - chr2.2:656459-656478 MS.gene83549:intron 30.0%
!!! GTTTTGGAAAATATTCGTGT+TGG + chr2.2:654322-654341 None:intergenic 30.0%
!!! TCGGTCTTTTTTCTTTTTGA+AGG + chr2.2:658544-658563 None:intergenic 30.0%
!!! TTTATTTTGTGTCTGTGTGT+GGG - chr2.2:656460-656479 MS.gene83549:intron 30.0%
AAACTAGGTTATGAACCTGT+TGG - chr2.2:654538-654557 MS.gene83549:intron 35.0%
AAATGAAAGATCCGCTTACT+TGG + chr2.2:655973-655992 None:intergenic 35.0%
AACTTTACCACTTGTGTCTT+TGG - chr2.2:654020-654039 MS.gene83549:intron 35.0%
ACTAATAGGAAACAGACCAA+GGG - chr2.2:658649-658668 MS.gene83549:CDS 35.0%
ACTTTACCACTTGTGTCTTT+GGG - chr2.2:654021-654040 MS.gene83549:intron 35.0%
AGCTCATTGAGATTTGAGTA+TGG + chr2.2:653826-653845 None:intergenic 35.0%
ATATAGAGGCTAAAACCTGT+AGG - chr2.2:657240-657259 MS.gene83549:intron 35.0%
ATATTGCATCAGCAAGATGA+TGG - chr2.2:656230-656249 MS.gene83549:intron 35.0%
ATCGTAAGGATTATGAAGCT+AGG + chr2.2:653179-653198 None:intergenic 35.0%
ATCTGTACCAGATGTGTTAT+AGG - chr2.2:658054-658073 MS.gene83549:intron 35.0%
ATGGATGACAATTTGCAAGT+AGG + chr2.2:655500-655519 None:intergenic 35.0%
CAATCAAAGAAACGTGTTCA+AGG - chr2.2:658679-658698 MS.gene83549:CDS 35.0%
CAGCTCAATACCATAGTAAA+AGG + chr2.2:657588-657607 None:intergenic 35.0%
CCAATCAAGAATGCAAGTTT+AGG + chr2.2:657711-657730 None:intergenic 35.0%
CCTAAACTTGCATTCTTGAT+TGG - chr2.2:657708-657727 MS.gene83549:intron 35.0%
CCTGTAGGTTATTCAATTTG+CGG - chr2.2:657255-657274 MS.gene83549:intron 35.0%
CTATTTGTTCAATCTGGTCA+AGG + chr2.2:656296-656315 None:intergenic 35.0%
GGAAAGTCTCAAATCAAAGA+AGG - chr2.2:658489-658508 MS.gene83549:intron 35.0%
GTAGTCAATATCCCACTAAT+TGG - chr2.2:657449-657468 MS.gene83549:intron 35.0%
GTTCTATACCTTCTAAGCAA+GGG + chr2.2:654518-654537 None:intergenic 35.0%
GTTTATATCCCTTGCTTAGA+AGG - chr2.2:654507-654526 MS.gene83549:CDS 35.0%
TAACCACTGAGAGAACTTAT+AGG + chr2.2:653880-653899 None:intergenic 35.0%
TCGAAAAAGCAGTTGAAGTT+GGG - chr2.2:657419-657438 MS.gene83549:intron 35.0%
TCGTAAGGATTATGAAGCTA+GGG + chr2.2:653178-653197 None:intergenic 35.0%
TGAATGATGACAAACTGAAG+TGG - chr2.2:654085-654104 MS.gene83549:intron 35.0%
TGCAGCAATGTGATTTAATC+TGG + chr2.2:655397-655416 None:intergenic 35.0%
TGGATGACAATTTGCAAGTA+GGG + chr2.2:655499-655518 None:intergenic 35.0%
TGTTCTATACCTTCTAAGCA+AGG + chr2.2:654519-654538 None:intergenic 35.0%
TTATTAGGAATTAAGGAGGC+AGG - chr2.2:656916-656935 MS.gene83549:intron 35.0%
! AGAGTGCCTTCATATTATTG+GGG - chr2.2:657774-657793 MS.gene83549:intron 35.0%
! CAAGTTGAAAAGAAGAAACC+AGG - chr2.2:658619-658638 MS.gene83549:CDS 35.0%
! CAGAGTGCCTTCATATTATT+GGG - chr2.2:657773-657792 MS.gene83549:intron 35.0%
! CATTCTTGTTTCCAGTTTGT+TGG - chr2.2:654882-654901 MS.gene83549:intron 35.0%
! CTATATTTCTGTGAAGCAGA+AGG - chr2.2:654750-654769 MS.gene83549:intron 35.0%
! GTATTCCAGTTTGAAACTCA+CGG - chr2.2:657910-657929 MS.gene83549:intron 35.0%
! TATTCCAGTTTGAAACTCAC+GGG - chr2.2:657911-657930 MS.gene83549:intron 35.0%
! TGAATCGTACCCTTTTACTA+TGG - chr2.2:657575-657594 MS.gene83549:intron 35.0%
! TGAATGGTCTGAAATCTAGT+TGG - chr2.2:656341-656360 MS.gene83549:intron 35.0%
!! GGTTATTTCATTTTCGATGG+GGG - chr2.2:657317-657336 MS.gene83549:intron 35.0%
!! TTAACGGGAAAGGTTTTTAG+AGG - chr2.2:656855-656874 MS.gene83549:intron 35.0%
!!! TGTTGGATATTATTTTGGGG+CGG - chr2.2:654899-654918 MS.gene83549:intron 35.0%
AACAATCGTCTTCCCAACAA+CGG + chr2.2:653048-653067 None:intergenic 40.0%
AACGTGAACAATTTGGACAG+TGG + chr2.2:656515-656534 None:intergenic 40.0%
AATTCGAAGCTTCCGTTGTT+GGG - chr2.2:653033-653052 MS.gene83549:CDS 40.0%
ACACCTATAAGTTCTCTCAG+TGG - chr2.2:653874-653893 MS.gene83549:intron 40.0%
ACATTGGCAACTTCAACTGA+TGG - chr2.2:654589-654608 MS.gene83549:intron 40.0%
ACCATCAACAAAAGCTTTGC+CGG + chr2.2:657500-657519 None:intergenic 40.0%
ACTGGATTTAGTATCTGCTC+TGG - chr2.2:656967-656986 MS.gene83549:intron 40.0%
AGATACTTGTTCACGTCATC+AGG - chr2.2:656314-656333 MS.gene83549:intron 40.0%
AGTAAACTCGTCAAGTGTCA+TGG + chr2.2:655618-655637 None:intergenic 40.0%
AGTAGCCTGTATGTTAGACT+TGG - chr2.2:654162-654181 MS.gene83549:CDS 40.0%
AGTATAAAAGGTGAGGCCAA+TGG - chr2.2:653262-653281 MS.gene83549:CDS 40.0%
ATAACCACTCAAGGGGAAAA+CGG + chr2.2:657303-657322 None:intergenic 40.0%
CAAGGTTAACGATACTCCAT+TGG + chr2.2:653281-653300 None:intergenic 40.0%
CAGAGCTATATTTCAGGCAT+TGG - chr2.2:655920-655939 MS.gene83549:intron 40.0%
CATAGCATTCTGCTCATCAA+AGG + chr2.2:654000-654019 None:intergenic 40.0%
CCGCAAATTGAATAACCTAC+AGG + chr2.2:657258-657277 None:intergenic 40.0%
CGAAAAAGCAGTTGAAGTTG+GGG - chr2.2:657420-657439 MS.gene83549:intron 40.0%
CTCAGATGTAAAGTTATGGC+AGG - chr2.2:653689-653708 MS.gene83549:intron 40.0%
CTGGATTTAGTATCTGCTCT+GGG - chr2.2:656968-656987 MS.gene83549:intron 40.0%
CTGTAAATGACGAGGATGAA+TGG - chr2.2:653929-653948 MS.gene83549:intron 40.0%
GAAAGTGACGATGACAATGA+TGG - chr2.2:658565-658584 MS.gene83549:CDS 40.0%
GAATCCTTGCCTGGAAATAA+GGG + chr2.2:657091-657110 None:intergenic 40.0%
GACTAATAGGAAACAGACCA+AGG - chr2.2:658648-658667 MS.gene83549:CDS 40.0%
GAGTATAACGTGTGAAGTAG+AGG + chr2.2:653477-653496 None:intergenic 40.0%
GATGATGACAAAGTCATCGA+CGG - chr2.2:652996-653015 MS.gene83549:CDS 40.0%
GCTTCTACTACCTAACACAT+TGG - chr2.2:654573-654592 MS.gene83549:intron 40.0%
GCTTGTAACTGTGTTAGGTA+TGG - chr2.2:653203-653222 MS.gene83549:CDS 40.0%
GTAAACTCGTCAAGTGTCAT+GGG + chr2.2:655617-655636 None:intergenic 40.0%
GTAGCCTGTATGTTAGACTT+GGG - chr2.2:654163-654182 MS.gene83549:CDS 40.0%
GTCACAATACATCTTTGAGC+AGG + chr2.2:655477-655496 None:intergenic 40.0%
GTCGAAAAAGCAGTTGAAGT+TGG - chr2.2:657418-657437 MS.gene83549:intron 40.0%
GTCGATGACTTTGTCATCAT+CGG + chr2.2:652997-653016 None:intergenic 40.0%
GTTGAAGTTGCCAATGTGTT+AGG + chr2.2:654586-654605 None:intergenic 40.0%
TCGCACCATGAAATCATGTA+TGG + chr2.2:654240-654259 None:intergenic 40.0%
TGAAAAGAAGAAACCAGGCT+CGG - chr2.2:658624-658643 MS.gene83549:CDS 40.0%
TGAATCCTTGCCTGGAAATA+AGG + chr2.2:657092-657111 None:intergenic 40.0%
TTCAAAAGGGTTTCCGAAAG+TGG - chr2.2:658013-658032 MS.gene83549:intron 40.0%
! AAAAGTTGGCTCAAGGAATG+AGG + chr2.2:655107-655126 None:intergenic 40.0%
! AAATATAGCTCTGCAGAGGA+TGG + chr2.2:655913-655932 None:intergenic 40.0%
! AGCTGTCTTTTACCGACAAA+AGG - chr2.2:655434-655453 MS.gene83549:intron 40.0%
! AGGATAGGCCAAGTCTTATA+AGG + chr2.2:655087-655106 None:intergenic 40.0%
! AGGCAGGAGCTTCAAATTTT+TGG - chr2.2:656932-656951 MS.gene83549:intron 40.0%
! ATGAGAACATCAGCCACTTT+CGG + chr2.2:658029-658048 None:intergenic 40.0%
! ATGAGGCCAATGCTACTTAA+CGG - chr2.2:656839-656858 MS.gene83549:intron 40.0%
! ATGATTGATTTCATCACCGC+AGG - chr2.2:658241-658260 MS.gene83549:intron 40.0%
! ATGGGATCAAAAAGTGCATC+AGG + chr2.2:655599-655618 None:intergenic 40.0%
! ATTCCTTGAGCCAACTTTTG+GGG - chr2.2:655108-655127 MS.gene83549:intron 40.0%
! ATTGTCATCGTCACTTTCCT+CGG + chr2.2:658563-658582 None:intergenic 40.0%
! ATTTCCCTTATTTCCAGGCA+AGG - chr2.2:657084-657103 MS.gene83549:intron 40.0%
! CATTCCTTGAGCCAACTTTT+GGG - chr2.2:655107-655126 MS.gene83549:intron 40.0%
! CCAGAGTGCCTTCATATTAT+TGG - chr2.2:657772-657791 MS.gene83549:intron 40.0%
! GATAGGCCAAGTCTTATAAG+GGG + chr2.2:655085-655104 None:intergenic 40.0%
! GGATAGGCCAAGTCTTATAA+GGG + chr2.2:655086-655105 None:intergenic 40.0%
! GGTCTGAAATCTAGTTGGAA+CGG - chr2.2:656346-656365 MS.gene83549:intron 40.0%
! GTCTGAAATCTAGTTGGAAC+GGG - chr2.2:656347-656366 MS.gene83549:intron 40.0%
! TAAGAAGTGTGAGTGCAACA+AGG + chr2.2:653299-653318 None:intergenic 40.0%
! TCATTCCTTGAGCCAACTTT+TGG - chr2.2:655106-655125 MS.gene83549:intron 40.0%
! TCTAGCAAATCGCCTTTTGT+CGG + chr2.2:655449-655468 None:intergenic 40.0%
!! AGAGTACCGAATTGGAAAGA+GGG + chr2.2:653125-653144 None:intergenic 40.0%
!! CCAATAATATGAAGGCACTC+TGG + chr2.2:657775-657794 None:intergenic 40.0%
!! TCCTCACCACTTATTTTTCC+AGG + chr2.2:657349-657368 None:intergenic 40.0%
!! TGTTAGGTAGTAGAAGCACT+TGG + chr2.2:654570-654589 None:intergenic 40.0%
!!! TGATGTTTTAGTGTTGCGTC+TGG - chr2.2:653410-653429 MS.gene83549:intron 40.0%
AAAAGAAGAAACCAGGCTCG+GGG - chr2.2:658626-658645 MS.gene83549:CDS 45.0%
AACAATATCTCCAACGGGTG+TGG + chr2.2:655054-655073 None:intergenic 45.0%
AAGTTGTGCCTCTGTGCTTA+GGG - chr2.2:655259-655278 MS.gene83549:intron 45.0%
AATTGGAAAGAGGGAAACGG+AGG + chr2.2:653116-653135 None:intergenic 45.0%
ACAATATCTCCAACGGGTGT+GGG + chr2.2:655053-655072 None:intergenic 45.0%
ACATTGTGTGATCAGAGTCC+TGG + chr2.2:654486-654505 None:intergenic 45.0%
AGCACTTGGCTTAATCCAAC+AGG + chr2.2:654556-654575 None:intergenic 45.0%
AGCATCATTGTTCCTCAGGA+AGG + chr2.2:656571-656590 None:intergenic 45.0%
ATCAGGTCCAAGCTCAGATA+TGG + chr2.2:655582-655601 None:intergenic 45.0%
ATGGGGAGAGTGAACATGTT+TGG - chr2.2:654377-654396 MS.gene83549:intron 45.0%
CAAATCAAAGAAGGGGACGA+AGG - chr2.2:658498-658517 MS.gene83549:intron 45.0%
CACGTCATCAGGATTGTGAA+TGG - chr2.2:656325-656344 MS.gene83549:intron 45.0%
CATTAAAGAGGTAGGGATGC+TGG - chr2.2:657169-657188 MS.gene83549:intron 45.0%
CCAGAGTTGCAAAAGCTAAG+TGG - chr2.2:658370-658389 MS.gene83549:intron 45.0%
CCATCAACAAAAGCTTTGCC+GGG + chr2.2:657499-657518 None:intergenic 45.0%
CCGAATTGGAAAGAGGGAAA+CGG + chr2.2:653119-653138 None:intergenic 45.0%
CCGTTTCCCTCTTTCCAATT+CGG - chr2.2:653116-653135 MS.gene83549:CDS 45.0%
CCTCTGCAGAGCTATATTTC+AGG - chr2.2:655914-655933 MS.gene83549:intron 45.0%
CCTTTCCCGTTAAGTAGCAT+TGG + chr2.2:656848-656867 None:intergenic 45.0%
CTAGCCCAAGTCTAACATAC+AGG + chr2.2:654170-654189 None:intergenic 45.0%
CTATGGTGAAAGCTTGTGTC+AGG - chr2.2:654828-654847 MS.gene83549:intron 45.0%
CTTTGATTGCTTCTCTCCCT+TGG + chr2.2:658668-658687 None:intergenic 45.0%
GAAAAGAAGAAACCAGGCTC+GGG - chr2.2:658625-658644 MS.gene83549:CDS 45.0%
GAATTCGAAGCTTCCGTTGT+TGG - chr2.2:653032-653051 MS.gene83549:CDS 45.0%
GCCTGGAAAAATAAGTGGTG+AGG - chr2.2:657345-657364 MS.gene83549:intron 45.0%
GCTAACTCAACCCCAAAAGT+TGG + chr2.2:655121-655140 None:intergenic 45.0%
GGAATCAAATGGTCTGTCAC+CGG - chr2.2:656777-656796 MS.gene83549:intron 45.0%
GTAACAGAGCTTGACTCAAC+AGG + chr2.2:657942-657961 None:intergenic 45.0%
GTAACCCGTGAGTTTCAAAC+TGG + chr2.2:657918-657937 None:intergenic 45.0%
GTAACTGTGTTAGGTATGGC+TGG - chr2.2:653207-653226 MS.gene83549:CDS 45.0%
TACAAGCCCAAAGACACAAG+TGG + chr2.2:654030-654049 None:intergenic 45.0%
TCAGGTCCAAGCTCAGATAT+GGG + chr2.2:655581-655600 None:intergenic 45.0%
TTGGCTCAAGGAATGAGGAT+AGG + chr2.2:655102-655121 None:intergenic 45.0%
! ACAGAGCATCATTGTTCCTC+AGG + chr2.2:656575-656594 None:intergenic 45.0%
! ATTGATTTCATCACCGCAGG+TGG - chr2.2:658244-658263 MS.gene83549:intron 45.0%
! ATTTCCTTCTGTGTAGTGGG+TGG - chr2.2:653768-653787 MS.gene83549:intron 45.0%
! CCAATGCTACTTAACGGGAA+AGG - chr2.2:656845-656864 MS.gene83549:intron 45.0%
! CCTGAAATATAGCTCTGCAG+AGG + chr2.2:655917-655936 None:intergenic 45.0%
! GATGACAATGATGGTGATGC+TGG - chr2.2:658574-658593 MS.gene83549:CDS 45.0%
! TGAGGCCAATGCTACTTAAC+GGG - chr2.2:656840-656859 MS.gene83549:intron 45.0%
!! ACGGGAAAGGTTTTTAGAGG+TGG - chr2.2:656858-656877 MS.gene83549:intron 45.0%
!! AGAGAGAGAGAGTACCGAAT+TGG + chr2.2:653133-653152 None:intergenic 45.0%
!! CCACTTAGCTTTTGCAACTC+TGG + chr2.2:658373-658392 None:intergenic 45.0%
!! CGTGTTGGTGTCCTACATTT+TGG + chr2.2:654307-654326 None:intergenic 45.0%
!! CTGAAGTGGACTATTTGCTG+TGG - chr2.2:654099-654118 MS.gene83549:intron 45.0%
!! GAAGTGCTGTACCAAGTAAG+CGG - chr2.2:655959-655978 MS.gene83549:intron 45.0%
!! GAGAGTACCGAATTGGAAAG+AGG + chr2.2:653126-653145 None:intergenic 45.0%
!! GCTGGTGCTGTATACATCAA+GGG - chr2.2:653225-653244 MS.gene83549:CDS 45.0%
!! GGAAAGGTTTTTAGAGGTGG+TGG - chr2.2:656861-656880 MS.gene83549:intron 45.0%
!! TTCTTTGAGGCTTTCCCTCT+GGG + chr2.2:658424-658443 None:intergenic 45.0%
!! TTTCTTTGAGGCTTTCCCTC+TGG + chr2.2:658425-658444 None:intergenic 45.0%
!! ACAAATTAAAAATTTATATT+TGG + chr2.2:655719-655738 None:intergenic 5.0%
!! CAAATTAAAAATTTATATTT+GGG + chr2.2:655718-655737 None:intergenic 5.0%
AAAGAAACTGGCAAGCCCAG+AGG - chr2.2:658406-658425 MS.gene83549:CDS 50.0%
AAGAAACTGGCAAGCCCAGA+GGG - chr2.2:658407-658426 MS.gene83549:CDS 50.0%
ACATTGCTGCAGCTAGACGA+TGG - chr2.2:655406-655425 MS.gene83549:intron 50.0%
AGACGATTGTTGCAGCTCGT+CGG - chr2.2:653057-653076 MS.gene83549:CDS 50.0%
AGTTGTGCCTCTGTGCTTAG+GGG - chr2.2:655260-655279 MS.gene83549:intron 50.0%
ATTGTTGCAGCTCGTCGGAA+GGG - chr2.2:653062-653081 MS.gene83549:CDS 50.0%
CACCGACAAGCGTCAAACAT+CGG + chr2.2:653334-653353 None:intergenic 50.0%
CAGATAGCTTCTAGCCTGTC+AGG - chr2.2:657119-657138 MS.gene83549:intron 50.0%
CAGGTCTGCTGTAAATGACG+AGG - chr2.2:653921-653940 MS.gene83549:intron 50.0%
CATTCCCGTGAAAAGAAGCC+CGG - chr2.2:657478-657497 MS.gene83549:intron 50.0%
CGGTGGAAGAGAACTGTATC+GGG - chr2.2:652946-652965 MS.gene83549:CDS 50.0%
GAAGTTGTGCCTCTGTGCTT+AGG - chr2.2:655258-655277 MS.gene83549:intron 50.0%
GACAAATCCCCTAAGCACAG+AGG + chr2.2:655270-655289 None:intergenic 50.0%
GCGGTGGAAGAGAACTGTAT+CGG - chr2.2:652945-652964 MS.gene83549:CDS 50.0%
GTCAGTGTGCGTGTTTGTAG+TGG - chr2.2:653440-653459 MS.gene83549:intron 50.0%
GTCCGATGTTTGACGCTTGT+CGG - chr2.2:653329-653348 MS.gene83549:intron 50.0%
GTCGGAAGGGGAAGAATATG+TGG - chr2.2:653075-653094 MS.gene83549:CDS 50.0%
TCCAGGCAAGGATTCATCCA+CGG - chr2.2:657096-657115 MS.gene83549:intron 50.0%
TGTACCACCCACTACACAGA+AGG + chr2.2:653775-653794 None:intergenic 50.0%
TTGAGCAGCTTTCTCCTGAC+AGG + chr2.2:657136-657155 None:intergenic 50.0%
TTGTGTCTGTGTGTGGGCAA+TGG - chr2.2:656466-656485 MS.gene83549:intron 50.0%
TTTCGATGGGGGAAAAAGCC+TGG - chr2.2:657328-657347 MS.gene83549:intron 50.0%
! CAACCCCAAAAGTTGGCTCA+AGG + chr2.2:655114-655133 None:intergenic 50.0%
! CCCGGCAAAGCTTTTGTTGA+TGG - chr2.2:657496-657515 MS.gene83549:intron 50.0%
! CTTTGCCGGGCTTCTTTTCA+CGG + chr2.2:657486-657505 None:intergenic 50.0%
! TTTGCCGGGCTTCTTTTCAC+GGG + chr2.2:657485-657504 None:intergenic 50.0%
!! GATATGGGAGGCACTGATGA+TGG + chr2.2:655566-655585 None:intergenic 50.0%
!! GGCTGGTGCTGTATACATCA+AGG - chr2.2:653224-653243 MS.gene83549:CDS 50.0%
AACCAGGCTCGGGGACTAAT+AGG - chr2.2:658635-658654 MS.gene83549:CDS 55.0%
AGGCTAGAAGCTATCTGCCG+TGG + chr2.2:657116-657135 None:intergenic 55.0%
ATTTCATCACCGCAGGTGGC+AGG - chr2.2:658248-658267 MS.gene83549:intron 55.0%
GATTGTTGCAGCTCGTCGGA+AGG - chr2.2:653061-653080 MS.gene83549:CDS 55.0%
GCTGCAGCTAGACGATGGTT+TGG - chr2.2:655411-655430 MS.gene83549:intron 55.0%
GGTCCAAGCTCAGATATGGG+AGG + chr2.2:655578-655597 None:intergenic 55.0%
GTGCCTCCCATATCTGAGCT+TGG - chr2.2:655572-655591 MS.gene83549:intron 55.0%
GTTAGGCTGTCACCTTCCTG+AGG - chr2.2:656556-656575 MS.gene83549:intron 55.0%
TTCCTATTAGTCCCCGAGCC+TGG + chr2.2:658640-658659 None:intergenic 55.0%
TTGTTGCAGCTCGTCGGAAG+GGG - chr2.2:653063-653082 MS.gene83549:CDS 55.0%
TTTCATCACCGCAGGTGGCA+GGG - chr2.2:658249-658268 MS.gene83549:intron 55.0%
!! GTAGCCGTTTTCCCCTTGAG+TGG - chr2.2:657296-657315 MS.gene83549:intron 55.0%
!! TGACGGCGCTGACGAGAATT+TGG - chr2.2:658468-658487 MS.gene83549:intron 55.0%
ATGGCATACCCTGCCACCTG+CGG + chr2.2:658260-658279 None:intergenic 60.0%
CGTTGAGATCCCACACCCGT+TGG - chr2.2:655041-655060 MS.gene83549:intron 60.0%
GCCGTGGATGAATCCTTGCC+TGG + chr2.2:657100-657119 None:intergenic 60.0%
CTTCTCGCCGCCTCTACCTC+CGG + chr2.2:652924-652943 None:intergenic 65.0%
GCCTCTACCTCCGGTAGCTC+CGG + chr2.2:652915-652934 None:intergenic 65.0%
GGAGCTACCGGAGGTAGAGG+CGG - chr2.2:652914-652933 MS.gene83549:CDS 65.0%
GGTAGAGGCGGCGAGAAGAG+CGG - chr2.2:652926-652945 MS.gene83549:CDS 65.0%
AGAGGCGGCGAGAAGAGCGG+TGG - chr2.2:652929-652948 MS.gene83549:CDS 70.0%
GCCGGAGCTACCGGAGGTAG+AGG - chr2.2:652911-652930 MS.gene83549:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 652909 658741 652909 ID=MS.gene83549
chr2.2 mRNA 652909 658741 652909 ID=MS.gene83549.t1;Parent=MS.gene83549
chr2.2 exon 658513 658741 658513 ID=MS.gene83549.t1.exon1;Parent=MS.gene83549.t1
chr2.2 CDS 658513 658741 658513 ID=cds.MS.gene83549.t1;Parent=MS.gene83549.t1
chr2.2 exon 658379 658430 658379 ID=MS.gene83549.t1.exon2;Parent=MS.gene83549.t1
chr2.2 CDS 658379 658430 658379 ID=cds.MS.gene83549.t1;Parent=MS.gene83549.t1
chr2.2 exon 657669 657726 657669 ID=MS.gene83549.t1.exon3;Parent=MS.gene83549.t1
chr2.2 CDS 657669 657726 657669 ID=cds.MS.gene83549.t1;Parent=MS.gene83549.t1
chr2.2 exon 656164 656232 656164 ID=MS.gene83549.t1.exon4;Parent=MS.gene83549.t1
chr2.2 CDS 656164 656232 656164 ID=cds.MS.gene83549.t1;Parent=MS.gene83549.t1
chr2.2 exon 655962 656087 655962 ID=MS.gene83549.t1.exon5;Parent=MS.gene83549.t1
chr2.2 CDS 655962 656087 655962 ID=cds.MS.gene83549.t1;Parent=MS.gene83549.t1
chr2.2 exon 655677 655727 655677 ID=MS.gene83549.t1.exon6;Parent=MS.gene83549.t1
chr2.2 CDS 655677 655727 655677 ID=cds.MS.gene83549.t1;Parent=MS.gene83549.t1
chr2.2 exon 654472 654549 654472 ID=MS.gene83549.t1.exon7;Parent=MS.gene83549.t1
chr2.2 CDS 654472 654549 654472 ID=cds.MS.gene83549.t1;Parent=MS.gene83549.t1
chr2.2 exon 654133 654235 654133 ID=MS.gene83549.t1.exon8;Parent=MS.gene83549.t1
chr2.2 CDS 654133 654235 654133 ID=cds.MS.gene83549.t1;Parent=MS.gene83549.t1
chr2.2 exon 653380 653414 653380 ID=MS.gene83549.t1.exon9;Parent=MS.gene83549.t1
chr2.2 CDS 653380 653414 653380 ID=cds.MS.gene83549.t1;Parent=MS.gene83549.t1
chr2.2 exon 652909 653295 652909 ID=MS.gene83549.t1.exon10;Parent=MS.gene83549.t1
chr2.2 CDS 652909 653295 652909 ID=cds.MS.gene83549.t1;Parent=MS.gene83549.t1
Gene Sequence

>MS.gene83549

ATGCCGGAGCTACCGGAGGTAGAGGCGGCGAGAAGAGCGGTGGAAGAGAACTGTATCGGGAAGAAGATAATCAAATGCATCGTCGCCGATGATGACAAAGTCATCGACGGTGTCTCTCGCGAAGAATTCGAAGCTTCCGTTGTTGGGAAGACGATTGTTGCAGCTCGTCGGAAGGGGAAGAATATGTGGCTTCAGCTTGATTCTCCTCCGTTTCCCTCTTTCCAATTCGGTACTCTCTCTCTCTCTCTCACTCTTACTTTCTGAAACCCTAGCTTCATAATCCTTACGATTTATGCTTGTAACTGTGTTAGGTATGGCTGGTGCTGTATACATCAAGGGCGTTGCTGTAACAAAGTATAAAAGGTGAGGCCAATGGAGTATCGTTAACCTTGTTGCACTCACACTTCTTATTGAAAGCGTGTCCGATGTTTGACGCTTGTCGGTGTCCAAATGTGAATTATGTTCAATTGTATATATATTTTTTTAAATAATTATCAGTGTTGATGTTTTAGTGTTGCGTCTGGTATACGTGTCAGTGTGCGTGTTTGTAGTGGTTAACTAATAACCTCTACTTCACACGTTATACTCAAGTTTTAAAAAATTCGATGATACATACTCTCTGATTATAATGCATTTTCCAGTTTTACAATATCATGTTTCTTTTTTGTCAAGATTTTGTTGGATTGAGCCGTGTAGTATGAAAATGTAAATTTAAATACGCAAATGGTATTTTGCTGTGTTTGAAGCATACACGTGTAACAAAAAATTATTTGATCCAAACTCAGATGTAAAGTTATGGCAGGAATTATCTTCAGAATGCGAATTAACTTTAAGTGTTTTCATTAGGGTAGTTTCTTATATTTCCTTCTGTGTAGTGGGTGGTACAGTTTTTAATTTGATTTTGAGCTAATATTCCATACTCAAATCTCAATGAGCTCTGTGTGTTATTTTGTTGCAATGATTTGACACCTATAAGTTCTCTCAGTGGTTAATGTAAATATAAACTTCTTCACAGGTCTGCTGTAAATGACGAGGATGAATGGCCTTCCAAGTATTCAAAGTTTTTTATTCAGGTAACAACAGTCACTCCTTTGATGAGCAGAATGCTATGAACTTTACCACTTGTGTCTTTGGGCTTGTAACAACTCAGAATCCGATGCTATGTTTTTTATTTGATGAATGATGACAAACTGAAGTGGACTATTTGCTGTGGACTCATAACTCATAAGATCTGTATTCAGTTGTAAGATGCGAGTAGCCTGTATGTTAGACTTGGGCTAGATTCCATCTGTGACTACTATATATTATACATATGCATTTGTCTACATCCATACATGATTTCATGGTGCGAGAAAACATTACTTTTCTTGTCAATTACAAGGACACAGATATTGTCCAAAATGTAGGACACCAACACGAATATTTTCCAAAACTTTGAATGTTCAAGTTTTTTAACATTATTGAGAAAATGGGGAGAGTGAACATGTTTGGAGCGAGAAAATGCAATGTATTCACTAAAAGCTCTTTAGAGGTTGTCTACTGTTCCATGACATCTAACCTTTATTTATAGTACACCAGGACTCTGATCACACAATGTAGTTTATATCCCTTGCTTAGAAGGTATAGAACAAACTAGGTTATGAACCTGTTGGATTAAGCCAAGTGCTTCTACTACCTAACACATTGGCAACTTCAACTGATGGATTAAATTTCACAAGAATACAAAGACCATACAATACCTTGAAGATCAAATAGACGAATATATGTTATAGTTTTTTTTTTTGTTAGAGTTGACGAATGGAGTTCTTCACTTTAACATGTATACGGGAAAGAAAAACTTTCTATATTTCTGTGAAGCAGAAGGGTGTAAGATTCTGATTACATTCAGGTTGTAAGTTTAGGTTTTTGCTGTAAAATAGCTATGGTGAAAGCTTGTGTCAGGAGTTTTTTTTGTATTGTCATGTGATGAGTTTCATTCTTGTTTCCAGTTTGTTGGATATTATTTTGGGGCGGTAGTGCTTGTGAAGATGTTTTGTTATGTCATCATGTAATGACATATATTTACTTTCATGTTACATACTATGGTTTTAAAATTTTACTAAATTCTAGTCTGTAGATGTAGTGAAGCATTTCGTTGAGATCCCACACCCGTTGGAGATATTGTTAAAATATTCCCCTTATAAGACTTGGCCTATCCTCATTCCTTGAGCCAACTTTTGGGGTTGAGTTAGCTCTCCAAATTTGAAGTCATTAGATTTTCTCAACACCTGCAGTTTGAACTTTATACATGTTACCTCGCATTTGACTTTTTTTAACTTTCCATTTCATACATAAGAGCATAATCGGTATGAAGTTGTGCCTCTGTGCTTAGGGGATTTGTCTTTTGATTTTTTAATTTTCTTCGCATGCATAGTTAGCTTTGATATTTGATGATATGTTTCTCTAGTGAGTATTGTCATTTATGTGTGCTTCAAAAGAGTATTAACCAGATTAAATCACATTGCTGCAGCTAGACGATGGTTTGGAGCTGTCTTTTACCGACAAAAGGCGATTTGCTAGAGTTCGCCTGCTCAAAGATGTATTGTGACCCTACTTGCAAATTGTCATCCATACTAATAAGAGTTTGATATTAACTGTATTTTTTCTTGATATAGCCATCATCAGTGCCTCCCATATCTGAGCTTGGACCTGATGCACTTTTTGATCCCATGACACTTGACGAGTTTACTGAGCGTTTGCACAAGAAGAAAACTGAAATCAAGGCTTTATTACTAGATCAAGTATTAACTGCTTACTTTTATCACTTCCCAAATATAAATTTTTAATTTGTTTATTTATGATACTATACATATGCATTCTTTTTCTCTGTTTTTATATTGATACGCTAACTTAAGTGTTGTTTTTCTTAAAGCAAATCCCTTTACATTTTTGATTTCTGTGTCTTTTACATCTTTCTCTTGTTGCGCTTTTACAATGCATAAGAATTTGATATTCTAACTTTCCATCCTCTGCAGAGCTATATTTCAGGCATTGGAAATTGGGTTGCAGATGAAGTGCTGTACCAAGTAAGCGGATCTTTCATTTCCTCAATGATTTTAAATCCTTGATATTTTCCATGTATTTTGTTAACTATGGAAGATTTTTTAGCTTATAATTATATATAACTTGTTAAGTTTTAATTCTCATCTAAACTTGGTCTTTTTAGCAATTTAACTATATGATGATATAATGGCTAATGGACAGTGATCACATATGAACTCAAGAAAATCAATGAACTTCATTGAGTTTTAATAGACTAATATCATATACTTGGTTGTATTAATATTGCATCAGCAAGATGATGGTTTTATCTAGTCCTCCATATTGGTTTCTTTTCTTTTATATCCTTGACCAGATTGAACAAATAGATACTTGTTCACGTCATCAGGATTGTGAATGGTCTGAAATCTAGTTGGAACGGGAAATAAATAAATAAAGCATAATTTTTGTTCAGAAGAAATGTATTGGAACATATGATGCTTATTAGTTGCTTTTAGTCTTATATATGAAGATTTATTTTGTGTCTGTGTGTGGGCAATGGCATACATATAATAAAAGGGGAAACCACTGTCCAAATTGTTCACGTTTCTTCTTTAAGAGATTTGATCGTTAGGCTGTCACCTTCCTGAGGAACAATGATGCTCTGTAAGAATATAAAATGAAAATTGAATTCAGACTTGTGTTCTTAACTTATTATTTGGGTAGAGAAATCGTCCACCTTTTTTGATATAGAATTGAAATCGGTCTAGATGAATCCATAAGCTGTTAGCAACTATTATTGTTTACTAGATTTTTATAATTCAATTGGTCAAACAATTAGGAACATTTTGGAATCAAATGGTCTGTCACCGGACAAGATTCATGATAAAACATTATGACATTGTTTGATTCATGAGGCCAATGCTACTTAACGGGAAAGGTTTTTAGAGGTGGTGGTTGTTTTTGTATCTGTATTTATTAATTATTTATTATTAGGAATTAAGGAGGCAGGAGCTTCAAATTTTTGGAAATAGCATTTCACTGGATTTAGTATCTGCTCTGGGCTTCTATTTTGTAGCCAGTGACTAATAAACTATCATTCTAGCATTGGAGAAGATAAAATTAGATAATTTACTCCATGCCTTATAACTTATTGTATTTCCCTTATTTCCAGGCAAGGATTCATCCACGGCAGATAGCTTCTAGCCTGTCAGGAGAAAGCTGCTCAACTCTATATAAGTGCATTAAAGAGGTAGGGATGCTGGTTCCCTTTAAATTGCTTATTGTTCTGGAACGTCTAGACTCCATAAAAAATATAGAGGCTAAAACCTGTAGGTTATTCAATTTGCGGTTGAAGTTGATGCTGACTGTAGCCGTTTTCCCCTTGAGTGGTTATTTCATTTTCGATGGGGGAAAAAGCCTGGAAAAATAAGTGGTGAGGAATACTTTTCTACTGTTTATTAATCCACAAATAAATTTATTTTACAGGTTGTCGAAAAAGCAGTTGAAGTTGGGGCAGATAGTAGTCAATATCCCACTAATTGGATATTTCATTCCCGTGAAAAGAAGCCCGGCAAAGCTTTTGTTGATGGTTTGCTTCCCTACTTTGAGTTAAAAATAAAAAACTAATATATTTTTTCGTGCAACATGAATCGTACCCTTTTACTATGGTATTGAGCTGCTTATATTTTAATTTCATGCACAATTTCCCTAAAATTGTAGTAAATTGATTTTTTTTTTTTTTTTACAGTAAAAAATAAATAATACAAGTTATTCAATTCCCTAAACTTGCATTCTTGATTGGTGTGATTTACTATTATTGGATTCATGTTAAAATTGAAGCATCCAGAGTGCCTTCATATTATTGGGGAATGATTACGTTACTAACGAAGTTTTAATATTTGTGGAGAGTGTGACGTTGTAGTAATATATTATACCTTGATTGTTTTGAAGGTATTAAATGAAATAATTAATAATAATTGAGTATTCCAGTTTGAAACTCACGGGTTACTCCTGTTGAGTCAAGCTCTGTTACTATTTTTTATGCGTATTTCTAAGAAGAAAGTATGCCAATCTTCACAATGCTTTCAAAAGGGTTTCCGAAAGTGGCTGATGTTCTCATTTCTTATCTGTACCAGATGTGTTATAGGATCAATATATAAAACTAAGATATATTTATCTATAATATAATCAATTTCTTGGCTCTTTTTTACGTACTGTTTTTTTGCTATGCCTACATATTATATGAACAAATGAAAATATGTTTTCAGTGCCAAATCCAAACATTTATAATTTTCATGTGATTGCAGGGAAAATGATTGATTTCATCACCGCAGGTGGCAGGGTATGCCATTCTGAACATTGCTCTTATTGTTTTTTTGCCATCATCTTTTATTTATTTCTAATCTGCAATTGTTATTGCTCTTAGACAACTGCTTACGTGCCAGAGTTGCAAAAGCTAAGTGGATCACAAGTGTTAAAAGAAACTGGCAAGCCCAGAGGGAAAGCCTCAAAGAAAACAAGTGTAGATGATGATAACAATGACGGCGCTGACGAGAATTTGGAAAGTCTCAAATCAAAGAAGGGGACGAAGGCAGAAGCTAAAGCTAAGAAACCTTCAAAAAGAAAAAAGACCGAGGAAAGTGACGATGACAATGATGGTGATGCTGGTACTGATGATGATGATAGCGATCAAGTTGAAAAGAAGAAACCAGGCTCGGGGACTAATAGGAAACAGACCAAGGGAGAGAAGCAATCAAAGAAACGTGTTCAAGGCAATCAAAGTAGTAGAAGTACTAGGAGTAAAGCTAAGTAG
Protein sequence

>MS.gene83549.t1

MPELPEVEAARRAVEENCIGKKIIKCIVADDDKVIDGVSREEFEASVVGKTIVAARRKGKNMWLQLDSPPFPSFQFGMAGAVYIKGVAVTKYKRSAVNDEDEWPSKYSKFFIQLDDGLELSFTDKRRFARVRLLKDPSSVPPISELGPDALFDPMTLDEFTERLHKKKTEIKALLLDQSYISGIGNWVADEVLYQARIHPRQIASSLSGESCSTLYKCIKEVVEKAVEVGADSSQYPTNWIFHSREKKPGKAFVDGKMIDFITAGGRTTAYVPELQKLSGSQVLKETGKPRGKASKKTSVDDDNNDGADENLESLKSKKGTKAEAKAKKPSKRKKTEESDDDNDGDAGTDDDDSDQVEKKKPGSGTNRKQTKGEKQSKKRVQGNQSSRSTRSKAK